Query 029212
Match_columns 197
No_of_seqs 213 out of 1734
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1u_A Dephospho-COA kinase; s 100.0 2.5E-40 8.4E-45 264.1 15.3 164 1-164 9-204 (210)
2 1jjv_A Dephospho-COA kinase; P 100.0 9.6E-29 3.3E-33 195.0 16.1 164 1-164 2-199 (206)
3 2grj_A Dephospho-COA kinase; T 100.0 1.5E-28 5.3E-33 193.6 13.8 155 2-162 13-187 (192)
4 2f6r_A COA synthase, bifunctio 99.9 1.2E-26 4.3E-31 192.4 17.4 165 1-165 75-272 (281)
5 2if2_A Dephospho-COA kinase; a 99.9 1E-26 3.4E-31 183.0 12.9 163 1-164 1-194 (204)
6 1vht_A Dephospho-COA kinase; s 99.9 1.1E-25 3.8E-30 179.0 15.1 163 2-164 5-197 (218)
7 1uf9_A TT1252 protein; P-loop, 99.9 1.3E-23 4.6E-28 164.3 12.3 158 1-163 8-195 (203)
8 3lw7_A Adenylate kinase relate 99.7 5.5E-18 1.9E-22 128.4 8.7 154 2-163 2-178 (179)
9 1zuh_A Shikimate kinase; alpha 99.7 4.4E-19 1.5E-23 135.2 0.2 148 1-159 7-167 (168)
10 3ake_A Cytidylate kinase; CMP 99.7 1E-16 3.5E-21 125.4 11.8 160 1-160 1-207 (208)
11 1qf9_A UMP/CMP kinase, protein 99.7 2.2E-17 7.7E-22 127.4 7.2 158 1-161 6-191 (194)
12 3dl0_A Adenylate kinase; phosp 99.7 1.5E-16 5.2E-21 125.7 7.2 157 3-162 2-215 (216)
13 1dek_A Deoxynucleoside monopho 99.7 1.5E-17 5.1E-22 135.0 1.3 55 106-161 181-240 (241)
14 2h92_A Cytidylate kinase; ross 99.6 4.3E-15 1.5E-19 117.4 14.1 150 3-160 5-216 (219)
15 3vaa_A Shikimate kinase, SK; s 99.6 3.2E-16 1.1E-20 122.8 6.5 150 1-163 25-197 (199)
16 3trf_A Shikimate kinase, SK; a 99.6 1.9E-16 6.5E-21 122.1 4.8 148 2-162 6-175 (185)
17 3fb4_A Adenylate kinase; psych 99.6 3E-16 1E-20 123.9 4.8 157 3-162 2-215 (216)
18 3kb2_A SPBC2 prophage-derived 99.6 1.9E-15 6.7E-20 114.5 7.9 154 1-165 1-170 (173)
19 1q3t_A Cytidylate kinase; nucl 99.6 7.7E-15 2.6E-19 117.8 11.6 153 2-161 17-234 (236)
20 1e6c_A Shikimate kinase; phosp 99.6 5.4E-16 1.8E-20 118.0 2.7 153 1-160 2-169 (173)
21 2iyv_A Shikimate kinase, SK; t 99.6 3.3E-16 1.1E-20 120.7 1.6 144 2-159 3-166 (184)
22 1kag_A SKI, shikimate kinase I 99.6 3.1E-16 1.1E-20 119.5 0.9 150 2-160 5-171 (173)
23 3cm0_A Adenylate kinase; ATP-b 99.6 1.7E-15 5.7E-20 116.7 5.0 153 2-159 5-184 (186)
24 2pt5_A Shikimate kinase, SK; a 99.6 1.5E-15 5E-20 115.2 4.2 141 3-160 2-162 (168)
25 1uj2_A Uridine-cytidine kinase 99.6 4.4E-16 1.5E-20 126.4 1.0 146 1-162 22-234 (252)
26 1ukz_A Uridylate kinase; trans 99.6 8.3E-15 2.8E-19 114.5 8.2 155 1-161 15-201 (203)
27 1y63_A LMAJ004144AAA protein; 99.6 1E-16 3.4E-21 124.3 -3.1 148 2-164 11-177 (184)
28 1cke_A CK, MSSA, protein (cyti 99.6 7.6E-15 2.6E-19 116.4 7.8 160 2-163 6-224 (227)
29 2cdn_A Adenylate kinase; phosp 99.5 1.1E-14 3.6E-19 113.9 8.2 151 2-159 21-199 (201)
30 4e22_A Cytidylate kinase; P-lo 99.5 5.7E-14 1.9E-18 114.2 12.3 161 2-163 28-246 (252)
31 3tlx_A Adenylate kinase 2; str 99.5 1.1E-14 3.8E-19 117.8 6.9 156 2-160 30-242 (243)
32 2bwj_A Adenylate kinase 5; pho 99.5 9E-15 3.1E-19 113.5 6.0 154 2-162 13-197 (199)
33 3nwj_A ATSK2; P loop, shikimat 99.5 6.7E-15 2.3E-19 120.0 5.0 148 2-165 49-240 (250)
34 2pbr_A DTMP kinase, thymidylat 99.5 1.1E-13 3.8E-18 106.7 9.1 145 2-162 1-192 (195)
35 1tev_A UMP-CMP kinase; ploop, 99.5 9.3E-15 3.2E-19 112.7 2.5 42 2-43 4-46 (196)
36 2c95_A Adenylate kinase 1; tra 99.5 4E-14 1.4E-18 109.5 5.8 152 2-162 10-194 (196)
37 3t61_A Gluconokinase; PSI-biol 99.5 6.9E-14 2.4E-18 109.3 7.2 146 1-163 18-181 (202)
38 1via_A Shikimate kinase; struc 99.4 1.6E-14 5.4E-19 110.6 -0.1 145 1-160 4-165 (175)
39 3fdi_A Uncharacterized protein 99.4 1.3E-14 4.4E-19 114.5 -2.0 154 2-160 7-197 (201)
40 2z0h_A DTMP kinase, thymidylat 99.4 9.7E-13 3.3E-17 101.7 6.8 60 104-163 133-193 (197)
41 1knq_A Gluconate kinase; ALFA/ 99.3 2.3E-12 7.7E-17 98.3 8.3 34 2-35 9-43 (175)
42 4eun_A Thermoresistant glucoki 99.3 2E-12 6.8E-17 101.1 5.1 144 3-161 31-193 (200)
43 2j41_A Guanylate kinase; GMP, 99.3 1.8E-12 6.1E-17 101.0 4.4 59 105-164 131-189 (207)
44 2pez_A Bifunctional 3'-phospho 99.3 1.9E-13 6.6E-18 104.8 -1.5 35 2-36 6-46 (179)
45 2vli_A Antibiotic resistance p 99.3 9.2E-12 3.1E-16 95.2 7.7 35 1-35 5-41 (183)
46 3hdt_A Putative kinase; struct 99.3 3.4E-12 1.2E-16 102.3 5.4 157 2-161 15-218 (223)
47 1ak2_A Adenylate kinase isoenz 99.3 1.3E-11 4.4E-16 98.7 8.6 52 1-52 16-68 (233)
48 2qt1_A Nicotinamide riboside k 99.3 5.7E-13 1.9E-17 104.5 0.4 36 1-36 21-58 (207)
49 3asz_A Uridine kinase; cytidin 99.3 1.1E-12 3.7E-17 103.0 2.0 35 2-36 7-44 (211)
50 1zak_A Adenylate kinase; ATP:A 99.2 8.4E-12 2.9E-16 98.9 6.2 42 1-42 5-47 (222)
51 3r20_A Cytidylate kinase; stru 99.2 2.4E-11 8.2E-16 97.9 7.5 38 2-39 10-48 (233)
52 3ch4_B Pmkase, phosphomevalona 99.2 1.2E-11 4.2E-16 97.4 5.4 39 1-39 11-54 (202)
53 3tr0_A Guanylate kinase, GMP k 99.2 1.6E-11 5.4E-16 95.5 5.5 59 104-163 130-188 (205)
54 3iij_A Coilin-interacting nucl 99.2 1.9E-12 6.6E-17 99.2 0.0 37 2-38 12-49 (180)
55 3sr0_A Adenylate kinase; phosp 99.2 4.3E-11 1.5E-15 94.7 7.5 48 3-50 2-50 (206)
56 3lnc_A Guanylate kinase, GMP k 99.2 1.7E-11 5.7E-16 97.8 4.8 60 105-165 153-212 (231)
57 3umf_A Adenylate kinase; rossm 99.2 2.5E-11 8.5E-16 96.9 5.3 158 2-162 30-214 (217)
58 2wwf_A Thymidilate kinase, put 99.1 2.5E-11 8.5E-16 94.9 4.8 57 105-162 143-200 (212)
59 3a00_A Guanylate kinase, GMP k 99.1 2.5E-12 8.4E-17 99.5 -1.6 56 104-160 126-183 (186)
60 2qor_A Guanylate kinase; phosp 99.1 7.4E-11 2.5E-15 92.3 6.6 61 102-163 136-198 (204)
61 3a4m_A L-seryl-tRNA(SEC) kinas 99.1 5.9E-11 2E-15 96.7 6.2 38 1-38 4-47 (260)
62 3tau_A Guanylate kinase, GMP k 99.1 1.2E-10 4E-15 91.7 6.4 61 103-164 131-191 (208)
63 1qhx_A CPT, protein (chloramph 99.1 2.2E-11 7.6E-16 92.8 2.0 37 2-38 4-43 (178)
64 2jaq_A Deoxyguanosine kinase; 99.0 1.2E-11 4E-16 95.9 -1.7 60 104-164 136-203 (205)
65 2jeo_A Uridine-cytidine kinase 99.0 1.7E-10 5.7E-15 92.9 3.8 53 109-161 170-235 (245)
66 1nn5_A Similar to deoxythymidy 99.0 2.5E-10 8.4E-15 89.2 4.2 60 105-164 142-203 (215)
67 1aky_A Adenylate kinase; ATP:A 99.0 5.1E-10 1.7E-14 88.4 6.0 53 1-53 4-57 (220)
68 1rz3_A Hypothetical protein rb 99.0 1.4E-11 4.7E-16 96.5 -3.3 65 2-76 23-96 (201)
69 3be4_A Adenylate kinase; malar 98.9 6.8E-10 2.3E-14 87.7 5.3 42 1-42 5-47 (217)
70 1zd8_A GTP:AMP phosphotransfer 98.9 1.3E-09 4.3E-14 86.6 6.1 53 1-53 7-60 (227)
71 2plr_A DTMP kinase, probable t 98.9 1.7E-09 5.7E-14 84.1 6.4 29 2-30 5-36 (213)
72 1e4v_A Adenylate kinase; trans 98.9 9.1E-10 3.1E-14 86.7 4.7 41 3-43 2-43 (214)
73 2xb4_A Adenylate kinase; ATP-b 98.9 2.8E-09 9.4E-14 84.7 5.8 51 3-53 2-53 (223)
74 2v54_A DTMP kinase, thymidylat 98.8 4.6E-09 1.6E-13 81.3 6.5 31 2-32 5-37 (204)
75 1sq5_A Pantothenate kinase; P- 98.8 1.8E-10 6E-15 96.2 -2.4 33 2-34 81-121 (308)
76 3uie_A Adenylyl-sulfate kinase 98.8 8.4E-10 2.9E-14 86.0 1.0 37 2-38 26-68 (200)
77 3gmt_A Adenylate kinase; ssgci 98.8 7E-09 2.4E-13 83.3 6.1 53 2-54 9-62 (230)
78 2rhm_A Putative kinase; P-loop 98.8 5.2E-09 1.8E-13 80.2 5.1 38 2-39 6-44 (193)
79 1kht_A Adenylate kinase; phosp 98.8 4.2E-09 1.4E-13 80.5 3.8 39 2-40 4-48 (192)
80 1ly1_A Polynucleotide kinase; 98.8 6.1E-09 2.1E-13 78.8 4.6 40 1-40 1-43 (181)
81 4eaq_A DTMP kinase, thymidylat 98.7 8.3E-09 2.8E-13 82.6 4.6 62 103-164 159-227 (229)
82 1nks_A Adenylate kinase; therm 98.7 7.2E-09 2.5E-13 79.2 3.6 39 1-39 1-45 (194)
83 1ex7_A Guanylate kinase; subst 98.7 2.2E-08 7.5E-13 77.9 6.1 57 103-160 125-183 (186)
84 2ze6_A Isopentenyl transferase 98.6 1.1E-08 3.8E-13 82.9 3.1 35 1-35 1-36 (253)
85 2gks_A Bifunctional SAT/APS ki 98.6 1.7E-08 5.8E-13 90.5 2.5 37 2-38 373-415 (546)
86 1lvg_A Guanylate kinase, GMP k 98.6 3.8E-08 1.3E-12 76.7 4.2 56 106-162 130-188 (198)
87 1ltq_A Polynucleotide kinase; 98.5 1E-07 3.5E-12 78.3 4.6 40 1-40 2-43 (301)
88 2bbw_A Adenylate kinase 4, AK4 98.4 1.3E-07 4.6E-12 75.7 4.6 37 2-38 28-65 (246)
89 1a7j_A Phosphoribulokinase; tr 98.4 3.2E-08 1.1E-12 81.9 -0.2 35 2-36 6-46 (290)
90 1s96_A Guanylate kinase, GMP k 98.3 1.3E-06 4.4E-11 69.4 8.0 56 107-163 144-199 (219)
91 2p5t_B PEZT; postsegregational 98.3 3.6E-07 1.2E-11 73.7 4.6 35 2-36 33-70 (253)
92 1zp6_A Hypothetical protein AT 98.3 4.6E-07 1.6E-11 69.3 4.8 36 2-37 10-48 (191)
93 4edh_A DTMP kinase, thymidylat 98.3 3.1E-07 1.1E-11 72.7 3.7 61 104-164 143-209 (213)
94 1gvn_B Zeta; postsegregational 98.3 4.3E-07 1.5E-11 74.9 4.5 36 2-37 34-72 (287)
95 2vp4_A Deoxynucleoside kinase; 98.3 7.6E-08 2.6E-12 76.6 -0.1 60 104-164 158-227 (230)
96 2ga8_A Hypothetical 39.9 kDa p 98.2 9.8E-08 3.4E-12 81.1 -0.8 54 2-59 25-99 (359)
97 3lv8_A DTMP kinase, thymidylat 98.2 3.1E-07 1.1E-11 73.9 2.1 61 104-165 166-232 (236)
98 2bdt_A BH3686; alpha-beta prot 98.2 1E-06 3.6E-11 67.4 4.5 35 2-36 3-39 (189)
99 3d3q_A TRNA delta(2)-isopenten 98.2 6E-07 2.1E-11 75.9 3.1 32 3-34 9-41 (340)
100 3v9p_A DTMP kinase, thymidylat 98.2 4.2E-07 1.4E-11 72.7 1.7 59 104-162 163-227 (227)
101 3zvl_A Bifunctional polynucleo 98.2 6E-07 2.1E-11 77.7 2.9 33 2-34 259-292 (416)
102 2yvu_A Probable adenylyl-sulfa 98.2 6.8E-07 2.3E-11 68.4 2.4 37 2-38 14-56 (186)
103 3crm_A TRNA delta(2)-isopenten 98.2 8.3E-07 2.9E-11 74.5 3.0 33 2-34 6-39 (323)
104 3ld9_A DTMP kinase, thymidylat 98.2 2.6E-07 8.9E-12 73.8 -0.1 58 104-163 157-217 (223)
