Query 029212
Match_columns 197
No_of_seqs 213 out of 1734
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02422 dephospho-CoA kinase 100.0 1.3E-44 2.7E-49 293.1 18.4 195 1-195 1-228 (232)
2 KOG3220 Similar to bacterial d 100.0 3.9E-42 8.4E-47 267.8 18.6 179 1-179 1-212 (225)
3 PTZ00451 dephospho-CoA kinase; 100.0 1.7E-39 3.7E-44 265.3 20.3 189 1-189 1-239 (244)
4 PF01121 CoaE: Dephospho-CoA k 100.0 1.9E-38 4E-43 248.8 12.4 149 2-150 1-180 (180)
5 PRK14734 coaE dephospho-CoA ki 100.0 1.8E-36 4E-41 241.5 18.1 166 1-166 1-199 (200)
6 PRK14733 coaE dephospho-CoA ki 100.0 2.9E-36 6.2E-41 240.4 16.6 161 2-164 7-201 (204)
7 PRK00081 coaE dephospho-CoA ki 100.0 7E-36 1.5E-40 237.1 16.6 162 1-162 2-194 (194)
8 PRK14732 coaE dephospho-CoA ki 100.0 9.7E-36 2.1E-40 236.6 16.4 163 3-165 1-194 (196)
9 PRK14730 coaE dephospho-CoA ki 100.0 1.2E-35 2.7E-40 235.9 16.9 160 1-160 1-193 (195)
10 COG0237 CoaE Dephospho-CoA kin 100.0 2.3E-35 4.9E-40 234.6 15.9 165 1-165 2-196 (201)
11 TIGR00152 dephospho-CoA kinase 100.0 2.4E-33 5.2E-38 221.2 15.2 154 3-156 1-187 (188)
12 PRK14731 coaE dephospho-CoA ki 100.0 1E-32 2.2E-37 221.2 17.3 163 2-164 6-205 (208)
13 PRK03333 coaE dephospho-CoA ki 100.0 1.8E-32 3.8E-37 238.6 19.2 188 1-188 1-237 (395)
14 cd02022 DPCK Dephospho-coenzym 100.0 5.3E-32 1.1E-36 212.2 13.5 147 3-149 1-178 (179)
15 COG0703 AroK Shikimate kinase 99.8 5.7E-20 1.2E-24 141.9 7.1 146 1-161 2-168 (172)
16 PRK01184 hypothetical protein; 99.8 3.3E-19 7.1E-24 139.8 10.4 157 1-164 1-181 (184)
17 PRK13948 shikimate kinase; Pro 99.7 1.1E-17 2.5E-22 131.4 7.6 144 3-162 12-176 (182)
18 PLN02199 shikimate kinase 99.7 2.7E-16 5.9E-21 131.0 8.3 147 2-164 103-291 (303)
19 COG1102 Cmk Cytidylate kinase 99.6 6.5E-16 1.4E-20 117.5 7.5 155 2-165 1-176 (179)
20 PRK08356 hypothetical protein; 99.6 1.8E-15 3.8E-20 120.0 9.7 155 2-163 6-194 (195)
21 PRK00625 shikimate kinase; Pro 99.6 4E-16 8.7E-21 121.7 5.3 131 3-145 2-150 (173)
22 PRK13947 shikimate kinase; Pro 99.6 6.3E-16 1.4E-20 119.5 6.3 146 1-159 1-165 (171)
23 PRK14021 bifunctional shikimat 99.6 1.5E-15 3.3E-20 137.3 8.3 146 2-161 7-176 (542)
24 PRK13946 shikimate kinase; Pro 99.6 6.7E-15 1.4E-19 115.7 8.7 147 2-164 11-179 (184)
25 PRK08154 anaerobic benzoate ca 99.6 3.2E-15 6.9E-20 126.6 7.3 152 3-163 135-303 (309)
26 PRK13949 shikimate kinase; Pro 99.6 3.9E-15 8.4E-20 115.7 6.6 56 1-59 1-57 (169)
27 PRK05057 aroK shikimate kinase 99.6 6.4E-15 1.4E-19 114.8 7.3 144 2-160 5-170 (172)
28 TIGR00017 cmk cytidylate kinas 99.6 1.3E-13 2.8E-18 111.3 15.0 157 1-157 2-215 (217)
29 PRK04182 cytidylate kinase; Pr 99.5 7.1E-15 1.5E-19 114.0 6.0 158 3-164 2-176 (180)
30 PRK03731 aroL shikimate kinase 99.5 1.5E-14 3.2E-19 112.0 6.8 145 1-160 2-169 (171)
31 COG1936 Predicted nucleotide k 99.5 1.9E-14 4E-19 110.7 4.0 155 2-172 1-171 (180)
32 PRK00131 aroK shikimate kinase 99.4 2E-13 4.3E-18 105.2 6.8 146 2-162 5-172 (175)
33 PF01202 SKI: Shikimate kinase 99.4 1.6E-13 3.5E-18 105.4 4.5 136 10-160 1-158 (158)
34 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 9.9E-14 2.1E-18 108.3 3.1 152 3-159 1-182 (183)
35 PRK06762 hypothetical protein; 99.4 1.5E-12 3.2E-17 100.3 6.6 145 2-159 3-162 (166)
36 TIGR02173 cyt_kin_arch cytidyl 99.3 2.3E-13 5.1E-18 104.7 0.8 147 3-158 2-169 (171)
37 PRK13951 bifunctional shikimat 99.3 4.9E-12 1.1E-16 113.1 8.1 63 3-71 2-65 (488)
38 cd00464 SK Shikimate kinase (S 99.3 2.6E-12 5.6E-17 97.3 5.1 54 3-59 1-55 (154)
39 PRK05480 uridine/cytidine kina 99.3 7.4E-12 1.6E-16 100.1 7.9 57 104-160 137-207 (209)
40 PRK03839 putative kinase; Prov 99.3 1.7E-12 3.8E-17 101.3 3.4 35 3-37 2-37 (180)
41 PRK14737 gmk guanylate kinase; 99.3 1.9E-11 4.2E-16 96.4 8.9 57 103-160 127-183 (186)
42 TIGR01360 aden_kin_iso1 adenyl 99.3 7.1E-12 1.5E-16 97.9 6.3 40 1-40 3-43 (188)
43 PRK10078 ribose 1,5-bisphospho 99.2 2E-11 4.4E-16 96.0 7.0 58 103-164 121-179 (186)
44 PRK14531 adenylate kinase; Pro 99.2 4.4E-11 9.6E-16 93.9 8.9 42 2-43 3-45 (183)
45 PRK02496 adk adenylate kinase; 99.2 8.7E-11 1.9E-15 92.0 10.1 44 1-44 1-45 (184)
46 KOG3347 Predicted nucleotide k 99.2 1.3E-12 2.8E-17 98.3 -0.7 144 2-160 8-165 (176)
47 PLN02200 adenylate kinase fami 99.2 3.4E-10 7.4E-15 92.4 11.2 159 2-163 44-226 (234)
48 PRK04040 adenylate kinase; Pro 99.1 1.1E-10 2.5E-15 92.2 6.7 43 1-43 2-47 (188)
49 PRK14528 adenylate kinase; Pro 99.1 1.7E-10 3.7E-15 90.9 7.6 44 1-44 1-45 (186)
50 PRK14532 adenylate kinase; Pro 99.1 1.6E-10 3.4E-15 90.7 7.3 42 3-44 2-44 (188)
51 PRK13808 adenylate kinase; Pro 99.1 6.3E-10 1.4E-14 94.8 10.5 159 1-165 1-197 (333)
52 PRK14526 adenylate kinase; Pro 99.1 1.2E-10 2.5E-15 93.7 5.6 52 1-53 1-53 (211)
53 TIGR01351 adk adenylate kinase 99.1 1.5E-10 3.2E-15 92.8 5.7 40 4-43 2-42 (210)
54 PRK14530 adenylate kinase; Pro 99.1 4.7E-10 1E-14 90.2 8.0 38 2-39 4-42 (215)
55 TIGR03263 guanyl_kin guanylate 99.1 1.8E-10 4E-15 89.6 5.3 55 105-160 125-179 (180)
56 PRK00279 adk adenylate kinase; 99.1 2.3E-10 5.1E-15 91.9 6.0 48 3-50 2-50 (215)
57 PRK05541 adenylylsulfate kinas 99.1 2.4E-11 5.3E-16 94.5 0.2 36 2-37 8-49 (176)
58 PRK06696 uridine kinase; Valid 99.1 6.5E-11 1.4E-15 95.7 2.2 35 2-36 23-63 (223)
59 COG0563 Adk Adenylate kinase a 99.0 2.8E-09 6.1E-14 83.5 10.8 49 3-51 2-51 (178)
60 PRK13477 bifunctional pantoate 99.0 5.1E-09 1.1E-13 94.0 13.4 37 2-38 285-322 (512)
61 cd02023 UMPK Uridine monophosp 99.0 6.9E-11 1.5E-15 93.6 0.4 35 3-37 1-39 (198)
62 TIGR01313 therm_gnt_kin carboh 99.0 4.4E-10 9.5E-15 86.2 4.6 32 4-35 1-33 (163)
63 PRK14527 adenylate kinase; Pro 99.0 4.3E-09 9.4E-14 83.0 10.4 43 2-44 7-50 (191)
64 PRK00300 gmk guanylate kinase; 99.0 1.3E-09 2.9E-14 86.5 7.3 58 105-163 129-186 (205)
65 TIGR02322 phosphon_PhnN phosph 99.0 6.4E-09 1.4E-13 80.9 11.0 56 103-160 121-177 (179)
66 PLN02674 adenylate kinase 99.0 2.1E-09 4.6E-14 88.1 8.4 49 2-50 32-81 (244)
67 PRK06217 hypothetical protein; 99.0 3.5E-10 7.6E-15 88.7 3.2 37 1-37 1-38 (183)
68 cd02026 PRK Phosphoribulokinas 99.0 4.5E-10 9.7E-15 93.7 3.6 40 107-146 134-178 (273)
69 PRK05416 glmZ(sRNA)-inactivati 98.9 1.8E-09 3.9E-14 90.6 7.0 31 1-31 6-36 (288)
70 PF13207 AAA_17: AAA domain; P 98.9 5.9E-10 1.3E-14 81.1 3.5 33 3-35 1-34 (121)
71 PLN02459 probable adenylate ki 98.9 2.3E-09 5E-14 88.5 7.1 50 3-52 31-81 (261)
72 COG0283 Cmk Cytidylate kinase 98.9 5.1E-08 1.1E-12 77.8 14.4 37 2-38 5-42 (222)
73 COG0194 Gmk Guanylate kinase [ 98.9 1.1E-09 2.4E-14 85.5 4.4 61 101-162 123-183 (191)
74 PRK07429 phosphoribulokinase; 98.9 9.5E-10 2.1E-14 93.8 4.3 39 108-146 144-187 (327)
75 PRK00023 cmk cytidylate kinase 98.9 4.1E-08 8.9E-13 79.7 13.5 37 2-38 5-42 (225)
76 PRK09518 bifunctional cytidyla 98.9 3.5E-08 7.6E-13 92.3 13.6 38 1-38 1-39 (712)
77 KOG3079 Uridylate kinase/adeny 98.9 9.4E-09 2E-13 80.0 8.1 154 2-160 9-192 (195)
78 PRK07667 uridine kinase; Provi 98.9 5.6E-10 1.2E-14 88.4 1.3 37 2-38 18-60 (193)
79 PTZ00088 adenylate kinase 1; P 98.9 4.7E-09 1E-13 85.4 6.3 48 2-49 7-55 (229)
80 PRK08118 topology modulation p 98.8 2.4E-09 5.3E-14 83.0 3.9 37 1-37 1-38 (167)
81 PHA02530 pseT polynucleotide k 98.8 2.6E-09 5.6E-14 89.7 4.4 39 2-40 3-43 (300)
82 PRK08233 hypothetical protein; 98.8 5.9E-09 1.3E-13 80.9 5.7 33 2-34 4-38 (182)
83 cd00227 CPT Chloramphenicol (C 98.8 8.2E-09 1.8E-13 80.3 5.7 37 2-38 3-42 (175)
84 cd01428 ADK Adenylate kinase ( 98.8 7.6E-09 1.6E-13 81.1 5.5 51 3-53 1-52 (194)
85 PRK11860 bifunctional 3-phosph 98.7 2.7E-07 5.9E-12 85.7 14.3 37 2-38 443-480 (661)
86 PRK09270 nucleoside triphospha 98.7 2.4E-08 5.1E-13 81.1 6.2 44 104-147 172-223 (229)
87 PF03668 ATP_bind_2: P-loop AT 98.7 5.5E-08 1.2E-12 80.9 7.7 30 1-30 1-30 (284)
88 PLN02348 phosphoribulokinase 98.7 9.5E-09 2E-13 89.1 3.2 39 107-145 201-244 (395)
89 smart00072 GuKc Guanylate kina 98.7 2.4E-08 5.2E-13 78.4 5.2 58 103-161 125-182 (184)
90 PLN02842 nucleotide kinase 98.7 4E-08 8.7E-13 87.8 6.9 48 6-53 2-50 (505)
91 TIGR00041 DTMP_kinase thymidyl 98.7 2.1E-08 4.6E-13 78.9 4.1 28 2-29 4-35 (195)
92 PF13671 AAA_33: AAA domain; P 98.6 3.5E-08 7.6E-13 73.5 4.8 38 3-40 1-39 (143)
93 TIGR03574 selen_PSTK L-seryl-t 98.6 3E-08 6.5E-13 81.4 4.6 36 3-38 1-42 (249)
94 PRK13973 thymidylate kinase; P 98.6 6E-08 1.3E-12 77.9 5.2 30 2-31 4-37 (213)
95 PTZ00301 uridine kinase; Provi 98.6 1.9E-07 4.1E-12 75.0 7.9 34 2-35 4-45 (210)
96 TIGR00235 udk uridine kinase. 98.6 2.3E-07 5E-12 74.0 8.3 33 2-34 7-43 (207)
97 PRK06547 hypothetical protein; 98.6 4.1E-08 8.9E-13 76.5 3.7 37 1-37 15-52 (172)
98 PRK00698 tmk thymidylate kinas 98.6 1.1E-07 2.4E-12 75.2 6.2 22 2-23 4-25 (205)
99 PF00406 ADK: Adenylate kinase 98.6 8.5E-08 1.8E-12 72.7 5.1 46 6-51 1-47 (151)
100 PRK05537 bifunctional sulfate 98.6 1.1E-07 2.3E-12 86.8 6.4 36 3-38 394-436 (568)
101 PRK14738 gmk guanylate kinase; 98.6 1.4E-07 3E-12 75.5 6.4 58 105-162 137-195 (206)
102 PHA02575 1 deoxynucleoside mon 98.6 8E-08 1.7E-12 77.5 4.8 36 3-38 2-39 (227)
103 PRK00889 adenylylsulfate kinas 98.6 2.6E-08 5.7E-13 77.3 1.9 38 2-39 5-48 (175)
104 PRK13975 thymidylate kinase; P 98.5 1.7E-07 3.8E-12 73.7 6.2 25 2-26 3-28 (196)
105 cd02021 GntK Gluconate kinase 98.5 4.7E-08 1E-12 73.8 2.7 35 3-37 1-36 (150)
106 PRK07261 topology modulation p 98.5 5.4E-08 1.2E-12 75.6 2.9 34 3-36 2-36 (171)
107 cd02020 CMPK Cytidine monophos 98.5 6.1E-08 1.3E-12 72.4 3.1 35 3-37 1-36 (147)
108 PRK03846 adenylylsulfate kinas 98.5 3.5E-08 7.5E-13 78.3 1.8 38 2-39 25-68 (198)
109 COG3265 GntK Gluconate kinase 98.5 1.1E-06 2.3E-11 66.4 9.5 28 8-35 2-30 (161)
110 cd01672 TMPK Thymidine monopho 98.5 1.7E-07 3.8E-12 73.2 5.5 30 2-31 1-34 (200)
111 PRK09825 idnK D-gluconate kina 98.5 1.3E-06 2.7E-11 68.3 10.0 32 3-34 5-37 (176)
112 PRK14529 adenylate kinase; Pro 98.5 2.4E-07 5.1E-12 75.1 5.2 43 1-44 1-44 (223)
113 COG4185 Uncharacterized protei 98.4 4.2E-09 9.1E-14 80.3 -5.0 138 3-146 4-158 (187)
114 KOG3354 Gluconate kinase [Carb 98.4 1.6E-07 3.4E-12 71.5 2.5 33 3-35 14-47 (191)
115 PLN02772 guanylate kinase 98.4 9E-07 2E-11 76.9 6.9 59 104-163 259-320 (398)
116 PRK11545 gntK gluconate kinase 98.3 3.4E-07 7.3E-12 70.6 3.4 28 7-34 1-29 (163)
117 PF00625 Guanylate_kin: Guanyl 98.3 4.8E-07 1E-11 70.8 3.9 54 107-161 129-182 (183)
118 COG3709 Uncharacterized compon 98.3 5.9E-06 1.3E-10 63.4 9.2 57 102-160 124-181 (192)
119 PRK12339 2-phosphoglycerate ki 98.3 1.1E-06 2.4E-11 70.0 5.2 39 2-40 4-43 (197)
120 cd02024 NRK1 Nicotinamide ribo 98.2 8.3E-07 1.8E-11 70.1 2.8 34 3-36 1-36 (187)
121 PF13521 AAA_28: AAA domain; P 98.2 8.2E-07 1.8E-11 68.1 2.3 36 3-40 1-36 (163)
122 COG0645 Predicted kinase [Gene 98.2 7.1E-07 1.5E-11 68.8 1.6 39 2-40 2-41 (170)
123 PRK12338 hypothetical protein; 98.2 2.7E-06 5.9E-11 72.3 5.0 39 2-40 5-44 (319)
124 COG0529 CysC Adenylylsulfate k 98.1 2.2E-06 4.9E-11 66.6 3.7 39 2-40 24-68 (197)
125 COG1428 Deoxynucleoside kinase 98.1 2.5E-06 5.4E-11 68.1 3.6 40 1-40 4-48 (216)
126 COG0572 Udk Uridine kinase [Nu 98.1 2.8E-06 6E-11 68.3 3.7 36 2-37 9-48 (218)
127 PF13238 AAA_18: AAA domain; P 98.1 2.8E-06 6E-11 61.7 3.0 21 4-24 1-21 (129)
128 PF01583 APS_kinase: Adenylyls 98.0 3.4E-06 7.5E-11 64.6 3.2 37 2-38 3-45 (156)
129 cd02019 NK Nucleoside/nucleoti 98.0 3.4E-06 7.4E-11 55.7 2.7 22 3-24 1-22 (69)
130 PF00485 PRK: Phosphoribulokin 98.0 3.1E-06 6.8E-11 66.8 2.9 21 3-23 1-21 (194)
131 PF00004 AAA: ATPase family as 98.0 4E-06 8.7E-11 61.1 3.2 28 4-31 1-29 (132)
132 PRK05506 bifunctional sulfate 98.0 2.6E-06 5.7E-11 78.8 2.6 38 2-39 461-504 (632)
133 COG4088 Predicted nucleotide k 98.0 4.1E-06 8.9E-11 66.8 2.8 31 1-31 1-35 (261)
134 PRK15453 phosphoribulokinase; 98.0 4.3E-06 9.4E-11 69.8 2.9 35 2-36 6-46 (290)
135 PLN02165 adenylate isopentenyl 98.0 6.2E-06 1.3E-10 70.4 3.8 32 3-34 45-77 (334)
136 COG1660 Predicted P-loop-conta 98.0 6.3E-06 1.4E-10 67.6 3.6 30 1-30 1-30 (286)
137 PRK04220 2-phosphoglycerate ki 98.0 1.1E-05 2.4E-10 68.0 5.1 37 2-38 93-131 (301)
138 COG3911 Predicted ATPase [Gene 98.0 8.6E-06 1.9E-10 61.8 3.8 30 1-30 9-38 (183)
139 cd02028 UMPK_like Uridine mono 97.9 6.1E-06 1.3E-10 64.6 2.8 34 3-36 1-40 (179)
140 PRK12269 bifunctional cytidyla 97.9 1.2E-05 2.6E-10 76.5 5.2 37 2-38 35-72 (863)
141 cd02027 APSK Adenosine 5'-phos 97.9 9.2E-06 2E-10 61.7 3.1 37 3-39 1-43 (149)
142 PRK00091 miaA tRNA delta(2)-is 97.9 1.3E-05 2.8E-10 68.0 4.1 33 2-34 5-38 (307)
143 cd02025 PanK Pantothenate kina 97.9 7.1E-06 1.5E-10 66.4 2.3 32 3-34 1-40 (220)
144 PF13189 Cytidylate_kin2: Cyti 97.9 3E-05 6.4E-10 60.7 5.5 38 3-41 1-39 (179)
145 TIGR00455 apsK adenylylsulfate 97.8 2.7E-05 5.9E-10 60.8 5.2 38 2-39 19-62 (184)
146 PF06414 Zeta_toxin: Zeta toxi 97.8 1.2E-05 2.6E-10 63.8 3.2 37 2-38 16-56 (199)
147 TIGR01223 Pmev_kin_anim phosph 97.8 0.00012 2.5E-09 57.1 8.3 41 3-43 1-46 (182)
148 COG2019 AdkA Archaeal adenylat 97.8 2.5E-05 5.4E-10 60.3 4.5 39 1-39 4-44 (189)
149 PRK05439 pantothenate kinase; 97.8 1.2E-05 2.5E-10 68.3 2.8 34 2-35 87-128 (311)
150 TIGR03575 selen_PSTK_euk L-ser 97.8 1.3E-05 2.9E-10 68.7 3.3 33 4-36 2-41 (340)
151 cd02029 PRK_like Phosphoribulo 97.8 8.4E-06 1.8E-10 67.6 1.7 34 3-36 1-40 (277)
152 PHA00729 NTP-binding motif con 97.8 2.5E-05 5.5E-10 63.3 4.2 24 2-25 18-42 (226)
153 TIGR00554 panK_bact pantothena 97.8 1.6E-05 3.5E-10 66.9 2.8 34 2-35 63-104 (290)
154 PRK05800 cobU adenosylcobinami 97.7 2.9E-05 6.2E-10 60.4 3.7 31 1-31 1-34 (170)
155 COG1618 Predicted nucleotide k 97.7 2.6E-05 5.7E-10 59.9 3.4 28 1-28 5-36 (179)
156 TIGR01663 PNK-3'Pase polynucle 97.7 3.2E-05 6.9E-10 70.0 4.3 34 2-35 370-404 (526)
157 cd01673 dNK Deoxyribonucleosid 97.7 2.7E-05 5.8E-10 61.2 3.0 28 3-30 1-29 (193)
158 PLN02840 tRNA dimethylallyltra 97.7 3.8E-05 8.3E-10 67.6 4.2 32 2-33 22-54 (421)
159 TIGR00174 miaA tRNA isopenteny 97.7 3.2E-05 6.9E-10 65.0 3.4 31 3-33 1-32 (287)
160 PRK09169 hypothetical protein; 97.7 4.4E-05 9.6E-10 77.3 5.0 52 3-59 2112-2164(2316)
161 PF01745 IPT: Isopentenyl tran 97.7 2.6E-05 5.7E-10 62.5 2.4 35 1-35 1-36 (233)
162 PF08433 KTI12: Chromatin asso 97.6 3.9E-05 8.5E-10 64.0 2.8 35 1-35 1-41 (270)
163 PRK12337 2-phosphoglycerate ki 97.6 0.00012 2.5E-09 65.2 5.4 37 2-38 256-294 (475)
164 PRK08099 bifunctional DNA-bind 97.5 8E-05 1.7E-09 65.4 3.9 30 1-30 219-249 (399)
165 PLN02748 tRNA dimethylallyltra 97.5 6.9E-05 1.5E-09 66.9 3.4 32 2-33 23-55 (468)
166 PRK06761 hypothetical protein; 97.5 7.7E-05 1.7E-09 62.5 3.4 30 2-31 4-34 (282)
167 PF10662 PduV-EutP: Ethanolami 97.5 8.7E-05 1.9E-09 56.0 3.3 23 1-23 1-23 (143)
168 TIGR00150 HI0065_YjeE ATPase, 97.5 0.0001 2.2E-09 55.0 3.7 25 3-27 24-49 (133)
169 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00013 2.7E-09 52.5 3.3 33 2-35 16-48 (107)
170 smart00382 AAA ATPases associa 97.4 0.00014 3E-09 52.3 3.6 22 2-23 3-24 (148)
171 PF07728 AAA_5: AAA domain (dy 97.4 0.00011 2.4E-09 54.5 2.8 26 4-29 2-28 (139)
172 COG0125 Tmk Thymidylate kinase 97.4 0.00072 1.6E-08 54.3 7.4 29 1-29 3-35 (208)
173 COG4619 ABC-type uncharacteriz 97.4 0.00014 3.1E-09 56.5 3.1 22 3-24 31-52 (223)
174 TIGR00390 hslU ATP-dependent p 97.4 0.00014 3.1E-09 64.0 3.4 33 2-34 48-81 (441)
175 cd02030 NDUO42 NADH:Ubiquinone 97.4 0.00015 3.2E-09 58.4 3.2 27 3-29 1-28 (219)
176 TIGR01526 nadR_NMN_Atrans nico 97.3 0.0002 4.3E-09 61.3 3.9 29 1-29 162-191 (325)
177 cd01918 HprK_C HprK/P, the bif 97.3 0.00019 4.2E-09 54.6 3.4 30 4-33 17-46 (149)
178 PF07931 CPT: Chloramphenicol 97.3 0.00029 6.3E-09 55.0 4.4 37 2-38 2-41 (174)
179 PLN02318 phosphoribulokinase/u 97.3 0.00018 4E-09 65.7 3.7 33 2-34 66-100 (656)
180 PF03308 ArgK: ArgK protein; 97.3 0.00019 4.1E-09 59.2 3.3 32 2-33 30-67 (266)
181 COG4639 Predicted kinase [Gene 97.3 0.00032 7E-09 53.6 4.3 36 2-38 3-38 (168)
182 PRK05201 hslU ATP-dependent pr 97.3 0.00018 3.9E-09 63.4 3.3 32 2-33 51-83 (443)
183 PLN02796 D-glycerate 3-kinase 97.3 0.00018 3.8E-09 61.9 3.2 22 2-23 101-122 (347)
184 smart00763 AAA_PrkA PrkA AAA d 97.3 0.0002 4.3E-09 61.8 3.4 24 2-25 79-103 (361)
185 PF02367 UPF0079: Uncharacteri 97.3 0.00029 6.3E-09 51.9 3.7 26 2-27 16-42 (123)
186 cd00009 AAA The AAA+ (ATPases 97.3 0.00027 5.8E-09 51.4 3.5 29 3-31 21-53 (151)
187 PF00005 ABC_tran: ABC transpo 97.3 0.00021 4.6E-09 52.6 2.9 21 3-23 13-33 (137)
188 PF13555 AAA_29: P-loop contai 97.3 0.00029 6.3E-09 45.6 3.0 21 3-23 25-45 (62)
189 COG0324 MiaA tRNA delta(2)-iso 97.3 0.00031 6.8E-09 59.4 4.1 34 1-34 3-37 (308)
190 PF03266 NTPase_1: NTPase; In 97.2 0.00021 4.5E-09 55.5 2.7 21 3-23 1-21 (168)
191 cd00071 GMPK Guanosine monopho 97.2 0.00021 4.6E-09 53.4 2.7 21 3-23 1-21 (137)
192 PRK13695 putative NTPase; Prov 97.2 0.00025 5.3E-09 54.9 3.1 26 3-28 2-31 (174)
193 cd03116 MobB Molybdenum is an 97.2 0.00031 6.6E-09 54.1 3.5 23 1-23 1-23 (159)
194 PF13173 AAA_14: AAA domain 97.2 0.0003 6.4E-09 51.8 3.3 35 2-36 3-42 (128)
195 PF01591 6PF2K: 6-phosphofruct 97.2 0.0012 2.6E-08 53.5 7.0 40 2-41 13-58 (222)
196 TIGR01166 cbiO cobalt transpor 97.2 0.00027 5.8E-09 55.4 3.1 21 3-23 20-40 (190)
197 TIGR00960 3a0501s02 Type II (G 97.2 0.00029 6.3E-09 56.3 3.1 21 3-23 31-51 (216)
198 PF05496 RuvB_N: Holliday junc 97.2 0.00043 9.3E-09 56.1 4.0 27 3-29 52-79 (233)
199 PF08303 tRNA_lig_kinase: tRNA 97.2 0.00022 4.7E-09 55.0 2.2 34 4-37 2-37 (168)
200 COG1136 SalX ABC-type antimicr 97.2 0.00031 6.8E-09 57.0 3.2 21 3-23 33-53 (226)
201 PRK10751 molybdopterin-guanine 97.2 0.00034 7.3E-09 54.6 3.2 22 1-22 6-27 (173)
202 cd03269 ABC_putative_ATPase Th 97.2 0.00032 6.9E-09 55.8 3.2 21 3-23 28-48 (210)
203 COG1126 GlnQ ABC-type polar am 97.2 0.00041 9E-09 55.8 3.8 29 3-31 30-63 (240)
204 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00032 6.9E-09 55.8 3.2 21 3-23 29-49 (211)
205 cd03292 ABC_FtsE_transporter F 97.2 0.00033 7E-09 55.8 3.2 21 3-23 29-49 (214)
206 TIGR02673 FtsE cell division A 97.2 0.00033 7.1E-09 55.8 3.1 21 3-23 30-50 (214)
207 cd03261 ABC_Org_Solvent_Resist 97.2 0.00032 7E-09 56.8 3.1 21 3-23 28-48 (235)
208 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00033 7.1E-09 56.0 3.1 21 3-23 32-52 (218)
209 PF05729 NACHT: NACHT domain 97.2 0.00033 7.2E-09 52.7 3.0 21 2-22 1-21 (166)
210 cd04163 Era Era subfamily. Er 97.2 0.00041 8.8E-09 51.6 3.4 23 2-24 4-26 (168)