105 1m7g_A Adenylylsulfate kinase; 98.1 8.4E-07 2.9E-11 69.4 1.9 36 2-37 26-68 (211)
106 3a8t_A Adenylate isopentenyltr 98.1 1.4E-06 4.7E-11 73.6 3.1 33 2-34 41-74 (339)
107 3ney_A 55 kDa erythrocyte memb 98.0 5.3E-06 1.8E-10 64.9 5.5 33 135-168 164-196 (197)
108 4hlc_A DTMP kinase, thymidylat 98.0 5.7E-06 2E-10 64.9 5.1 29 2-30 3-34 (205)
109 3hjn_A DTMP kinase, thymidylat 98.0 2.9E-06 1E-10 66.1 2.5 28 3-30 2-33 (197)
110 4tmk_A Protein (thymidylate ki 97.9 4.2E-06 1.4E-10 66.1 3.0 61 104-165 144-210 (213)
111 2axn_A 6-phosphofructo-2-kinas 97.9 3.7E-06 1.3E-10 74.9 2.8 39 2-40 36-80 (520)
112 4gp7_A Metallophosphoesterase; 97.9 7.7E-06 2.6E-10 62.0 3.7 35 3-38 11-45 (171)
113 1g8f_A Sulfate adenylyltransfe 97.9 4E-06 1.4E-10 74.5 2.4 32 2-33 396-435 (511)
114 1x6v_B Bifunctional 3'-phospho 97.8 7.2E-06 2.5E-10 74.5 3.5 31 2-32 53-87 (630)
115 3exa_A TRNA delta(2)-isopenten 97.8 9.1E-06 3.1E-10 68.0 3.3 33 2-34 4-37 (322)
116 1m8p_A Sulfate adenylyltransfe 97.8 1E-05 3.5E-10 72.8 3.3 37 2-38 397-440 (573)
117 3foz_A TRNA delta(2)-isopenten 97.8 1.2E-05 3.9E-10 67.2 3.3 32 2-33 11-43 (316)
118 3tqc_A Pantothenate kinase; bi 97.8 1.2E-05 4E-10 67.5 3.3 33 2-34 93-133 (321)
119 2qmh_A HPR kinase/phosphorylas 97.8 1.5E-05 5.1E-10 62.5 3.5 33 2-34 35-67 (205)
120 1p5z_B DCK, deoxycytidine kina 97.7 1E-05 3.5E-10 65.3 2.2 30 1-30 24-55 (263)
121 1kgd_A CASK, peripheral plasma 97.7 2.3E-05 7.7E-10 59.7 3.2 50 107-162 128-179 (180)
122 3c8u_A Fructokinase; YP_612366 97.7 2.4E-05 8.1E-10 60.9 3.2 39 106-144 161-207 (208)
123 1ye8_A Protein THEP1, hypothet 97.6 2.5E-05 8.6E-10 59.8 3.2 26 2-27 1-27 (178)
124 3cr8_A Sulfate adenylyltranfer 97.6 1.5E-05 5.1E-10 71.5 2.1 36 2-37 370-412 (552)
125 3eph_A TRNA isopentenyltransfe 97.6 2.1E-05 7.1E-10 67.9 2.4 32 2-33 3-35 (409)
126 1gtv_A TMK, thymidylate kinase 97.6 2E-05 6.8E-10 61.0 1.6 22 2-23 1-22 (214)
127 1bif_A 6-phosphofructo-2-kinas 97.6 1.7E-05 5.8E-10 69.5 1.3 38 2-39 40-83 (469)
128 2ocp_A DGK, deoxyguanosine kin 97.5 6.8E-05 2.3E-09 59.5 4.0 27 2-28 3-31 (241)
129 2f1r_A Molybdopterin-guanine d 97.4 4.4E-05 1.5E-09 58.2 2.0 23 1-23 2-24 (171)
130 3cf0_A Transitional endoplasmi 97.4 0.00025 8.5E-09 58.3 6.7 48 3-50 51-101 (301)
131 1znw_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 58.0 3.3 21 3-23 22-42 (207)
132 3aez_A Pantothenate kinase; tr 97.4 7.7E-05 2.6E-09 62.2 3.3 22 2-23 91-112 (312)
133 1odf_A YGR205W, hypothetical 3 97.4 8.9E-05 3E-09 61.1 3.6 22 2-23 32-53 (290)
134 3ec2_A DNA replication protein 97.4 0.00014 4.8E-09 54.9 4.4 36 3-38 40-82 (180)
135 1lv7_A FTSH; alpha/beta domain 97.4 7.3E-05 2.5E-09 59.7 3.0 29 3-31 47-76 (257)
136 1xjc_A MOBB protein homolog; s 97.3 0.00012 3.9E-09 55.9 3.4 27 1-27 4-34 (169)
137 3tqf_A HPR(Ser) kinase; transf 97.3 0.00012 4E-09 56.2 3.3 33 3-35 18-50 (181)
138 1htw_A HI0065; nucleotide-bind 97.3 0.00012 4.1E-09 55.0 3.3 21 3-23 35-55 (158)
139 2x8a_A Nuclear valosin-contain 97.3 0.00011 3.7E-09 60.0 3.2 27 4-30 47-74 (274)
140 1nij_A Hypothetical protein YJ 97.3 0.00011 3.8E-09 61.1 3.3 22 1-22 4-25 (318)
141 3tif_A Uncharacterized ABC tra 97.3 0.00011 3.6E-09 58.7 3.0 21 3-23 33-53 (235)
142 1z6g_A Guanylate kinase; struc 97.3 9.9E-05 3.4E-09 58.0 2.8 57 107-164 152-210 (218)
143 2pcj_A ABC transporter, lipopr 97.3 0.00011 3.9E-09 58.1 2.9 21 3-23 32-52 (224)
144 3t15_A Ribulose bisphosphate c 97.3 0.0001 3.6E-09 60.5 2.6 29 3-31 38-67 (293)
145 2ehv_A Hypothetical protein PH 97.3 0.00015 5.2E-09 57.1 3.3 20 3-22 32-51 (251)
146 2onk_A Molybdate/tungstate ABC 97.3 0.00015 5.3E-09 58.1 3.3 21 3-23 26-46 (240)
147 1np6_A Molybdopterin-guanine d 97.2 0.00018 6.2E-09 54.9 3.4 22 1-22 6-27 (174)
148 3gfo_A Cobalt import ATP-bindi 97.2 0.00015 5.2E-09 59.3 3.0 21 3-23 36-56 (275)
149 1ixz_A ATP-dependent metallopr 97.2 0.0002 6.9E-09 57.1 3.6 27 4-30 52-79 (254)
150 3hws_A ATP-dependent CLP prote 97.2 0.00019 6.4E-09 60.5 3.6 30 3-32 53-83 (363)
151 2cbz_A Multidrug resistance-as 97.2 0.00017 5.7E-09 57.7 3.0 21 3-23 33-53 (237)
152 4g1u_C Hemin import ATP-bindin 97.2 0.00016 5.5E-09 58.8 3.0 21 3-23 39-59 (266)
153 1ji0_A ABC transporter; ATP bi 97.2 0.00017 5.8E-09 57.7 3.0 21 3-23 34-54 (240)
154 4a74_A DNA repair and recombin 97.2 0.00019 6.4E-09 55.8 3.2 21 3-23 27-47 (231)
155 1b0u_A Histidine permease; ABC 97.2 0.00017 6E-09 58.4 3.0 21 3-23 34-54 (262)
156 1g6h_A High-affinity branched- 97.2 0.00018 6.1E-09 58.2 3.0 21 3-23 35-55 (257)
157 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00019 6.5E-09 57.0 3.1 28 3-30 41-69 (262)
158 3b85_A Phosphate starvation-in 97.2 0.00015 5.2E-09 56.9 2.5 21 3-23 24-44 (208)
159 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00021 7.1E-09 57.5 3.3 22 3-24 31-52 (250)
160 1c9k_A COBU, adenosylcobinamid 97.2 0.00023 7.9E-09 54.8 3.4 25 4-28 2-26 (180)
161 1mv5_A LMRA, multidrug resista 97.2 0.00019 6.5E-09 57.5 3.0 21 3-23 30-50 (243)
162 2ff7_A Alpha-hemolysin translo 97.2 0.00019 6.6E-09 57.7 3.0 21 3-23 37-57 (247)
163 2olj_A Amino acid ABC transpor 97.2 0.00019 6.6E-09 58.3 3.0 21 3-23 52-72 (263)
164 2pze_A Cystic fibrosis transme 97.2 0.0002 6.8E-09 56.9 3.0 21 3-23 36-56 (229)
165 1vpl_A ABC transporter, ATP-bi 97.1 0.0002 6.9E-09 58.0 3.0 21 3-23 43-63 (256)
166 1sgw_A Putative ABC transporte 97.1 0.00016 5.6E-09 57.0 2.4 21 3-23 37-57 (214)
167 1g41_A Heat shock protein HSLU 97.1 0.00024 8.1E-09 62.0 3.6 30 3-32 52-82 (444)
168 3b9p_A CG5977-PA, isoform A; A 97.1 0.00028 9.4E-09 57.4 3.7 28 3-30 56-84 (297)
169 2i3b_A HCR-ntpase, human cance 97.1 0.0002 7E-09 55.3 2.8 21 3-23 3-23 (189)
170 2zu0_C Probable ATP-dependent 97.1 0.00024 8.2E-09 57.8 3.3 22 3-24 48-69 (267)
171 1um8_A ATP-dependent CLP prote 97.1 0.00025 8.7E-09 59.9 3.6 30 3-32 74-104 (376)
172 2qi9_C Vitamin B12 import ATP- 97.1 0.00022 7.7E-09 57.4 3.0 21 3-23 28-48 (249)
173 2ixe_A Antigen peptide transpo 97.1 0.00023 7.9E-09 58.0 3.0 21 3-23 47-67 (271)
174 3h4m_A Proteasome-activating n 97.1 0.00031 1.1E-08 56.7 3.7 28 3-30 53-81 (285)
175 2yz2_A Putative ABC transporte 97.1 0.00024 8.3E-09 57.7 3.0 21 3-23 35-55 (266)
176 2ihy_A ABC transporter, ATP-bi 97.1 0.00024 8.1E-09 58.2 3.0 21 3-23 49-69 (279)
177 2ghi_A Transport protein; mult 97.1 0.00025 8.4E-09 57.5 3.0 21 3-23 48-68 (260)
178 1iy2_A ATP-dependent metallopr 97.1 0.00032 1.1E-08 56.8 3.6 27 4-30 76-103 (278)
179 2dyk_A GTP-binding protein; GT 97.1 0.00047 1.6E-08 50.1 4.2 24 1-24 1-24 (161)
180 2nq2_C Hypothetical ABC transp 97.1 0.00026 8.9E-09 57.1 3.0 21 3-23 33-53 (253)
181 2eyu_A Twitching motility prot 97.1 0.0003 1E-08 57.1 3.3 21 3-23 27-47 (261)
182 4b4t_K 26S protease regulatory 97.0 0.00023 7.7E-09 61.9 2.5 28 4-31 209-237 (428)
183 1in4_A RUVB, holliday junction 97.0 0.0003 1E-08 58.8 3.1 26 3-28 53-79 (334)
184 2v9p_A Replication protein E1; 97.0 0.00035 1.2E-08 58.0 3.3 21 3-23 128-148 (305)
185 1d2n_A N-ethylmaleimide-sensit 97.0 0.00047 1.6E-08 55.5 3.9 29 3-31 66-95 (272)
186 4b4t_L 26S protease subunit RP 97.0 0.00026 9E-09 61.6 2.5 29 3-31 217-246 (437)
187 2pjz_A Hypothetical protein ST 97.0 0.00034 1.2E-08 56.8 3.0 21 3-23 32-52 (263)
188 2w58_A DNAI, primosome compone 97.0 0.00073 2.5E-08 51.7 4.7 37 2-38 55-97 (202)
189 2r2a_A Uncharacterized protein 97.0 0.00041 1.4E-08 54.1 3.2 21 1-21 5-25 (199)
190 1svm_A Large T antigen; AAA+ f 97.0 0.00039 1.3E-08 59.4 3.2 28 3-30 171-199 (377)
191 4b4t_M 26S protease regulatory 97.0 0.0003 1E-08 61.2 2.5 29 3-31 217-246 (434)
192 3eie_A Vacuolar protein sortin 97.0 0.00045 1.5E-08 57.2 3.5 33 3-35 53-88 (322)
193 1jbk_A CLPB protein; beta barr 97.0 0.00036 1.2E-08 52.0 2.6 21 3-23 45-65 (195)
194 1ofh_A ATP-dependent HSL prote 96.9 0.00037 1.3E-08 56.5 2.9 28 3-30 52-80 (310)
195 3sop_A Neuronal-specific septi 96.9 0.00047 1.6E-08 56.2 3.4 22 2-23 3-24 (270)
196 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00048 1.6E-08 53.4 3.3 20 3-22 25-44 (235)
197 4b4t_J 26S protease regulatory 96.9 0.00032 1.1E-08 60.5 2.5 28 4-31 185-213 (405)
198 2p65_A Hypothetical protein PF 96.9 0.00034 1.2E-08 52.1 2.3 21 3-23 45-65 (187)
199 3n70_A Transport activator; si 96.9 0.00069 2.4E-08 49.5 3.7 21 3-23 26-46 (145)
200 2r62_A Cell division protease 96.9 0.00018 6E-09 57.7 0.5 27 4-30 47-74 (268)
201 1lw7_A Transcriptional regulat 96.9 0.00051 1.7E-08 58.0 3.3 22 2-23 171-192 (365)
202 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00049 1.7E-08 58.5 3.2 21 3-23 32-52 (359)
203 2bbs_A Cystic fibrosis transme 96.9 0.00047 1.6E-08 56.8 2.9 21 3-23 66-86 (290)
204 3tui_C Methionine import ATP-b 96.9 0.00057 1.9E-08 58.2 3.3 21 3-23 56-76 (366)
205 2cvh_A DNA repair and recombin 96.9 0.00062 2.1E-08 52.5 3.3 30 3-32 22-54 (220)
206 3nh6_A ATP-binding cassette SU 96.9 0.0004 1.4E-08 57.7 2.3 21 3-23 82-102 (306)
207 2kjq_A DNAA-related protein; s 96.9 0.00042 1.4E-08 51.3 2.2 21 3-23 38-58 (149)
208 3kta_A Chromosome segregation 96.8 0.00062 2.1E-08 51.2 3.2 21 3-23 28-48 (182)
209 1z47_A CYSA, putative ABC-tran 96.8 0.00059 2E-08 57.8 3.3 21 3-23 43-63 (355)
210 1rj9_A FTSY, signal recognitio 96.8 0.00061 2.1E-08 56.5 3.3 21 3-23 104-124 (304)