211 COG1116 TauB ABC-type nitrate/ 97.1 0.00035 7.6E-09 57.2 3.2 21 3-23 31-51 (248)
212 cd03259 ABC_Carb_Solutes_like 97.1 0.00035 7.6E-09 55.7 3.2 21 3-23 28-48 (213)
213 cd03224 ABC_TM1139_LivF_branch 97.1 0.00034 7.4E-09 56.0 3.1 21 3-23 28-48 (222)
214 cd03115 SRP The signal recogni 97.1 0.00052 1.1E-08 52.9 3.9 32 3-34 2-39 (173)
215 TIGR03608 L_ocin_972_ABC putat 97.1 0.00037 8.1E-09 55.1 3.2 21 3-23 26-46 (206)
216 cd03238 ABC_UvrA The excision 97.1 0.00037 8E-09 54.5 3.0 20 3-22 23-42 (176)
217 cd03265 ABC_DrrA DrrA is the A 97.1 0.00038 8.2E-09 55.8 3.2 21 3-23 28-48 (220)
218 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00038 8.3E-09 55.2 3.1 21 3-23 28-48 (205)
219 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00038 8.3E-09 55.8 3.1 21 3-23 32-52 (220)
220 PRK14729 miaA tRNA delta(2)-is 97.1 0.00049 1.1E-08 58.2 3.9 37 2-40 5-41 (300)
221 KOG0744 AAA+-type ATPase [Post 97.1 0.00035 7.6E-09 59.4 2.9 28 2-29 178-206 (423)
222 cd03235 ABC_Metallic_Cations A 97.1 0.00036 7.7E-09 55.6 2.9 21 3-23 27-47 (213)
223 cd03263 ABC_subfamily_A The AB 97.1 0.00039 8.5E-09 55.6 3.2 21 3-23 30-50 (220)
224 TIGR02211 LolD_lipo_ex lipopro 97.1 0.0004 8.6E-09 55.6 3.2 21 3-23 33-53 (221)
225 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0004 8.6E-09 54.4 3.1 21 3-23 27-47 (177)
226 cd03257 ABC_NikE_OppD_transpor 97.1 0.00039 8.4E-09 55.8 3.1 21 3-23 33-53 (228)
227 PRK09087 hypothetical protein; 97.1 0.00054 1.2E-08 55.6 3.9 35 3-37 46-81 (226)
228 TIGR00750 lao LAO/AO transport 97.1 0.00053 1.2E-08 57.9 4.0 32 1-32 34-71 (300)
229 cd03283 ABC_MutS-like MutS-lik 97.1 0.00041 8.9E-09 55.2 3.1 20 3-22 27-46 (199)
230 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00037 8.1E-09 56.3 2.9 21 3-23 28-48 (236)
231 cd03256 ABC_PhnC_transporter A 97.1 0.0004 8.7E-09 56.3 3.1 21 3-23 29-49 (241)
232 cd03230 ABC_DR_subfamily_A Thi 97.1 0.00044 9.5E-09 53.5 3.1 21 3-23 28-48 (173)
233 cd03229 ABC_Class3 This class 97.1 0.00044 9.6E-09 53.7 3.2 21 3-23 28-48 (178)
234 PF03215 Rad17: Rad17 cell cyc 97.1 0.00049 1.1E-08 62.4 3.9 29 2-30 46-75 (519)
235 PRK15177 Vi polysaccharide exp 97.1 0.00042 9.1E-09 55.6 3.1 21 3-23 15-35 (213)
236 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00043 9.3E-09 55.1 3.2 21 3-23 28-48 (213)
237 PRK11629 lolD lipoprotein tran 97.1 0.00043 9.2E-09 56.1 3.2 21 3-23 37-57 (233)
238 cd03264 ABC_drug_resistance_li 97.1 0.00038 8.3E-09 55.4 2.8 21 3-23 27-47 (211)
239 PRK10584 putative ABC transpor 97.1 0.00044 9.4E-09 55.7 3.2 21 3-23 38-58 (228)
240 PRK13541 cytochrome c biogenes 97.1 0.00045 9.7E-09 54.4 3.2 21 3-23 28-48 (195)
241 cd03301 ABC_MalK_N The N-termi 97.1 0.00045 9.7E-09 55.0 3.2 21 3-23 28-48 (213)
242 COG1120 FepC ABC-type cobalami 97.1 0.00044 9.5E-09 57.2 3.1 29 3-31 30-63 (258)
243 cd03266 ABC_NatA_sodium_export 97.1 0.00044 9.6E-09 55.2 3.1 21 3-23 33-53 (218)
244 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00052 1.1E-08 56.9 3.6 27 3-29 23-50 (262)
245 cd03258 ABC_MetN_methionine_tr 97.1 0.00045 9.7E-09 55.8 3.2 21 3-23 33-53 (233)
246 PLN00020 ribulose bisphosphate 97.1 0.00073 1.6E-08 58.7 4.6 38 2-39 149-189 (413)
247 cd03223 ABCD_peroxisomal_ALDP 97.1 0.00047 1E-08 53.1 3.1 21 3-23 29-49 (166)
248 cd03260 ABC_PstB_phosphate_tra 97.1 0.00046 1E-08 55.5 3.2 21 3-23 28-48 (227)
249 TIGR02315 ABC_phnC phosphonate 97.1 0.00045 9.7E-09 56.1 3.1 21 3-23 30-50 (243)
250 cd03218 ABC_YhbG The ABC trans 97.1 0.00045 9.8E-09 55.7 3.1 21 3-23 28-48 (232)
251 COG1134 TagH ABC-type polysacc 97.1 0.00047 1E-08 56.3 3.1 21 3-23 55-75 (249)
252 cd03296 ABC_CysA_sulfate_impor 97.1 0.00046 1E-08 56.0 3.1 21 3-23 30-50 (239)
253 COG1124 DppF ABC-type dipeptid 97.1 0.00047 1E-08 56.3 3.1 21 3-23 35-55 (252)
254 TIGR01978 sufC FeS assembly AT 97.1 0.00046 1E-08 56.0 3.1 21 3-23 28-48 (243)
255 cd03232 ABC_PDR_domain2 The pl 97.1 0.00049 1.1E-08 54.2 3.1 21 3-23 35-55 (192)
256 TIGR03410 urea_trans_UrtE urea 97.1 0.00047 1E-08 55.6 3.1 21 3-23 28-48 (230)
257 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.00064 1.4E-08 53.9 3.8 21 2-22 29-49 (200)
258 COG1703 ArgK Putative periplas 97.0 0.0004 8.7E-09 58.3 2.6 21 2-22 52-72 (323)
259 PRK14242 phosphate transporter 97.0 0.0005 1.1E-08 56.3 3.2 21 3-23 34-54 (253)
260 PRK10247 putative ABC transpor 97.0 0.00051 1.1E-08 55.4 3.2 21 3-23 35-55 (225)
261 PRK11248 tauB taurine transpor 97.0 0.00051 1.1E-08 56.6 3.2 21 3-23 29-49 (255)
262 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.00053 1.1E-08 55.6 3.2 21 3-23 29-49 (236)
263 cd03247 ABCC_cytochrome_bd The 97.0 0.00056 1.2E-08 53.1 3.1 21 3-23 30-50 (178)
264 PRK14241 phosphate transporter 97.0 0.00053 1.2E-08 56.4 3.2 21 3-23 32-52 (258)
265 PRK13540 cytochrome c biogenes 97.0 0.00056 1.2E-08 54.1 3.2 21 3-23 29-49 (200)
266 cd03237 ABC_RNaseL_inhibitor_d 97.0 0.00054 1.2E-08 56.3 3.1 21 3-23 27-47 (246)
267 PRK14250 phosphate ABC transpo 97.0 0.00055 1.2E-08 55.8 3.1 21 3-23 31-51 (241)
268 TIGR01189 ccmA heme ABC export 97.0 0.00058 1.3E-08 53.9 3.2 21 3-23 28-48 (198)
269 TIGR01650 PD_CobS cobaltochela 97.0 0.00058 1.3E-08 58.3 3.3 28 3-30 66-94 (327)
270 CHL00181 cbbX CbbX; Provisiona 97.0 0.001 2.2E-08 56.0 4.8 37 3-39 61-107 (287)
271 cd03297 ABC_ModC_molybdenum_tr 97.0 0.00056 1.2E-08 54.6 3.1 21 3-23 25-45 (214)
272 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.00057 1.2E-08 54.4 3.1 21 3-23 26-46 (211)
273 PRK10744 pstB phosphate transp 97.0 0.00056 1.2E-08 56.3 3.2 21 3-23 41-61 (260)
274 cd03251 ABCC_MsbA MsbA is an e 97.0 0.00057 1.2E-08 55.2 3.1 21 3-23 30-50 (234)
275 PRK10646 ADP-binding protein; 97.0 0.00078 1.7E-08 51.5 3.7 25 3-27 30-55 (153)
276 PRK14247 phosphate ABC transpo 97.0 0.00057 1.2E-08 55.8 3.1 21 3-23 31-51 (250)
277 PRK11124 artP arginine transpo 97.0 0.00058 1.3E-08 55.5 3.2 21 3-23 30-50 (242)
278 PF01926 MMR_HSR1: 50S ribosom 97.0 0.00064 1.4E-08 48.8 3.0 21 3-23 1-21 (116)
279 TIGR02770 nickel_nikD nickel i 97.0 0.00057 1.2E-08 55.2 3.1 21 3-23 14-34 (230)
280 PRK14494 putative molybdopteri 97.0 0.00081 1.8E-08 54.8 3.9 28 1-28 1-32 (229)
281 TIGR01184 ntrCD nitrate transp 97.0 0.00059 1.3E-08 55.2 3.2 21 3-23 13-33 (230)
282 TIGR02323 CP_lyasePhnK phospho 97.0 0.00058 1.3E-08 55.9 3.1 21 3-23 31-51 (253)
283 cd03268 ABC_BcrA_bacitracin_re 97.0 0.00061 1.3E-08 54.1 3.2 21 3-23 28-48 (208)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0006 1.3E-08 51.3 3.0 21 3-23 28-48 (144)
285 PRK05342 clpX ATP-dependent pr 97.0 0.0006 1.3E-08 60.2 3.4 31 3-33 110-141 (412)
286 PRK11264 putative amino-acid A 97.0 0.0006 1.3E-08 55.7 3.2 21 3-23 31-51 (250)
287 TIGR02324 CP_lyasePhnL phospho 97.0 0.00061 1.3E-08 54.7 3.1 21 3-23 36-56 (224)
288 PRK13539 cytochrome c biogenes 97.0 0.00062 1.3E-08 54.2 3.2 21 3-23 30-50 (207)
289 cd03216 ABC_Carb_Monos_I This 97.0 0.00065 1.4E-08 52.1 3.2 21 3-23 28-48 (163)
290 cd03215 ABC_Carb_Monos_II This 97.0 0.00062 1.3E-08 53.1 3.1 21 3-23 28-48 (182)
291 KOG0635 Adenosine 5'-phosphosu 97.0 0.00052 1.1E-08 52.4 2.5 37 3-39 33-75 (207)
292 PLN03046 D-glycerate 3-kinase; 97.0 0.00065 1.4E-08 59.9 3.4 22 2-23 213-234 (460)
293 PRK14251 phosphate ABC transpo 97.0 0.00062 1.4E-08 55.6 3.2 21 3-23 32-52 (251)
294 cd03246 ABCC_Protease_Secretio 97.0 0.00067 1.5E-08 52.4 3.2 21 3-23 30-50 (173)
295 cd03254 ABCC_Glucan_exporter_l 97.0 0.00063 1.4E-08 54.8 3.1 21 3-23 31-51 (229)
296 PRK09435 membrane ATPase/prote 97.0 0.00068 1.5E-08 58.2 3.4 32 2-33 57-94 (332)
297 cd03234 ABCG_White The White s 97.0 0.00063 1.4E-08 54.8 3.1 21 3-23 35-55 (226)
298 TIGR03771 anch_rpt_ABC anchore 97.0 0.00064 1.4E-08 54.8 3.1 21 3-23 8-28 (223)
299 PRK14267 phosphate ABC transpo 97.0 0.00064 1.4E-08 55.7 3.1 21 3-23 32-52 (253)
300 PRK10895 lipopolysaccharide AB 97.0 0.00065 1.4E-08 55.2 3.2 21 3-23 31-51 (241)
301 cd03233 ABC_PDR_domain1 The pl 97.0 0.00059 1.3E-08 54.2 2.9 21 3-23 35-55 (202)
302 PRK10771 thiQ thiamine transpo 97.0 0.00064 1.4E-08 55.0 3.1 21 3-23 27-47 (232)
303 PRK14255 phosphate ABC transpo 97.0 0.00065 1.4E-08 55.6 3.1 21 3-23 33-53 (252)
304 TIGR03005 ectoine_ehuA ectoine 97.0 0.00064 1.4E-08 55.6 3.1 21 3-23 28-48 (252)
305 cd00544 CobU Adenosylcobinamid 97.0 0.00078 1.7E-08 52.3 3.4 25 3-27 1-26 (169)
306 PRK14493 putative bifunctional 97.0 0.00071 1.5E-08 56.5 3.4 22 1-22 1-22 (274)
307 TIGR00972 3a0107s01c2 phosphat 97.0 0.00067 1.4E-08 55.4 3.2 21 3-23 29-49 (247)
308 PRK10908 cell division protein 96.9 0.00069 1.5E-08 54.4 3.2 21 3-23 30-50 (222)
309 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.9 0.00067 1.5E-08 55.0 3.1 21 3-23 31-51 (238)
310 PRK14274 phosphate ABC transpo 96.9 0.00069 1.5E-08 55.7 3.2 21 3-23 40-60 (259)
311 PRK13543 cytochrome c biogenes 96.9 0.00069 1.5E-08 54.2 3.1 21 3-23 39-59 (214)
312 cd03248 ABCC_TAP TAP, the Tran 96.9 0.0007 1.5E-08 54.4 3.2 21 3-23 42-62 (226)
313 PRK13768 GTPase; Provisional 96.9 0.00098 2.1E-08 55.0 4.1 34 1-34 2-41 (253)
314 cd01131 PilT Pilus retraction 96.9 0.00074 1.6E-08 53.6 3.2 21 3-23 3-23 (198)
315 PRK14248 phosphate ABC transpo 96.9 0.00069 1.5E-08 56.0 3.2 21 3-23 49-69 (268)
316 cd03245 ABCC_bacteriocin_expor 96.9 0.00071 1.5E-08 54.1 3.1 21 3-23 32-52 (220)
317 PRK09493 glnQ glutamine ABC tr 96.9 0.0007 1.5E-08 55.0 3.1 21 3-23 29-49 (240)
318 cd03228 ABCC_MRP_Like The MRP 96.9 0.00076 1.6E-08 52.0 3.2 21 3-23 30-50 (171)
319 PRK11831 putative ABC transpor 96.9 0.00068 1.5E-08 56.2 3.1 21 3-23 35-55 (269)
320 PRK03992 proteasome-activating 96.9 0.0014 3E-08 57.4 5.2 34 3-36 167-203 (389)
321 PRK11701 phnK phosphonate C-P 96.9 0.0007 1.5E-08 55.7 3.1 21 3-23 34-54 (258)
322 PRK14256 phosphate ABC transpo 96.9 0.00071 1.5E-08 55.4 3.2 21 3-23 32-52 (252)
323 TIGR00064 ftsY signal recognit 96.9 0.00095 2.1E-08 55.7 3.9 34 1-34 72-111 (272)
324 cd02034 CooC The accessory pro 96.9 0.001 2.3E-08 48.4 3.7 30 4-33 2-37 (116)
325 PRK13538 cytochrome c biogenes 96.9 0.00074 1.6E-08 53.6 3.1 21 3-23 29-49 (204)
326 TIGR00101 ureG urease accessor 96.9 0.00084 1.8E-08 53.4 3.4 22 2-23 2-23 (199)
327 PRK14974 cell division protein 96.9 0.0013 2.8E-08 56.6 4.8 34 2-35 141-180 (336)
328 PRK14262 phosphate ABC transpo 96.9 0.00073 1.6E-08 55.2 3.1 21 3-23 31-51 (250)
329 cd03252 ABCC_Hemolysin The ABC 96.9 0.00074 1.6E-08 54.7 3.1 21 3-23 30-50 (237)
330 PRK14269 phosphate ABC transpo 96.9 0.00075 1.6E-08 55.1 3.2 21 3-23 30-50 (246)
331 PRK11247 ssuB aliphatic sulfon 96.9 0.00074 1.6E-08 55.8 3.2 21 3-23 40-60 (257)
332 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.00073 1.6E-08 54.5 3.1 21 3-23 50-70 (224)
333 cd03250 ABCC_MRP_domain1 Domai 96.9 0.00077 1.7E-08 53.4 3.1 21 3-23 33-53 (204)
334 cd03214 ABC_Iron-Siderophores_ 96.9 0.0008 1.7E-08 52.4 3.2 21 3-23 27-47 (180)
335 PRK10575 iron-hydroxamate tran 96.9 0.00068 1.5E-08 56.0 2.9 21 3-23 39-59 (265)
336 COG3839 MalK ABC-type sugar tr 96.9 0.00073 1.6E-08 58.0 3.1 21 3-23 31-51 (338)
337 cd03267 ABC_NatA_like Similar 96.9 0.00076 1.7E-08 54.8 3.1 21 3-23 49-69 (236)
338 PRK14245 phosphate ABC transpo 96.9 0.00076 1.7E-08 55.1 3.2 21 3-23 31-51 (250)
339 PRK15056 manganese/iron transp 96.9 0.00074 1.6E-08 56.1 3.1 21 3-23 35-55 (272)
340 PRK11300 livG leucine/isoleuci 96.9 0.00073 1.6E-08 55.3 3.1 21 3-23 33-53 (255)
341 PRK13638 cbiO cobalt transport 96.9 0.00071 1.5E-08 56.1 3.0 21 3-23 29-49 (271)
342 PF03029 ATP_bind_1: Conserved 96.9 0.00055 1.2E-08 56.1 2.3 32 6-37 1-38 (238)
343 cd03243 ABC_MutS_homologs The 96.9 0.00075 1.6E-08 53.5 3.0 20 3-22 31-50 (202)
344 CHL00131 ycf16 sulfate ABC tra 96.9 0.00071 1.5E-08 55.3 2.9 21 3-23 35-55 (252)
345 cd03244 ABCC_MRP_domain2 Domai 96.9 0.0008 1.7E-08 53.8 3.2 21 3-23 32-52 (221)
346 cd03295 ABC_OpuCA_Osmoprotecti 96.9 0.00079 1.7E-08 54.8 3.2 21 3-23 29-49 (242)
347 PRK13648 cbiO cobalt transport 96.9 0.00077 1.7E-08 55.8 3.1 21 3-23 37-57 (269)
348 COG1763 MobB Molybdopterin-gua 96.9 0.00087 1.9E-08 51.7 3.2 28 1-28 2-33 (161)
349 cd03253 ABCC_ATM1_transporter 96.9 0.00079 1.7E-08 54.4 3.2 21 3-23 29-49 (236)
350 PRK09544 znuC high-affinity zi 96.9 0.00079 1.7E-08 55.4 3.2 21 3-23 32-52 (251)
351 KOG3308 Uncharacterized protei 96.9 0.00091 2E-08 53.2 3.3 35 2-36 5-41 (225)
352 PRK14239 phosphate transporter 96.9 0.00078 1.7E-08 55.0 3.1 21 3-23 33-53 (252)
353 PRK13645 cbiO cobalt transport 96.9 0.00077 1.7E-08 56.5 3.1 21 3-23 39-59 (289)
354 PRK13649 cbiO cobalt transport 96.9 0.00077 1.7E-08 56.1 3.1 21 3-23 35-55 (280)
355 TIGR01277 thiQ thiamine ABC tr 96.9 0.00083 1.8E-08 53.6 3.1 21 3-23 26-46 (213)
356 PRK11614 livF leucine/isoleuci 96.9 0.00075 1.6E-08 54.7 2.9 21 3-23 33-53 (237)
357 PRK14253 phosphate ABC transpo 96.9 0.00083 1.8E-08 54.9 3.2 21 3-23 31-51 (249)
358 PF13245 AAA_19: Part of AAA d 96.9 0.0011 2.3E-08 44.7 3.2 21 3-23 12-33 (76)
359 cd03231 ABC_CcmA_heme_exporter 96.9 0.00087 1.9E-08 53.1 3.2 21 3-23 28-48 (201)
360 KOG1970 Checkpoint RAD17-RFC c 96.9 0.00078 1.7E-08 60.7 3.1 28 3-30 112-140 (634)
361 PRK14268 phosphate ABC transpo 96.9 0.00084 1.8E-08 55.2 3.1 21 3-23 40-60 (258)
362 PRK14261 phosphate ABC transpo 96.9 0.00084 1.8E-08 55.0 3.1 21 3-23 34-54 (253)
363 TIGR02880 cbbX_cfxQ probable R 96.9 0.0021 4.5E-08 54.0 5.5 37 3-39 60-106 (284)
364 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00089 1.9E-08 53.6 3.2 21 3-23 29-49 (218)
365 PRK14235 phosphate transporter 96.9 0.00088 1.9E-08 55.5 3.2 21 3-23 47-67 (267)
366 PRK14240 phosphate transporter 96.9 0.00087 1.9E-08 54.8 3.1 21 3-23 31-51 (250)
367 COG3842 PotA ABC-type spermidi 96.9 0.00061 1.3E-08 58.8 2.3 20 3-22 33-52 (352)
368 PRK14259 phosphate ABC transpo 96.9 0.00086 1.9E-08 55.6 3.1 21 3-23 41-61 (269)
369 PRK14273 phosphate ABC transpo 96.9 0.00088 1.9E-08 54.9 3.2 21 3-23 35-55 (254)
370 TIGR02881 spore_V_K stage V sp 96.9 0.0008 1.7E-08 55.6 2.9 21 3-23 44-64 (261)
371 TIGR03411 urea_trans_UrtD urea 96.9 0.00088 1.9E-08 54.4 3.1 21 3-23 30-50 (242)
372 PRK14270 phosphate ABC transpo 96.9 0.00091 2E-08 54.7 3.2 21 3-23 32-52 (251)
373 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.0009 2E-08 55.3 3.2 21 3-23 28-48 (255)
374 TIGR01288 nodI ATP-binding ABC 96.9 0.00088 1.9E-08 56.6 3.2 21 3-23 32-52 (303)
375 PRK14244 phosphate ABC transpo 96.9 0.00091 2E-08 54.7 3.2 21 3-23 33-53 (251)
376 TIGR02769 nickel_nikE nickel i 96.8 0.00089 1.9E-08 55.3 3.1 21 3-23 39-59 (265)
377 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.00088 1.9E-08 55.2 3.0 21 3-23 32-52 (254)
378 TIGR01188 drrA daunorubicin re 96.8 0.0009 2E-08 56.5 3.2 21 3-23 21-41 (302)
379 PRK13632 cbiO cobalt transport 96.8 0.0009 2E-08 55.5 3.1 21 3-23 37-57 (271)
380 cd03294 ABC_Pro_Gly_Bertaine T 96.8 0.00092 2E-08 55.5 3.2 21 3-23 52-72 (269)
381 TIGR01241 FtsH_fam ATP-depende 96.8 0.0022 4.8E-08 57.9 5.8 29 3-31 90-119 (495)
382 cd01130 VirB11-like_ATPase Typ 96.8 0.001 2.2E-08 52.2 3.2 21 3-23 27-47 (186)
383 PRK10418 nikD nickel transport 96.8 0.00092 2E-08 54.9 3.1 21 3-23 31-51 (254)
384 PRK14238 phosphate transporter 96.8 0.00094 2E-08 55.5 3.2 21 3-23 52-72 (271)
385 CHL00195 ycf46 Ycf46; Provisio 96.8 0.00091 2E-08 60.3 3.3 30 3-32 261-291 (489)
386 cd03369 ABCC_NFT1 Domain 2 of 96.8 0.00098 2.1E-08 52.9 3.2 21 3-23 36-56 (207)
387 PRK14237 phosphate transporter 96.8 0.00096 2.1E-08 55.3 3.2 21 3-23 48-68 (267)
388 PRK13548 hmuV hemin importer A 96.8 0.00093 2E-08 55.0 3.1 21 3-23 30-50 (258)
389 PF08477 Miro: Miro-like prote 96.8 0.0012 2.6E-08 47.1 3.4 25 3-27 1-25 (119)
390 TIGR03740 galliderm_ABC gallid 96.8 0.00098 2.1E-08 53.5 3.2 21 3-23 28-48 (223)
391 TIGR00073 hypB hydrogenase acc 96.8 0.0011 2.5E-08 52.7 3.5 23 1-23 22-44 (207)
392 COG4167 SapF ABC-type antimicr 96.8 0.00094 2E-08 52.8 2.8 21 3-23 41-61 (267)
393 KOG3877 NADH:ubiquinone oxidor 96.8 0.001 2.2E-08 55.5 3.1 36 2-37 72-111 (393)
394 KOG3078 Adenylate kinase [Nucl 96.8 0.0015 3.3E-08 53.2 4.0 49 3-51 17-66 (235)
395 TIGR00382 clpX endopeptidase C 96.8 0.0012 2.7E-08 58.1 3.8 30 3-32 118-148 (413)
396 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0011 2.4E-08 50.3 3.1 21 3-23 27-47 (157)
397 PRK09580 sufC cysteine desulfu 96.8 0.00094 2E-08 54.4 2.9 22 3-24 29-50 (248)
398 PF13401 AAA_22: AAA domain; P 96.8 0.001 2.2E-08 48.4 2.9 21 3-23 6-26 (131)
399 PRK10619 histidine/lysine/argi 96.8 0.001 2.3E-08 54.6 3.2 21 3-23 33-53 (257)
400 PRK13640 cbiO cobalt transport 96.8 0.001 2.2E-08 55.6 3.1 21 3-23 35-55 (282)
401 COG0378 HypB Ni2+-binding GTPa 96.8 0.0011 2.3E-08 52.6 3.0 35 1-35 13-52 (202)
402 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.0011 2.3E-08 52.6 3.1 21 3-23 28-48 (200)
403 KOG0707 Guanylate kinase [Nucl 96.8 0.0028 6.1E-08 51.3 5.5 55 106-160 163-220 (231)
404 PRK14272 phosphate ABC transpo 96.8 0.0011 2.3E-08 54.3 3.2 21 3-23 32-52 (252)
405 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0011 2.3E-08 52.4 3.0 21 3-23 37-57 (194)
406 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0014 3.1E-08 59.9 4.1 47 4-53 226-275 (802)
407 PRK13651 cobalt transporter AT 96.8 0.001 2.2E-08 56.3 3.2 21 3-23 35-55 (305)
408 PRK14243 phosphate transporter 96.8 0.0011 2.3E-08 54.9 3.2 21 3-23 38-58 (264)
409 PRK13546 teichoic acids export 96.8 0.001 2.2E-08 55.2 3.1 21 3-23 52-72 (264)
410 PRK13547 hmuV hemin importer A 96.8 0.001 2.2E-08 55.4 3.1 21 3-23 29-49 (272)
411 PRK13652 cbiO cobalt transport 96.8 0.0011 2.3E-08 55.3 3.2 21 3-23 32-52 (277)
412 PRK14249 phosphate ABC transpo 96.8 0.0011 2.4E-08 54.2 3.2 21 3-23 32-52 (251)
413 PRK15112 antimicrobial peptide 96.8 0.0011 2.3E-08 55.0 3.1 21 3-23 41-61 (267)
414 PRK13647 cbiO cobalt transport 96.8 0.0011 2.3E-08 55.2 3.1 21 3-23 33-53 (274)
415 cd01120 RecA-like_NTPases RecA 96.8 0.00093 2E-08 49.8 2.5 21 3-23 1-21 (165)
416 PTZ00454 26S protease regulato 96.8 0.0026 5.6E-08 56.0 5.6 29 3-31 181-210 (398)
417 PRK03695 vitamin B12-transport 96.8 0.001 2.2E-08 54.6 2.9 21 3-23 24-44 (248)
418 PRK14265 phosphate ABC transpo 96.8 0.0011 2.4E-08 55.2 3.2 21 3-23 48-68 (274)