211 3b9q_A Chloroplast SRP recepto 96.8 0.00061 2.1E-08 56.4 3.3 22 2-23 101-122 (302)
212 2yyz_A Sugar ABC transporter, 96.8 0.00061 2.1E-08 57.9 3.3 21 3-23 31-51 (359)
213 3rlf_A Maltose/maltodextrin im 96.8 0.0006 2.1E-08 58.3 3.3 21 3-23 31-51 (381)
214 3pfi_A Holliday junction ATP-d 96.8 0.00084 2.9E-08 55.5 4.1 29 3-31 57-86 (338)
215 2it1_A 362AA long hypothetical 96.8 0.00065 2.2E-08 57.7 3.3 21 3-23 31-51 (362)
216 3d31_A Sulfate/molybdate ABC t 96.8 0.00054 1.8E-08 57.9 2.7 21 3-23 28-48 (348)
217 2qp9_X Vacuolar protein sortin 96.8 0.00051 1.8E-08 57.9 2.5 28 4-31 87-115 (355)
218 1l8q_A Chromosomal replication 96.8 0.0012 4E-08 54.5 4.6 35 3-37 39-79 (324)
219 1v43_A Sugar-binding transport 96.8 0.0007 2.4E-08 57.8 3.3 21 3-23 39-59 (372)
220 1g29_1 MALK, maltose transport 96.8 0.00072 2.5E-08 57.6 3.3 21 3-23 31-51 (372)
221 4b4t_I 26S protease regulatory 96.8 0.00054 1.8E-08 59.5 2.5 29 3-31 218-247 (437)
222 3d8b_A Fidgetin-like protein 1 96.8 0.00072 2.5E-08 56.9 3.2 28 3-30 119-147 (357)
223 1n0w_A DNA repair protein RAD5 96.7 0.00083 2.8E-08 52.6 3.3 21 3-23 26-46 (243)
224 1oxx_K GLCV, glucose, ABC tran 96.7 0.00054 1.9E-08 58.0 2.3 21 3-23 33-53 (353)
225 1oix_A RAS-related protein RAB 96.7 0.0012 3.9E-08 50.2 3.9 23 2-24 30-52 (191)
226 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.00094 3.2E-08 55.5 3.7 28 3-30 47-76 (322)
227 3e70_C DPA, signal recognition 96.7 0.00081 2.8E-08 56.4 3.3 22 2-23 130-151 (328)
228 3jvv_A Twitching mobility prot 96.7 0.00082 2.8E-08 56.9 3.4 20 3-22 125-144 (356)
229 4b4t_H 26S protease regulatory 96.7 0.00051 1.7E-08 60.2 2.1 29 3-31 245-274 (467)
230 1cr0_A DNA primase/helicase; R 96.7 0.00084 2.9E-08 54.7 3.2 20 3-22 37-56 (296)
231 1sxj_A Activator 1 95 kDa subu 96.7 0.00088 3E-08 59.3 3.4 30 2-31 78-108 (516)
232 2wsm_A Hydrogenase expression/ 96.7 0.0011 3.7E-08 51.3 3.6 23 1-23 30-52 (221)
233 2gza_A Type IV secretion syste 96.7 0.00073 2.5E-08 57.2 2.8 21 3-23 177-197 (361)
234 2qm8_A GTPase/ATPase; G protei 96.7 0.0009 3.1E-08 56.1 3.3 21 2-22 56-76 (337)
235 2wji_A Ferrous iron transport 96.7 0.0013 4.4E-08 48.6 3.7 22 2-23 4-25 (165)
236 3bos_A Putative DNA replicatio 96.7 0.0011 3.6E-08 51.5 3.4 32 3-34 54-91 (242)
237 3gd7_A Fusion complex of cysti 96.7 0.00091 3.1E-08 57.4 3.2 21 3-23 49-69 (390)
238 1ko7_A HPR kinase/phosphatase; 96.7 0.00099 3.4E-08 55.6 3.3 33 3-35 146-178 (314)
239 1vma_A Cell division protein F 96.7 0.0011 3.9E-08 54.9 3.7 32 2-33 105-142 (306)
240 3syl_A Protein CBBX; photosynt 96.7 0.00043 1.5E-08 56.5 1.0 21 3-23 69-89 (309)
241 3vfd_A Spastin; ATPase, microt 96.6 0.001 3.4E-08 56.6 3.3 29 3-31 150-179 (389)
242 3tmk_A Thymidylate kinase; pho 96.6 0.001 3.4E-08 52.5 3.1 25 2-26 6-31 (216)
243 2ce7_A Cell division protein F 96.6 0.001 3.5E-08 58.5 3.4 29 3-31 51-80 (476)
244 2ewv_A Twitching motility prot 96.6 0.0011 3.7E-08 56.5 3.4 21 3-23 138-158 (372)
245 2www_A Methylmalonic aciduria 96.6 0.0012 4E-08 55.7 3.5 22 2-23 75-96 (349)
246 2og2_A Putative signal recogni 96.6 0.0011 3.7E-08 56.3 3.3 22 2-23 158-179 (359)
247 2f9l_A RAB11B, member RAS onco 96.6 0.0014 4.6E-08 50.0 3.6 23 2-24 6-28 (199)
248 3iby_A Ferrous iron transport 96.6 0.001 3.4E-08 53.6 2.9 23 1-23 1-23 (256)
249 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00084 2.9E-08 58.8 2.6 30 3-32 140-176 (460)
250 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00075 2.6E-08 56.5 2.1 21 3-23 173-193 (330)
251 2c9o_A RUVB-like 1; hexameric 96.6 0.00099 3.4E-08 58.0 2.9 29 3-31 65-96 (456)
252 1knx_A Probable HPR(Ser) kinas 96.6 0.0012 4E-08 55.1 3.1 32 3-34 149-180 (312)
253 3cf2_A TER ATPase, transitiona 96.6 0.0011 3.8E-08 61.8 3.2 29 3-31 240-269 (806)
254 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0012 4.1E-08 58.9 3.3 21 3-23 49-69 (538)
255 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0014 4.7E-08 58.1 3.6 27 4-30 67-94 (499)
256 1nlf_A Regulatory protein REPA 96.5 0.0013 4.4E-08 53.3 3.2 20 3-22 32-51 (279)
257 2zan_A Vacuolar protein sortin 96.5 0.0021 7.3E-08 55.8 4.8 35 3-37 169-207 (444)
258 1yrb_A ATP(GTP)binding protein 96.5 0.0014 4.7E-08 52.1 3.3 32 2-33 15-51 (262)
259 2cxx_A Probable GTP-binding pr 96.5 0.0013 4.4E-08 49.1 2.9 23 1-23 1-23 (190)
260 1njg_A DNA polymerase III subu 96.5 0.0015 5.3E-08 50.1 3.4 21 3-23 47-67 (250)
261 3ozx_A RNAse L inhibitor; ATP 96.5 0.0012 4.1E-08 58.9 3.0 21 3-23 27-47 (538)
262 1fnn_A CDC6P, cell division co 96.5 0.0012 4.1E-08 55.1 2.8 22 2-23 45-66 (389)
263 1p9r_A General secretion pathw 96.5 0.0015 5E-08 56.6 3.3 21 3-23 169-189 (418)
264 3co5_A Putative two-component 96.5 0.00069 2.4E-08 49.4 1.1 32 3-34 29-62 (143)
265 2gj8_A MNME, tRNA modification 96.5 0.0024 8.4E-08 47.6 4.0 23 2-24 5-27 (172)
266 2yhs_A FTSY, cell division pro 96.4 0.0016 5.4E-08 57.6 3.3 22 2-23 294-315 (503)
267 2ce2_X GTPase HRAS; signaling 96.4 0.0022 7.4E-08 46.3 3.6 22 2-23 4-25 (166)
268 2r44_A Uncharacterized protein 96.4 0.0017 6E-08 53.5 3.3 27 3-29 48-75 (331)
269 2chg_A Replication factor C sm 96.4 0.0018 6.1E-08 49.2 3.1 21 3-23 40-60 (226)
270 2px0_A Flagellar biosynthesis 96.4 0.0017 5.9E-08 53.5 3.2 31 3-33 107-144 (296)
271 2dr3_A UPF0273 protein PH0284; 96.4 0.0018 6.2E-08 50.6 3.2 20 3-22 25-44 (247)
272 1pui_A ENGB, probable GTP-bind 96.4 0.00094 3.2E-08 51.1 1.5 22 2-23 27-48 (210)
273 1cp2_A CP2, nitrogenase iron p 96.4 0.0026 8.9E-08 50.8 4.1 33 1-33 1-39 (269)
274 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0018 6E-08 57.8 3.3 21 3-23 314-334 (538)
275 3j16_B RLI1P; ribosome recycli 96.4 0.0018 6.1E-08 58.7 3.3 21 3-23 105-125 (608)
276 1tq4_A IIGP1, interferon-induc 96.4 0.0018 6.1E-08 56.0 3.2 21 3-23 71-91 (413)
277 2hf9_A Probable hydrogenase ni 96.4 0.0024 8.2E-08 49.4 3.6 22 2-23 39-60 (226)
278 2qen_A Walker-type ATPase; unk 96.4 0.0024 8.2E-08 52.4 3.8 32 3-34 33-65 (350)
279 3ozx_A RNAse L inhibitor; ATP 96.4 0.0017 5.7E-08 58.0 3.0 21 3-23 296-316 (538)
280 3euj_A Chromosome partition pr 96.3 0.0019 6.6E-08 56.9 3.3 20 3-22 31-50 (483)
281 2wjg_A FEOB, ferrous iron tran 96.3 0.0026 8.8E-08 47.5 3.6 22 2-23 8-29 (188)
282 3pvs_A Replication-associated 96.3 0.0023 7.8E-08 55.8 3.7 28 3-30 52-80 (447)
283 2afh_E Nitrogenase iron protei 96.3 0.0029 9.9E-08 51.3 4.1 33 1-33 2-40 (289)
284 3kl4_A SRP54, signal recogniti 96.3 0.0017 5.8E-08 56.4 2.9 32 2-33 98-135 (433)
285 4fcw_A Chaperone protein CLPB; 96.3 0.0021 7.3E-08 52.2 3.3 21 3-23 49-69 (311)
286 1hqc_A RUVB; extended AAA-ATPa 96.3 0.0014 4.8E-08 53.7 2.1 27 3-29 40-67 (324)
287 2orw_A Thymidine kinase; TMTK, 96.3 0.0022 7.5E-08 49.1 3.1 20 2-21 4-23 (184)
288 2qag_B Septin-6, protein NEDD5 96.3 0.002 6.7E-08 55.9 3.1 21 3-23 44-64 (427)
289 1z2a_A RAS-related protein RAB 96.3 0.0028 9.6E-08 46.1 3.6 22 2-23 6-27 (168)
290 2yv5_A YJEQ protein; hydrolase 96.3 0.0023 7.8E-08 52.8 3.3 20 3-22 167-186 (302)
291 3bk7_A ABC transporter ATP-bin 96.3 0.0018 6.3E-08 58.5 3.0 21 3-23 119-139 (607)
292 3bk7_A ABC transporter ATP-bin 96.3 0.0021 7.2E-08 58.2 3.3 21 3-23 384-404 (607)
293 2qgz_A Helicase loader, putati 96.3 0.0049 1.7E-07 50.9 5.3 37 3-39 154-197 (308)
294 1pzn_A RAD51, DNA repair and r 96.3 0.0024 8.1E-08 53.8 3.4 22 2-23 132-153 (349)
295 3m6a_A ATP-dependent protease 96.3 0.0021 7.2E-08 57.3 3.3 26 3-28 110-136 (543)
296 2qby_A CDC6 homolog 1, cell di 96.3 0.0016 5.5E-08 54.1 2.3 21 3-23 47-67 (386)
297 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0027 9.1E-08 46.9 3.3 20 3-22 25-44 (149)
298 1tue_A Replication protein E1; 96.3 0.0017 5.7E-08 51.1 2.2 28 3-30 60-88 (212)
299 1p6x_A Thymidine kinase; P-loo 96.3 0.0026 8.8E-08 53.5 3.5 22 2-23 8-29 (334)
300 3p32_A Probable GTPase RV1496/ 96.3 0.0025 8.7E-08 53.6 3.5 32 2-33 80-117 (355)
301 1u8z_A RAS-related protein RAL 96.3 0.0039 1.3E-07 45.1 4.1 22 2-23 5-26 (168)
302 1zu4_A FTSY; GTPase, signal re 96.3 0.0028 9.7E-08 52.8 3.7 32 2-33 106-143 (320)
303 3k53_A Ferrous iron transport 96.3 0.0026 8.8E-08 51.3 3.4 22 2-23 4-25 (271)
304 2oap_1 GSPE-2, type II secreti 96.2 0.002 7E-08 57.1 2.9 21 3-23 262-282 (511)
305 2j37_W Signal recognition part 96.2 0.0024 8.2E-08 56.6 3.3 32 2-33 102-139 (504)
306 2zej_A Dardarin, leucine-rich 96.2 0.0027 9.1E-08 47.7 3.2 21 3-23 4-24 (184)
307 1ypw_A Transitional endoplasmi 96.2 0.0019 6.5E-08 60.3 2.8 28 3-30 240-268 (806)
308 1kao_A RAP2A; GTP-binding prot 96.2 0.0033 1.1E-07 45.5 3.6 22 2-23 4-25 (167)
309 2rcn_A Probable GTPase ENGC; Y 96.2 0.0026 8.8E-08 54.0 3.3 21 3-23 217-237 (358)
310 3hu3_A Transitional endoplasmi 96.2 0.0023 8E-08 56.4 3.2 34 3-36 240-276 (489)
311 2bjv_A PSP operon transcriptio 96.2 0.0025 8.5E-08 50.9 3.0 21 3-23 31-51 (265)
312 4dzz_A Plasmid partitioning pr 96.2 0.0037 1.3E-07 47.5 3.9 32 1-32 1-39 (206)
313 3b5x_A Lipid A export ATP-bind 96.2 0.0024 8.1E-08 57.3 3.2 21 3-23 371-391 (582)
314 3q85_A GTP-binding protein REM 96.2 0.0028 9.7E-08 46.3 3.0 22 2-23 3-24 (169)
315 3b60_A Lipid A export ATP-bind 96.2 0.0022 7.5E-08 57.5 2.9 21 3-23 371-391 (582)