419 PRK14260 phosphate ABC transpo 96.8 0.0011 2.4E-08 54.5 3.2 21 3-23 35-55 (259)
420 PRK09984 phosphonate/organopho 96.8 0.0011 2.4E-08 54.6 3.1 21 3-23 32-52 (262)
421 COG0396 sufC Cysteine desulfur 96.8 0.0013 2.7E-08 53.5 3.3 30 3-32 32-62 (251)
422 TIGR03015 pepcterm_ATPase puta 96.8 0.0012 2.6E-08 54.3 3.2 21 3-23 45-65 (269)
423 TIGR01242 26Sp45 26S proteasom 96.8 0.0023 5E-08 55.4 5.1 29 3-31 158-187 (364)
424 KOG1532 GTPase XAB1, interacts 96.8 0.0022 4.7E-08 53.6 4.6 52 3-54 21-84 (366)
425 PRK11153 metN DL-methionine tr 96.8 0.0011 2.4E-08 57.0 3.1 21 3-23 33-53 (343)
426 TIGR00968 3a0106s01 sulfate AB 96.7 0.0012 2.6E-08 53.6 3.2 21 3-23 28-48 (237)
427 PRK13646 cbiO cobalt transport 96.7 0.0012 2.6E-08 55.3 3.2 21 3-23 35-55 (286)
428 PRK04195 replication factor C 96.7 0.0014 3E-08 59.0 3.7 29 3-31 41-70 (482)
429 TIGR02982 heterocyst_DevA ABC 96.7 0.0013 2.7E-08 52.8 3.2 21 3-23 33-53 (220)
430 PTZ00322 6-phosphofructo-2-kin 96.7 0.00044 9.5E-09 64.6 0.6 38 2-39 216-259 (664)
431 COG1117 PstB ABC-type phosphat 96.7 0.0012 2.7E-08 53.1 3.0 21 3-23 35-55 (253)
432 PRK13639 cbiO cobalt transport 96.7 0.0012 2.6E-08 54.9 3.1 21 3-23 30-50 (275)
433 PRK14258 phosphate ABC transpo 96.7 0.0013 2.7E-08 54.3 3.2 21 3-23 35-55 (261)
434 PRK11231 fecE iron-dicitrate t 96.7 0.0013 2.7E-08 54.1 3.1 21 3-23 30-50 (255)
435 PRK14275 phosphate ABC transpo 96.7 0.0013 2.7E-08 55.2 3.1 21 3-23 67-87 (286)
436 PRK14252 phosphate ABC transpo 96.7 0.0013 2.8E-08 54.3 3.2 21 3-23 44-64 (265)
437 PLN02924 thymidylate kinase 96.7 0.0015 3.3E-08 52.8 3.5 28 2-29 17-48 (220)
438 PRK14236 phosphate transporter 96.7 0.0013 2.8E-08 54.6 3.2 21 3-23 53-73 (272)
439 PRK10419 nikE nickel transport 96.7 0.0013 2.7E-08 54.6 3.1 21 3-23 40-60 (268)
440 cd03279 ABC_sbcCD SbcCD and ot 96.7 0.0012 2.5E-08 52.9 2.7 20 3-22 30-49 (213)
441 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0014 3E-08 51.1 3.0 21 2-22 1-21 (178)
442 PRK10253 iron-enterobactin tra 96.7 0.0012 2.7E-08 54.5 2.9 21 3-23 35-55 (265)
443 PRK13643 cbiO cobalt transport 96.7 0.0013 2.9E-08 55.1 3.1 21 3-23 34-54 (288)
444 cd03278 ABC_SMC_barmotin Barmo 96.7 0.0013 2.9E-08 52.1 2.9 21 3-23 24-44 (197)
445 PRK13637 cbiO cobalt transport 96.7 0.0014 3E-08 55.0 3.2 21 3-23 35-55 (287)
446 KOG1533 Predicted GTPase [Gene 96.7 0.00088 1.9E-08 54.6 1.9 31 4-34 5-41 (290)
447 COG1119 ModF ABC-type molybden 96.7 0.0013 2.8E-08 53.9 2.8 26 3-28 59-84 (257)
448 TIGR00176 mobB molybdopterin-g 96.7 0.0013 2.8E-08 50.3 2.7 26 3-28 1-30 (155)
449 PRK14266 phosphate ABC transpo 96.7 0.0014 3.1E-08 53.5 3.2 21 3-23 31-51 (250)
450 cd03272 ABC_SMC3_euk Eukaryoti 96.7 0.0013 2.8E-08 53.4 2.9 21 3-23 25-45 (243)
451 PF03205 MobB: Molybdopterin g 96.7 0.0016 3.6E-08 48.9 3.2 28 2-29 1-32 (140)
452 TIGR03873 F420-0_ABC_ATP propo 96.7 0.0014 2.9E-08 53.9 3.0 21 3-23 29-49 (256)
453 COG2274 SunT ABC-type bacterio 96.7 0.0015 3.2E-08 61.4 3.5 22 3-24 501-522 (709)
454 PRK14254 phosphate ABC transpo 96.7 0.0014 3.1E-08 54.8 3.2 21 3-23 67-87 (285)
455 PRK13650 cbiO cobalt transport 96.7 0.0015 3.1E-08 54.6 3.2 21 3-23 35-55 (279)
456 COG2074 2-phosphoglycerate kin 96.7 0.0023 5E-08 52.7 4.2 35 2-36 90-126 (299)
457 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.0014 3.1E-08 44.5 2.6 30 3-32 1-34 (99)
458 cd03300 ABC_PotA_N PotA is an 96.7 0.0015 3.3E-08 52.8 3.2 21 3-23 28-48 (232)
459 PRK13644 cbiO cobalt transport 96.7 0.0015 3.2E-08 54.4 3.2 21 3-23 30-50 (274)
460 PRK14271 phosphate ABC transpo 96.7 0.0015 3.3E-08 54.4 3.2 21 3-23 49-69 (276)
461 PRK13641 cbiO cobalt transport 96.7 0.0015 3.3E-08 54.7 3.2 21 3-23 35-55 (287)
462 PRK14246 phosphate ABC transpo 96.7 0.0015 3.3E-08 53.8 3.1 21 3-23 38-58 (257)
463 PRK14263 phosphate ABC transpo 96.6 0.0016 3.4E-08 53.8 3.2 21 3-23 36-56 (261)
464 cd03291 ABCC_CFTR1 The CFTR su 96.6 0.0015 3.4E-08 54.7 3.2 21 3-23 65-85 (282)
465 cd03112 CobW_like The function 96.6 0.0016 3.4E-08 49.9 3.0 21 3-23 2-22 (158)
466 PRK13633 cobalt transporter AT 96.6 0.0015 3.3E-08 54.4 3.1 21 3-23 38-58 (280)
467 PRK11022 dppD dipeptide transp 96.6 0.0015 3.3E-08 55.8 3.1 21 3-23 35-55 (326)
468 PRK11144 modC molybdate transp 96.6 0.0016 3.4E-08 56.3 3.1 21 3-23 26-46 (352)
469 PRK13635 cbiO cobalt transport 96.6 0.0016 3.5E-08 54.3 3.1 21 3-23 35-55 (279)
470 PHA02244 ATPase-like protein 96.6 0.0017 3.6E-08 56.4 3.3 30 3-32 121-151 (383)
471 KOG0731 AAA+-type ATPase conta 96.6 0.0035 7.6E-08 58.8 5.6 50 4-53 347-399 (774)
472 COG1122 CbiO ABC-type cobalt t 96.6 0.0016 3.4E-08 53.3 3.0 21 3-23 32-52 (235)
473 PRK13634 cbiO cobalt transport 96.6 0.0016 3.5E-08 54.6 3.1 21 3-23 35-55 (290)
474 PRK15093 antimicrobial peptide 96.6 0.0016 3.5E-08 55.7 3.2 21 3-23 35-55 (330)
475 PRK13537 nodulation ABC transp 96.6 0.0017 3.6E-08 55.1 3.2 21 3-23 35-55 (306)
476 TIGR03522 GldA_ABC_ATP gliding 96.6 0.0017 3.6E-08 54.9 3.2 21 3-23 30-50 (301)
477 PRK11000 maltose/maltodextrin 96.6 0.0016 3.6E-08 56.6 3.2 21 3-23 31-51 (369)
478 PF07475 Hpr_kinase_C: HPr Ser 96.6 0.0019 4.1E-08 50.1 3.1 32 4-35 21-52 (171)
479 cd03288 ABCC_SUR2 The SUR doma 96.6 0.0018 3.9E-08 53.3 3.2 21 3-23 49-69 (257)
480 PRK10463 hydrogenase nickel in 96.6 0.0016 3.5E-08 54.8 2.9 31 2-32 105-140 (290)
481 COG1341 Predicted GTPase or GT 96.6 0.0014 3.1E-08 57.0 2.6 39 3-41 75-119 (398)
482 cd03299 ABC_ModC_like Archeal 96.6 0.0018 4E-08 52.5 3.1 21 3-23 27-47 (235)
483 TIGR02142 modC_ABC molybdenum 96.6 0.0018 3.8E-08 56.0 3.2 21 3-23 25-45 (354)
484 cd03274 ABC_SMC4_euk Eukaryoti 96.6 0.002 4.4E-08 51.7 3.3 25 3-27 27-52 (212)
485 PRK13631 cbiO cobalt transport 96.6 0.0018 3.9E-08 55.2 3.2 21 3-23 54-74 (320)
486 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0016 3.6E-08 52.0 2.8 34 3-36 40-79 (226)
487 COG3840 ThiQ ABC-type thiamine 96.6 0.002 4.3E-08 50.9 3.0 30 3-32 27-61 (231)
488 TIGR00231 small_GTP small GTP- 96.6 0.0021 4.7E-08 46.9 3.2 22 2-23 2-23 (161)
489 PRK14264 phosphate ABC transpo 96.6 0.0019 4.1E-08 54.7 3.2 21 3-23 73-93 (305)
490 PRK13536 nodulation factor exp 96.6 0.0019 4E-08 55.7 3.2 21 3-23 69-89 (340)
491 PF13191 AAA_16: AAA ATPase do 96.6 0.0018 3.8E-08 49.8 2.8 21 2-22 25-45 (185)
492 PRK13642 cbiO cobalt transport 96.6 0.0019 4.1E-08 53.8 3.1 21 3-23 35-55 (277)
493 cd04155 Arl3 Arl3 subfamily. 96.6 0.002 4.4E-08 49.0 3.1 22 3-24 16-37 (173)
494 TIGR02314 ABC_MetN D-methionin 96.6 0.0019 4.1E-08 55.7 3.2 21 3-23 33-53 (343)
495 cd01876 YihA_EngB The YihA (En 96.6 0.0018 4E-08 48.2 2.8 20 4-23 2-21 (170)
496 PRK11308 dppF dipeptide transp 96.6 0.0019 4.1E-08 55.3 3.2 21 3-23 43-63 (327)
497 PF00910 RNA_helicase: RNA hel 96.6 0.0017 3.8E-08 46.3 2.5 20 4-23 1-20 (107)
498 cd03273 ABC_SMC2_euk Eukaryoti 96.5 0.002 4.4E-08 52.8 3.2 21 3-23 27-47 (251)
499 TIGR01243 CDC48 AAA family ATP 96.5 0.0031 6.8E-08 59.5 4.8 29 3-31 489-518 (733)
500 PRK07933 thymidylate kinase; V 96.5 0.002 4.3E-08 51.8 3.0 28 2-29 1-32 (213)
No 1
>PLN02422 dephospho-CoA kinase
Probab=100.00 E-value=1.3e-44 Score=293.14 Aligned_cols=195 Identities=73% Similarity=1.098 Sum_probs=180.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|||||++||||||++++|+++|+++||+|.+.|+++++++..+.+|.+.||++++.++|.+||+.|++.+|+||+.+
T Consensus 1 M~~igltG~igsGKstv~~~l~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHH---------------HHHH------------------hcchHhhhcCCCCHHHHHHHHHh
Q 029212 81 QLLNGLLAPYISLGIFMEVL---------------KLWI------------------KGCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~---------------~~~~------------------~~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
+.|++++||.|+..+.+.+. .+++ .+.+|+++|+|.|.+++.+|+++
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~ 160 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINA 160 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999887754331 1122 23459999999999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcCCCcchhhhchHHHHHHHHHHHHHHhhhccc
Q 029212 128 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNWTEFWLSRQGALSALVSVVVGVLIFRKV 195 (197)
Q Consensus 128 q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (197)
|++.+++.+.||++|+|+|++++++++++++++.+.+|.+|+|++-|++|+.+.+-++.+|++..||+
T Consensus 161 Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (232)
T PLN02422 161 QMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIRAPLTWKEFLRSRQGAFSVLASVIAGVLVCRKV 228 (232)
T ss_pred cCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHhcchHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999999999999886
No 2
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=267.76 Aligned_cols=179 Identities=50% Similarity=0.746 Sum_probs=161.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|.+||+||++|||||||++.|..+|+++||+|.++|+.++||.+.+..+.+.||.+++-++|.+||+.|++.+|+||+.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHHH---------------HHh------------------cchHhhhcCCCCHHHHHHHHHh
Q 029212 81 QLLNGLLAPYISLGIFMEVLKL---------------WIK------------------GCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~~---------------~~~------------------~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
+.+++++||.|+.++++++... |+. ..+|+++||+.|+++++.|+++
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~s 160 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENRLQS 160 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHHHHh
Confidence 9999999999999998876533 322 2349999999999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcCCCcchhhhchHHHH
Q 029212 128 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNWTEFWLSRQGAL 179 (197)
Q Consensus 128 q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~~~~~~~~~~~~~~~ 179 (197)
|+|.+++.+.||+||+|+|++++++++++.++..+.....|.+.+.+-++.+
T Consensus 161 Qmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~s~~~~~~~~~~~~~~ 212 (225)
T KOG3220|consen 161 QMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQKSIPKLLTRLSFLLLF 212 (225)
T ss_pred cCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988644555444444433
No 3
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=100.00 E-value=1.7e-39 Score=265.27 Aligned_cols=189 Identities=33% Similarity=0.494 Sum_probs=164.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~ 79 (197)
|.+|||||++|||||||+++|++ +|+++||||.++|++++++...+++|.+.||+.++.+||.+||++|++.+|+|++.
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 89999999999999999999998 79999999999999999999999999999999988878999999999999999999
Q ss_pred HHHHhhhhchhhHHHHHHHHH------------------------HHHHh-------------------cchHhhhcCCC
Q 029212 80 RQLLNGLLAPYISLGIFMEVL------------------------KLWIK-------------------GCKRLMARDRT 116 (197)
Q Consensus 80 ~~~l~~i~~p~i~~~~~~~i~------------------------~~~~~-------------------~~~Rl~~R~~~ 116 (197)
++.|++++||.|+..+...+. .+++. +.+|+++|+|.
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999877644332 11221 23499999999
Q ss_pred CHHHHHHHHHhCCCcccccCCCcEEEEcC--CCHHHHHHHHHHHHHHHhcC-CCcch--h-hhchHHHHHHHHHHHHHH
Q 029212 117 SEEDARNRINAQMPLDIKRNNADIVINNT--GTLDDLNEQVRKVLFEIKRP-LNWTE--F-WLSRQGALSALVSVVVGV 189 (197)
Q Consensus 117 s~e~i~~ri~~q~~~~~~~~~aD~vI~N~--~~~~~l~~~i~~ii~~l~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~ 189 (197)
+.+++++|+++|++..++...||++|+|+ +++++++++++++++.+... +.|.- . .-.|+|.++|..++-++.
T Consensus 161 s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSRQSNKRLTYIFGTVAAAAVGVAAAVGYVGY 239 (244)
T ss_pred CHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHhhCChHHHHHHHHCChHHHHHHHHHHHHhh
Confidence 99999999999999988899999999999 99999999999999887743 33332 2 556899999988776664
No 4
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=100.00 E-value=1.9e-38 Score=248.84 Aligned_cols=149 Identities=47% Similarity=0.716 Sum_probs=129.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~ 81 (197)
++|||||++||||||++++|+++|+++||||.++|++++++++.+..|.+.||++++.++|.+||+.|++.+|+|++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~ 80 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK 80 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhchhhHHHHHHHHHH-------------HH------------------HhcchHhhhcCCCCHHHHHHHHHhCCC
Q 029212 82 LLNGLLAPYISLGIFMEVLK-------------LW------------------IKGCKRLMARDRTSEEDARNRINAQMP 130 (197)
Q Consensus 82 ~l~~i~~p~i~~~~~~~i~~-------------~~------------------~~~~~Rl~~R~~~s~e~i~~ri~~q~~ 130 (197)
.|++++||.|+..+...+.. ++ +.+..|+++|+|++.+++.+|+++|++
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~~Q~~ 160 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIASQMP 160 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHHTS--
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHHhCCC
Confidence 99999999999987665432 11 123459999999999999999999999
Q ss_pred cccccCCCcEEEEcCCCHHH
Q 029212 131 LDIKRNNADIVINNTGTLDD 150 (197)
Q Consensus 131 ~~~~~~~aD~vI~N~~~~~~ 150 (197)
.+++++.||+||+|++++++
T Consensus 161 ~~~k~~~ad~vI~N~g~~~~ 180 (180)
T PF01121_consen 161 DEEKRKRADFVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHH-SEEEE-SSHHH-
T ss_pred HHHHHHhCCEEEECCCCCCC
Confidence 99999999999999998764
No 5
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=1.8e-36 Score=241.54 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=150.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|||||++||||||++++|+++|+++||+|.++|+++++++..+.++.+.||++++.++|.+||+.|++.+|+|++.+
T Consensus 1 m~~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHHH---------------------------------HHhcchHhhhcCCCCHHHHHHHHHh
Q 029212 81 QLLNGLLAPYISLGIFMEVLKL---------------------------------WIKGCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~~---------------------------------~~~~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
+.+++++||.|+..+...+... .+.+.+|+++|+|++.+++.+|++.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~ 160 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAA 160 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999987765443211 1123459999999999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcCC
Q 029212 128 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPL 166 (197)
Q Consensus 128 q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~~ 166 (197)
|++.++++..||++|+|++++++++++++.+++.+.++.
T Consensus 161 Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~~~ 199 (200)
T PRK14734 161 QIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILSRV 199 (200)
T ss_pred cCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHhcc
Confidence 999988889999999999999999999999999888764
No 6
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=2.9e-36 Score=240.40 Aligned_cols=161 Identities=34% Similarity=0.468 Sum_probs=144.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
.+|||||++||||||++++|++ +|++++|+|.+.++++++ +..+.++.+.||++++. +|.+||++|++.+|+|++.+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEAK 84 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999996 899999999999999986 56899999999999997 78999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHH------------HHHHh--------------------cchHhhhcCCCCHHHHHHHHHhC
Q 029212 81 QLLNGLLAPYISLGIFMEVL------------KLWIK--------------------GCKRLMARDRTSEEDARNRINAQ 128 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~------------~~~~~--------------------~~~Rl~~R~~~s~e~i~~ri~~q 128 (197)
+.|++++||.|+..+...+. .+++. +.+|+++|+|.+.+++.+|+++|
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~~Q 164 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQ 164 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 99999999999987754332 12222 23499999999999999999999
Q ss_pred CCcccccCCCcEEEEcCC-CHHHHHHHHHHHHHHHhc
Q 029212 129 MPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 129 ~~~~~~~~~aD~vI~N~~-~~~~l~~~i~~ii~~l~~ 164 (197)
++.+++.+.||+||+|++ +++++.+++..+++.+..
T Consensus 165 ~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~~ 201 (204)
T PRK14733 165 ISDKEREKIADFVIDNTELTDQELESKLITTINEITN 201 (204)
T ss_pred CCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999988753
No 7
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=100.00 E-value=7e-36 Score=237.11 Aligned_cols=162 Identities=47% Similarity=0.709 Sum_probs=146.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|+|||++||||||++++|+++|+++||+|.+.|+++++++..+.++.+.||++++.++|.+||+.|++.+|+|++.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHH-------------HHH------------------hcchHhhhcCCCCHHHHHHHHHhCC
Q 029212 81 QLLNGLLAPYISLGIFMEVLK-------------LWI------------------KGCKRLMARDRTSEEDARNRINAQM 129 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~-------------~~~------------------~~~~Rl~~R~~~s~e~i~~ri~~q~ 129 (197)
+.|++++||.|+..+...+.. +++ .+.+|+++|++.+.+++.+|+.+|+
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~ 161 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQM 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 999999999999887554321 111 2345999999999999999999999
Q ss_pred CcccccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 130 PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 130 ~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
+..++...||++|+|+++++++.++++++++.+
T Consensus 162 ~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~~ 194 (194)
T PRK00081 162 PREEKLARADDVIDNNGDLEELRKQVERLLQEL 194 (194)
T ss_pred CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 988888899999999999999999999988653
No 8
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=9.7e-36 Score=236.60 Aligned_cols=163 Identities=28% Similarity=0.435 Sum_probs=147.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~~ 82 (197)
+|||||++||||||++++|++.|+++||+|.++|+++++++..++++.+.||++++.++|.+||+.|++.+|+|++.++.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HhhhhchhhHHHHHHHHHH-------------HH------------------HhcchHhhhcCCCCHHHHHHHHHhCCCc
Q 029212 83 LNGLLAPYISLGIFMEVLK-------------LW------------------IKGCKRLMARDRTSEEDARNRINAQMPL 131 (197)
Q Consensus 83 l~~i~~p~i~~~~~~~i~~-------------~~------------------~~~~~Rl~~R~~~s~e~i~~ri~~q~~~ 131 (197)
|++++||.|+..+...+.. ++ +.+.+|+++|+|.+.+++.+|+.+|++.
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~~~ 160 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQLPI 160 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCCH
Confidence 9999999998866433321 11 1234599999999999999999999998
Q ss_pred ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 132 DIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 132 ~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
.++.+.||++|+|++++++++.+++++++.+.++
T Consensus 161 ~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 161 TEKLKRADYIVRNDGNREGLKEECKILYSTLLKK 194 (196)
T ss_pred HHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999887753
No 9
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=235.91 Aligned_cols=160 Identities=42% Similarity=0.710 Sum_probs=144.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhC-CCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCC-ccchHHHHhHhcCChH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG-EVDRSKLGQIVFSDSS 78 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~-G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~-~~dr~~l~~~vf~~~~ 78 (197)
|++|+|||++||||||++++|++. |++++|+|.+.|++++++++.++++.+.||++++.++| .+||+.|++.+|+|+.
T Consensus 1 ~~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 1 QRRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 678999999999999999999995 99999999999999999999999999999999998889 8999999999999999
Q ss_pred HHHHHhhhhchhhHHHHHHHHHH-------------HH------------------HhcchHhhhcCCCCHHHHHHHHHh
Q 029212 79 KRQLLNGLLAPYISLGIFMEVLK-------------LW------------------IKGCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 79 ~~~~l~~i~~p~i~~~~~~~i~~-------------~~------------------~~~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
.++.|++++||.|+..+...+.. ++ +.+.+|+++|+|.+.+++.+|+.+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri~~ 160 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARINA 160 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999877544321 11 123459999999999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 128 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 128 q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
|++.+++...||++|+|++++++++++++++++
T Consensus 161 Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 161 QWPLEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred CCCHHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 999888889999999999999999999998864
No 10
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-35 Score=234.62 Aligned_cols=165 Identities=41% Similarity=0.596 Sum_probs=149.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|||||+|||||||++++|++.|++++|||.++|+++++++..++++.+.||.++.++||.+||++|++.+|+|+..+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~ 81 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR 81 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHH------------HHHHHH------------------hcchHhhhcCCCCHHHHHHHHHhCCC
Q 029212 81 QLLNGLLAPYISLGIFME------------VLKLWI------------------KGCKRLMARDRTSEEDARNRINAQMP 130 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~------------i~~~~~------------------~~~~Rl~~R~~~s~e~i~~ri~~q~~ 130 (197)
+.+++++||.++.++... ++.+++ .+.+|+++|++.|.+++..++.+|++
T Consensus 82 ~~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~ 161 (201)
T COG0237 82 LKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRD 161 (201)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCC
Confidence 999999999998875311 122222 23559999999999999999999999
Q ss_pred cccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 131 LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 131 ~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
.++++..||++++|+++++++.+++.++++.+...
T Consensus 162 ~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 162 LEEKLALADVVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred HHHHHhhcCChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 98889999999999999999999999999987753
No 11
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=100.00 E-value=2.4e-33 Score=221.24 Aligned_cols=154 Identities=42% Similarity=0.651 Sum_probs=138.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCC-CCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKAND-VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G-~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~ 81 (197)
+|+|||+|||||||++++|++.| +++||+|.++|+++++++.++.++.+.||++++.++|.+||..|+..+|.||+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999965 99999999999999999999999999999999988999999999999999999999
Q ss_pred HHhhhhchhhHHHHHHHHHHH--------------H------------------HhcchHhhhcCCCCHHHHHHHHHhCC
Q 029212 82 LLNGLLAPYISLGIFMEVLKL--------------W------------------IKGCKRLMARDRTSEEDARNRINAQM 129 (197)
Q Consensus 82 ~l~~i~~p~i~~~~~~~i~~~--------------~------------------~~~~~Rl~~R~~~s~e~i~~ri~~q~ 129 (197)
.+++++||.++..+...+... + ..+..|+++|+|.+.+++.+|+.+|+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~ 160 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQM 160 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 999999999988775543211 1 12345999999999999999999999
Q ss_pred CcccccCCCcEEEEcCCCHHHHHHHHH
Q 029212 130 PLDIKRNNADIVINNTGTLDDLNEQVR 156 (197)
Q Consensus 130 ~~~~~~~~aD~vI~N~~~~~~l~~~i~ 156 (197)
+..++...||++|+|+++++++.++++
T Consensus 161 ~~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 161 DIEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred CHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 887788899999999999999999886
No 12
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=1e-32 Score=221.23 Aligned_cols=163 Identities=33% Similarity=0.458 Sum_probs=143.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCC--Cc--cchHHHHhHhcCCh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPN--GE--VDRSKLGQIVFSDS 77 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~--~~--~dr~~l~~~vf~~~ 77 (197)
.+|||||++||||||++++|+++|++++|+|.++|+++.+++..++.+...||++++..+ +. +||+.|++.+|.++
T Consensus 6 ~~igitG~igsGKSt~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~ 85 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDP 85 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCH
Confidence 479999999999999999999999999999999999999988889999999999998643 43 89999999999999
Q ss_pred HHHHHHhhhhchhhHHHHHHHHHHH---------------------------------HHhcchHhhhcCCCCHHHHHHH
Q 029212 78 SKRQLLNGLLAPYISLGIFMEVLKL---------------------------------WIKGCKRLMARDRTSEEDARNR 124 (197)
Q Consensus 78 ~~~~~l~~i~~p~i~~~~~~~i~~~---------------------------------~~~~~~Rl~~R~~~s~e~i~~r 124 (197)
..++.|++++||.|+..+...+... .+.+.+|+++|++.+.+++.+|
T Consensus 86 ~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~R 165 (208)
T PRK14731 86 EKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRR 165 (208)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999998765543221 1123459999988999999999
Q ss_pred HHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 125 INAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 125 i~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
++.|.+..++.+.||++|+|+++++++.++++++++.+..
T Consensus 166 i~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~~ 205 (208)
T PRK14731 166 IAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLLQ 205 (208)
T ss_pred HHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999998778888999999999999999999999987753
No 13
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=238.56 Aligned_cols=188 Identities=37% Similarity=0.551 Sum_probs=162.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|||||++||||||++++|+++|+++||+|.+++++++++...+.+|++.||++++.++|.+||+.|++++|.|++.+
T Consensus 1 m~~IgltG~igsGKStv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999999888999999999999998899999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHH-------------HH------------------HhcchHhhhcCCCCHHHHHHHHHhCC
Q 029212 81 QLLNGLLAPYISLGIFMEVLK-------------LW------------------IKGCKRLMARDRTSEEDARNRINAQM 129 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~-------------~~------------------~~~~~Rl~~R~~~s~e~i~~ri~~q~ 129 (197)
+.+++++||.|...+...+.. ++ ....+|+++|+|.+.+++..++..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~Q~ 160 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAAQA 160 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 999999999999765443321 11 12345999888999999999999999
Q ss_pred CcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC------------------CCcchhhhchHHHHHHHHHHHHH
Q 029212 130 PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP------------------LNWTEFWLSRQGALSALVSVVVG 188 (197)
Q Consensus 130 ~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 188 (197)
+.+++.+.||++|+|+++.+++.+++..+++.+.-| ...+|.|+--|--.-..+.-++|
T Consensus 161 ~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp~W~~~f~~e~~~l~~~l~ 237 (395)
T PRK03333 161 SDEQRRAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPADPSWPAQAQRIVARLKTAAG 237 (395)
T ss_pred ChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCCCcHHHHHHHHHHHHHhcC
Confidence 988888899999999999999999999988765543 23677787777776666665555
No 14
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.98 E-value=5.3e-32 Score=212.22 Aligned_cols=147 Identities=50% Similarity=0.778 Sum_probs=131.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~~ 82 (197)
+|+|||++||||||++++|+++|+++||+|.+.|+++++++..+.++.+.||++++..+|.+||+.|++.+|.|++.++.
T Consensus 1 ii~itG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~ 80 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HhhhhchhhHHHHHHHHHH-------------HHH------------------hcchHhhhcCCCCHHHHHHHHHhCCCc
Q 029212 83 LNGLLAPYISLGIFMEVLK-------------LWI------------------KGCKRLMARDRTSEEDARNRINAQMPL 131 (197)
Q Consensus 83 l~~i~~p~i~~~~~~~i~~-------------~~~------------------~~~~Rl~~R~~~s~e~i~~ri~~q~~~ 131 (197)
|++++||.|+..+...+.. +++ .+.+|+++|+|.+.+++.+|+..|++.
T Consensus 81 l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~Q~~~ 160 (179)
T cd02022 81 LEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIASQMPL 160 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCH
Confidence 9999999999877544321 111 234599999999999999999999998
Q ss_pred ccccCCCcEEEEcCCCHH
Q 029212 132 DIKRNNADIVINNTGTLD 149 (197)
Q Consensus 132 ~~~~~~aD~vI~N~~~~~ 149 (197)
.++...||++|+|+++++
T Consensus 161 ~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 161 EEKRARADFVIDNSGSLE 178 (179)
T ss_pred HHHHHhCCEEEECcCCCC
Confidence 888899999999998754
No 15
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.81 E-value=5.7e-20 Score=141.92 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=103.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh------
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------ 73 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------ 73 (197)
|+.|.++|+|||||||+++.|++ ++++++|+|.++++.. ++.+++|++..|++.|+. +++..+.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~---g~sI~eIF~~~GE~~FR~---~E~~vl~~l~~~~~~V 75 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT---GMSIAEIFEEEGEEGFRR---LETEVLKELLEEDNAV 75 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH---CcCHHHHHHHHhHHHHHH---HHHHHHHHHhhcCCeE
Confidence 45799999999999999999998 9999999999998875 478999999999999983 5555554443
Q ss_pred -------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhh---cC---CCCH-HHHHHHHHhCCCcccccCCCc
Q 029212 74 -------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMA---RD---RTSE-EDARNRINAQMPLDIKRNNAD 139 (197)
Q Consensus 74 -------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~---R~---~~s~-e~i~~ri~~q~~~~~~~~~aD 139 (197)
+.+++++..|.+. +..|+ +...++..++|+.. |+ +.++ +.+++.++.+.|. |.+.||
T Consensus 76 iaTGGG~v~~~enr~~l~~~-g~vv~------L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~--Y~e~a~ 146 (172)
T COG0703 76 IATGGGAVLSEENRNLLKKR-GIVVY------LDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPL--YREVAD 146 (172)
T ss_pred EECCCccccCHHHHHHHHhC-CeEEE------EeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHH--HHHhCc
Confidence 4456666666542 12222 23445666777762 22 2334 5677777777666 566799
Q ss_pred EEEEcCCCHHHHHHHHHHHHHH
Q 029212 140 IVINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 140 ~vI~N~~~~~~l~~~i~~ii~~ 161 (197)
++++++...++..+++...+..
T Consensus 147 ~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 147 FIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred EEecCCCCcHHHHHHHHHHHHH
Confidence 9999887546566666555543
No 16
>PRK01184 hypothetical protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=139.81 Aligned_cols=157 Identities=25% Similarity=0.275 Sum_probs=93.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCC---h
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD---S 77 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~---~ 77 (197)
|++|+|+|+|||||||+++.++++|++++++|++.++.+...+ ++.+.+.+|+.... .+..++..++.+ +
T Consensus 1 ~~~i~l~G~~GsGKsT~a~~~~~~g~~~i~~~d~lr~~~~~~~--~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~ 73 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDVIREEVKKRG--LEPTDENIGKVAID-----LRKELGMDAVAKRTVP 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHcCCcEEEhhHHHHHHHHHcC--CCCCcHHHHHHHHH-----HHHHHChHHHHHHHHH
Confidence 8899999999999999999777799999999777766653211 11122333332211 011111111100 0
Q ss_pred HHHH------HHhhhhchhhHHHHHHHH---------HHHHHhcchHhhhcC----CCCHHHHHHHHHhCCC--cccccC
Q 029212 78 SKRQ------LLNGLLAPYISLGIFMEV---------LKLWIKGCKRLMARD----RTSEEDARNRINAQMP--LDIKRN 136 (197)
Q Consensus 78 ~~~~------~l~~i~~p~i~~~~~~~i---------~~~~~~~~~Rl~~R~----~~s~e~i~~ri~~q~~--~~~~~~ 136 (197)
.... .++.+.++.-...+...+ ....+...+|++.|+ +.+.+++.+|+..|.+ ..++++
T Consensus 74 ~i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~ 153 (184)
T PRK01184 74 KIREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIA 153 (184)
T ss_pred HHHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHH
Confidence 0000 001100000000000001 112334567988885 3567889999988844 566778
Q ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 137 NADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 137 ~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
.||++|+|+++++++.++++++++.+..
T Consensus 154 ~ad~vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 154 LADYMIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred hcCEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987765
No 17
>PRK13948 shikimate kinase; Provisional
Probab=99.72 E-value=1.1e-17 Score=131.40 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=98.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHH------------
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKL------------ 69 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l------------ 69 (197)
.|+|+|+|||||||+++.|++ +|++++|+|.++++... ...+++++.+|+..|++ ++...+
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g---~si~~if~~~Ge~~fR~---~E~~~l~~l~~~~~~VIa 85 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG---KSIPEIFRHLGEAYFRR---CEAEVVRRLTRLDYAVIS 85 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh---CCHHHHHHHhCHHHHHH---HHHHHHHHHHhcCCeEEE
Confidence 699999999999999999997 99999999999988763 46789999999999873 222222
Q ss_pred -HhHhcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhc--C----CCCHHHHHHHHHhCCCcccccCCCcEEE
Q 029212 70 -GQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMAR--D----RTSEEDARNRINAQMPLDIKRNNADIVI 142 (197)
Q Consensus 70 -~~~vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R--~----~~s~e~i~~ri~~q~~~~~~~~~aD~vI 142 (197)
+..++.++++++.+.+. ++.|+. ....+...+|+..+ + +.+.+++.+.++.+.+. |..||++|
T Consensus 86 ~GgG~v~~~~n~~~l~~~-g~vV~L------~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~---Y~~a~~~i 155 (182)
T PRK13948 86 LGGGTFMHEENRRKLLSR-GPVVVL------WASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPV---YRQATIHV 155 (182)
T ss_pred CCCcEEcCHHHHHHHHcC-CeEEEE------ECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHH---HHhCCEEE
Confidence 22345567777666543 333331 22334445566322 1 12235566555555443 35599999
Q ss_pred EcCC-CHHHHHHHHHHHHHHH
Q 029212 143 NNTG-TLDDLNEQVRKVLFEI 162 (197)
Q Consensus 143 ~N~~-~~~~l~~~i~~ii~~l 162 (197)
++++ +++++.++|.+.+...
T Consensus 156 ~t~~~~~~ei~~~i~~~l~~~ 176 (182)
T PRK13948 156 STDGRRSEEVVEEIVEKLWAW 176 (182)
T ss_pred ECCCCCHHHHHHHHHHHHHHH
Confidence 9886 7888888887777653
No 18
>PLN02199 shikimate kinase
Probab=99.66 E-value=2.7e-16 Score=131.01 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=99.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH--------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI-------- 72 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~-------- 72 (197)
..|.|+|+|||||||+++.|++ +|+++||+|.++++.+. +..+++|++.+|++.|++ .+...|.+.
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~--G~sI~eIf~~~GE~~FR~---~E~e~L~~L~~~~~~VI 177 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN--GTSVAEIFVHHGENFFRG---KETDALKKLSSRYQVVV 177 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc--CCCHHHHHHHhCHHHHHH---HHHHHHHHHHhcCCEEE
Confidence 3689999999999999999998 99999999999999753 568999999999999983 344444332
Q ss_pred -----hcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhh-----cCC---CC-------HHHHHHHHHhCCCcc
Q 029212 73 -----VFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMA-----RDR---TS-------EEDARNRINAQMPLD 132 (197)
Q Consensus 73 -----vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~-----R~~---~s-------~e~i~~ri~~q~~~~ 132 (197)
+..++++++.+.. +..|+ +...++...+|+.. |+- .+ .+.+.+.++.+.|.
T Consensus 178 StGGG~V~~~~n~~~L~~--G~vV~------Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl- 248 (303)
T PLN02199 178 STGGGAVIRPINWKYMHK--GISIW------LDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA- 248 (303)
T ss_pred ECCCcccCCHHHHHHHhC--CeEEE------EECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH-
Confidence 2345555555542 22333 23344555667663 321 12 24455555555554
Q ss_pred cccCCCcEEEE------------cCC-CHHHHHHHHHHHHHHHhc
Q 029212 133 IKRNNADIVIN------------NTG-TLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 133 ~~~~~aD~vI~------------N~~-~~~~l~~~i~~ii~~l~~ 164 (197)
|..||++|+ +++ +++++..+|.+.+..+..
T Consensus 249 --Y~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 249 --YTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred --HHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 445999998 444 788888877777766554
No 19
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.63 E-value=6.5e-16 Score=117.47 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=99.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
++|.|.|+||||||||++.|++ +|+++|++..+.|++.+.-++.+.+.- +++++-..-|..+|++.. +.+-.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~-~~AE~~p~iD~~iD~rq~-e~a~~~---- 74 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFS-RYAEEDPEIDKEIDRRQK-ELAKEG---- 74 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHH-HHHhcCchhhHHHHHHHH-HHHHcC----
Confidence 3599999999999999999998 999999999999999988888777654 344433332334554332 111111
Q ss_pred HHHhhhhchhhHHHHHH-------HHHHHHHhcchHhhhcCCCCHHHHHHHHHhCCC-c-----------ccccCCCcEE
Q 029212 81 QLLNGLLAPYISLGIFM-------EVLKLWIKGCKRLMARDRTSEEDARNRINAQMP-L-----------DIKRNNADIV 141 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~-------~i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~-~-----------~~~~~~aD~v 141 (197)
+-++...+..++.. .+.+.+..+.+|+++|+|.+.+++.+.+..+.. + ..-+..+|.|
T Consensus 75 ---nvVlegrLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLV 151 (179)
T COG1102 75 ---NVVLEGRLAGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLV 151 (179)
T ss_pred ---CeEEhhhhHHHHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEE
Confidence 11111122222222 123455678899999999988877654433311 1 0114568899
Q ss_pred EEcCC-CHHHHHHHHHHHHHHHhcC
Q 029212 142 INNTG-TLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 142 I~N~~-~~~~l~~~i~~ii~~l~~~ 165 (197)
|+++. ++++...-+...+..+..+
T Consensus 152 inTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 152 INTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred EecccCCHHHHHHHHHHHHHhhccc
Confidence 99886 7777777777777666543
No 20
>PRK08356 hypothetical protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=120.03 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=85.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHH-HHHhcccccCCCCccchHHHHhHhc------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKV-VAAFGEDILLPNGEVDRSKLGQIVF------ 74 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i-~~~~G~~~~~~~~~~dr~~l~~~vf------ 74 (197)
++|+|+|+|||||||+|+.|++.|+++|++++..++..+..+..+.-+ ...|.... ..+.-++...+..-.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEP-TRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCcEEeCCCcccccccccccccccccHHHHhhcc-ccccHHHHHHHHHHhcCcHHHH
Confidence 579999999999999999998899999998654433322211111000 00000000 0000011111111001
Q ss_pred ------------------CChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCCC------CHHHHHHHHHhCCC
Q 029212 75 ------------------SDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDRT------SEEDARNRINAQMP 130 (197)
Q Consensus 75 ------------------~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~~------s~e~i~~ri~~q~~ 130 (197)
.++...+.+...-+..|+ +........+|+..|+.. +.+++.++...|..
T Consensus 85 ~~~~~~~~~~~~ividG~r~~~q~~~l~~~~~~vi~------l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~ 158 (195)
T PRK08356 85 RLAVDKKRNCKNIAIDGVRSRGEVEAIKRMGGKVIY------VEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEK 158 (195)
T ss_pred HHHHHHhccCCeEEEcCcCCHHHHHHHHhcCCEEEE------EECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 111121112110000000 112234456799888643 67777777766643
Q ss_pred ---cccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 131 ---LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 131 ---~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
..++.+.||++|.|+++++++.+++.+++..+.
T Consensus 159 l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 159 LYHTTKLKDKADFVIVNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred hhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence 344567899999999999999999999998765
No 21
>PRK00625 shikimate kinase; Provisional
Probab=99.62 E-value=4e-16 Score=121.72 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhcc-CCchHHHHHHHhcccccCCCCccchHHHHhH--------
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKK-GTGGWKKVVAAFGEDILLPNGEVDRSKLGQI-------- 72 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~-~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~-------- 72 (197)
.|.|+|+|||||||+++.|++ +|++++|+|.++++.+.. .....+++++..|++.|+. .+...+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~---~E~~~l~~l~~~~~VIs 78 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCR---EEFLALTSLPVIPSIVA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHH---HHHHHHHHhccCCeEEE
Confidence 489999999999999999998 899999999999876532 1136889999999988873 223333221
Q ss_pred ----hcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC---C-CHHHHHHHHHhCCCcccccCCCcEEEEc
Q 029212 73 ----VFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR---T-SEEDARNRINAQMPLDIKRNNADIVINN 144 (197)
Q Consensus 73 ----vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~---~-s~e~i~~ri~~q~~~~~~~~~aD~vI~N 144 (197)
+..++++++.+..- +..|+ +...++...+|+.+|+- . +.+++.+.++.+.+. |.+.||++|+.
T Consensus 79 ~GGg~~~~~e~~~~l~~~-~~Vv~------L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~--Y~~~ad~~i~~ 149 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNR-GLLVL------LSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDR--MRSIADYIFSL 149 (173)
T ss_pred CCCCccCCHHHHHHHhcC-CEEEE------EECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHH--HHHHCCEEEeC
Confidence 22334444443221 11111 12334556678887742 1 345666666666554 44568988765
Q ss_pred C
Q 029212 145 T 145 (197)
Q Consensus 145 ~ 145 (197)
+
T Consensus 150 ~ 150 (173)
T PRK00625 150 D 150 (173)
T ss_pred C
Confidence 5
No 22
>PRK13947 shikimate kinase; Provisional
Probab=99.62 E-value=6.3e-16 Score=119.52 Aligned_cols=146 Identities=17% Similarity=0.152 Sum_probs=86.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH-------
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI------- 72 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~------- 72 (197)
|+.|+|+|+|||||||+++.|++ +|++++|.|.+.++.. +....++++.+|+..|++ .+...+...
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~---g~~~~~~~~~~ge~~~~~---~e~~~~~~l~~~~~~v 74 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT---GMTVAEIFEKDGEVRFRS---EEKLLVKKLARLKNLV 74 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc---CCcHHHHHHHhChHHHHH---HHHHHHHHHhhcCCeE
Confidence 88899999999999999999998 9999999999888764 345567788888876652 222222211
Q ss_pred ------hcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCCC---CHHHHHHHHHhCCCc-ccccCCCcEEE
Q 029212 73 ------VFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDRT---SEEDARNRINAQMPL-DIKRNNADIVI 142 (197)
Q Consensus 73 ------vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~~---s~e~i~~ri~~q~~~-~~~~~~aD~vI 142 (197)
+..++..++.+.+. +..|+ +........+|+..|.+. ..++...++...... .+.++.||++|
T Consensus 75 i~~g~g~vl~~~~~~~l~~~-~~vv~------L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~I 147 (171)
T PRK13947 75 IATGGGVVLNPENVVQLRKN-GVVIC------LKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTI 147 (171)
T ss_pred EECCCCCcCCHHHHHHHHhC-CEEEE------EECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEE
Confidence 11223333333321 11111 112223345677655321 112222222221111 12345689999
Q ss_pred EcCC-CHHHHHHHHHHHH
Q 029212 143 NNTG-TLDDLNEQVRKVL 159 (197)
Q Consensus 143 ~N~~-~~~~l~~~i~~ii 159 (197)
++++ +++++.++|.+.+
T Consensus 148 dt~~~~~~~i~~~I~~~~ 165 (171)
T PRK13947 148 DTGDMTIDEVAEEIIKAY 165 (171)
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 9765 8888988888843
No 23
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.61 E-value=1.5e-15 Score=137.34 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=100.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------- 73 (197)
..|.|+|+|||||||+++.|++ +|+++||+|..+++.. +..+++|++.+|++.|++ ++++.|.+..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~---g~si~eif~~~Ge~~FR~---~E~~~l~~~~~~~~~VI 80 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI---GMSIPSYFEEYGEPAFRE---VEADVVADMLEDFDGIF 80 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH---CcCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCeEE
Confidence 3689999999999999999998 9999999999888765 567999999999999983 5555554432
Q ss_pred ------cCChHHHHHHhhhh---chhhHHHHHHHHHHHHHhcchHhhhcC------CCCHHHHHHHHHhCCCcccccCCC
Q 029212 74 ------FSDSSKRQLLNGLL---APYISLGIFMEVLKLWIKGCKRLMARD------RTSEEDARNRINAQMPLDIKRNNA 138 (197)
Q Consensus 74 ------f~~~~~~~~l~~i~---~p~i~~~~~~~i~~~~~~~~~Rl~~R~------~~s~e~i~~ri~~q~~~~~~~~~a 138 (197)
..++++++.|.+++ .+.|+ +...++...+|+..+. +.+.+++.+.++.+.|. |.+.|
T Consensus 81 s~GGG~v~~~~n~~~L~~~~~~~g~vv~------L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~--Y~~~A 152 (542)
T PRK14021 81 SLGGGAPMTPSTQHALASYIAHGGRVVY------LDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPV--FRQVA 152 (542)
T ss_pred ECCCchhCCHHHHHHHHHHHhcCCEEEE------EECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHH--HHhhC
Confidence 22444444442211 11222 1223444455664322 12356676666666554 55679
Q ss_pred cEEEEcCC-CHHHHHHHHHHHHHH
Q 029212 139 DIVINNTG-TLDDLNEQVRKVLFE 161 (197)
Q Consensus 139 D~vI~N~~-~~~~l~~~i~~ii~~ 161 (197)
|++|++++ +++++.+++.+.++.
T Consensus 153 d~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 153 NVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHh
Confidence 99999887 888888888777765
No 24
>PRK13946 shikimate kinase; Provisional
Probab=99.58 E-value=6.7e-15 Score=115.73 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=94.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH--------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI-------- 72 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~-------- 72 (197)
+.|+++|++||||||+++.|++ +|++++|+|.+.++.. +....++++.+|+..|++ ++++.+.+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~---g~~~~e~~~~~ge~~~~~---~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA---RMTIAEIFAAYGEPEFRD---LERRVIARLLKGGPLVL 84 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh---CCCHHHHHHHHCHHHHHH---HHHHHHHHHHhcCCeEE
Confidence 4799999999999999999998 8999999999888775 334568888999887752 333333222
Q ss_pred -----hcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCCC------C-HHHHHHHHHhCCCcccccCCCcE
Q 029212 73 -----VFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDRT------S-EEDARNRINAQMPLDIKRNNADI 140 (197)
Q Consensus 73 -----vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~~------s-~e~i~~ri~~q~~~~~~~~~aD~ 140 (197)
.|.+++.++.+..... .|+ +....+...+|+++|.+. + .+.+++....+.+ .+..+|+
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~-~v~------L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~---~y~~~dl 154 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGI-SVW------LKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYP---VYAEADL 154 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCE-EEE------EECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH---HHHhCCE
Confidence 2334444444432100 011 223345566788777542 1 2333333333322 3445899
Q ss_pred EEEcCC-CHHHHHHHHHHHHHHHhc
Q 029212 141 VINNTG-TLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 141 vI~N~~-~~~~l~~~i~~ii~~l~~ 164 (197)
+|++++ +++++.+.+...++.+..