316 3j16_B RLI1P; ribosome recycli 96.2 0.0026 8.9E-08 57.6 3.3 21 3-23 380-400 (608)
317 3q72_A GTP-binding protein RAD 96.2 0.0029 1E-07 46.1 3.1 22 2-23 3-24 (166)
318 2qby_B CDC6 homolog 3, cell di 96.2 0.0022 7.5E-08 53.6 2.6 21 3-23 47-67 (384)
319 2v1u_A Cell division control p 96.2 0.0015 5.2E-08 54.4 1.6 21 3-23 46-66 (387)
320 2erx_A GTP-binding protein DI- 96.2 0.0037 1.3E-07 45.5 3.6 22 2-23 4-25 (172)
321 2z4s_A Chromosomal replication 96.2 0.0043 1.5E-07 53.8 4.6 35 3-37 132-174 (440)
322 3dm5_A SRP54, signal recogniti 96.2 0.0029 9.8E-08 55.2 3.3 32 2-33 101-138 (443)
323 2dby_A GTP-binding protein; GD 96.2 0.0022 7.5E-08 54.6 2.5 23 1-23 1-23 (368)
324 2ged_A SR-beta, signal recogni 96.1 0.0034 1.2E-07 47.1 3.4 23 2-24 49-71 (193)
325 3cf2_A TER ATPase, transitiona 96.1 0.0034 1.2E-07 58.5 4.0 28 4-31 514-542 (806)
326 2p67_A LAO/AO transport system 96.1 0.0031 1.1E-07 52.8 3.4 21 2-22 57-77 (341)
327 2obl_A ESCN; ATPase, hydrolase 96.1 0.0029 9.9E-08 53.3 3.2 21 3-23 73-93 (347)
328 1g16_A RAS-related protein SEC 96.1 0.0032 1.1E-07 45.9 3.1 22 2-23 4-25 (170)
329 1u0l_A Probable GTPase ENGC; p 96.1 0.0031 1E-07 51.9 3.2 21 3-23 171-191 (301)
330 1ky3_A GTP-binding protein YPT 96.1 0.0038 1.3E-07 46.0 3.4 22 2-23 9-30 (182)
331 3end_A Light-independent proto 96.1 0.0049 1.7E-07 50.4 4.3 33 1-33 41-79 (307)
332 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0038 1.3E-07 45.9 3.4 22 2-23 8-29 (177)
333 1z08_A RAS-related protein RAB 96.1 0.0042 1.4E-07 45.3 3.6 22 2-23 7-28 (170)
334 1c1y_A RAS-related protein RAP 96.1 0.004 1.4E-07 45.2 3.4 22 2-23 4-25 (167)
335 1z0f_A RAB14, member RAS oncog 96.1 0.0037 1.3E-07 45.9 3.2 22 2-23 16-37 (179)
336 1z0j_A RAB-22, RAS-related pro 96.1 0.0043 1.5E-07 45.1 3.6 22 2-23 7-28 (170)
337 1ek0_A Protein (GTP-binding pr 96.1 0.0041 1.4E-07 45.2 3.4 21 3-23 5-25 (170)
338 3lxx_A GTPase IMAP family memb 96.1 0.0038 1.3E-07 49.1 3.4 22 2-23 30-51 (239)
339 1e2k_A Thymidine kinase; trans 96.1 0.0025 8.4E-08 53.5 2.4 22 2-23 5-26 (331)
340 3bc1_A RAS-related protein RAB 96.1 0.0038 1.3E-07 46.5 3.2 22 2-23 12-33 (195)
341 3tw8_B RAS-related protein RAB 96.1 0.0041 1.4E-07 45.8 3.4 22 2-23 10-31 (181)
342 2nzj_A GTP-binding protein REM 96.1 0.0041 1.4E-07 45.6 3.4 22 2-23 5-26 (175)
343 3pxg_A Negative regulator of g 96.0 0.0028 9.6E-08 55.4 2.7 31 3-33 203-244 (468)
344 2fn4_A P23, RAS-related protei 96.0 0.0043 1.5E-07 45.6 3.4 22 2-23 10-31 (181)
345 1svi_A GTP-binding protein YSX 96.0 0.0038 1.3E-07 46.8 3.2 23 2-24 24-46 (195)
346 2b8t_A Thymidine kinase; deoxy 96.0 0.0044 1.5E-07 49.1 3.6 21 2-22 13-33 (223)
347 1nrj_B SR-beta, signal recogni 96.0 0.0041 1.4E-07 47.7 3.4 22 2-23 13-34 (218)
348 3pqc_A Probable GTP-binding pr 96.0 0.0035 1.2E-07 46.8 2.9 22 2-23 24-45 (195)
349 1sxj_C Activator 1 40 kDa subu 96.0 0.0035 1.2E-07 52.1 3.1 20 4-23 49-68 (340)
350 1sxj_E Activator 1 40 kDa subu 96.0 0.0029 9.9E-08 52.5 2.6 20 4-23 39-58 (354)
351 3u61_B DNA polymerase accessor 96.0 0.0029 9.9E-08 52.0 2.5 29 3-31 50-79 (324)
352 2yl4_A ATP-binding cassette SU 96.0 0.0023 7.8E-08 57.6 2.0 21 3-23 372-392 (595)
353 1upt_A ARL1, ADP-ribosylation 96.0 0.0047 1.6E-07 45.1 3.4 22 2-23 8-29 (171)
354 1ls1_A Signal recognition part 96.0 0.0044 1.5E-07 50.9 3.5 32 2-33 99-136 (295)
355 3con_A GTPase NRAS; structural 96.0 0.0051 1.7E-07 46.0 3.6 22 2-23 22-43 (190)
356 1r2q_A RAS-related protein RAB 96.0 0.0054 1.8E-07 44.5 3.6 22 2-23 7-28 (170)
357 2v3c_C SRP54, signal recogniti 96.0 0.0022 7.5E-08 55.7 1.6 32 2-33 100-137 (432)
358 1tf7_A KAIC; homohexamer, hexa 96.0 0.0036 1.2E-07 55.4 3.0 19 3-21 41-59 (525)
359 2xxa_A Signal recognition part 96.0 0.0041 1.4E-07 54.0 3.4 32 2-33 101-139 (433)
360 2dpy_A FLII, flagellum-specifi 96.0 0.0038 1.3E-07 54.2 3.2 21 3-23 159-179 (438)
361 1j8m_F SRP54, signal recogniti 95.9 0.0033 1.1E-07 51.8 2.6 32 2-33 99-136 (297)
362 2lkc_A Translation initiation 95.9 0.006 2E-07 44.9 3.8 22 2-23 9-30 (178)
363 2hxs_A RAB-26, RAS-related pro 95.9 0.0056 1.9E-07 45.1 3.7 22 2-23 7-28 (178)
364 3uk6_A RUVB-like 2; hexameric 95.9 0.0038 1.3E-07 52.0 3.0 24 3-26 72-96 (368)
365 3clv_A RAB5 protein, putative; 95.9 0.0053 1.8E-07 45.9 3.6 22 2-23 8-29 (208)
366 3kjh_A CO dehydrogenase/acetyl 95.9 0.0047 1.6E-07 48.3 3.3 32 1-33 1-38 (254)
367 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0051 1.7E-07 45.7 3.4 22 2-23 5-26 (189)
368 1t9h_A YLOQ, probable GTPase E 95.9 0.0021 7.2E-08 53.4 1.3 21 3-23 175-195 (307)
369 3qf4_B Uncharacterized ABC tra 95.9 0.0027 9.3E-08 57.2 2.2 21 3-23 383-403 (598)
370 2y8e_A RAB-protein 6, GH09086P 95.9 0.005 1.7E-07 45.2 3.3 22 2-23 15-36 (179)
371 2gf9_A RAS-related protein RAB 95.9 0.0048 1.6E-07 46.2 3.2 22 2-23 23-44 (189)
372 2a9k_A RAS-related protein RAL 95.9 0.0057 1.9E-07 45.2 3.6 22 2-23 19-40 (187)
373 4a82_A Cystic fibrosis transme 95.9 0.0024 8.2E-08 57.3 1.6 21 3-23 369-389 (578)
374 2xtp_A GTPase IMAP family memb 95.9 0.0052 1.8E-07 48.9 3.4 22 2-23 23-44 (260)
375 3dz8_A RAS-related protein RAB 95.9 0.006 2.1E-07 45.8 3.6 22 2-23 24-45 (191)
376 1sxj_D Activator 1 41 kDa subu 95.8 0.0046 1.6E-07 51.0 3.1 20 4-23 61-80 (353)
377 1zbd_A Rabphilin-3A; G protein 95.8 0.0053 1.8E-07 46.5 3.2 22 2-23 9-30 (203)
378 2bme_A RAB4A, RAS-related prot 95.8 0.0072 2.5E-07 44.8 3.9 22 2-23 11-32 (186)
379 3szr_A Interferon-induced GTP- 95.8 0.003 1E-07 57.1 2.1 21 3-23 47-67 (608)
380 2g6b_A RAS-related protein RAB 95.8 0.0064 2.2E-07 44.8 3.6 22 2-23 11-32 (180)
381 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.005 1.7E-07 52.1 3.3 20 3-22 25-44 (365)
382 2iw3_A Elongation factor 3A; a 95.8 0.0047 1.6E-07 58.8 3.3 21 3-23 463-483 (986)
383 1of1_A Thymidine kinase; trans 95.8 0.0048 1.6E-07 52.7 3.1 22 2-23 50-71 (376)
384 3qks_A DNA double-strand break 95.8 0.0057 1.9E-07 47.4 3.3 21 3-23 25-45 (203)
385 2oil_A CATX-8, RAS-related pro 95.8 0.0082 2.8E-07 45.0 4.1 22 2-23 26-47 (193)
386 4aby_A DNA repair protein RECN 95.8 0.0022 7.5E-08 54.6 0.9 21 3-23 62-82 (415)
387 1r8s_A ADP-ribosylation factor 95.8 0.0059 2E-07 44.3 3.2 21 3-23 2-22 (164)
388 3kkq_A RAS-related protein M-R 95.8 0.0085 2.9E-07 44.4 4.1 21 3-23 20-40 (183)
389 1xx6_A Thymidine kinase; NESG, 95.8 0.0067 2.3E-07 46.8 3.6 28 2-29 9-40 (191)
390 1zcb_A G alpha I/13; GTP-bindi 95.8 0.0063 2.2E-07 51.6 3.7 22 1-22 33-54 (362)
391 3t1o_A Gliding protein MGLA; G 95.8 0.007 2.4E-07 45.1 3.6 21 3-23 16-36 (198)
392 2efe_B Small GTP-binding prote 95.8 0.0066 2.2E-07 44.8 3.4 21 3-23 14-34 (181)
393 3lda_A DNA repair protein RAD5 95.8 0.0053 1.8E-07 52.8 3.2 20 3-22 180-199 (400)
394 3qf4_A ABC transporter, ATP-bi 95.8 0.0035 1.2E-07 56.4 2.1 21 3-23 371-391 (587)
395 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0083 2.8E-07 44.8 4.0 22 2-23 8-29 (184)
396 2bov_A RAla, RAS-related prote 95.7 0.0065 2.2E-07 45.9 3.4 22 2-23 15-36 (206)
397 1vg8_A RAS-related protein RAB 95.7 0.007 2.4E-07 45.8 3.6 22 2-23 9-30 (207)
398 2qnr_A Septin-2, protein NEDD5 95.7 0.0053 1.8E-07 50.5 3.0 21 3-23 20-40 (301)
399 1moz_A ARL1, ADP-ribosylation 95.7 0.0045 1.5E-07 45.9 2.3 22 2-23 19-40 (183)
400 1ewq_A DNA mismatch repair pro 95.7 0.0053 1.8E-07 57.0 3.3 20 3-22 578-597 (765)
401 3b1v_A Ferrous iron uptake tra 95.7 0.0066 2.3E-07 49.3 3.5 22 2-23 4-25 (272)
402 3t5g_A GTP-binding protein RHE 95.7 0.0066 2.2E-07 44.9 3.3 22 2-23 7-28 (181)
403 1ega_A Protein (GTP-binding pr 95.7 0.0057 2E-07 50.3 3.2 21 3-23 10-30 (301)
404 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0075 2.6E-07 44.6 3.6 22 2-23 6-27 (186)
405 1m2o_B GTP-binding protein SAR 95.7 0.0065 2.2E-07 45.9 3.2 21 3-23 25-45 (190)
406 3lxw_A GTPase IMAP family memb 95.7 0.0067 2.3E-07 48.3 3.4 22 2-23 22-43 (247)
407 2fg5_A RAB-22B, RAS-related pr 95.7 0.0073 2.5E-07 45.5 3.4 21 3-23 25-45 (192)
408 1ksh_A ARF-like protein 2; sma 95.7 0.0074 2.5E-07 44.9 3.4 22 2-23 19-40 (186)
409 1fzq_A ADP-ribosylation factor 95.7 0.007 2.4E-07 45.2 3.3 22 2-23 17-38 (181)
410 1wb9_A DNA mismatch repair pro 95.7 0.0058 2E-07 57.0 3.3 20 3-22 609-628 (800)
411 3pxi_A Negative regulator of g 95.7 0.0048 1.6E-07 57.0 2.7 31 3-33 203-244 (758)
412 3tkl_A RAS-related protein RAB 95.7 0.0075 2.6E-07 45.1 3.4 22 2-23 17-38 (196)
413 1osn_A Thymidine kinase, VZV-T 95.6 0.0057 2E-07 51.5 2.9 24 2-25 13-38 (341)
414 1z06_A RAS-related protein RAB 95.6 0.0084 2.9E-07 44.9 3.6 22 2-23 21-42 (189)
415 2iw3_A Elongation factor 3A; a 95.6 0.0038 1.3E-07 59.4 1.9 21 3-23 701-721 (986)
416 2p5s_A RAS and EF-hand domain 95.6 0.009 3.1E-07 45.2 3.7 22 2-23 29-50 (199)
417 3oes_A GTPase rhebl1; small GT 95.6 0.008 2.7E-07 45.6 3.5 22 2-23 25-46 (201)
418 2qag_C Septin-7; cell cycle, c 95.6 0.0069 2.4E-07 52.4 3.4 21 3-23 33-53 (418)
419 2gf0_A GTP-binding protein DI- 95.6 0.0082 2.8E-07 45.0 3.4 22 2-23 9-30 (199)
420 3ihw_A Centg3; RAS, centaurin, 95.6 0.009 3.1E-07 44.9 3.6 22 2-23 21-42 (184)
421 1zd9_A ADP-ribosylation factor 95.6 0.0091 3.1E-07 44.8 3.6 22 2-23 23-44 (188)
422 1qhl_A Protein (cell division 95.6 0.0017 5.8E-08 51.6 -0.5 20 4-23 30-49 (227)