T Consensus 155 ~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 155 TVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred EEECCCCCHHHHHHHHHHHHHHhhc
Confidence 987665 888888888888876654
No 25
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.58 E-value=3.2e-15 Score=126.61 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=101.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHH-H
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK-R 80 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~-~ 80 (197)
.|+|+|++||||||+++.|++ +|+++||+|..+.+.. +....++++.+|++.|+ .++++.+.+.+..++.. .
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~---G~~i~ei~~~~G~~~fr---~~e~~~l~~ll~~~~~~VI 208 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA---GLSVSEIFALYGQEGYR---RLERRALERLIAEHEEMVL 208 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh---CCCHHHHHHHHCHHHHH---HHHHHHHHHHHhhCCCEEE
Confidence 699999999999999999997 8999999998776653 55688899999998887 35666666654432211 0
Q ss_pred HHHhh-hhchhhHHHHHHH-----HHHHHHhcchHhhhcCCC--------CHHHHHHHHHhCCCcccccCCCcEEEEcCC
Q 029212 81 QLLNG-LLAPYISLGIFME-----VLKLWIKGCKRLMARDRT--------SEEDARNRINAQMPLDIKRNNADIVINNTG 146 (197)
Q Consensus 81 ~~l~~-i~~p~i~~~~~~~-----i~~~~~~~~~Rl~~R~~~--------s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~ 146 (197)
....+ +..|..+..+... +....+...+|+++|.+. ..+.+.+.++.+.+. ++.+|++|+|++
T Consensus 209 ~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~---y~~ad~~I~t~~ 285 (309)
T PRK08154 209 ATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPL---YARADAVVDTSG 285 (309)
T ss_pred ECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH---HHhCCEEEECCC
Confidence 01011 1122222211111 112344566788876432 236676666666553 456999999998
Q ss_pred -CHHHHHHHHHHHHHHHh
Q 029212 147 -TLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 147 -~~~~l~~~i~~ii~~l~ 163 (197)
+++++.++|...++.+.
T Consensus 286 ~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 286 LTVAQSLARLRELVRPAL 303 (309)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 89999999988887554
No 26
>PRK13949 shikimate kinase; Provisional
Probab=99.57 E-value=3.9e-15 Score=115.75 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=49.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILL 59 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~ 59 (197)
|+.|+|+|+|||||||+++.|++ +|++++|+|.+.++.+ +....++++.+|++.|+
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~---~~~~~~~~~~~g~~~fr 57 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF---HKTVGDIFAERGEAVFR 57 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH---CccHHHHHHHhCHHHHH
Confidence 88899999999999999999998 9999999999887765 34678889999988776
No 27
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.57 E-value=6.4e-15 Score=114.80 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=90.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------- 73 (197)
+.|+|+|++||||||+++.|++ +|++++|+|..+++.. +....++++.+|+..|++ .+...+.++.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~---g~~i~~~~~~~g~~~fr~---~e~~~l~~l~~~~~~vi 78 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT---GADIGWVFDVEGEEGFRD---REEKVINELTEKQGIVL 78 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh---CcCHhHHHHHhCHHHHHH---HHHHHHHHHHhCCCEEE
Confidence 4699999999999999999997 8999999998877665 335678888889888873 2333333321
Q ss_pred ------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC-------CCHHHHHHHHHhCCCcccccCCCcE
Q 029212 74 ------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR-------TSEEDARNRINAQMPLDIKRNNADI 140 (197)
Q Consensus 74 ------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~-------~s~e~i~~ri~~q~~~~~~~~~aD~ 140 (197)
..++++++.|... +..|+ +...++...+|+..++. ...+.+...+..+.|. |.+.||+
T Consensus 79 ~~ggg~v~~~~~~~~l~~~-~~vv~------L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~--Y~~~Ad~ 149 (172)
T PRK05057 79 ATGGGSVKSRETRNRLSAR-GVVVY------LETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPL--YEEIADV 149 (172)
T ss_pred EcCCchhCCHHHHHHHHhC-CEEEE------EeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHhhCCE
Confidence 1233333333321 11221 22334555667654321 1223444444555443 4556999
Q ss_pred EEEcCC-CHHHHHHHHHHHHH
Q 029212 141 VINNTG-TLDDLNEQVRKVLF 160 (197)
Q Consensus 141 vI~N~~-~~~~l~~~i~~ii~ 160 (197)
+|++++ +.+++.+++.+.+.
T Consensus 150 ~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 150 TIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999887 78888777766553
No 28
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.56 E-value=1.3e-13 Score=111.29 Aligned_cols=157 Identities=13% Similarity=0.222 Sum_probs=102.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh----c-----cCCchHHHHHHHhcccccCCCCc----cch
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL----K-----KGTGGWKKVVAAFGEDILLPNGE----VDR 66 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~----~-----~~~~~~~~i~~~~G~~~~~~~~~----~dr 66 (197)
+++|+|+|++||||||+++.|++ +|++++++|.+.+.+. . .+...+.++...+|..+...++. +|+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 17899999999999999999997 9999999998877652 1 12234555667777655443433 788
Q ss_pred HHHHhHhcCChHHHHHHhhhhchhhHHHHHHHHHHH------------------------------HHhcchHhhhcC--
Q 029212 67 SKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKL------------------------------WIKGCKRLMARD-- 114 (197)
Q Consensus 67 ~~l~~~vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~------------------------------~~~~~~Rl~~R~-- 114 (197)
+.+...+++++..........||.|+..+...+... ++.+.+|...|.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~ 161 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTVVFPNAEVKIFLDASVEERAKRRYKQLQI 161 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceEEeCCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 889988988887776666667999998775443321 112233554443
Q ss_pred ---CCCHHHHHHHHHhCC----Cc--cc-ccCCCcEEEEcCC-CHHHHHHHHHH
Q 029212 115 ---RTSEEDARNRINAQM----PL--DI-KRNNADIVINNTG-TLDDLNEQVRK 157 (197)
Q Consensus 115 ---~~s~e~i~~ri~~q~----~~--~~-~~~~aD~vI~N~~-~~~~l~~~i~~ 157 (197)
..+.+++.+.+..+- .. .+ ..+.-+++|+++. +++++.+.|.+
T Consensus 162 ~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieevv~~I~~ 215 (217)
T TIGR00017 162 KGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEVVEKILE 215 (217)
T ss_pred cCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHHHHHHHH
Confidence 345677776655441 11 11 1122236788887 77777766654
No 29
>PRK04182 cytidylate kinase; Provisional
Probab=99.55 E-value=7.1e-15 Score=114.04 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=88.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~ 81 (197)
+|+|+|++||||||+++.|++ +|++++|+|++.++..+..+....++. .+++..+..+..+++ .+.+........
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 77 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFN-KYAEEDPEIDKEIDR-RQLEIAEKEDNV-- 77 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHH-HHhhcCchHHHHHHH-HHHHHHhcCCCE--
Confidence 699999999999999999997 999999999988887765555555554 234332210000111 111111000000
Q ss_pred HHhhhhchhhHHH---HHHHHHHHHHhcchHhhhcCCCCHHHHHHHHHhCCCc------------ccccCCCcEEEEcCC
Q 029212 82 LLNGLLAPYISLG---IFMEVLKLWIKGCKRLMARDRTSEEDARNRINAQMPL------------DIKRNNADIVINNTG 146 (197)
Q Consensus 82 ~l~~i~~p~i~~~---~~~~i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~------------~~~~~~aD~vI~N~~ 146 (197)
.+.......+... +...+....+...+|+++|++.+.++..+.+..+... ...+..||++|+|+.
T Consensus 78 Vi~g~~~~~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~ 157 (180)
T PRK04182 78 VLEGRLAGWMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSR 157 (180)
T ss_pred EEEEeecceEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCC
Confidence 0000000000000 0000122344567899888777766654433222110 011367999999987
Q ss_pred -CHHHHHHHHHHHHHHHhc
Q 029212 147 -TLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 147 -~~~~l~~~i~~ii~~l~~ 164 (197)
+++++.+.|.+.++....
T Consensus 158 ~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 158 WDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 899999999888876654
No 30
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.53 E-value=1.5e-14 Score=111.99 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=87.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH-----h-
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI-----V- 73 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~-----v- 73 (197)
|+.|.|+|++||||||+++.|++ +|++++|.|.+.+.... ....++.+.+|++.|++ .+.+.+... +
T Consensus 2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g---~~~~~~~~~~g~~~~~~---~e~~~~~~~~~~~~vi 75 (171)
T PRK03731 2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN---MTVAEIVEREGWAGFRA---RESAALEAVTAPSTVI 75 (171)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC---CCHHHHHHHHCHHHHHH---HHHHHHHHhcCCCeEE
Confidence 46799999999999999999998 89999999999988763 34566777888776652 223333111 0
Q ss_pred ------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC---------CC-HHHHHHHHHhCCCcccccCC
Q 029212 74 ------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR---------TS-EEDARNRINAQMPLDIKRNN 137 (197)
Q Consensus 74 ------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~---------~s-~e~i~~ri~~q~~~~~~~~~ 137 (197)
.-++.+++.+... ...++ +........+|+..|.+ .+ .+++.+.+..+.+. +...
T Consensus 76 ~~ggg~vl~~~~~~~l~~~-~~~v~------l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~--y~~~ 146 (171)
T PRK03731 76 ATGGGIILTEENRHFMRNN-GIVIY------LCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREAL--YREV 146 (171)
T ss_pred ECCCCccCCHHHHHHHHhC-CEEEE------EECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHH--HHHh
Confidence 0112222222110 00000 11223344567766521 11 24444444444332 3345
Q ss_pred CcEEEEcCCCHHHHHHHHHHHHH
Q 029212 138 ADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 138 aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
++++|+++.++++..+++...++
T Consensus 147 a~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 147 AHHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred CCEEEcCCCCHHHHHHHHHHHHh
Confidence 78999999899988888877764
No 31
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.9e-14 Score=110.74 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=90.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~ 81 (197)
++|+|||.||+||||+|+.|+++|+.+++.-+++++- + .+.+.-+..++-.++. ...++.+.+.+.....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~----~-~~~~~de~r~s~~vD~--d~~~~~le~~~~~~~~--- 70 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRELGYKVIELNELAKEN----G-LYTEYDELRKSVIVDV--DKLRKRLEELLREGSG--- 70 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhc----C-CeeccCCccceEEeeH--HHHHHHHHHHhccCCe---
Confidence 3599999999999999999999999999987777652 1 1111111111111110 0012222222111110
Q ss_pred HHhhhhchhhHHHHHH------HHHHHHHhcchHhhhcCCCCHHHHHHHHHhCCCc---ccccCC--CcEEEEcCC-CHH
Q 029212 82 LLNGLLAPYISLGIFM------EVLKLWIKGCKRLMARDRTSEEDARNRINAQMPL---DIKRNN--ADIVINNTG-TLD 149 (197)
Q Consensus 82 ~l~~i~~p~i~~~~~~------~i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~---~~~~~~--aD~vI~N~~-~~~ 149 (197)
.++.+ . ..+.. -+.+.+....+||+.| |++++++.+.+.+++-. .+..+. +.+.|++.+ +++
T Consensus 71 Ivd~H----~-~hl~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~e 144 (180)
T COG1936 71 IVDSH----L-SHLLPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSPE 144 (180)
T ss_pred Eeech----h-hhcCCCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHH
Confidence 01111 0 01100 0112344567899998 99999999999988542 223333 446777765 899
Q ss_pred HHHHHHHHHHHH---Hh-cCCCcchhh
Q 029212 150 DLNEQVRKVLFE---IK-RPLNWTEFW 172 (197)
Q Consensus 150 ~l~~~i~~ii~~---l~-~~~~~~~~~ 172 (197)
++.+.|.+++.. .. .-++|....
T Consensus 145 e~~~~i~~ii~~~~~~~~g~vd~~~~~ 171 (180)
T COG1936 145 EVAEEIIDIIGGGRKKRVGVVDWLEEL 171 (180)
T ss_pred HHHHHHHHHHcccccCCCCCcchhhhh
Confidence 999999999883 22 226687763
No 32
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.44 E-value=2e-13 Score=105.21 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=82.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcC-----
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS----- 75 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~----- 75 (197)
+.|.|+|++||||||+++.|++ +|++++|.|.+.++.... ...++++..|+..+.. .+...+.+..-.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~---~~~~~~~~~g~~~~~~---~~~~~~~~l~~~~~~vi 78 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK---SIPEIFEEEGEAAFRE---LEEEVLAELLARHNLVI 78 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC---CHHHHHHHHCHHHHHH---HHHHHHHHHHhcCCCEE
Confidence 5799999999999999999998 999999999998876532 3455566666655441 122222222111
Q ss_pred --------ChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC---C----CHHHHHHHHHhCCCcccccCCCcE
Q 029212 76 --------DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR---T----SEEDARNRINAQMPLDIKRNNADI 140 (197)
Q Consensus 76 --------~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~---~----s~e~i~~ri~~q~~~~~~~~~aD~ 140 (197)
++..++.+..- +..|+ +....+...+|+.+|.+ . ..+.+........+. +...+|+
T Consensus 79 ~~g~~~~~~~~~r~~l~~~-~~~v~------l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~dl 149 (175)
T PRK00131 79 STGGGAVLREENRALLRER-GTVVY------LDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPL--YEEVADI 149 (175)
T ss_pred EeCCCEeecHHHHHHHHhC-CEEEE------EECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH--HHhhcCe
Confidence 11222222110 01111 11223344567765532 1 112333333322221 3345899
Q ss_pred EEEcCC-CHHHHHHHHHHHHHHH
Q 029212 141 VINNTG-TLDDLNEQVRKVLFEI 162 (197)
Q Consensus 141 vI~N~~-~~~~l~~~i~~ii~~l 162 (197)
+|++++ +++++.+.|.+.++.+
T Consensus 150 ~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 150 TVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhh
Confidence 999775 8888888888777643
No 33
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.42 E-value=1.6e-13 Score=105.36 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=84.9
Q ss_pred CcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------------cC
Q 029212 10 ISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV-------------FS 75 (197)
Q Consensus 10 ~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v-------------f~ 75 (197)
|||||||+++.|++ +|++++|+|....+.+ ++...++++..|++.|+. .+...+.+.. ..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~---g~si~~i~~~~G~~~fr~---~E~~~l~~l~~~~~~VIa~GGG~~~ 74 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT---GMSISEIFAEEGEEAFRE---LESEALRELLKENNCVIACGGGIVL 74 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH---TSHHHHHHHHHHHHHHHH---HHHHHHHHHHCSSSEEEEE-TTGGG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh---CCcHHHHHHcCChHHHHH---HHHHHHHHHhccCcEEEeCCCCCcC
Confidence 79999999999998 9999999999988775 468999999999998873 3444443333 23
Q ss_pred ChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC---C-CH---HHHHHHHHhCCCcccccCCCcEEEEcCCCH
Q 029212 76 DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR---T-SE---EDARNRINAQMPLDIKRNNADIVINNTGTL 148 (197)
Q Consensus 76 ~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~---~-s~---e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~ 148 (197)
++++++.|.+. ++.|+ +...++...+|+..+++ . .. +...+.+..+.+. |...+|+++++++..
T Consensus 75 ~~~~~~~L~~~-g~vI~------L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~--Y~~~a~~~v~~~~~~ 145 (158)
T PF01202_consen 75 KEENRELLKEN-GLVIY------LDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPL--YEQAADIVVDTDGSP 145 (158)
T ss_dssp SHHHHHHHHHH-SEEEE------EE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHH--HHHHSSEEEETSSCH
T ss_pred cHHHHHHHHhC-CEEEE------EeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHH--HHhcCeEEEeCCCCC
Confidence 44444444421 22222 12334455667765543 1 11 1233333322232 445689999999865
Q ss_pred -HHHHHHHHHHHH
Q 029212 149 -DDLNEQVRKVLF 160 (197)
Q Consensus 149 -~~l~~~i~~ii~ 160 (197)
++..++|.+.++
T Consensus 146 ~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 146 PEEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhC
Confidence 777777666553
No 34
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.41 E-value=9.9e-14 Score=108.34 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=79.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh--------
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV-------- 73 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v-------- 73 (197)
+|.|+|+|||||||+|+.|++ +|++++++|++.++....+......+.+........++. +-...+.+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSE-VTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHH-HHHHHHHHHHhccCCCcE
Confidence 488999999999999999997 999999997777665543332222222222111111110 1011111111
Q ss_pred -----cCChHHHHHHhhhh----chhhHHHHHHHHHHHHHhcchHhhhcCC------CCHHHHHHHHHhC----CCcccc
Q 029212 74 -----FSDSSKRQLLNGLL----APYISLGIFMEVLKLWIKGCKRLMARDR------TSEEDARNRINAQ----MPLDIK 134 (197)
Q Consensus 74 -----f~~~~~~~~l~~i~----~p~i~~~~~~~i~~~~~~~~~Rl~~R~~------~s~e~i~~ri~~q----~~~~~~ 134 (197)
+.+.+..+.+..++ .|.... .+....+...+|+.+|+. .+.+.+.+|+... .+..++
T Consensus 80 vlDg~p~~~~q~~~~~~~~~~~~~~d~~i----~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMDNKVNFKFVL----FFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEE----EEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222221111 111000 011123345678887742 2567777776532 232333
Q ss_pred cCCCc--EEEEcCCCHHHHHHHHHHHH
Q 029212 135 RNNAD--IVINNTGTLDDLNEQVRKVL 159 (197)
Q Consensus 135 ~~~aD--~vI~N~~~~~~l~~~i~~ii 159 (197)
++..+ ++||++++++++.+++.+++
T Consensus 156 ~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 44344 46899999999999888765
No 35
>PRK06762 hypothetical protein; Provisional
Probab=99.36 E-value=1.5e-12 Score=100.33 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=76.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C--CCCeeehhHHHHHHhccC----CchHHHHHHHhcccccCCCCccchHHHHhHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N--DVPVVDADIIARDVLKKG----TGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~--G~~~id~D~i~~~l~~~~----~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf 74 (197)
++|+++|++||||||+++.|++ + ++.+++.|.+.+.+.... ....+.+.. .-..... +|. ..+.+.+|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~g~---~vild~~~ 77 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQ-LVRYGLG-HCE---FVILEGIL 77 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHH-HHHHHHh-CCC---EEEEchhh
Confidence 5789999999999999999997 6 677899999998765311 111111111 0000000 110 01111222
Q ss_pred CChHHHHHHhhhh---c-hhhHHHHHHHHHHHHHhcchHhhhcCC---CCHHHHHHHHHhCCCcccccCCCcEEEEcCC-
Q 029212 75 SDSSKRQLLNGLL---A-PYISLGIFMEVLKLWIKGCKRLMARDR---TSEEDARNRINAQMPLDIKRNNADIVINNTG- 146 (197)
Q Consensus 75 ~~~~~~~~l~~i~---~-p~i~~~~~~~i~~~~~~~~~Rl~~R~~---~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~- 146 (197)
.....+..+..+. + |...- .+...++...+|..+|+. ++.+.++..+....+. +.++.+|+|++
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~v----~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~ 149 (166)
T PRK06762 78 NSDRYGPMLKELIHLFRGNAYTY----YFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTL----GVIGETIFTDNL 149 (166)
T ss_pred ccHhHHHHHHHHHHhcCCCeEEE----EEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCc----CCCCeEEecCCC
Confidence 2221111111110 0 10000 012334566778888854 5667777666655433 23677776665
Q ss_pred CHHHHHHHHHHHH
Q 029212 147 TLDDLNEQVRKVL 159 (197)
Q Consensus 147 ~~~~l~~~i~~ii 159 (197)
+++++.+++...+
T Consensus 150 ~~~~v~~~i~~~~ 162 (166)
T PRK06762 150 SLKDIFDAILTDI 162 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 7787777766543
No 36
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.33 E-value=2.3e-13 Score=104.75 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=79.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH----hcCCh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI----VFSDS 77 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~----vf~~~ 77 (197)
+|+|+|++||||||+++.|++ +|++++|+|.+.+++.+..+.....+... ..+ ...+++ .+.+. +-..+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~----~~~~~~-~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNY-AEE----NPEIDK-KIDRRIHEIALKEK 75 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHH-Hhc----CcHHHH-HHHHHHHHHHhcCC
Confidence 699999999999999999997 89999999988888765433323222111 110 001111 11110 00000
Q ss_pred HHHHHHhhhhchhhHH---HHHHHHHHHHHhcchHhhhcCCCCHHHHHHHHHhCCCcc------------cccCCCcEEE
Q 029212 78 SKRQLLNGLLAPYISL---GIFMEVLKLWIKGCKRLMARDRTSEEDARNRINAQMPLD------------IKRNNADIVI 142 (197)
Q Consensus 78 ~~~~~l~~i~~p~i~~---~~~~~i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~------------~~~~~aD~vI 142 (197)
. -.++....+.+.. .+...+......+.+|+++|++.+.+++.+++..+.... .-....|.+|
T Consensus 76 ~--~Vi~g~~~~~~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i 153 (171)
T TIGR02173 76 N--VVLESRLAGWIVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVI 153 (171)
T ss_pred C--EEEEecccceeecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEE
Confidence 0 0001100000000 000001223445678999998899888887665442110 0124568999
Q ss_pred EcCC-CHHHHHHHHHHH
Q 029212 143 NNTG-TLDDLNEQVRKV 158 (197)
Q Consensus 143 ~N~~-~~~~l~~~i~~i 158 (197)
+++. ++++ .+.|.+.
T Consensus 154 ~t~~~~~~~-~~~i~~~ 169 (171)
T TIGR02173 154 NTSNWDPNN-VDIILDA 169 (171)
T ss_pred ECCCCCHHH-HHHHHHH
Confidence 9997 7777 6666554
No 37
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.31 E-value=4.9e-12 Score=113.12 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=53.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQ 71 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~ 71 (197)
.|+|+|+|||||||+++.|++ +|++++|+|.++++. .+...+++++.+|++.|+ .++++.+.+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~---~g~~i~~i~~~~Ge~~fr---~~E~~~l~~ 65 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR---EGRSVRRIFEEDGEEYFR---LKEKELLRE 65 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH---cCCCHHHHHHHhhhHHHH---HHHHHHHHH
Confidence 589999999999999999997 999999999998875 356788999999999987 355555544
No 38
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.30 E-value=2.6e-12 Score=97.27 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=45.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILL 59 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~ 59 (197)
.|+|+|++||||||+++.|++ +|++++|+|.+.++.+.. ...++++.+|++.+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~ 55 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM---SIPEIFAEEGEEGFR 55 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC---CHHHHHHHHCHHHHH
Confidence 388999999999999999997 999999999999887643 345777777776655
No 39
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.30 E-value=7.4e-12 Score=100.05 Aligned_cols=57 Identities=26% Similarity=0.337 Sum_probs=44.6
Q ss_pred HhcchHhhhcC----CCCHHHHHHHHHhCCC------cccccCCCcEEEEcCC----CHHHHHHHHHHHHH
Q 029212 104 IKGCKRLMARD----RTSEEDARNRINAQMP------LDIKRNNADIVINNTG----TLDDLNEQVRKVLF 160 (197)
Q Consensus 104 ~~~~~Rl~~R~----~~s~e~i~~ri~~q~~------~~~~~~~aD~vI~N~~----~~~~l~~~i~~ii~ 160 (197)
..+..|+++|+ |.+.+++..++..|.. .+++...||++|+|++ +++++.++|.+++.
T Consensus 137 ~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 137 DIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred hHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 34556887887 7899999999988864 3556788999999776 68888888887764
No 40
>PRK03839 putative kinase; Provisional
Probab=99.29 E-value=1.7e-12 Score=101.30 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=32.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
+|.|+|+|||||||+++.|++ +|++++|+|++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~ 37 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK 37 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence 599999999999999999998 89999999988764
No 41
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.28 E-value=1.9e-11 Score=96.42 Aligned_cols=57 Identities=25% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
.+...+|+++|++.+.+++++|+++|.++.++...+|++|.|+ +++++.+++..++.
T Consensus 127 ~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 127 EEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHh
Confidence 4556779999988899999999999987666778899999999 89999999998875
No 42
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.28 E-value=7.1e-12 Score=97.89 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=35.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK 40 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~ 40 (197)
+.+|+|+|++||||||+++.|++ +|++++++|++.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~ 43 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVA 43 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHh
Confidence 36899999999999999999997 89999999888876543
No 43
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.24 E-value=2e-11 Score=96.00 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCc-EEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD-~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
.+...+|+++|++.+.+++.+|+..+. ++..+| ++|+|+++++++.+++.+++..-++
T Consensus 121 ~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 121 PEILRQRLENRGRENASEINARLARAA----RYQPQDCHTLNNDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhh----hhccCCEEEEeCCCCHHHHHHHHHHHHhhcCc
Confidence 455678999887778888999986652 234577 6888888999999999998875543
No 44
>PRK14531 adenylate kinase; Provisional
Probab=99.23 E-value=4.4e-11 Score=93.86 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGT 43 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~ 43 (197)
+.|.++|+|||||||+|+.|++ +|+++++++++.++....+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~ 45 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGS 45 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCC
Confidence 4699999999999999999997 99999999777765544433
No 45
>PRK02496 adk adenylate kinase; Provisional
Probab=99.22 E-value=8.7e-11 Score=91.99 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=38.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTG 44 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~ 44 (197)
|+.|+|+|+|||||||+++.|++ +|++++++|++.++.+..+.+
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~ 45 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTP 45 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccCh
Confidence 78899999999999999999997 899999999998887654443
No 46
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.3e-12 Score=98.26 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=80.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
+.|.|||.||+||||+|+.+++ .|+++|+..+++++- ..+....+.+-.-+ +|..++.+-+ ++..+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~y~c~i------~DEdkv~D~L--e~~m~ 74 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEEYKCHI------LDEDKVLDEL--EPLMI 74 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhcccccccCcc------ccHHHHHHHH--HHHHh
Confidence 3689999999999999999998 899999998888762 22322222222222 2322222211 12111
Q ss_pred HHHhhhhchhhHHHHHHH-HHH------HHHhcchHhhhcCCCCHHHHHHHHHhCCCc---ccccC--CCcEEEEcC-CC
Q 029212 81 QLLNGLLAPYISLGIFME-VLK------LWIKGCKRLMARDRTSEEDARNRINAQMPL---DIKRN--NADIVINNT-GT 147 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~-i~~------~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~---~~~~~--~aD~vI~N~-~~ 147 (197)
....++..+-...+... +.. .-...++||..| |++.+.+...++..+-. ++.++ .++.|..=. .+
T Consensus 75 -~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL~sR-gY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s~~ 152 (176)
T KOG3347|consen 75 -EGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRLKSR-GYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQSET 152 (176)
T ss_pred -cCCcEEeecccCccchhheeEEEEEecCchHHHHHHHHc-CCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCcCC
Confidence 12333322211111111 111 112457899988 89998888877766321 22222 245665433 35
Q ss_pred HHHHHHHHHHHHH
Q 029212 148 LDDLNEQVRKVLF 160 (197)
Q Consensus 148 ~~~l~~~i~~ii~ 160 (197)
.+++..++.++++
T Consensus 153 ~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 153 KEEMESNISRILN 165 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 6888888777665
No 47
>PLN02200 adenylate kinase family protein
Probab=99.17 E-value=3.4e-10 Score=92.38 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=82.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
.+|+|+|+|||||||+|+.|++ +|+++|+++++.++....+......+.+.....-..++ .+....+.+.+-.....-
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~-e~~~~~l~~~l~~~~~~~ 122 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPS-EVTVKLIQKEMESSDNNK 122 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCCCe
Confidence 4789999999999999999997 89999999777766544333333333333211111111 111111111110000000
Q ss_pred HHHhhhhchhhHHHH--HHHH-----------HHHHHhcchHhhhcC----CCCHHHHHHHHHhCC----CcccccCC-C
Q 029212 81 QLLNGLLAPYISLGI--FMEV-----------LKLWIKGCKRLMARD----RTSEEDARNRINAQM----PLDIKRNN-A 138 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~--~~~i-----------~~~~~~~~~Rl~~R~----~~s~e~i~~ri~~q~----~~~~~~~~-a 138 (197)
-.++. +|.-.... +... ........+|+.+|+ ..+.+.+++|++... +..+++.. .
T Consensus 123 ~ILDG--~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~ 200 (234)
T PLN02200 123 FLIDG--FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKG 200 (234)
T ss_pred EEecC--CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01111 23221110 0000 011233456887773 234566666665332 22223332 2
Q ss_pred c-EEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 139 D-IVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 139 D-~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
. ++||++++++++.+.+.+.+....
T Consensus 201 ~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 201 KLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 2 568888899999999998877654
No 48
>PRK04040 adenylate kinase; Provisional
Probab=99.13 E-value=1.1e-10 Score=92.17 Aligned_cols=43 Identities=30% Similarity=0.291 Sum_probs=37.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-C--CCCeeehhHHHHHHhccCC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-N--DVPVVDADIIARDVLKKGT 43 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~--G~~~id~D~i~~~l~~~~~ 43 (197)
|++|+|+|.|||||||+++.|++ + ++++++.|.+.++.....+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g 47 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEG 47 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcC
Confidence 67899999999999999999987 6 8999999888777655444
No 49
>PRK14528 adenylate kinase; Provisional
Probab=99.13 E-value=1.7e-10 Score=90.87 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=39.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTG 44 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~ 44 (197)
|+.|.|+|+|||||||+++.|++ +|++++++|++.++....+..
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~ 45 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA 45 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH
Confidence 88999999999999999999997 999999999998887665543
No 50
>PRK14532 adenylate kinase; Provisional
Probab=99.13 E-value=1.6e-10 Score=90.75 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTG 44 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~ 44 (197)
.|.++|+|||||||+|+.|++ +|++++++|++.++....+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~ 44 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSE 44 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCH
Confidence 388999999999999999997 999999998888876554443
No 51
>PRK13808 adenylate kinase; Provisional
Probab=99.11 E-value=6.3e-10 Score=94.80 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=84.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcC----
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS---- 75 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~---- 75 (197)
|+ |+|+|+|||||||+|+.|++ +|+++|++|+++++....+.+.-..+.+.+-...+.+|..+ ...+.+.+-.
T Consensus 1 mr-Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv-~~li~e~l~~~~~~ 78 (333)
T PRK13808 1 MR-LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV-VGIISDRIEQPDAA 78 (333)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHH-HHHHHHHHhccccc
Confidence 44 88999999999999999998 99999999888887655444332222222211111111110 0111111100
Q ss_pred -------ChHHH---HHHhhhh-----chhhHHHHHHHHHHHHHhcchHhhhc------------CCCCHHHHHHHHHhC
Q 029212 76 -------DSSKR---QLLNGLL-----APYISLGIFMEVLKLWIKGCKRLMAR------------DRTSEEDARNRINAQ 128 (197)
Q Consensus 76 -------~~~~~---~~l~~i~-----~p~i~~~~~~~i~~~~~~~~~Rl~~R------------~~~s~e~i~~ri~~q 128 (197)
-|... +.|+.++ .|.+.. .+....+...+|+..| ...+.+.+.+|+...
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI----~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y 154 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVV----ELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASY 154 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEE----EEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHH
Confidence 01111 1111110 111000 0011122345566654 124677888888543
Q ss_pred C----CcccccCCCc--EEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 129 M----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 129 ~----~~~~~~~~aD--~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
. |..+++...+ ++||.+.+++++.++|..++..+...
T Consensus 155 ~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 155 RAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA 197 (333)
T ss_pred HHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 2 2233444433 46788889999999999999887764
No 52
>PRK14526 adenylate kinase; Provisional
Probab=99.10 E-value=1.2e-10 Score=93.70 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=41.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
|+ |+|+|+|||||||+++.|++ +|+++++++++.++....+.+....+.+.+
T Consensus 1 m~-i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~ 53 (211)
T PRK14526 1 MK-LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIV 53 (211)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHH
Confidence 54 78999999999999999996 999999999998877665544444444443
No 53
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.09 E-value=1.5e-10 Score=92.77 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=35.3
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCC
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGT 43 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~ 43 (197)
|.|+|+|||||||+|+.|++ +|+++|++|++.++.+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~ 42 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGT 42 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhcccc
Confidence 78999999999999999997 99999999888887665443
No 54
>PRK14530 adenylate kinase; Provisional
Probab=99.07 E-value=4.7e-10 Score=90.15 Aligned_cols=38 Identities=24% Similarity=0.119 Sum_probs=34.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~ 39 (197)
+.|+|+|+|||||||+++.|++ +|++++++|++.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~ 42 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANK 42 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc
Confidence 4799999999999999999997 9999999998888754
No 55
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.07 E-value=1.8e-10 Score=89.57 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=44.5
Q ss_pred hcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 105 KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 105 ~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
...+|+.+|...+.+++++|+.++..+.++.+.||++|.|+ +++++.++++.++.
T Consensus 125 ~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 125 ELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCcEEEECC-CHHHHHHHHHHHHh
Confidence 34568888877788899999988865544566799999997 89999999998874
No 56
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.07 E-value=2.3e-10 Score=91.90 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=38.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVV 50 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~ 50 (197)
+|.|+|+|||||||+|+.|++ +|++++++|++.++....+.....++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~ 50 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAK 50 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHH
Confidence 488999999999999999997 999999998888776655443333343
No 57
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.07 E-value=2.4e-11 Score=94.48 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=29.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-----CCCeeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-----DVPVVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-----G~~~id~D~i~~~ 37 (197)
.+|+++|++||||||+++.|++ + +..+++.|.+.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~ 49 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh
Confidence 4799999999999999999975 4 4678888887654
No 58
>PRK06696 uridine kinase; Validated
Probab=99.05 E-value=6.5e-11 Score=95.74 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=28.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeee--hhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVD--ADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id--~D~i~~ 36 (197)
.+|+|.|++||||||+++.|++ + |.+++. +|.+..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 5899999999999999999996 5 766654 787653
No 59
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.04 E-value=2.8e-09 Score=83.52 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=40.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVA 51 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~ 51 (197)
+|.|.|+|||||||+|+.|++ +|++++|+|++.+.-.....+...++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~ 51 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKK 51 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHH
Confidence 588999999999999999998 9999999999888776655444444443
No 60
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.03 E-value=5.1e-09 Score=93.97 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=34.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|+|.|++||||||+++.|++ +|+.++|.|.+-|.+
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 4799999999999999999997 999999999888774
No 61
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.00 E-value=6.9e-11 Score=93.62 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=29.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CCCeeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~D~i~~~ 37 (197)
+|||+|++||||||+++.|.+ + +..++++|...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 489999999999999999987 4 3678888876644
No 62
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.99 E-value=4.4e-10 Score=86.20 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=29.6
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
|+++|++||||||+++.|++ +|.+++|.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 57999999999999999997 899999999974
No 63
>PRK14527 adenylate kinase; Provisional
Probab=98.99 E-value=4.3e-09 Score=82.98 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=36.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTG 44 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~ 44 (197)
++|.++|+|||||||+++.|++ +|++++++|++.++....+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~ 50 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE 50 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH
Confidence 4799999999999999999997 999999998888876654443
No 64
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.99 E-value=1.3e-09 Score=86.52 Aligned_cols=58 Identities=24% Similarity=0.233 Sum_probs=47.2
Q ss_pred hcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 105 KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 105 ~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
...+|+.+|+..+.+.+++|+..+....++...+|++|.|+ +++++.+++..++....
T Consensus 129 ~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~e~~~~~l~~il~~~~ 186 (205)
T PRK00300 129 ELERRLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVND-DLDTALEELKAIIRAER 186 (205)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhCCEEEECC-CHHHHHHHHHHHHHHHH
Confidence 34569999977899999999988755444566799999887 89999999999998764
No 65
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.99 E-value=6.4e-09 Score=80.91 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=42.0
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEE-EEcCCCHHHHHHHHHHHHH
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIV-INNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~v-I~N~~~~~~l~~~i~~ii~ 160 (197)
.+...+|+..|++.+.+++.+++..+..... ..+|++ |+|+++++++.+++.+++.
T Consensus 121 ~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~--~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 121 PDVLAQRLAARGRESREEIEERLARSARFAA--APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhccc--ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 4456789999877788888888876643321 457776 7888899999999988774
No 66
>PLN02674 adenylate kinase
Probab=98.98 E-value=2.1e-09 Score=88.08 Aligned_cols=49 Identities=22% Similarity=0.093 Sum_probs=39.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVV 50 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~ 50 (197)
+.|.|.|+|||||||+|+.|++ +|+++|+++++.++..+.+...-..+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~ 81 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 81 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHH
Confidence 3588999999999999999997 999999998888877665554444443
No 67
>PRK06217 hypothetical protein; Validated
Probab=98.97 E-value=3.5e-10 Score=88.68 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=34.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
|+.|+|+|++||||||+++.|++ +|++++++|.+.++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 88999999999999999999998 89999999988864
No 68
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.95 E-value=4.5e-10 Score=93.67 Aligned_cols=40 Identities=33% Similarity=0.270 Sum_probs=31.6
Q ss_pred chHhhhcCCCCHHHHHHHHHhCCCccc-----ccCCCcEEEEcCC
Q 029212 107 CKRLMARDRTSEEDARNRINAQMPLDI-----KRNNADIVINNTG 146 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~~~~~-----~~~~aD~vI~N~~ 146 (197)
.+|.++|+|.+.+++.+++++|.+..+ ....||+||++.-
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEEEEccC
Confidence 447777779999999999998877644 3678999997664
No 69
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.95 E-value=1.8e-09 Score=90.59 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=28.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeeh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDA 31 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~ 31 (197)
|.+|+|+|++||||||+++.|++.|+.++|-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~~g~~~~d~ 36 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALEDLGYYCVDN 36 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHcCCeEECC
Confidence 5689999999999999999999999998864
No 70
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.95 E-value=5.9e-10 Score=81.08 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=30.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
+|+|+|+|||||||+|+.|++ +|++++++|.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 589999999999999999998 799999999853
No 71
>PLN02459 probable adenylate kinase
Probab=98.94 E-value=2.3e-09 Score=88.50 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=39.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAA 52 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~ 52 (197)
.|.|+|+|||||||+|+.|++ +|+++|+++++.++....+.+....+.+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~ 81 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEI 81 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHH
Confidence 478899999999999999998 99999999888877655555444444433
No 72
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=5.1e-08 Score=77.83 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=33.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|+|-||.||||||+|+.|++ +||+++|+..+-|-+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 6899999999999999999997 999999998877654
No 73
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.92 E-value=1.1e-09 Score=85.51 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=48.0
Q ss_pred HHHHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 101 KLWIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 101 ~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.+++...+||..|+..+.+.+.+|+.....+-.....+|++|.|+ +++...+++..++..-
T Consensus 123 Ps~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNd-d~e~a~~~l~~ii~ae 183 (191)
T COG0194 123 PSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFDYVIVND-DLEKALEELKSIILAE 183 (191)
T ss_pred CCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECc-cHHHHHHHHHHHHHHH
Confidence 345666779999988899999999987755544556799999999 7888888888877643
No 74
>PRK07429 phosphoribulokinase; Provisional
Probab=98.92 E-value=9.5e-10 Score=93.85 Aligned_cols=39 Identities=33% Similarity=0.273 Sum_probs=31.4
Q ss_pred hHhhhcCCCCHHHHHHHHHhCCCccc-----ccCCCcEEEEcCC
Q 029212 108 KRLMARDRTSEEDARNRINAQMPLDI-----KRNNADIVINNTG 146 (197)
Q Consensus 108 ~Rl~~R~~~s~e~i~~ri~~q~~~~~-----~~~~aD~vI~N~~ 146 (197)
+|.++|+|.+.+++.+++++|.+... ....||+||+|.-
T Consensus 144 ~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 144 KRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 46666678999999999999988644 3678999998874
No 75
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.91 E-value=4.1e-08 Score=79.68 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=33.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|+|+|++||||||+++.|++ +|++++|+|.+.|.+
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 3899999999999999999997 999999999976653
No 76
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.88 E-value=3.5e-08 Score=92.32 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=35.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
|.+|+|+|++||||||+++.|++ +|+.++|++.+.+.+
T Consensus 1 ~~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 1 MIIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 67899999999999999999998 899999998887764
No 77
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.88 E-value=9.4e-09 Score=80.03 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=87.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhcc-CCchHHHHHHHhcccccCCCCccchHHHHhHhc-----
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKK-GTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF----- 74 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~-~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf----- 74 (197)
.+|.|.|+|||||-|.|..+.+ +||.+++++++.|+.... +..-...|.+..-+.-..+. .+-...|.+.+-
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~-ei~~~LL~~am~~~~~~ 87 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPV-EITLSLLEEAMRSSGDS 87 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcH-HHHHHHHHHHHHhcCCC
Confidence 4799999999999999999987 999999998887766555 44333334333322222211 111222222111
Q ss_pred ---------CChHHHHHHhhhhc--hhhHHHHHHHHHHHHHhcchHhhhcC------CCCHHHHHHHHHhC----CCccc
Q 029212 75 ---------SDSSKRQLLNGLLA--PYISLGIFMEVLKLWIKGCKRLMARD------RTSEEDARNRINAQ----MPLDI 133 (197)
Q Consensus 75 ---------~~~~~~~~l~~i~~--p~i~~~~~~~i~~~~~~~~~Rl~~R~------~~s~e~i~~ri~~q----~~~~~ 133 (197)
.+.+....+++.+. |.+.. .+...-+...+|+..|+ ..+.+.+++|++.. .|..+
T Consensus 88 ~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl----~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~ 163 (195)
T KOG3079|consen 88 NGFLIDGYPRNVDQLVEFERKIQGDPDFVL----FFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIE 163 (195)
T ss_pred CeEEecCCCCChHHHHHHHHHhcCCCCEEE----EEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHH
Confidence 11222222332221 11100 01112234556887774 24678888888654 45445
Q ss_pred ccCCCc--EEEEcCCCHHHHHHHHHHHHH
Q 029212 134 KRNNAD--IVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 134 ~~~~aD--~vI~N~~~~~~l~~~i~~ii~ 160 (197)
+++..+ ..|+-+.+.++...++.+.+.
T Consensus 164 ~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 164 YYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred HHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 666544 357777789999998888765
No 78
>PRK07667 uridine kinase; Provisional
Probab=98.87 E-value=5.6e-10 Score=88.42 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=30.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~~~l 38 (197)
.+|||+|++||||||+++.|++ .|.+ +++.|+..++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 4799999999999999999975 3444 89999876544
No 79
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.86 E-value=4.7e-09 Score=85.40 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=39.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKV 49 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i 49 (197)
+.|+|+|+|||||||+|+.|++ +|+++|++|++.++..+.++.....+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i 55 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEI 55 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHH
Confidence 4699999999999999999998 89999999999988665544333333
No 80
>PRK08118 topology modulation protein; Reviewed
Probab=98.84 E-value=2.4e-09 Score=82.98 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=34.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
|+.|.|+|++||||||+|+.|++ +|+++++.|.+..+
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 88999999999999999999997 99999999988753
No 81
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.84 E-value=2.6e-09 Score=89.68 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=35.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-CCCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D~i~~~l~~ 40 (197)
++|.++|+|||||||+|+.|++ + ++.++|.|.+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~ 43 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFG 43 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcC
Confidence 7889999999999999999997 7 8999999999887654
No 82
>PRK08233 hypothetical protein; Provisional
Probab=98.83 E-value=5.9e-09 Score=80.89 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=26.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-CCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-VPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-~~~id~D~i 34 (197)
++|+|+|++||||||+++.|++ ++ ..++..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 5799999999999999999997 65 444444433
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.80 E-value=8.2e-09 Score=80.31 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCe--eehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPV--VDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~--id~D~i~~~l 38 (197)
++|.++|++||||||+++.|++ .+.++ ++.|.+...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~ 42 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL 42 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc
Confidence 4799999999999999999997 55554 4678877654
No 84
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.80 E-value=7.6e-09 Score=81.15 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=40.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
+|+|+|+|||||||+|+.|++ +|++++++|++.++.+.........+.+.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 52 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYI 52 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHH
Confidence 389999999999999999998 899999999998887665444444444444
No 85
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.73 E-value=2.7e-07 Score=85.72 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=34.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|.|.|++||||||+++.|++ +|++++|+|.+-+.+
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 4799999999999999999998 999999999988876
No 86
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.72 E-value=2.4e-08 Score=81.08 Aligned_cols=44 Identities=30% Similarity=0.185 Sum_probs=34.7
Q ss_pred HhcchHhhhc---CCCCHHHHHHHHHh-CCCc----ccccCCCcEEEEcCCC
Q 029212 104 IKGCKRLMAR---DRTSEEDARNRINA-QMPL----DIKRNNADIVINNTGT 147 (197)
Q Consensus 104 ~~~~~Rl~~R---~~~s~e~i~~ri~~-q~~~----~~~~~~aD~vI~N~~~ 147 (197)
....+|+.+| +|.+.+++.+++.. |++. .++...||+||+|+++
T Consensus 172 ~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 172 EVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTAT 223 (229)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecCC
Confidence 3456788888 58999999999975 5663 3577889999999985
No 87
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.70 E-value=5.5e-08 Score=80.93 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=29.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVD 30 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id 30 (197)
|.+|.|||++||||||+.+.|+++||..+|
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED~Gy~cvD 30 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALEDLGYYCVD 30 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHhcCeeEEc
Confidence 899999999999999999999999999986
No 88
>PLN02348 phosphoribulokinase
Probab=98.69 E-value=9.5e-09 Score=89.10 Aligned_cols=39 Identities=33% Similarity=0.370 Sum_probs=29.6
Q ss_pred chHhhhcCCCCHHHHHHHHHhCCCc-----ccccCCCcEEEEcC
Q 029212 107 CKRLMARDRTSEEDARNRINAQMPL-----DIKRNNADIVINNT 145 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~~~-----~~~~~~aD~vI~N~ 145 (197)
..|.++++|.+.+++.++++++.+. .+....||+||+--
T Consensus 201 I~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 201 IQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 3455555689999999999998876 45567899998533
No 89
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.69 E-value=2.4e-08 Score=78.35 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHH
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~ 161 (197)
.+...+|+.+|...+.+++.+|+............+|++|.|+ ++++..+++.+++..
T Consensus 125 ~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~fd~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 125 SEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHHh
Confidence 3345678888877788999998886422222335699999999 789899998888764
No 90
>PLN02842 nucleotide kinase
Probab=98.68 E-value=4e-08 Score=87.82 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=38.8
Q ss_pred EEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 6 LTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 6 ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
|+|++||||||+|+.|++ +|+++++++++.++....+.+....+.+..
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l 50 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFM 50 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHH
Confidence 789999999999999997 999999998888776555555555555544
No 91
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.66 E-value=2.1e-08 Score=78.90 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=23.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~i 29 (197)
++|+|.|.+||||||+++.|++ + |+.++
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6899999999999999999986 4 55554
No 92
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.65 E-value=3.5e-08 Score=73.55 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=34.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK 40 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~ 40 (197)
+|.++|+|||||||+++.|++ +|+.+++.|.+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence 588999999999999999996 99999999999988764
No 93
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.64 E-value=3e-08 Score=81.39 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=27.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CC--CeeehhHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DV--PVVDADIIARDV 38 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~--~~id~D~i~~~l 38 (197)
+|.++|.|||||||+++.|++ + |+ .+++.|.+.+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~ 42 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF 42 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh
Confidence 488999999999999999985 3 44 456667665543
No 94
>PRK13973 thymidylate kinase; Provisional
Probab=98.60 E-value=6e-08 Score=77.92 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeeeh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDA 31 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~ 31 (197)
+.|++-|..||||||.++.|++ + |++++.+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 6899999999999999999986 5 8888765
No 95
>PTZ00301 uridine kinase; Provisional
Probab=98.60 E-value=1.9e-07 Score=75.04 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=25.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C----C---CCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N----D---VPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~----G---~~~id~D~i~ 35 (197)
.+|||+|++||||||+|+.|.+ + | ..++..|.+-
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 5899999999999999987753 2 3 2355667654
No 96
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.59 E-value=2.3e-07 Score=74.05 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC---CCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND---VPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G---~~~id~D~i 34 (197)
.+|+|+|++||||||+++.|.. ++ ..+++.|..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 4799999999999999999986 43 557777765
No 97
>PRK06547 hypothetical protein; Provisional
Probab=98.59 E-value=4.1e-08 Score=76.54 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=33.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
|++|+|+|++||||||+++.|++ +|++++++|.+.+.
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~ 52 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG 52 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence 46899999999999999999997 89999999987653
No 98
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.58 E-value=1.1e-07 Score=75.16 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
++|+|.|++||||||+++.|++
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 99
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.57 E-value=8.5e-08 Score=72.71 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=36.8
Q ss_pred EEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHH
Q 029212 6 LTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVA 51 (197)
Q Consensus 6 ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~ 51 (197)
|.|+|||||||+|+.|++ +|+++|+++++.++....+......+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~ 47 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQE 47 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHH
Confidence 689999999999999997 9999999988888766555444444433
No 100
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.57 E-value=1.1e-07 Score=86.84 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCC------CeeehhHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDV------PVVDADIIARDV 38 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~------~~id~D~i~~~l 38 (197)
+|+++|+|||||||+++.|++ ++. .++|.|.+.+.+
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l 436 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL 436 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc
Confidence 689999999999999999997 775 899999886654
No 101
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.57 E-value=1.4e-07 Score=75.50 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=39.4
Q ss_pred hcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEE-EcCCCHHHHHHHHHHHHHHH
Q 029212 105 KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVI-NNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 105 ~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI-~N~~~~~~l~~~i~~ii~~l 162 (197)
...+|+.+|...+.+++.+|+.............|+++ +++++++++.+++.+++...
T Consensus 137 ~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 137 ELTRRLELRRTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 34679988866677888888875422111122357765 55568999999999988765
No 102
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.56 E-value=8e-08 Score=77.47 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCe-eeh-hHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPV-VDA-DIIARDV 38 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~-id~-D~i~~~l 38 (197)
+|+|||++||||||+++++++.|.++ +++ |.+.+-+
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEIL 39 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHH
Confidence 79999999999999999999999999 996 5555444
No 103
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.55 E-value=2.6e-08 Score=77.26 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~~l~ 39 (197)
.+|+++|.+||||||+++.|+. + | +.++|.|.+.+.+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~ 48 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence 4799999999999999999985 3 3 56789998876543
No 104
>PRK13975 thymidylate kinase; Provisional
Probab=98.54 E-value=1.7e-07 Score=73.70 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDV 26 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~ 26 (197)
++|++.|++||||||+++.|++ ++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999997 773
No 105
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.53 E-value=4.7e-08 Score=73.80 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=32.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
+|.++|.|||||||+++.|++ +|++++|.|.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 478999999999999999998 89999999998864
No 106
>PRK07261 topology modulation protein; Provisional
Probab=98.53 E-value=5.4e-08 Score=75.65 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~ 36 (197)
.|+|+|++||||||+++.|++ +|+++++.|.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 589999999999999999997 8999999998753
No 107
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.52 E-value=6.1e-08 Score=72.43 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=30.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
+|+|+|.+||||||+++.|++ +|++++++|.+..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e 36 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTE 36 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHH
Confidence 489999999999999999997 99999999955433
No 108
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.52 E-value=3.5e-08 Score=78.35 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=31.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-----CCCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-----DVPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-----G~~~id~D~i~~~l~ 39 (197)
.+|+++|.+||||||+++.|+. + |..++|.|.+.+.+.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~ 68 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC 68 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence 4799999999999999999986 3 356788888876543
No 109
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1.1e-06 Score=66.42 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=25.9
Q ss_pred cCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 8 GGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 8 G~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
|-.|||||||+..|++ +|+++|+.|++-
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlH 30 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLH 30 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccC
Confidence 8899999999999997 999999999753
No 110
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.51 E-value=1.7e-07 Score=73.24 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=24.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeeeh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDA 31 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~ 31 (197)
++|+|.|++||||||+++.|++ + |+.++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4699999999999999999985 4 7766543
No 111
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.50 E-value=1.3e-06 Score=68.33 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=29.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
+++++|++||||||+++.++. ++..+++.|.+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 689999999999999999997 88889999875
No 112
>PRK14529 adenylate kinase; Provisional
Probab=98.46 E-value=2.4e-07 Score=75.12 Aligned_cols=43 Identities=30% Similarity=0.408 Sum_probs=35.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTG 44 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~ 44 (197)
|+ |.|.|+|||||||+++.|++ +|++++++.++.++....+.+
T Consensus 1 m~-I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~ 44 (223)
T PRK14529 1 MN-ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTE 44 (223)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCCh
Confidence 54 88999999999999999997 999999988887776544333
No 113
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=4.2e-09 Score=80.33 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=73.1
Q ss_pred EEEEEcCCcCcHHHHHHHHH-h--CCCCeeehhHHHHHHhccCCchHHHHH------HHhcccccCCCCccchHHHHhHh
Q 029212 3 IVGLTGGISSGKSTVSNLFK-A--NDVPVVDADIIARDVLKKGTGGWKKVV------AAFGEDILLPNGEVDRSKLGQIV 73 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~-~--~G~~~id~D~i~~~l~~~~~~~~~~i~------~~~G~~~~~~~~~~dr~~l~~~v 73 (197)
.-.+.|++||||||+....- + -++.++|+|.++.++-..++ ....|. ..+.. ..+ ..+....|.+
T Consensus 4 l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p-~~~~i~A~r~ai~~i~~-~I~----~~~~F~~ETt 77 (187)
T COG4185 4 LDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNP-TSAAIQAARVAIDRIAR-LID----LGRPFIAETT 77 (187)
T ss_pred EEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCc-hHHHHHHHHHHHHHHHH-HHH----cCCCcceEEe
Confidence 34678999999999987553 3 47889999999988754333 222221 11100 000 1233445556
Q ss_pred cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcC-----CCCHHHHHHHHHhCCCc-ccccCCCc--EEEEcC
Q 029212 74 FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARD-----RTSEEDARNRINAQMPL-DIKRNNAD--IVINNT 145 (197)
Q Consensus 74 f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~-----~~s~e~i~~ri~~q~~~-~~~~~~aD--~vI~N~ 145 (197)
++-+..++.++..-.-..+..+........+...+|++.|- +..++.+++|+...+.+ ..++..|| .+.||+
T Consensus 78 LS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS 157 (187)
T COG4185 78 LSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNS 157 (187)
T ss_pred eccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCC
Confidence 66665555443210000000000000011223455776662 36778888888775443 34677888 456888
Q ss_pred C
Q 029212 146 G 146 (197)
Q Consensus 146 ~ 146 (197)
+
T Consensus 158 ~ 158 (187)
T COG4185 158 R 158 (187)
T ss_pred C
Confidence 6
No 114
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=1.6e-07 Score=71.48 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=31.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
+|.+.|..||||||+++.|++ +|++|||+|++-
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H 47 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH 47 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCC
Confidence 689999999999999999997 999999999864
No 115
>PLN02772 guanylate kinase
Probab=98.37 E-value=9e-07 Score=76.92 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=43.7
Q ss_pred HhcchHhhhcCCCCHHHHHHHHHhCC---CcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 104 IKGCKRLMARDRTSEEDARNRINAQM---PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e~i~~ri~~q~---~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
+...+|+..|+..+.+++++|+.... ....+...+|++|.|+ ++++..+++.+++..-.