423 1g8p_A Magnesium-chelatase 38 95.6 0.0042 1.4E-07 51.3 1.8 22 4-25 48-70 (350)
424 2qu8_A Putative nucleolar GTP- 95.5 0.0087 3E-07 46.5 3.5 23 2-24 30-52 (228)
425 3hr8_A Protein RECA; alpha and 95.5 0.0073 2.5E-07 51.1 3.2 21 2-22 62-82 (356)
426 2atv_A RERG, RAS-like estrogen 95.5 0.0094 3.2E-07 44.9 3.6 22 2-23 29-50 (196)
427 1x3s_A RAS-related protein RAB 95.5 0.012 4.1E-07 43.9 4.1 22 2-23 16-37 (195)
428 1zj6_A ADP-ribosylation factor 95.5 0.0093 3.2E-07 44.5 3.5 22 2-23 17-38 (187)
429 1tf7_A KAIC; homohexamer, hexa 95.5 0.007 2.4E-07 53.5 3.2 20 3-22 283-302 (525)
430 1jwy_B Dynamin A GTPase domain 95.5 0.0073 2.5E-07 49.3 3.0 22 2-23 25-46 (315)
431 2il1_A RAB12; G-protein, GDP, 95.5 0.0092 3.2E-07 45.0 3.4 21 3-23 28-48 (192)
432 3bwd_D RAC-like GTP-binding pr 95.5 0.012 4E-07 43.4 3.9 22 2-23 9-30 (182)
433 2zts_A Putative uncharacterize 95.5 0.0086 2.9E-07 46.7 3.3 20 3-22 32-51 (251)
434 2a5j_A RAS-related protein RAB 95.5 0.01 3.4E-07 44.6 3.6 22 2-23 22-43 (191)
435 3cbq_A GTP-binding protein REM 95.5 0.0075 2.6E-07 45.8 2.9 21 2-22 24-44 (195)
436 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0095 3.2E-07 45.2 3.5 22 2-23 9-30 (206)
437 1ni3_A YCHF GTPase, YCHF GTP-b 95.5 0.0076 2.6E-07 51.7 3.2 21 3-23 22-42 (392)
438 3iev_A GTP-binding protein ERA 95.5 0.011 3.6E-07 48.8 3.9 21 3-23 12-32 (308)
439 2iwr_A Centaurin gamma 1; ANK 95.5 0.01 3.6E-07 43.7 3.6 23 2-24 8-30 (178)
440 4bas_A ADP-ribosylation factor 95.5 0.0095 3.2E-07 44.7 3.4 22 2-23 18-39 (199)
441 2fv8_A H6, RHO-related GTP-bin 95.5 0.0096 3.3E-07 45.4 3.4 22 2-23 26-47 (207)
442 2h17_A ADP-ribosylation factor 95.5 0.0091 3.1E-07 44.4 3.2 22 2-23 22-43 (181)
443 1f6b_A SAR1; gtpases, N-termin 95.5 0.0071 2.4E-07 46.0 2.6 22 2-23 26-47 (198)
444 3ux8_A Excinuclease ABC, A sub 95.5 0.0043 1.5E-07 56.5 1.6 19 3-21 350-368 (670)
445 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0097 3.3E-07 49.8 3.6 29 3-31 125-156 (331)
446 2ew1_A RAS-related protein RAB 95.4 0.01 3.4E-07 45.5 3.5 22 2-23 27-48 (201)
447 1iqp_A RFCS; clamp loader, ext 95.4 0.009 3.1E-07 48.5 3.4 21 3-23 48-68 (327)
448 3cph_A RAS-related protein SEC 95.4 0.0099 3.4E-07 45.2 3.4 22 2-23 21-42 (213)
449 2o52_A RAS-related protein RAB 95.4 0.0095 3.2E-07 45.3 3.3 22 2-23 26-47 (200)
450 4dhe_A Probable GTP-binding pr 95.4 0.0055 1.9E-07 47.1 1.9 22 2-23 30-51 (223)
451 1e69_A Chromosome segregation 95.4 0.0063 2.1E-07 50.4 2.3 21 3-23 26-46 (322)
452 3reg_A RHO-like small GTPase; 95.4 0.011 3.9E-07 44.3 3.6 21 3-23 25-45 (194)
453 3i8s_A Ferrous iron transport 95.4 0.0098 3.4E-07 48.1 3.4 22 2-23 4-25 (274)
454 2gco_A H9, RHO-related GTP-bin 95.4 0.011 3.7E-07 44.9 3.5 22 2-23 26-47 (201)
455 3c5c_A RAS-like protein 12; GD 95.4 0.012 3.9E-07 44.3 3.6 22 2-23 22-43 (187)
456 2zr9_A Protein RECA, recombina 95.4 0.0089 3.1E-07 50.3 3.2 30 3-32 63-98 (349)
457 2b6h_A ADP-ribosylation factor 95.4 0.01 3.5E-07 44.8 3.3 22 2-23 30-51 (192)
458 1gwn_A RHO-related GTP-binding 95.3 0.014 4.7E-07 44.8 4.0 21 3-23 30-50 (205)
459 1jr3_A DNA polymerase III subu 95.3 0.0098 3.3E-07 49.4 3.3 21 3-23 40-60 (373)
460 2qtf_A Protein HFLX, GTP-bindi 95.3 0.0096 3.3E-07 50.4 3.3 22 3-24 181-202 (364)
461 2q3h_A RAS homolog gene family 95.3 0.012 4.1E-07 44.4 3.5 22 2-23 21-42 (201)
462 3thx_A DNA mismatch repair pro 95.3 0.0091 3.1E-07 56.6 3.3 19 3-21 664-682 (934)
463 3thx_B DNA mismatch repair pro 95.3 0.0074 2.5E-07 57.1 2.7 20 3-22 675-694 (918)
464 1ypw_A Transitional endoplasmi 95.3 0.0035 1.2E-07 58.4 0.5 28 3-30 513-541 (806)
465 2f7s_A C25KG, RAS-related prot 95.3 0.012 4.1E-07 45.0 3.5 22 2-23 26-47 (217)
466 2h57_A ADP-ribosylation factor 95.3 0.0091 3.1E-07 44.7 2.7 22 2-23 22-43 (190)
467 2fh5_B SR-beta, signal recogni 95.3 0.015 5E-07 44.4 3.9 22 2-23 8-29 (214)
468 2chq_A Replication factor C sm 95.3 0.01 3.5E-07 48.0 3.1 21 3-23 40-60 (319)
469 3qkt_A DNA double-strand break 95.3 0.01 3.4E-07 49.5 3.2 20 3-22 25-44 (339)
470 2cjw_A GTP-binding protein GEM 95.3 0.011 3.6E-07 44.9 3.0 22 2-23 7-28 (192)
471 1r6b_X CLPA protein; AAA+, N-t 95.2 0.0075 2.6E-07 55.5 2.5 28 3-30 490-518 (758)
472 2fu5_C RAS-related protein RAB 95.2 0.0071 2.4E-07 44.8 2.0 22 2-23 9-30 (183)
473 3a1s_A Iron(II) transport prot 95.2 0.012 4.1E-07 47.2 3.4 22 2-23 6-27 (258)
474 3te6_A Regulatory protein SIR3 95.2 0.009 3.1E-07 49.8 2.7 21 3-23 47-67 (318)
475 1jal_A YCHF protein; nucleotid 95.2 0.011 3.9E-07 50.1 3.4 22 2-23 3-24 (363)
476 4gzl_A RAS-related C3 botulinu 95.2 0.016 5.5E-07 44.1 4.0 22 2-23 31-52 (204)
477 1w1w_A Structural maintenance 95.2 0.011 3.8E-07 50.8 3.3 21 3-23 28-48 (430)
478 2j1l_A RHO-related GTP-binding 95.2 0.013 4.3E-07 45.1 3.4 21 3-23 36-56 (214)
479 3k1j_A LON protease, ATP-depen 95.2 0.0099 3.4E-07 53.5 3.1 21 3-23 62-82 (604)
480 2fna_A Conserved hypothetical 95.2 0.012 4.1E-07 48.1 3.4 30 3-32 32-64 (357)
481 2aka_B Dynamin-1; fusion prote 95.2 0.011 3.6E-07 47.8 3.0 22 2-23 27-48 (299)
482 2atx_A Small GTP binding prote 95.2 0.014 4.8E-07 43.8 3.4 22 2-23 19-40 (194)
483 3t5d_A Septin-7; GTP-binding p 95.2 0.012 4.2E-07 47.4 3.2 21 3-23 10-30 (274)
484 2o5v_A DNA replication and rep 95.1 0.012 4.1E-07 49.8 3.3 20 3-22 28-47 (359)
485 3ux8_A Excinuclease ABC, A sub 95.1 0.0084 2.9E-07 54.6 2.5 16 3-18 46-61 (670)
486 3t34_A Dynamin-related protein 95.1 0.011 3.8E-07 49.5 3.1 21 3-23 36-56 (360)
487 1qvr_A CLPB protein; coiled co 95.1 0.0068 2.3E-07 56.8 1.9 21 3-23 193-213 (854)
488 3bfv_A CAPA1, CAPB2, membrane 95.1 0.017 5.8E-07 46.7 4.0 33 1-33 82-121 (271)
489 2hup_A RAS-related protein RAB 95.1 0.015 5E-07 44.3 3.4 22 2-23 30-51 (201)
490 1wf3_A GTP-binding protein; GT 95.1 0.017 5.7E-07 47.5 3.9 21 3-23 9-29 (301)
491 1sxj_B Activator 1 37 kDa subu 95.1 0.013 4.3E-07 47.6 3.1 20 4-23 45-64 (323)
492 1v5w_A DMC1, meiotic recombina 95.1 0.013 4.4E-07 49.0 3.3 22 2-23 123-144 (343)
493 1mky_A Probable GTP-binding pr 95.1 0.013 4.5E-07 50.6 3.4 20 2-21 181-200 (439)
494 3e2i_A Thymidine kinase; Zn-bi 95.1 0.015 5.2E-07 45.9 3.4 21 2-22 29-50 (219)
495 2z43_A DNA repair and recombin 95.0 0.013 4.5E-07 48.5 3.2 20 3-22 109-128 (324)
496 2x77_A ADP-ribosylation factor 95.0 0.01 3.5E-07 44.3 2.3 22 2-23 23-44 (189)
497 2ffh_A Protein (FFH); SRP54, s 95.0 0.015 5E-07 50.4 3.5 31 2-32 99-135 (425)
498 3e1s_A Exodeoxyribonuclease V, 95.0 0.013 4.5E-07 52.5 3.3 28 3-30 206-237 (574)
499 3bh0_A DNAB-like replicative h 95.0 0.014 4.9E-07 48.2 3.3 20 3-22 70-89 (315)
500 2r8r_A Sensor protein; KDPD, P 95.0 0.023 7.8E-07 45.1 4.3 32 2-33 7-44 (228)
No 1
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=100.00 E-value=2.5e-40 Score=264.06 Aligned_cols=164 Identities=30% Similarity=0.416 Sum_probs=150.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|.-|||||+||||||||+++|+++|+++||+|.++|++++++++.+++|++.||++++.++|.+||++|++++|+||+.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHH------------HHHH-------------------hcchHhhhcCCCCHHHHHHHHHhCC
Q 029212 81 QLLNGLLAPYISLGIFMEVL------------KLWI-------------------KGCKRLMARDRTSEEDARNRINAQM 129 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~------------~~~~-------------------~~~~Rl~~R~~~s~e~i~~ri~~q~ 129 (197)
+.||+++||.|+..+...+. .+++ .+.+|+++|+|.|.+++.+|+.+|+
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~~Q~ 168 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQA 168 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHHcC
Confidence 99999999999988765542 1222 2345999999999999999999999
Q ss_pred CcccccCCCcEEEEcC-CCHHHHHHHHHHHHHHHhc
Q 029212 130 PLDIKRNNADIVINNT-GTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 130 ~~~~~~~~aD~vI~N~-~~~~~l~~~i~~ii~~l~~ 164 (197)
+.+++++.||+||+|+ +++++++++|+++++.+..
T Consensus 169 ~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 169 TREARLAAADDVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp CHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9988999999999999 9999999999999988754
No 2
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.96 E-value=9.6e-29 Score=194.99 Aligned_cols=164 Identities=36% Similarity=0.489 Sum_probs=131.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|+|+|++||||||+++.|+++|++++|+|.+.+++..+++..++++++.||+.++..++.++|..++..+|.+++.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHCCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 46899999999999999999999999999999999998888888899999999999988778899999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHH------------H------------------HHhcchHhhhcCCCCHHHHHHHHHhCCC
Q 029212 81 QLLNGLLAPYISLGIFMEVLK------------L------------------WIKGCKRLMARDRTSEEDARNRINAQMP 130 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~------------~------------------~~~~~~Rl~~R~~~s~e~i~~ri~~q~~ 130 (197)
..++.++||.++..+...+.. . .+...+|+++|++.+.+++.+|+..|.+
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r~~~q~~ 161 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVS 161 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHHHHHSCC
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 999999999988765433321 0 1123459988988999999999999988
Q ss_pred cccccCCCcEEEEcCCCHH----HHHHHHHHHHHHHhc
Q 029212 131 LDIKRNNADIVINNTGTLD----DLNEQVRKVLFEIKR 164 (197)
Q Consensus 131 ~~~~~~~aD~vI~N~~~~~----~l~~~i~~ii~~l~~ 164 (197)
..++++.||++|+|+++++ ++.+++.++++.+..
T Consensus 162 ~~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 162 QQERLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHHHCSEEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCCEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7767778999999999999 999999998876553
No 3
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.96 E-value=1.5e-28 Score=193.59 Aligned_cols=155 Identities=33% Similarity=0.457 Sum_probs=126.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC-CCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~-G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
.+|+|||+|||||||+++.|++. |+++||+|.+.++++++ .++++++.||++++. +|.+||+.|++.+|++++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 47999999999999999999984 99999999999999876 789999999999998 89999999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHH-----------HHHhcchHhhhcC-----CCCHHHHHHH-HHhCCCc--ccccCCCcEE
Q 029212 81 QLLNGLLAPYISLGIFMEVLK-----------LWIKGCKRLMARD-----RTSEEDARNR-INAQMPL--DIKRNNADIV 141 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~-----------~~~~~~~Rl~~R~-----~~s~e~i~~r-i~~q~~~--~~~~~~aD~v 141 (197)
+.++.++||.++..+...+.. +++..+... -+ ..+.+...+| +.+|++. +++++.||++
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~~~~~--~d~vi~v~a~~e~r~~Rli~~q~~~~~~~~~~~AD~v 166 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMGLDQL--CDHVITVVASRETILKRNREADRRLKFQEDIVPQGIV 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTTGGGG--CSEEEEEECCHHHHHHHCSSHHHHHTTCTTCCCCSEE
T ss_pred HHHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecChHHh--CCEEEEEECCHHHHHHHHHHhcCCchhhhHHhcCCEE
Confidence 999999999998776544432 111111110 11 1355554445 5667776 7778899999
Q ss_pred EEcCCCHHHHHHHHHHHHHHH
Q 029212 142 INNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 142 I~N~~~~~~l~~~i~~ii~~l 162 (197)
|+|+++++++.+++.++++.+
T Consensus 167 I~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 167 VANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp EECSSCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999877
No 4
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=192.36 Aligned_cols=165 Identities=27% Similarity=0.423 Sum_probs=141.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|+|+|++||||||+++.|+++|+++||+|.+.++++.++...+.++.+.||..++.++|.+||..++..+|.+++.+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~ 154 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQM 154 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHH
Confidence 56899999999999999999999999999999999999999888899999999999988788899999999999999999
Q ss_pred HHHhhhhchhhHHHHHHHHHHH-------------------H--------------HhcchHhhhcCCCCHHHHHHHHHh
Q 029212 81 QLLNGLLAPYISLGIFMEVLKL-------------------W--------------IKGCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~~-------------------~--------------~~~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
+.++.++||.++..+...+... + +...+|+++|+|.+.+++.+++..
T Consensus 155 ~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ri~~ 234 (281)
T 2f6r_A 155 KILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQS 234 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999998876543322110 0 123458888888999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 128 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 128 q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
|++..+++..||++|+|+++++++.++|.++++.+...
T Consensus 235 q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~ 272 (281)
T 2f6r_A 235 QMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKR 272 (281)
T ss_dssp SCCHHHHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCChHhhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 98776666789999999999999999999999877643
No 5
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.94 E-value=1e-26 Score=182.96 Aligned_cols=163 Identities=36% Similarity=0.522 Sum_probs=137.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|+|+|++||||||+++.|+++|++++++|++.++++.+++..++++.+.+|+.+++.++.++|..|++.+|.+++..
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHTTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHHCCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999998887778899999999998887667899999999999999998
Q ss_pred HHHhhhhchhhHHHHHHHHHH-------------------------------HHHhcchHhhhcCCCCHHHHHHHHHhCC
Q 029212 81 QLLNGLLAPYISLGIFMEVLK-------------------------------LWIKGCKRLMARDRTSEEDARNRINAQM 129 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~-------------------------------~~~~~~~Rl~~R~~~s~e~i~~ri~~q~ 129 (197)
+.++.+.||.+...+...+.. ..+...+|+.+| |.+.+++.+++..|.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-~~~~~~~~~~~~~~~ 159 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-GMSEEDFERRWKKQM 159 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-CCCHHHHHHHHTTSC
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-CCCHHHHHHHHHhCC
Confidence 899988899876544322210 112234588888 889999999999998
Q ss_pred CcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 130 PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 130 ~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
+..++...||++|+|+++++++.++|.++++.+..
T Consensus 160 ~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~ 194 (204)
T 2if2_A 160 PIEEKVKYADYVIDNSGSIEETYKQVKKVYEELTR 194 (204)
T ss_dssp CHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTCC
T ss_pred ChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHhc
Confidence 86666778999999999999999999998876554
No 6
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.93 E-value=1.1e-25 Score=178.99 Aligned_cols=163 Identities=33% Similarity=0.487 Sum_probs=137.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~~ 81 (197)
++|+|+|++||||||+++.|+++|++++|+|.+.++++++++..+.++++.+|+..+..++.+++..+++.+|.++..+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~~~ 84 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKN 84 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHHHH
Confidence 47999999999999999999999999999999999998888888899999999999886677999999999999999888
Q ss_pred HHhhhhchhhHHHHHHHHHH------------------------------HHHhcchHhhhcCCCCHHHHHHHHHhCCCc
Q 029212 82 LLNGLLAPYISLGIFMEVLK------------------------------LWIKGCKRLMARDRTSEEDARNRINAQMPL 131 (197)
Q Consensus 82 ~l~~i~~p~i~~~~~~~i~~------------------------------~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~ 131 (197)
.++.++||.+...+...+.. ..+...+|+.+|++.+.+++.+++..|.+.
T Consensus 85 ~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~ 164 (218)
T 1vht_A 85 WLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATR 164 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHSCCH
T ss_pred HHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCh
Confidence 99998999886544332221 012235598888888999999999999887
Q ss_pred ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 132 DIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 132 ~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
.++...||++|+|+++++++.++|.++++.+..
T Consensus 165 ~~~~~~ad~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 165 EARLAVADDVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHCSEEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 656677999999999999999999998876643
No 7
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.90 E-value=1.3e-23 Score=164.27 Aligned_cols=158 Identities=34% Similarity=0.543 Sum_probs=125.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
|++|+|+|++||||||+++.|++.|+++||+|.+.++.. ++.. +++.+.| ++++. ++.+++..+++.+|.+++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~g~~~id~d~~~~~~~-~~~~--~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARAR-ENKE--EELKRLF-PEAVV-GGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHTTCCEEEHHHHHHHHH-HHTH--HHHHHHC-GGGEE-TTEECHHHHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHCCCEEEcccHHHHHhc-CChH--HHHHHHH-HHHHh-CCCcCHHHHHHHHhCCHHHH
Confidence 468999999999999999999988999999999998877 3332 6788888 78887 78899999999999999998
Q ss_pred HHHhhhhchhhHHHHHHHHHH------------H------------------HHhcchHhhhcCCCCHHHHHHHHHhCCC
Q 029212 81 QLLNGLLAPYISLGIFMEVLK------------L------------------WIKGCKRLMARDRTSEEDARNRINAQMP 130 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~~~~i~~------------~------------------~~~~~~Rl~~R~~~s~e~i~~ri~~q~~ 130 (197)
+.++.+.||.+.......... + .+...+|+.+|++.+.+++.+++..+.+
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~~~~ 162 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMP 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTSCC
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHCCC
Confidence 888888898875211111100 0 1223458888888888899999999887
Q ss_pred cccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 131 LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 131 ~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
..++...||++|+|+++++++.++|.++++.+.