T Consensus 259 EeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 259 EELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYND-NLEECYKNLKKLLGLDG 320 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECC-CHHHHHHHHHHHHhhcC
Confidence 44456999997678899999987652 2111234689999999 89999999999886444
No 116
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.35 E-value=3.4e-07 Score=70.64 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.8
Q ss_pred EcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 7 TGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 7 tG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
+|++||||||+++.|++ +|..+++.|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999997 89999999875
No 117
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.33 E-value=4.8e-07 Score=70.84 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=36.4
Q ss_pred chHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHH
Q 029212 107 CKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~ 161 (197)
.+|+.+|+..+.+++.+|+..-.........+|++|.|+ +++++.+++.+++++
T Consensus 129 ~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~vi~n~-~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 129 KRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYVIVND-DLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEEEECS-SHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEEEECc-CHHHHHHHHHHHHHh
Confidence 446666644556667766654322222233399999998 899999999999875
No 118
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.31 E-value=5.9e-06 Score=63.43 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=43.6
Q ss_pred HHHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCc-EEEEcCCCHHHHHHHHHHHHH
Q 029212 102 LWIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 102 ~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD-~vI~N~~~~~~l~~~i~~ii~ 160 (197)
..+....||.+|+.-|.|++.+|+..+.... ....| +.|||+|.+++.-++...++.
T Consensus 124 ~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~--~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 124 SPEVLAQRLAERGRESREEILARLARAARYT--AGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CHHHHHHHHHHhccCCHHHHHHHHHhhcccc--cCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 3455678999998899999999998886542 23456 579999998877777766655
No 119
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.29 E-value=1.1e-06 Score=69.96 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~ 40 (197)
++|.++|.|||||||+++.|++ +|+.++...++.++.+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r 43 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLR 43 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHH
Confidence 5799999999999999999997 89987665444444443
No 120
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.21 E-value=8.3e-07 Score=70.09 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=30.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C-CCCeeehhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D~i~~ 36 (197)
+|+|+|++||||||+|+.|++ + ++.+|+.|.+-+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 589999999999999999997 5 799999997764
No 121
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.19 E-value=8.2e-07 Score=68.07 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=26.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhc
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLK 40 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~ 40 (197)
+|+|+|++||||||+++.|++.|++++ ++.++++..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g~~~v--~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARGYPVV--PEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT-EEE----TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCeEE--eecHHHHHH
Confidence 489999999999999999998899988 666666654
No 122
>COG0645 Predicted kinase [General function prediction only]
Probab=98.17 E-value=7.1e-07 Score=68.80 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~ 40 (197)
.++.+.|.+||||||+++.|++ +|+..|.+|.+.+.+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g 41 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG 41 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC
Confidence 4678999999999999999998 99999999999998865
No 123
>PRK12338 hypothetical protein; Provisional
Probab=98.16 E-value=2.7e-06 Score=72.26 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=31.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~ 40 (197)
.+|+|+|++||||||+|+.|++ +|+.++..++..++.+.
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~ 44 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR 44 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence 4799999999999999999997 89998854445555543
No 124
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.2e-06 Score=66.61 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=32.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~~~l~~ 40 (197)
.+|.+||.+||||||+|+.|++ +|+. ++|.|.+++.+..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~ 68 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR 68 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence 3789999999999999999974 4765 6678999988753
No 125
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.11 E-value=2.5e-06 Score=68.08 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=31.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeee----hhHHHHHHhc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVD----ADIIARDVLK 40 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id----~D~i~~~l~~ 40 (197)
++.|+|.|++|+||||+++.|++ +|.+++. =|.+....|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~ 48 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYE 48 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHH
Confidence 36899999999999999999998 8877543 2566665554
No 126
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=2.8e-06 Score=68.31 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=30.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC---eeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP---VVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~---~id~D~i~~~ 37 (197)
.+|||+|++||||||+++.|.+ +|.. +|+.|..-+.
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 4799999999999999999997 7744 7777877653
No 127
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.07 E-value=2.8e-06 Score=61.69 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEcCCcCcHHHHHHHHHhC
Q 029212 4 VGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~~ 24 (197)
|+|+|.+||||||+++.|++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 128
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.05 E-value=3.4e-06 Score=64.65 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=29.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~~~l 38 (197)
.+|.+||.+||||||+|+.|++ .|.+ ++|.|.+.+.+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 4799999999999999999974 3655 77788887765
No 129
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.04 E-value=3.4e-06 Score=55.71 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
+|+++|++||||||+++.|++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999973
No 130
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.03 E-value=3.1e-06 Score=66.84 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|||+|++||||||+|+.|++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999985
No 131
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.03 E-value=4e-06 Score=61.09 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.8
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
|.|+|++|+||||+++.+++ +|++++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 67999999999999999998 89887554
No 132
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.02 E-value=2.6e-06 Score=78.81 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=32.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-----CCCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-----DVPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-----G~~~id~D~i~~~l~ 39 (197)
.+|.++|.+||||||+++.|++ + ++.++|.|.+.+.+.
T Consensus 461 ~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~ 504 (632)
T PRK05506 461 ATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN 504 (632)
T ss_pred EEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC
Confidence 5799999999999999999985 3 457899999887654
No 133
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=4.1e-06 Score=66.82 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=26.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCCeeeh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPVVDA 31 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~~id~ 31 (197)
|++|.+||.|||||||+++.|++ .++.+++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 88999999999999999999984 36777664
No 134
>PRK15453 phosphoribulokinase; Provisional
Probab=97.98 E-value=4.3e-06 Score=69.83 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=28.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~ 36 (197)
.+|+|||++||||||+++.|++ + + ..+++.|..-+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5899999999999999999975 4 2 55788887654
No 135
>PLN02165 adenylate isopentenyltransferase
Probab=97.98 E-value=6.2e-06 Score=70.41 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=30.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
+|+|+|++||||||++..|++ ++..++|+|.+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 699999999999999999998 79999999987
No 136
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.97 E-value=6.3e-06 Score=67.61 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=28.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVD 30 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id 30 (197)
|.+|.|||++|||||+..+.|+.+||.++|
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lEDlGyycvD 30 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLEDLGYYCVD 30 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHHHhcCeeeec
Confidence 789999999999999999999999998886
No 137
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.97 E-value=1.1e-05 Score=68.05 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC-eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP-VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~-~id~D~i~~~l 38 (197)
.+|.++|++||||||++..|++ +|++ ++++|.+.+-+
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 4789999999999999999997 8987 78899887544
No 138
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=8.6e-06 Score=61.75 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=27.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVD 30 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id 30 (197)
|++..|||+||+||||+.+.|++.|+.++.
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~Gfatve 38 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARAGFATVE 38 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCceeec
Confidence 568899999999999999999999998775
No 139
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.93 E-value=6.1e-06 Score=64.58 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C-----CCCeeehhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N-----DVPVVDADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~-----G~~~id~D~i~~ 36 (197)
+|+|+|.+||||||+++.|++ + ...+|+.|...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 589999999999999999986 3 346888998876
No 140
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.93 E-value=1.2e-05 Score=76.46 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=34.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|+|.|++||||||+++.|++ +|+.++|+|.+.|.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 4799999999999999999998 999999999998875
No 141
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.90 E-value=9.2e-06 Score=61.67 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=29.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CC--CeeehhHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DV--PVVDADIIARDVL 39 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~--~~id~D~i~~~l~ 39 (197)
+|.++|.+||||||+++.|+. + |+ .+++.|.+.+.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~ 43 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN 43 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh
Confidence 478999999999999999986 4 64 4567788877553
No 142
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.88 E-value=1.3e-05 Score=67.99 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
++|+|+|+.||||||++..|++ ++..+|++|..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 5799999999999999999997 89999999973
No 143
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.88 E-value=7.1e-06 Score=66.35 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=25.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CC-------CCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G-------~~~id~D~i 34 (197)
+|||+|++||||||+++.|+. +. ..++++|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 589999999999999999985 41 346677765
No 144
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.85 E-value=3e-05 Score=60.68 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=28.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhcc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKK 41 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~ 41 (197)
+|.|.+..|||++|+++.|++ +|++++|- ++..+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~ 39 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKE 39 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT--
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHH
Confidence 689999999999999999998 99999998 566665544
No 145
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.85 E-value=2.7e-05 Score=60.82 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=31.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~~l~ 39 (197)
.+|+++|.+||||||+++.|.. + | ..+++.|.+.+.+.
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~ 62 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN 62 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc
Confidence 5799999999999999999985 2 4 45788898877653
No 146
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.85 E-value=1.2e-05 Score=63.81 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~D~i~~~l 38 (197)
..|.+.|.|||||||++..+.+ + ++.+||+|.+...+
T Consensus 16 ~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4688999999999999999875 5 68899999987543
No 147
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.83 E-value=0.00012 Score=57.11 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCC---Ceee-hhHHHHHHhccCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDV---PVVD-ADIIARDVLKKGT 43 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~---~~id-~D~i~~~l~~~~~ 43 (197)
+|+++|..+|||.|++++|.+ ++. .++. +|.+.++.+..-+
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~g 46 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHG 46 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhC
Confidence 589999999999999999976 774 2566 5777777665433
No 148
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=2.5e-05 Score=60.30 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=32.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-C-CCCeeehhHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIARDVL 39 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D~i~~~l~ 39 (197)
|+++++||-||+|||||++.+.+ + ++++++-.++.-+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A 44 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA 44 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH
Confidence 57899999999999999999987 6 888899765554443
No 149
>PRK05439 pantothenate kinase; Provisional
Probab=97.82 E-value=1.2e-05 Score=68.34 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=27.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-------CCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-------~~~id~D~i~ 35 (197)
.+|||+|++||||||+|+.|++ ++ ..++++|..-
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 4799999999999999999986 32 3467777664
No 150
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.82 E-value=1.3e-05 Score=68.74 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=26.8
Q ss_pred EEEEcCCcCcHHHHHHHHHh-C----CC--CeeehhHHHH
Q 029212 4 VGLTGGISSGKSTVSNLFKA-N----DV--PVVDADIIAR 36 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~----G~--~~id~D~i~~ 36 (197)
++++|.+||||||+++.|++ + |+ .+++.|+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 68999999999999888874 3 33 3888998873
No 151
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.81 E-value=8.4e-06 Score=67.64 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=28.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~ 36 (197)
+|+|+|++||||||+++.|++ + | ..+|+.|.+-+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999998874 3 4 45888887765
No 152
>PHA00729 NTP-binding motif containing protein
Probab=97.79 E-value=2.5e-05 Score=63.32 Aligned_cols=24 Identities=21% Similarity=0.015 Sum_probs=21.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND 25 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G 25 (197)
..|+|+|+||+||||+|..+++ .+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999986 44
No 153
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.77 E-value=1.6e-05 Score=66.89 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=25.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-------CCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-------~~~id~D~i~ 35 (197)
.+|||+|++||||||+++.|.. +. ..++++|..-
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4799999999999999998864 21 3456677543
No 154
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.75 E-value=2.9e-05 Score=60.41 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCC--Ceeeh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDV--PVVDA 31 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~--~~id~ 31 (197)
|++|.|+|++||||||+|..|+. .|. .++++
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 56799999999999999999986 564 35544
No 155
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=2.6e-05 Score=59.87 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=22.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCCe
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPV 28 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~~ 28 (197)
++.|+|||+||+||||++..+++ .||.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 46799999999999999998873 45554
No 156
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.73 E-value=3.2e-05 Score=70.03 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=31.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
.+|.++|.|||||||+++.+.. .|+.+++.|.+.
T Consensus 370 ~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg 404 (526)
T TIGR01663 370 EMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG 404 (526)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH
Confidence 4789999999999999999986 899999999874
No 157
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.70 E-value=2.7e-05 Score=61.17 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
+|++.|.+||||||+++.|++ +|+.++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 489999999999999999998 7876553
No 158
>PLN02840 tRNA dimethylallyltransferase
Probab=97.70 E-value=3.8e-05 Score=67.55 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=29.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
++|+|+|++||||||++..|++ ++.++|++|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 4799999999999999999998 8999999986
No 159
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.69 E-value=3.2e-05 Score=64.98 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=28.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
+|+|+|++|||||+++..|++ ++..+|++|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 489999999999999999997 8999999987
No 160
>PRK09169 hypothetical protein; Validated
Probab=97.69 E-value=4.4e-05 Score=77.28 Aligned_cols=52 Identities=6% Similarity=-0.076 Sum_probs=45.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILL 59 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~ 59 (197)
.|.|+|+||+||||+++.|+. +|++++|.|..+.+-. +..+.+|+...| +|+
T Consensus 2112 aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~---GrkI~rIFa~eG--~FR 2164 (2316)
T PRK09169 2112 ARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI---GKKIARIQALRG--LSP 2164 (2316)
T ss_pred ccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh---CCCHHHHHHhcC--chH
Confidence 588999999999999999997 9999999998887654 457899999988 666
No 161
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.66 E-value=2.6e-05 Score=62.54 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=28.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
|+++.|.|+.|+|||..+-.|++ .|.|+|++|.+-
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 89999999999999999999998 999999999753
No 162
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.60 E-value=3.9e-05 Score=63.96 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIA 35 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~ 35 (197)
|.+|.|+|.|||||||+++.|++ .+.. +++.|.+.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 88999999999999999999975 3554 45544444
No 163
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.57 E-value=0.00012 Score=65.18 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC-eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP-VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~-~id~D~i~~~l 38 (197)
.+|.+.|.+||||||++..|++ +|+. ++++|.+.+.+
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 4789999999999999999998 8997 77899877644
No 164
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.53 E-value=8e-05 Score=65.40 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
+++|+|+|++||||||+++.|++ .|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 46899999999999999999998 6887654
No 165
>PLN02748 tRNA dimethylallyltransferase
Probab=97.53 E-value=6.9e-05 Score=66.88 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
.+|+|+|+.||||||++..|++ ++..+|++|.
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 3799999999999999999998 8999999995
No 166
>PRK06761 hypothetical protein; Provisional
Probab=97.52 E-value=7.7e-05 Score=62.51 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
++|.|+|++||||||+++.|++ +....++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 4799999999999999999996 65444443
No 167
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.51 E-value=8.7e-05 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=22.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|++|.++|+.||||||+++.|..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcC
Confidence 89999999999999999999985
No 168
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.51 E-value=0.0001 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
+|+|.|.+||||||+++.+++ +|..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 689999999999999999997 7864
No 169
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.45 E-value=0.00013 Score=52.53 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=25.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~ 35 (197)
..++|.|++||||||+++.+. .|-..++.|++.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~-~G~i~~~g~di~ 48 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI-KRKHRLVGDDNV 48 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh-CCeEEEeeEeHH
Confidence 368999999999999999988 444455555544
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00014 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..+.|+|++||||||+++.++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999999985
No 171
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.41 E-value=0.00011 Score=54.54 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.0
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
|.|+|++|+|||++++.+++ ++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 68999999999999999997 777654
No 172
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00072 Score=54.30 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCCee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPVV 29 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~~i 29 (197)
++.|++-|.=||||||+++.|++ .|+.++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~ 35 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVV 35 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 36899999999999999999974 476554
No 173
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.38 E-value=0.00014 Score=56.55 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
.|+|||++||||||+.++++.+
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5899999999999999999864
No 174
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.38 E-value=0.00014 Score=63.99 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=29.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
..|.++|++||||||+++.|++ ++.++++.|..
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 4688999999999999999998 89999998843
No 175
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.36 E-value=0.00015 Score=58.44 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
+|+|-|..||||||+++.|++ ++..++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 489999999999999999997 776544
No 176
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.35 E-value=0.0002 Score=61.28 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=26.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
++.|+|+|++||||||+++.|++ +|.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 35799999999999999999998 698875
No 177
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.34 E-value=0.00019 Score=54.57 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=26.5
Q ss_pred EEEEcCCcCcHHHHHHHHHhCCCCeeehhH
Q 029212 4 VGLTGGISSGKSTVSNLFKANDVPVVDADI 33 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~~G~~~id~D~ 33 (197)
|.++|++||||||++-.|.+.|+.++.=|.
T Consensus 17 vLi~G~sG~GKStlal~L~~~g~~lvaDD~ 46 (149)
T cd01918 17 VLITGPSGIGKSELALELIKRGHRLVADDR 46 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCeEEECCE
Confidence 789999999999999999999998885553
No 178
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.34 E-value=0.00029 Score=55.02 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=28.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC--eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP--VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~--~id~D~i~~~l 38 (197)
++|.|.|++.|||||+++.|.+ +.-+ .+..|.+...+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~ 41 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM 41 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence 5799999999999999999997 6555 55679888753
No 179
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.33 E-value=0.00018 Score=65.73 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=28.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-CCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D~i 34 (197)
.+|||+|++||||||+++.|+. + +..+|.+|..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 4799999999999999999997 4 4567888765
No 180
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.32 E-value=0.00019 Score=59.23 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCC--CeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~--~~id~D~ 33 (197)
.+|||||+||+||||+...|.. .|. -++..|.
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 4799999999999999988852 343 3555554
No 181
>COG4639 Predicted kinase [General function prediction only]
Probab=97.32 E-value=0.00032 Score=53.57 Aligned_cols=36 Identities=28% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l 38 (197)
.++++.|.+||||||+++..- ...+++++|++...+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~-~~~~~lsld~~r~~l 38 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF-LQNYVLSLDDLRLLL 38 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC-CCcceecHHHHHHHh
Confidence 478999999999999998643 468899999998876
No 182
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.32 E-value=0.00018 Score=63.40 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
..|.++|++||||||+++.|++ ++.+++..|.
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4689999999999999999998 8999888875
No 183
>PLN02796 D-glycerate 3-kinase
Probab=97.31 E-value=0.00018 Score=61.86 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|||+|++||||||+++.|..
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999985
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.30 E-value=0.0002 Score=61.85 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND 25 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G 25 (197)
++++|+|+|||||||+++.|++ ++
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999986 53
No 185
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.29 E-value=0.00029 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
.+|.+.|..||||||+++.+++ +|..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4799999999999999999997 8764
No 186
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00027 Score=51.39 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~ 31 (197)
.+.|+|++|+||||+++.+.+ . +.+++..
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 578999999999999999986 4 6665544
No 187
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.27 E-value=0.00021 Score=52.64 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEEccCCCccccceeeecc
Confidence 689999999999999999984
No 188
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.26 E-value=0.00029 Score=45.61 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+..|+|++||||||+...+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988763
No 189
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00031 Score=59.43 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=31.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
|++|+|+|+.|||||-++-.|++ +|.++||+|.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 46899999999999999999998 99999999964
No 190
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.25 E-value=0.00021 Score=55.51 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|.|||.||+||||+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 488999999999999997754
No 191
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.25 E-value=0.00021 Score=53.41 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+++.|.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 192
>PRK13695 putative NTPase; Provisional
Probab=97.24 E-value=0.00025 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCCe
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVPV 28 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~~ 28 (197)
.|+|||.+||||||+++.+.+ .|+++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 589999999999999999753 37664
No 193
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.24 E-value=0.00031 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|++|+++|.+||||||+++.|..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999998864
No 194
>PF13173 AAA_14: AAA domain
Probab=97.23 E-value=0.0003 Score=51.78 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=28.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC----CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND----VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G----~~~id~D~i~~ 36 (197)
++++|+|+.|+||||+++.+++ +. +.++++|+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4689999999999999998885 43 67888876554
No 195
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.22 E-value=0.0012 Score=53.54 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=33.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHHHHHhcc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDVLKK 41 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~~~l~~~ 41 (197)
.+|+++|.||.|||++|+.|.+ +|+. ++++++++|+....
T Consensus 13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~ 58 (222)
T PF01591_consen 13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGA 58 (222)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccc
Confidence 3689999999999999999984 4654 99999999988754
No 196
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.22 E-value=0.00027 Score=55.40 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 197
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.19 E-value=0.00029 Score=56.28 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.19 E-value=0.00043 Score=56.15 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
.+.+.|+||+||||+|+.+++ +|..+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeE
Confidence 478999999999999999997 887654
No 199
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.18 E-value=0.00022 Score=54.98 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=29.8
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CC-CCeeehhHHHHH
Q 029212 4 VGLTGGISSGKSTVSNLFKA-ND-VPVVDADIIARD 37 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G-~~~id~D~i~~~ 37 (197)
|+=++.+||||||++..|.+ +| |-++-.|.+..+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k 37 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK 37 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC
Confidence 45578999999999999999 89 999999988654
No 200
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.18 E-value=0.00031 Score=56.96 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+.+.+.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999984
No 201
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.18 E-value=0.00034 Score=54.61 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~ 22 (197)
|.+|+|+|++||||||+.+.+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHH
Confidence 4689999999999999988776
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00032 Score=55.81 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 203
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00041 Score=55.84 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-----CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-----NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-----~G~~~id~ 31 (197)
+++|+|++||||||+.+.+.. -|-..++-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 689999999999999999873 25556655
No 204
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.17 E-value=0.00032 Score=55.78 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 205
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.17 E-value=0.00033 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 206
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.17 E-value=0.00033 Score=55.84 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 207
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00032 Score=56.79 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 208
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.16 E-value=0.00033 Score=55.99 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 209
>PF05729 NACHT: NACHT domain
Probab=97.16 E-value=0.00033 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++.|+|.+|+||||+++.+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred CEEEEECCCCCChHHHHHHHH
Confidence 368999999999999999886
No 210
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.15 E-value=0.00041 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 211
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00035 Score=57.18 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|++||||||+.++++-
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 212
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00035 Score=55.66 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 213
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.14 E-value=0.00034 Score=55.99 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 214
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.13 E-value=0.00052 Score=52.90 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVP--VVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i 34 (197)
+++++|++||||||++..++. .|.. ++++|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 688999999999999887763 4654 5788853
No 215
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.13 E-value=0.00037 Score=55.12 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 216
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.13 E-value=0.00037 Score=54.49 Aligned_cols=20 Identities=45% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||+.+.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999885
No 217
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00038 Score=55.80 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 218
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.12 E-value=0.00038 Score=55.18 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 219
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00038 Score=55.78 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 220
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.12 E-value=0.00049 Score=58.22 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~ 40 (197)
++|+|+|+.|||||.++-.|++.+..+||+|- .++|+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS--~QvYr 41 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGKAEIINVDS--IQVYK 41 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCcEEeccH--HHHHC
Confidence 47999999999999999999985559999996 45554
No 221
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00035 Score=59.40 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
++|.+.||||+|||++|+.|++ +.+...