T Consensus 163 ~~~~~~~ad~vId~~~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 163 EEEKRKRATWVLENTGSLEDLERALKAVLAELT 195 (203)
T ss_dssp HHHHHHHCSEEECCSSHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 655556799999999989999999998887543
No 8
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.74 E-value=5.5e-18 Score=128.37 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=96.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHHhccCC-------chHHHHHHHhcccccCCCCccchHHH-----
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGT-------GGWKKVVAAFGEDILLPNGEVDRSKL----- 69 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l~~~~~-------~~~~~i~~~~G~~~~~~~~~~dr~~l----- 69 (197)
++|+|+|++||||||+++.|+++|++++++|++.++.+...+ .....+++.+|+..+.. .....+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR---LCVEELGTSNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH---HHHHHHCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH---HHHHHHHhcCC
Confidence 479999999999999999994499999999888887654321 12333444455443321 001111
Q ss_pred ----HhHhcCChHHHHHHhhhh-chhhHHHHHHHHHHHHHhcchHhhhcCC----CCHHHHHHHHHh--CCCcccccCCC
Q 029212 70 ----GQIVFSDSSKRQLLNGLL-APYISLGIFMEVLKLWIKGCKRLMARDR----TSEEDARNRINA--QMPLDIKRNNA 138 (197)
Q Consensus 70 ----~~~vf~~~~~~~~l~~i~-~p~i~~~~~~~i~~~~~~~~~Rl~~R~~----~s~e~i~~ri~~--q~~~~~~~~~a 138 (197)
.+. +.++..+..+.... .|...- .+....+...+|+.+|++ .+.+++.+++.. +.+..++...|
T Consensus 79 ~~vi~dg-~~~~~~~~~l~~~~~~~~~~i----~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~a 153 (179)
T 3lw7_A 79 DLVVFDG-VRSLAEVEEFKRLLGDSVYIV----AVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMA 153 (179)
T ss_dssp SCEEEEC-CCCHHHHHHHHHHHCSCEEEE----EEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred CeEEEeC-CCCHHHHHHHHHHhCCCcEEE----EEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhC
Confidence 111 12333333333321 110000 011234556779988865 678888888744 45555677889
Q ss_pred cEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 139 DIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 139 D~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
|++|+|+++++++.+++.++++.+.
T Consensus 154 d~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 154 DYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988753
No 9
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.72 E-value=4.4e-19 Score=135.20 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=89.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChH-
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS- 78 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~- 78 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+.++.. +..++++++.+|+..++ .+++..+..++-..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~---g~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~~~~~ 80 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV---GLSVREIFEELGEDNFR---MFEKNLIDELKTLKTPH 80 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH---TSCHHHHHHHTCHHHHH---HHHHHHHHHHHTCSSCC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh---CCCHHHHHHHhCHHHHH---HHHHHHHHHHHhcCCCE
Confidence 78999999999999999999998 8999999999998875 33567888888887664 2344444433210000
Q ss_pred HHHHHhhhhchhhHHHHHH-----HHHHHHHhcchHhhhc-----CCCC-HHHHHHHHHhCCCcccccCCCcEEEEcCCC
Q 029212 79 KRQLLNGLLAPYISLGIFM-----EVLKLWIKGCKRLMAR-----DRTS-EEDARNRINAQMPLDIKRNNADIVINNTGT 147 (197)
Q Consensus 79 ~~~~l~~i~~p~i~~~~~~-----~i~~~~~~~~~Rl~~R-----~~~s-~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~ 147 (197)
.......+ |.. ..+.. .+....+...+|+++| +..+ .+++.+.+..+.+. +...+|++|+|+++
T Consensus 81 Vi~~g~g~--~~~-~~l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~--~~~~a~~~Id~~~~ 155 (168)
T 1zuh_A 81 VISTGGGI--VMH-ENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQAL--YEKNASFIIDARGG 155 (168)
T ss_dssp EEECCGGG--GGC-GGGTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHH--HHHTCSEEEEGGGC
T ss_pred EEECCCCE--ech-hHHhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHH--HHHHCCEEEECCCC
Confidence 00000000 000 00000 0112234456788766 2233 46666666655433 33458999999999
Q ss_pred HHHHHHHHHHHH
Q 029212 148 LDDLNEQVRKVL 159 (197)
Q Consensus 148 ~~~l~~~i~~ii 159 (197)
++++.++|.+.+
T Consensus 156 ~e~~~~~I~~~l 167 (168)
T 1zuh_A 156 LNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999888887643
No 10
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.70 E-value=1e-16 Score=125.40 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=98.6
Q ss_pred CE-EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhcc----CC-----chHHHHHHHhcccccCCCCccchHHH
Q 029212 1 MR-IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKK----GT-----GGWKKVVAAFGEDILLPNGEVDRSKL 69 (197)
Q Consensus 1 m~-~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~----~~-----~~~~~i~~~~G~~~~~~~~~~dr~~l 69 (197)
|. +|+|+|++||||||+++.|++ +|++++|+|.+.+....+ +. ..+.++...+|..+...++..+.-..
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLAD 80 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEEC
Confidence 53 899999999999999999998 899999999999876421 21 24556666676543332222111111
Q ss_pred HhHhcCC---hHHHHHH-hhhhchhhHHHHHHHHH----------------------------HHHHhcchHhhhcCCCC
Q 029212 70 GQIVFSD---SSKRQLL-NGLLAPYISLGIFMEVL----------------------------KLWIKGCKRLMARDRTS 117 (197)
Q Consensus 70 ~~~vf~~---~~~~~~l-~~i~~p~i~~~~~~~i~----------------------------~~~~~~~~Rl~~R~~~s 117 (197)
++.+|.+ +...... ....||.++..+...+. ...+.+.+|+.+|.+.+
T Consensus 81 g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~vi~g~~~~~~~~~~~d~~i~l~a~~e~~~~R~~~r~~~~ 160 (208)
T 3ake_A 81 GEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA 160 (208)
T ss_dssp TEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSCSCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHTSSSC
T ss_pred CeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhcCCEEEEccceeEEEecCCcEEEEEECCHHHHHHHHHhhcccC
Confidence 2222221 1111111 12357776655433211 11233456888887778
Q ss_pred HHHHHHHHHhCCCcc-cc-cCCCc-EEEEcCC-CHHHHHHHHHHHHH
Q 029212 118 EEDARNRINAQMPLD-IK-RNNAD-IVINNTG-TLDDLNEQVRKVLF 160 (197)
Q Consensus 118 ~e~i~~ri~~q~~~~-~~-~~~aD-~vI~N~~-~~~~l~~~i~~ii~ 160 (197)
.+++.+++..+.+.. .+ ...+| ++|+|++ +++++.++|.++++
T Consensus 161 ~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 161 YEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 888888877542221 11 44577 9999997 99999999988764
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.70 E-value=2.2e-17 Score=127.36 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=96.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~ 79 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+.++...++......+.+.++...+.. ..+.+..+.+.+......
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP-SIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhcCCC
Confidence 36899999999999999999997 8999999999988876556666667766665433221 122233333333221000
Q ss_pred HHHHhhhhchhhHHH---HHHH------------HHHHHHhcchHhhhcCC------CCHHHHHHHHHhCC----Ccccc
Q 029212 80 RQLLNGLLAPYISLG---IFME------------VLKLWIKGCKRLMARDR------TSEEDARNRINAQM----PLDIK 134 (197)
Q Consensus 80 ~~~l~~i~~p~i~~~---~~~~------------i~~~~~~~~~Rl~~R~~------~s~e~i~~ri~~q~----~~~~~ 134 (197)
.-.++. +|..... +... +....+...+|+++|++ .+.+++.+|+..+. +..++
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 000010 1211111 0000 01123345668877743 23678888887764 32234
Q ss_pred cCCCc--EEEEcCCCHHHHHHHHHHHHHH
Q 029212 135 RNNAD--IVINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 135 ~~~aD--~vI~N~~~~~~l~~~i~~ii~~ 161 (197)
++.+| ++|+|+++++++.++|.++++.
T Consensus 163 ~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 163 YNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 44577 7899999999999999988865
No 12
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.65 E-value=1.5e-16 Score=125.71 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=97.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCCh-HHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS-SKR 80 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~-~~~ 80 (197)
+|+|+|+|||||||+++.|++ +|++++++|++.++...++.+....+.+.++...+..+..+ ...+.+.+.... ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT-IGIVKERLGKDDCERG 80 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHH-HHHHHHHHTSGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcccccCC
Confidence 488999999999999999986 99999999999999888777777777777766544332111 122222221110 000
Q ss_pred HHHhhhhchhhHHHH---HHHH-------------HHHHHhcchHhhhc-------------------------------
Q 029212 81 QLLNGLLAPYISLGI---FMEV-------------LKLWIKGCKRLMAR------------------------------- 113 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~---~~~i-------------~~~~~~~~~Rl~~R------------------------------- 113 (197)
..++. +|...... ...+ ....+...+|+++|
T Consensus 81 ~ildg--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 81 FLLDG--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred EEEeC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 01111 23322211 1111 01123455688777
Q ss_pred --CCCCHHHHHHHHHhCC----CcccccCC--CcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 114 --DRTSEEDARNRINAQM----PLDIKRNN--ADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 114 --~~~s~e~i~~ri~~q~----~~~~~~~~--aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.+.+.+.+++|+.... +..+++.. ..++|+|+++++++.++|.++++.+
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 4578889998887542 22222222 3478999999999999999888654
No 13
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=99.65 E-value=1.5e-17 Score=134.99 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=42.8
Q ss_pred cchHhhhcCC----CCHHHHHHHHHhCCCcc-cccCCCcEEEEcCCCHHHHHHHHHHHHHH
Q 029212 106 GCKRLMARDR----TSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 106 ~~~Rl~~R~~----~s~e~i~~ri~~q~~~~-~~~~~aD~vI~N~~~~~~l~~~i~~ii~~ 161 (197)
..+|+++|++ .+.+.. +++.+|++.. .+.+.||+||+|+++++++.++|.++++.
T Consensus 181 qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~~ 240 (241)
T 1dek_A 181 EMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV 240 (241)
T ss_dssp HHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 4569999854 333222 4677788876 58889999999999999999999998864
No 14
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.64 E-value=4.3e-15 Score=117.44 Aligned_cols=150 Identities=16% Similarity=0.206 Sum_probs=92.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH----hccCCchHHHHHHH-------h------cccccCCCCcc
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV----LKKGTGGWKKVVAA-------F------GEDILLPNGEV 64 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l----~~~~~~~~~~i~~~-------~------G~~~~~~~~~~ 64 (197)
+|+|+|++||||||+++.|++ +|++++|+|.+.+++ .+++. ...+.+. | |.+++. +|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~-~g~~ 81 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVIL-DNED 81 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEE-TTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEe-CCcc
Confidence 799999999999999999998 899999999999875 33332 2233333 4 444443 4432
Q ss_pred chHHHHhHhcCChHHHHHHhh-hhchhhHHHHHHHHHH------------------------------HHHhcchHhhh-
Q 029212 65 DRSKLGQIVFSDSSKRQLLNG-LLAPYISLGIFMEVLK------------------------------LWIKGCKRLMA- 112 (197)
Q Consensus 65 dr~~l~~~vf~~~~~~~~l~~-i~~p~i~~~~~~~i~~------------------------------~~~~~~~Rl~~- 112 (197)
.++. +.++.....++. +.||.+...+...... ..+...+|+++
T Consensus 82 ~~~~-----~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~ 156 (219)
T 2h92_A 82 VTDF-----LRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKD 156 (219)
T ss_dssp CGGG-----SSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred chhh-----cCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHH
Confidence 2222 233333333332 3577776544321100 01223447642
Q ss_pred --cCCC--CHHHHHHHHHhCC------CcccccCCCc-EEEEcCC-CHHHHHHHHHHHHH
Q 029212 113 --RDRT--SEEDARNRINAQM------PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLF 160 (197)
Q Consensus 113 --R~~~--s~e~i~~ri~~q~------~~~~~~~~aD-~vI~N~~-~~~~l~~~i~~ii~ 160 (197)
+++. +.+++.+++..|. ...+.+..+| ++|+|++ +++++.++|.++++
T Consensus 157 ~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 157 NQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 2355 7888888887663 1113344566 9999997 99999999888765
No 15
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.2e-16 Score=122.82 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=92.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh------
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------ 73 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------ 73 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+..+.. +..+.++++..|+..|+. ++...+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~---g~~i~~~~~~~~~~~~~~---~e~~~l~~l~~~~~~v 98 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF---HKTVGELFTERGEAGFRE---LERNMLHEVAEFENVV 98 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH---TSCHHHHHHHHHHHHHHH---HHHHHHHHHTTCSSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh---CCcHHHHHHhcChHHHHH---HHHHHHHHHhhcCCcE
Confidence 56899999999999999999997 8999999999887765 234667777777666552 3333332221
Q ss_pred -------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhh-hc---C---CCCHHHHHHHHHhCCCc-ccccCCC
Q 029212 74 -------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLM-AR---D---RTSEEDARNRINAQMPL-DIKRNNA 138 (197)
Q Consensus 74 -------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~-~R---~---~~s~e~i~~ri~~q~~~-~~~~~~a 138 (197)
..+++.++.+... ...|+ +....+...+|+. .| + +.+.+++.+++..+... .+.++.|
T Consensus 99 i~~ggg~~~~~~~~~~l~~~-~~vi~------L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~a 171 (199)
T 3vaa_A 99 ISTGGGAPCFYDNMEFMNRT-GKTVF------LNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQA 171 (199)
T ss_dssp EECCTTGGGSTTHHHHHHHH-SEEEE------EECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EECCCcEEccHHHHHHHHcC-CEEEE------EECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhC
Confidence 1112222222110 00000 1122344566776 33 1 34555555555554332 2234459
Q ss_pred cEEEEcCC-CHHHHHHHHHHHHHHHh
Q 029212 139 DIVINNTG-TLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 139 D~vI~N~~-~~~~l~~~i~~ii~~l~ 163 (197)
|++|+|++ +++++.++|.+.++.+.