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 5789999999999999999997 665543
No 222
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.12 E-value=0.00036 Score=55.63 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 223
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.11 E-value=0.00039 Score=55.61 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 224
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.11 E-value=0.0004 Score=55.62 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 225
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.11 E-value=0.0004 Score=54.35 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 689999999999999999984
No 226
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.11 E-value=0.00039 Score=55.85 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 227
>PRK09087 hypothetical protein; Validated
Probab=97.11 E-value=0.00054 Score=55.61 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=29.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~ 37 (197)
.+.|.|++|||||++++.+++ .+..+++.+.+..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~ 81 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD 81 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence 478999999999999999986 78889998754443
No 228
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.10 E-value=0.00053 Score=57.91 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=25.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVP--VVDAD 32 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D 32 (197)
+.+|+|+|++||||||++..|.. .|.. +++.|
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999998753 3554 56666
No 229
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.10 E-value=0.00041 Score=55.20 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|||++||||||+.+.++
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 68999999999999999886
No 230
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.10 E-value=0.00037 Score=56.35 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 231
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0004 Score=56.29 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00044 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 233
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00044 Score=53.71 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 234
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.09 E-value=0.00049 Score=62.39 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
++..||||+||||||..+.|++ +|+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3678999999999999999997 9988765
No 235
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.09 E-value=0.00042 Score=55.55 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 236
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.09 E-value=0.00043 Score=55.06 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 237
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00043 Score=56.05 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 238
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00038 Score=55.36 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999984
No 239
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.09 E-value=0.00044 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 240
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.00045 Score=54.43 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 241
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.08 E-value=0.00045 Score=55.00 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999985
No 242
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.08 E-value=0.00044 Score=57.21 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C----CCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N----DVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~----G~~~id~ 31 (197)
+++|.|++||||||+.+.++. + |-..+|-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g 63 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 689999999999999999985 2 5555654
No 243
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.08 E-value=0.00044 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 244
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.08 E-value=0.00052 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
.|.|+|++|+|||++++.|++ +|.+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999999999997 888866
No 245
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00045 Score=55.83 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 246
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.00073 Score=58.70 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=30.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~~l~ 39 (197)
+.++|-|+||||||.+++.+++ +|+++|. +.++..+.+
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4689999999999999999996 8988665 555555444
No 247
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.07 E-value=0.00047 Score=53.06 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 248
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.07 E-value=0.00046 Score=55.52 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 249
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.07 E-value=0.00045 Score=56.13 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 250
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.07 E-value=0.00045 Score=55.70 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 251
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.00047 Score=56.30 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|||+|.+||||||+.+.++.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999999984
No 252
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00046 Score=56.05 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 253
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00047 Score=56.28 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+||+|.+||||||+++.|+-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 579999999999999999983
No 254
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.06 E-value=0.00046 Score=56.00 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00049 Score=54.15 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 256
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.05 E-value=0.00047 Score=55.60 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 257
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.05 E-value=0.00064 Score=53.87 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
++++|||++||||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 369999999999999999987
No 258
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0004 Score=58.33 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
.+|||||.||+||||+...|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred cEEEecCCCCCchHHHHHHHH
Confidence 379999999999999988875
No 259
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.0005 Score=56.31 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 260
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.04 E-value=0.00051 Score=55.40 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 261
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00051 Score=56.60 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 262
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.03 E-value=0.00053 Score=55.60 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 263
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.02 E-value=0.00056 Score=53.11 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 264
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00053 Score=56.37 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 32 ~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 265
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.02 E-value=0.00056 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 266
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.02 E-value=0.00054 Score=56.26 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G 47 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 267
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00055 Score=55.78 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 268
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.01 E-value=0.00058 Score=53.87 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 269
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.01 E-value=0.00058 Score=58.34 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=25.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|.|+|++||||||+++.+++ +|++++.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 588999999999999999997 8988763
No 270
>CHL00181 cbbX CbbX; Provisional
Probab=97.01 E-value=0.001 Score=55.99 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=27.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCC------CeeehhHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDV------PVVDADIIARDVL 39 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~------~~id~D~i~~~l~ 39 (197)
.|.++|+||+||||+|+.+++ .|+ ..++.+++..+..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~ 107 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI 107 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence 478999999999999999964 233 3455666665544
No 271
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00056 Score=54.57 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 272
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00057 Score=54.35 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 273
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00056 Score=56.35 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 274
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00057 Score=55.19 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 275
>PRK10646 ADP-binding protein; Provisional
Probab=97.00 E-value=0.00078 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
+|.+.|..||||||+++.+++ +|..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 689999999999999999998 8873
No 276
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00057 Score=55.84 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 277
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00058 Score=55.53 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 278
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.99 E-value=0.00064 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|.|.+||||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 279
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.99 E-value=0.00057 Score=55.24 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~G 34 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILG 34 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 280
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.99 E-value=0.00081 Score=54.77 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=23.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCCe
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVPV 28 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~~ 28 (197)
|++|+++|..||||||++..|. +.|+.+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V 32 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRV 32 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeE
Confidence 8999999999999999988665 347654
No 281
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.99 E-value=0.00059 Score=55.22 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 282
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.99 E-value=0.00058 Score=55.90 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAG 51 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 283
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.99 E-value=0.00061 Score=54.09 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.99 E-value=0.0006 Score=51.31 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999985
No 285
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.99 E-value=0.0006 Score=60.19 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=27.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
.|.++|++|||||++++.|++ ++.+++..|.
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 488999999999999999997 8888876654
No 286
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.98 E-value=0.0006 Score=55.65 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 287
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.98 E-value=0.00061 Score=54.71 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.98 E-value=0.00062 Score=54.17 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.98 E-value=0.00065 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 290
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.98 E-value=0.00062 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 291
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.00052 Score=52.38 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDVL 39 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i~~~l~ 39 (197)
+|.+||.+||||||++-.|++ .|.. .+|.|.+++.+-
T Consensus 33 viWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 33 VIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred EEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 689999999999999988874 4643 667788888764
No 292
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.98 E-value=0.00065 Score=59.88 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|||+|+.||||||+++.|..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 293
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00062 Score=55.65 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999985
No 294
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.97 E-value=0.00067 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 295
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00063 Score=54.77 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.97 E-value=0.00068 Score=58.17 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=24.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
.+|+|+|++||||||++..|. +.|.. +++.|.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999764 34543 555554
No 297
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.97 E-value=0.00063 Score=54.78 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 298
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.96 E-value=0.00064 Score=54.76 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G 28 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILG 28 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 299
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00064 Score=55.67 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 300
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00065 Score=55.21 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 301
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00059 Score=54.16 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 689999999999999999985
No 302
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00064 Score=54.97 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 303
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00065 Score=55.57 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 304
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.96 E-value=0.00064 Score=55.65 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.95 E-value=0.00078 Score=52.33 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
++.|+|++|||||++|..++. .|-+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367999999999999999985 5544
No 306
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.95 E-value=0.00071 Score=56.55 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~ 22 (197)
|++|+++|..||||||++..|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li 22 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLV 22 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999886
No 307
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.95 E-value=0.00067 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 308
>PRK10908 cell division protein FtsE; Provisional
Probab=96.95 E-value=0.00069 Score=54.36 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 309
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.95 E-value=0.00067 Score=54.97 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 310
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00069 Score=55.75 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 311
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.94 E-value=0.00069 Score=54.19 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 312
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.94 E-value=0.0007 Score=54.43 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 313
>PRK13768 GTPase; Provisional
Probab=96.94 E-value=0.00098 Score=54.98 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADII 34 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~i 34 (197)
|++|+++|+.||||||++..++ ..|.+ ++|.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 5789999999999999887775 34655 7777753
No 314
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.94 E-value=0.00074 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.370 Sum_probs=18.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|.|+|++||||||+.+.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999997653
No 315
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00069 Score=56.05 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 316
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.94 E-value=0.00071 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 317
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.94 E-value=0.0007 Score=54.97 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 318
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00076 Score=52.04 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 319
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.93 E-value=0.00068 Score=56.22 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 320
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.93 E-value=0.0014 Score=57.41 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=26.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~ 36 (197)
-|.|.|+||||||++++.+++ .+.+++. +..+..
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 378999999999999999996 7777655 444443
No 321
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.93 E-value=0.0007 Score=55.67 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 322
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00071 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 323
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.93 E-value=0.00095 Score=55.72 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=26.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADII 34 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~i 34 (197)
+.+|+++|++|+||||++..|+. .|.. ++++|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35799999999999998888763 4654 6888863
No 324
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.93 E-value=0.001 Score=48.39 Aligned_cols=30 Identities=33% Similarity=0.570 Sum_probs=24.7
Q ss_pred EEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 4 VGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
|+++|.+|+||||++..++. .|.+ ++|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 78999999999999987763 4765 488886
No 325
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.92 E-value=0.00074 Score=53.55 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 326
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.92 E-value=0.00084 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|++||||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999997764
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=96.92 E-value=0.0013 Score=56.57 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=25.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~i~ 35 (197)
.+|+++|++|+||||.+..|+ +.|.. ++++|..+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 479999999999999665554 45655 46677543
No 328
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00073 Score=55.21 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999994
No 329
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.92 E-value=0.00074 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 330
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00075 Score=55.11 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 331
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00074 Score=55.80 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 332
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.92 E-value=0.00073 Score=54.51 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 333
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.92 E-value=0.00077 Score=53.38 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 334
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.91 E-value=0.0008 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 335
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00068 Score=56.03 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 336
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.00073 Score=57.97 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+++.|++||||||+.+++|-
T Consensus 31 f~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999983
No 337
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.91 E-value=0.00076 Score=54.80 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 338
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.00076 Score=55.14 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999974
No 339
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.00074 Score=56.08 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 340
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00073 Score=55.31 Aligned_cols=21 Identities=43% Similarity=0.544 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 341
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00071 Score=56.12 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 342
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.91 E-value=0.00055 Score=56.05 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEcCCcCcHHHHHHHHHh----CC--CCeeehhHHHHH
Q 029212 6 LTGGISSGKSTVSNLFKA----ND--VPVVDADIIARD 37 (197)
Q Consensus 6 ltG~~GSGKSTv~~~L~~----~G--~~~id~D~i~~~ 37 (197)
|+|++||||||+++.+.+ .| ..+++.|.-.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~ 38 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN 38 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc
Confidence 689999999999999975 23 347778876654
No 343
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.90 E-value=0.00075 Score=53.53 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|||++||||||+.+.++
T Consensus 31 ~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EEEEECCCCCccHHHHHHHH
Confidence 68999999999999999998
No 344
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.90 E-value=0.00071 Score=55.31 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999985
No 345
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.90 E-value=0.0008 Score=53.85 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 346
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.00079 Score=54.78 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 347
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00077 Score=55.84 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 348
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.90 E-value=0.00087 Score=51.67 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=23.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCCe
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVPV 28 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~~ 28 (197)
|++++++|+.+|||||+...+. +.|+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rV 33 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRV 33 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEE
Confidence 6899999999999999999874 357754
No 349
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.00079 Score=54.43 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 350
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.90 E-value=0.00079 Score=55.39 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 351
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00091 Score=53.21 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=30.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh--CCCCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~--~G~~~id~D~i~~ 36 (197)
.+|||.|...|||||+|+.|.. -|+.+|+=|+.-+
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 3789999999999999999998 4888999887653
No 352
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00078 Score=55.05 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 353
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00077 Score=56.47 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 354
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00077 Score=56.14 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 355
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.89 E-value=0.00083 Score=53.59 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 356
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00075 Score=54.70 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 357
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00083 Score=54.86 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=96.88 E-value=0.0011 Score=44.69 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=15.6
Q ss_pred EEEEEcCCcCcHH-HHHHHHHh
Q 029212 3 IVGLTGGISSGKS-TVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKS-Tv~~~L~~ 23 (197)
+..|.|+|||||| |+.+.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999 55555554
No 359
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.88 E-value=0.00087 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 360
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.00078 Score=60.73 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
+..|||++||||||..+.|++ +|+.++.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 678999999999999999997 9998765
No 361
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.00084 Score=55.23 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 362
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.00084 Score=54.99 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 363
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.87 E-value=0.0021 Score=53.97 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=25.5
Q ss_pred EEEEEcCCcCcHHHHHHHHH----hCCC------CeeehhHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFK----ANDV------PVVDADIIARDVL 39 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~----~~G~------~~id~D~i~~~l~ 39 (197)
.|.++|+||+||||+|+.++ +.|+ ..++++++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~ 106 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYI 106 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhc
Confidence 47899999999999996665 3343 2455666655443
No 364
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.86 E-value=0.00089 Score=53.57 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G 49 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILG 49 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 365
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00088 Score=55.48 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 366
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00087 Score=54.76 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 367
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.86 E-value=0.00061 Score=58.76 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
.+++.|++||||||+.+++|
T Consensus 33 f~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999998
No 368
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00086 Score=55.63 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 369
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00088 Score=54.91 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 370
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.86 E-value=0.0008 Score=55.57 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.++|+||+||||+++.+++
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 371
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.86 E-value=0.00088 Score=54.41 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 372
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00091 Score=54.72 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 373
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.85 E-value=0.0009 Score=55.27 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~G 48 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 374
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.85 E-value=0.00088 Score=56.57 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 375
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00091 Score=54.71 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 376
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.85 E-value=0.00089 Score=55.34 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 377
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.00088 Score=55.25 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+--
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998763
No 378
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.84 E-value=0.0009 Score=56.47 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.++++.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 379
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0009 Score=55.52 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~G 57 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTG 57 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 380
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.00092 Score=55.46 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~G 72 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINR 72 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 381
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.84 E-value=0.0022 Score=57.85 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-+.+.|+||||||++++.++. .+.+++..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 378999999999999999997 88887764
No 382
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.84 E-value=0.001 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|++||||||+.+.|..
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 383
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.84 E-value=0.00092 Score=54.86 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 384
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.00094 Score=55.46 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.++.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 385
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.84 E-value=0.00091 Score=60.27 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=26.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
-|.+.|+||||||++++.++. .|.+++..|
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 378999999999999999997 899987754
No 386
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.84 E-value=0.00098 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 387
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.00096 Score=55.25 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 388
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.83 E-value=0.00093 Score=55.05 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 389
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.83 E-value=0.0012 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVP 27 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~ 27 (197)
.|.|.|..||||||+.+.|......
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 4899999999999999999864333
No 390
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.83 E-value=0.00098 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 391
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.83 E-value=0.0011 Score=52.73 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+++|++||||||+.+.+.+
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 392
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.82 E-value=0.00094 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++++|-+||||||++++++-
T Consensus 41 TlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhc
Confidence 589999999999999999984
No 393
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.82 E-value=0.001 Score=55.53 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=29.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCe---eehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPV---VDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~---id~D~i~~~ 37 (197)
++|++-|.+|||||++|+.|++ +|+.+ +++|.+--.
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred eEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 5899999999999999999997 88654 457766533
No 394
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0015 Score=53.18 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=38.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVA 51 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~ 51 (197)
...+.|.|||||+|.+..+.+ +++..+.+.++.++....+.+...+..+
T Consensus 17 ~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~ 66 (235)
T KOG3078|consen 17 RAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKE 66 (235)
T ss_pred EEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHH
Confidence 568999999999999999997 8999999877776655455554444433
No 395
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.81 E-value=0.0012 Score=58.14 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=26.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
.|.++|++|||||++++.|++ ++.++.-.|
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 588999999999999999997 888876554
No 396
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0011 Score=50.27 Aligned_cols=21 Identities=43% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 397
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.80 E-value=0.00094 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
+++|+|++||||||+.+.++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999853
No 398
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.001 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|||||++++.+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 399
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.80 E-value=0.001 Score=54.62 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G 53 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 400
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.001 Score=55.59 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G 55 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLING 55 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 401
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.80 E-value=0.0011 Score=52.57 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=26.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----h-CCCCeeehhHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----A-NDVPVVDADIIA 35 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~-~G~~~id~D~i~ 35 (197)
|..|++.|++|||||++...+- + +...+|--|.+.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 5789999999999999987753 2 455566666555
No 402
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.80 E-value=0.0011 Score=52.57 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G 48 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 403
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0028 Score=51.32 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=38.8
Q ss_pred cchHhhhcCCCCHHHHHHHHH-hCCCccccc--CCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 106 GCKRLMARDRTSEEDARNRIN-AQMPLDIKR--NNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 106 ~~~Rl~~R~~~s~e~i~~ri~-~q~~~~~~~--~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
..+|+.+|.--+.+++.+|+. .+.+..... -.+|++|.|+.++++.++.+..++.
T Consensus 163 ~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~~lee~~kel~~~~~ 220 (231)
T KOG0707|consen 163 LEERLRARGTETEESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKELEIFIS 220 (231)
T ss_pred HHHHhhccCcchHHHHHHHHHhhhhhhccccCCccccceecCCCchhhhhhhhhhhhh
Confidence 456999994467788888888 443332222 2589999997688889888887654
No 404
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0011 Score=54.27 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G 52 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINR 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 405
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.80 E-value=0.0011 Score=52.38 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 406
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0014 Score=59.89 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=35.4
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHHHHhccCCchHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
|.+=|+||||||.+|+.++. +|.|+++ +-.++..+. |+.-+.|++.|
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS---GESEkkiRelF 275 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS---GESEKKIRELF 275 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC---cccHHHHHHHH
Confidence 67889999999999999996 9999887 566666553 33444555555
No 407
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.001 Score=56.35 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999984
No 408
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=54.88 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 409
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.79 E-value=0.001 Score=55.18 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 52 ~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999984
No 410
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.79 E-value=0.001 Score=55.38 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 411
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0011 Score=55.31 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 412
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNR 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 413
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.79 E-value=0.0011 Score=54.96 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 414
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0011 Score=55.24 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 415
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.78 E-value=0.00093 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
++.|+|++||||||++..++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH
Confidence 368999999999999998863
No 416
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.78 E-value=0.0026 Score=55.97 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|.|+||||||++++.++. .+.+++..
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 478999999999999999997 78877663
No 417
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.78 E-value=0.001 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 24 i~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 418
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0011 Score=55.18 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 419
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0011 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.++.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 420
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.77 E-value=0.0011 Score=54.62 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G 52 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 421
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0013 Score=53.52 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
+-+|.||+||||||++..+.- -+|.+.+.+
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~ 62 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceEecce
Confidence 468999999999999999985 567665543
No 422
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.76 E-value=0.0012 Score=54.25 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+++.+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 423
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.76 E-value=0.0023 Score=55.42 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=24.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|.|++|||||++++.+++ .+.+++..
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 478999999999999999997 78776653
No 424
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.76 E-value=0.0022 Score=53.55 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=37.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CC--CCeeehhHHHHHHhccCC------chHHHHHHHhc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIARDVLKKGT------GGWKKVVAAFG 54 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G--~~~id~D~i~~~l~~~~~------~~~~~i~~~~G 54 (197)
.|.++|+.||||||+.+.|-. .+ ..+|+.|..++++--+.+ --|++..+.|+
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~ 84 (366)
T KOG1532|consen 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQ 84 (366)
T ss_pred EEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhC
Confidence 688999999999999999852 12 348999998887632222 24666666665
No 425
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0011 Score=57.03 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 33 i~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 426
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.75 E-value=0.0012 Score=53.58 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G 48 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAG 48 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 427
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0012 Score=55.32 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 428
>PRK04195 replication factor C large subunit; Provisional
Probab=96.75 E-value=0.0014 Score=58.98 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.+.|+|++|+||||+++.|++ +|+.++..
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 578999999999999999997 89887764
No 429
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.74 E-value=0.0013 Score=52.80 Aligned_cols=21 Identities=48% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 430
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.74 E-value=0.00044 Score=64.57 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=29.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeee-----hhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVD-----ADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id-----~D~i~~~l~ 39 (197)
..|.++|.||+||||+++.|++ +++..++ .|.+.+++.
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~ 259 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE 259 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhc
Confidence 3689999999999999999998 6555554 455555553
No 431
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0012 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+-+++|++||||||+.+.|..
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 568999999999999999986
No 432
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0012 Score=54.95 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 433
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0013 Score=54.33 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~G 55 (261)
T PRK14258 35 VTAIIGPSGCGKSTFLKCLNR 55 (261)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 434
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0013 Score=54.07 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 435
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0013 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 436
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0013 Score=54.32 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.++.
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 437
>PLN02924 thymidylate kinase
Probab=96.72 E-value=0.0015 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=23.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~i 29 (197)
++|++.|..||||||+++.|++ + |+.++
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 5799999999999999999985 3 66553
No 438
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0013 Score=54.60 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 53 ~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 439
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.72 E-value=0.0013 Score=54.59 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 40 ~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 40 TVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 440
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.71 E-value=0.0012 Score=52.92 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||+.+.+.
T Consensus 30 ~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 30 LFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHhe
Confidence 68999999999999999987
No 441
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.71 E-value=0.0014 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++.|+|+.||||||+.+.|.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll 21 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLL 21 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 368899999999999999887
No 442
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0012 Score=54.49 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G 55 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSR 55 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 443
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0013 Score=55.10 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999984
No 444
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.70 E-value=0.0013 Score=52.14 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 445
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0014 Score=55.01 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 446
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.69 E-value=0.00088 Score=54.57 Aligned_cols=31 Identities=35% Similarity=0.250 Sum_probs=22.9
Q ss_pred EEEEcCCcCcHHHHHHHH----HhCCC--CeeehhHH
Q 029212 4 VGLTGGISSGKSTVSNLF----KANDV--PVVDADII 34 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L----~~~G~--~~id~D~i 34 (197)
-.|+|+|||||||.+.-. +..|- .+++.|.-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 468999999999998644 44565 57777653
No 447
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0013 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCe
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPV 28 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~ 28 (197)
..+|+|++||||||+.+++...-+|.
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcccCCC
Confidence 36899999999999999998654554
No 448
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.69 E-value=0.0013 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCCe
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVPV 28 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~~ 28 (197)
+|+++|++||||||++..|.+ .|+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V 30 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRV 30 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 478999999999999888863 47654
No 449
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0014 Score=53.49 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 450
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.69 E-value=0.0013 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+.+.+.-
T Consensus 25 ~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999973
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.69 E-value=0.0016 Score=48.91 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~~i 29 (197)
++|.|+|+.+|||||+++.|. +.|+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 479999999999999999885 3587644
No 452
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.68 E-value=0.0014 Score=53.89 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999984
No 453
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.68 E-value=0.0015 Score=61.41 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
.|+|+|.+||||||+++.|..+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 454
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0014 Score=54.84 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 67 ~~~I~G~nGsGKSTLl~~l~G 87 (285)
T PRK14254 67 VTAMIGPSGCGKSTFLRCINR 87 (285)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 455
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0015 Score=54.59 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 456
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0023 Score=52.71 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=29.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC-eeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP-VVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~-~id~D~i~~ 36 (197)
.+|.|-|.+|.||||+|..++. +|+. +|++|-+++
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred eEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 3677888899999999999997 9997 777886654
No 457
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.67 E-value=0.0014 Score=44.46 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=24.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~~id~D 32 (197)
+|+++|..|+||||++..++. .|+++.-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 378999999999999998874 388877766
No 458
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0015 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g 48 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 459
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0015 Score=54.38 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 460
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0015 Score=54.43 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999984
No 461
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0015 Score=54.73 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 462
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.65 E-value=0.0015 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG 58 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNR 58 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 463
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.65 E-value=0.0016 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999974
No 464
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.65 E-value=0.0015 Score=54.70 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 65 ~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 465
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.65 E-value=0.0016 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++++|++||||||+.+.+.+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~ 22 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILT 22 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHh
Confidence 678999999999999998764
No 466
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0015 Score=54.45 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 467
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0015 Score=55.80 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+++.+..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 689999999999999999985
No 468
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0016 Score=56.34 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 469
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0016 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G 55 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNG 55 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 470
>PHA02244 ATPase-like protein
Probab=96.63 E-value=0.0017 Score=56.45 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
-|.|+|++|||||++++.++. +|.+++..+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 378999999999999999997 899988654
No 471
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0035 Score=58.81 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=36.3
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh--hHHHHHHhccCCchHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA--DIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~--D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
+.|+|+||+|||-+|+..|- -|.||+++ -+.++-....+.....+++..-
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~a 399 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLA 399 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHh
Confidence 67999999999999999995 99999985 5555554444434445554443
No 472
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0016 Score=53.28 Aligned_cols=21 Identities=43% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|.+||||||+.+.|+-
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999984
No 473
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0016 Score=54.62 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G 55 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNG 55 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 474
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.0016 Score=55.69 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+++.+..
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 475
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.62 E-value=0.0017 Score=55.07 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 35 i~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 476
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.62 E-value=0.0017 Score=54.85 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 477
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.0016 Score=56.57 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999999984
No 478
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=96.61 E-value=0.0019 Score=50.12 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=26.7
Q ss_pred EEEEcCCcCcHHHHHHHHHhCCCCeeehhHHH
Q 029212 4 VGLTGGISSGKSTVSNLFKANDVPVVDADIIA 35 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~ 35 (197)
|.|+|.+|+||||++-.|-+.|..++.=|.+.
T Consensus 21 VLi~G~SG~GKS~lAl~Li~rGh~lvaDD~v~ 52 (171)
T PF07475_consen 21 VLITGPSGIGKSELALELIKRGHRLVADDRVE 52 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-EEEESSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeCCEEE
Confidence 78999999999999999999999888655443
No 479
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.60 E-value=0.0018 Score=53.31 Aligned_cols=21 Identities=43% Similarity=0.544 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 480
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.59 E-value=0.0016 Score=54.79 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-----CCCCeeehh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-----NDVPVVDAD 32 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-----~G~~~id~D 32 (197)
..|+|+|.|||||||+.+.+.+ .+..+|.-|
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 3689999999999999976653 245566555
No 481
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.59 E-value=0.0014 Score=56.99 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=30.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHHHHhcc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIARDVLKK 41 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~~l~~~ 41 (197)
+|.|+|+..|||||++.+|++ + | +.+||+|.=-.++..|
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pP 119 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPP 119 (398)
T ss_pred EEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCC
Confidence 688999999999999999986 3 5 5689998533344333
No 482
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0018 Score=52.48 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G 47 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAG 47 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 483
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.59 E-value=0.0018 Score=56.02 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 25 i~~l~G~nGsGKSTLl~~iaG 45 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAG 45 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 484
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.58 E-value=0.002 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
+++|+|++||||||+.+.+.- .|..
T Consensus 27 i~~ivGpNGaGKSTll~~i~~~~G~~ 52 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSMLFVFGFR 52 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhccC
Confidence 689999999999999999985 5644
No 485
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0018 Score=55.22 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.|..
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 486
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.58 E-value=0.0016 Score=52.00 Aligned_cols=34 Identities=24% Similarity=0.138 Sum_probs=26.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---C--CCeeehhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G--~~~id~D~i~~ 36 (197)
.|.|+|++||||||+++.+.+ . | +.+++++.+..
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 588999999999999999973 2 3 44777766653
No 487
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.57 E-value=0.002 Score=50.90 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=24.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-----CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-----NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-----~G~~~id~D 32 (197)
+++|.|++||||||+.+..+- .|-..|+-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~ 61 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASGEILINGV 61 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCe
Confidence 689999999999999999984 255566543
No 488
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.57 E-value=0.0021 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999985
No 489
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.0019 Score=54.66 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 490
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.57 E-value=0.0019 Score=55.65 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 491
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.57 E-value=0.0018 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=15.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
..+.|+|.+|+|||++.+.+.
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999775
No 492
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0019 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~G 55 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 493
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.56 E-value=0.002 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
.|+++|.+||||||+.+.+...
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 494
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.56 E-value=0.0019 Score=55.72 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 i~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.56 E-value=0.0018 Score=48.21 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
|+++|.+||||||+.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 496
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0019 Score=55.28 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+++.+..
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999985
No 497
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.55 E-value=0.0017 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.2
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
|.|.|++|+|||++++.|++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999874
No 498
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.55 E-value=0.002 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+.+.+.-
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 499
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.54 E-value=0.0031 Score=59.54 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.+.|+||||||++++.++. .|++++..
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 378999999999999999997 88887764
No 500
>PRK07933 thymidylate kinase; Validated
Probab=96.54 E-value=0.002 Score=51.79 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=23.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~~i 29 (197)
+.|++-|..||||||+++.|++ .|.+++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3699999999999999999985 366544
Done!