T Consensus 172 d~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 172 QYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99999998 89999999988887654
No 16
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.62 E-value=1.9e-16 Score=122.06 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=87.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH--------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI-------- 72 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~-------- 72 (197)
+.|+|+|++||||||+++.|++ +|++++|+|.+.++... ....++++.+|+..|+ .++...+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g---~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~vi 79 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG---ADIAWIFEMEGEAGFR---RREREMIEALCKLDNIIL 79 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT---SCHHHHHHHHHHHHHH---HHHHHHHHHHHHSSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC---CChhhHHHHhCHHHHH---HHHHHHHHHHHhcCCcEE
Confidence 5799999999999999999998 89999999999888653 2356788888877665 2333333222
Q ss_pred -----hcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHh--hh---cCCCCHHHHHHHHHhCCCc--ccccCCCcE
Q 029212 73 -----VFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRL--MA---RDRTSEEDARNRINAQMPL--DIKRNNADI 140 (197)
Q Consensus 73 -----vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl--~~---R~~~s~e~i~~ri~~q~~~--~~~~~~aD~ 140 (197)
+..++..++.+... ...|+ +....+...+|+ .. |+..+.++..+++..+... ..+...||+
T Consensus 80 ~~gg~~~~~~~~~~~l~~~-~~vi~------L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~ 152 (185)
T 3trf_A 80 ATGGGVVLDEKNRQQISET-GVVIY------LTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADL 152 (185)
T ss_dssp ECCTTGGGSHHHHHHHHHH-EEEEE------EECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred ecCCceecCHHHHHHHHhC-CcEEE------EECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCE
Confidence 11223333332211 00000 112344556788 33 3223333333333333221 112334999
Q ss_pred EEEcCC-CHHHHHHHHHHHHHHH
Q 029212 141 VINNTG-TLDDLNEQVRKVLFEI 162 (197)
Q Consensus 141 vI~N~~-~~~~l~~~i~~ii~~l 162 (197)
+|+|++ +++++.++|.+.+...
T Consensus 153 ~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 153 VYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp EEECTTCCHHHHHHHHHHHSCC-
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 999998 8888888887766543
No 17
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.61 E-value=3e-16 Score=123.89 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=95.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH-
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR- 80 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~- 80 (197)
+|+|+|+|||||||+++.|++ +|++++++|++.++...++......+.+.++...+..+ .+....+.+.+.......
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD-EVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHTSGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcccCCCc
Confidence 588999999999999999986 99999999999999888776677777776665444322 111222222221110000
Q ss_pred HHHhhhhchhhHHHH---HHHH-------------HHHHHhcchHhhhc-------------------------------
Q 029212 81 QLLNGLLAPYISLGI---FMEV-------------LKLWIKGCKRLMAR------------------------------- 113 (197)
Q Consensus 81 ~~l~~i~~p~i~~~~---~~~i-------------~~~~~~~~~Rl~~R------------------------------- 113 (197)
-.++. +|...... ...+ ....+...+|+++|
T Consensus 81 ~ildg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 81 FLLDG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred EEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 00010 12221111 0000 01123455688777
Q ss_pred --CCCCHHHHHHHHHhCCCc----ccccCC--CcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 114 --DRTSEEDARNRINAQMPL----DIKRNN--ADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 114 --~~~s~e~i~~ri~~q~~~----~~~~~~--aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.+.+.+.+++|+...... .+++.. ..++|+|+++++++.++|.+++..+
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 346788888888755322 222222 3478999999999999999988753
No 18
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.60 E-value=1.9e-15 Score=114.50 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=87.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCc-cchHHHHhHhcC---
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGE-VDRSKLGQIVFS--- 75 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~-~dr~~l~~~vf~--- 75 (197)
|++|+|+|++||||||+++.|++ +|+++++.|.+..... ....+++. ++........ .||...+..+|.
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~-----~~~~~~~~-~~~l~~~~~vi~dr~~~~~~v~~~~~ 74 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS-----GNEKLFEH-FNKLADEDNVIIDRFVYSNLVYAKKF 74 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT-----CHHHHHHH-HHHHTTCCSEEEESCHHHHHHHTTTB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh-----HHHHHHHH-HHHHHhCCCeEEeeeecchHHHHHHH
Confidence 88999999999999999999997 7999999998776543 12222221 2211111111 355555556664
Q ss_pred ------ChHHHHHHhhhhc-hhhHHHHHHHHHHHHHhcchHhhhcC--CCCHHHHHHHHHhC-CCcccccCCCcEEEEcC
Q 029212 76 ------DSSKRQLLNGLLA-PYISLGIFMEVLKLWIKGCKRLMARD--RTSEEDARNRINAQ-MPLDIKRNNADIVINNT 145 (197)
Q Consensus 76 ------~~~~~~~l~~i~~-p~i~~~~~~~i~~~~~~~~~Rl~~R~--~~s~e~i~~ri~~q-~~~~~~~~~aD~vI~N~ 145 (197)
.+..+..++.... |.+.- .+...++...+|+.+|. ..+. +..+++... ....+.+..++++|+|+
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~~i----~l~~~~e~~~~R~~~r~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~ 149 (173)
T 3kb2_A 75 KDYSILTERQLRFIEDKIKAKAKVV----YLHADPSVIKKRLRVRGDEYIEG-KDIDSILELYREVMSNAGLHTYSWDTG 149 (173)
T ss_dssp TTCCCCCHHHHHHHHHHHTTTEEEE----EEECCHHHHHHHHHHHSCSCCCH-HHHHHHHHHHHHHHHTCSSCEEEEETT
T ss_pred HHhhHhhHHHHHHHhccCCCCCEEE----EEeCCHHHHHHHHHhcCCcchhh-hHHHHHHHHHHHHHhhcCCCEEEEECC
Confidence 2223333322111 11000 01123445667887763 2333 233333222 22222344688999999
Q ss_pred C-CHHHHHHHHHHHHHHHhcC
Q 029212 146 G-TLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 146 ~-~~~~l~~~i~~ii~~l~~~ 165 (197)
+ +++++.++|.+.++....+
T Consensus 150 ~~~~~ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 150 QWSSDEIAKDIIFLVELEHHH 170 (173)
T ss_dssp TSCHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHhCCCcc
Confidence 6 9999999999999886654
No 19
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.59 E-value=7.7e-15 Score=117.85 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=92.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh----ccCCc-----hHHHHHHH----h------cccccCCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL----KKGTG-----GWKKVVAA----F------GEDILLPN 61 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~----~~~~~-----~~~~i~~~----~------G~~~~~~~ 61 (197)
.+|+|+|++||||||+++.|++ +|++++|+|.+.+... +++.+ .+.++... | |.+++. +
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~-~ 95 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFV-G 95 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEE-T
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEeE-C
Confidence 4799999999999999999998 9999999999998753 23322 22233221 2 334443 3
Q ss_pred Cc-cchHHHH-hHhcCChHHHHHHhhhhchhhHHHHHHHHHH------------------------------HHHhcchH
Q 029212 62 GE-VDRSKLG-QIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------------------------------LWIKGCKR 109 (197)
Q Consensus 62 ~~-~dr~~l~-~~vf~~~~~~~~l~~i~~p~i~~~~~~~i~~------------------------------~~~~~~~R 109 (197)
|. ++| .+. +.+|.++.. .+.||.++..+...... ..+...+|
T Consensus 96 G~~~~r-~l~~~~v~~~~~~-----~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~~l~~~d~vi~L~a~~e~~~~R 169 (236)
T 1q3t_A 96 DVDITH-PIRENEVTNHVSA-----IAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAER 169 (236)
T ss_dssp TEEESS-SSCSHHHHHHHHH-----HHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHH
T ss_pred CcCchh-hhccHHHHHHHHH-----HccCHHHHHHHHHHHHHhcccCCEEEECCcchhhhccCCCEEEEEECCHHHHHHH
Confidence 43 333 222 133322221 34577666544322110 01223446
Q ss_pred h----hhcC-CCCHHHHHHHHHh-CCCc-----ccccCCCc-EEEEcCC-CHHHHHHHHHHHHHH
Q 029212 110 L----MARD-RTSEEDARNRINA-QMPL-----DIKRNNAD-IVINNTG-TLDDLNEQVRKVLFE 161 (197)
Q Consensus 110 l----~~R~-~~s~e~i~~ri~~-q~~~-----~~~~~~aD-~vI~N~~-~~~~l~~~i~~ii~~ 161 (197)
+ .+|+ +.+.+++.+++.. |.+. .+.+..+| ++|+|++ +++++.++|.++++.
T Consensus 170 ~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 170 RYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5 5665 5688888777765 3222 12233355 9999996 999999999988764
No 20
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.57 E-value=5.4e-16 Score=118.02 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=85.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~ 79 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+.++.. +....++++.+|+..+. .+++..+..+. ..+-.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~---g~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~~v 74 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS---GMTVADVVAAEGWPGFR---RRESEALQAVA-TPNRV 74 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH---CSCHHHHHHHHHHHHHH---HHHHHHHHHHC-CSSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh---CCCHHHHHHHcCHHHHH---HHHHHHHHHhh-cCCeE
Confidence 56899999999999999999998 8999999999988763 22345566556655443 12222222211 00000
Q ss_pred HHHHh-hhhchhhHHHHHHH-----HHHHHHhcchHhh--hc-C---CCCHHHHHHHHHhCCCcc-cccCCCcEEEEcC-
Q 029212 80 RQLLN-GLLAPYISLGIFME-----VLKLWIKGCKRLM--AR-D---RTSEEDARNRINAQMPLD-IKRNNADIVINNT- 145 (197)
Q Consensus 80 ~~~l~-~i~~p~i~~~~~~~-----i~~~~~~~~~Rl~--~R-~---~~s~e~i~~ri~~q~~~~-~~~~~aD~vI~N~- 145 (197)
..... .+..|..+..+... +....+...+|+. +| . ..+.++..+++..+.... ..+..+|++|+|+
T Consensus 75 i~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~ 154 (173)
T 1e6c_A 75 VATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDAT 154 (173)
T ss_dssp EECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETT
T ss_pred EECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCC
Confidence 00000 00111111111000 1112344567887 66 2 133345555666554331 1222389999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029212 146 GTLDDLNEQVRKVLF 160 (197)
Q Consensus 146 ~~~~~l~~~i~~ii~ 160 (197)
.+++++.++|.+.++
T Consensus 155 ~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 155 QPPAAIVCELMQTMR 169 (173)
T ss_dssp SCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhc
Confidence 699988888877653
No 21
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.57 E-value=3.3e-16 Score=120.70 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=80.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------- 73 (197)
++|+|+|+|||||||+++.|++ +|++++|+|.+.++... ...++++...|+..|+. .+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g---~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~vi 76 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG---RSIADIFATDGEQEFRR---IEEDVVRAALADHDGVL 76 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS---SCHHHHHHHHCHHHHHH---HHHHHHHHHHHHCCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC---CCHHHHHHHhChHHHHH---HHHHHHHHHHhcCCeEE
Confidence 4799999999999999999998 89999999999988753 22445555555544431 1112222111
Q ss_pred ------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCC---CCHHHHHHHHHhCCCc--ccccCCCcEEE
Q 029212 74 ------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDR---TSEEDARNRINAQMPL--DIKRNNADIVI 142 (197)
Q Consensus 74 ------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~---~s~e~i~~ri~~q~~~--~~~~~~aD~vI 142 (197)
.-++..++.+. ....|+ +....+...+|+++|++ .+.++..+++..+... ..+...+|++|
T Consensus 77 ~~g~~~v~~~~~~~~l~--~~~vV~------L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~I 148 (184)
T 2iyv_A 77 SLGGGAVTSPGVRAALA--GHTVVY------LEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRV 148 (184)
T ss_dssp ECCTTGGGSHHHHHHHT--TSCEEE------EECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred ecCCcEEcCHHHHHHHc--CCeEEE------EeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 01111111110 000000 11223445678877743 1211222333333221 11334689999
Q ss_pred EcC-CCHHHHHHHHHHHH
Q 029212 143 NNT-GTLDDLNEQVRKVL 159 (197)
Q Consensus 143 ~N~-~~~~~l~~~i~~ii 159 (197)
+|+ .+++++.++|.+.+
T Consensus 149 dt~~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 149 DTNRRNPGAVVRHILSRL 166 (184)
T ss_dssp ECSSSCHHHHHHHHHTTS
T ss_pred ECCCCCHHHHHHHHHHHH
Confidence 999 58888888877654
No 22
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.57 E-value=3.1e-16 Score=119.47 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=77.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
.+|+|+|++||||||+++.|+. +|++++|+|.+.++... ..+..+++.+|+..|+. .+...+......+.-..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~---~~i~~i~~~~g~~~~~~---~~~~~l~~l~~~~~~v~ 78 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG---ADVGWVFDLEGEEGFRD---REEKVINELTEKQGIVL 78 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT---SCHHHHHHHHHHHHHHH---HHHHHHHHHHTSSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC---cCHHHHHHHHhHHHHHH---HHHHHHHHHHhCCCeEE
Confidence 4799999999999999999998 89999999999887652 34566777777765542 11122222110000000
Q ss_pred HHHh-hhhchhhHHHHHHHH------HHHHHhcchHhhhcC---CCC-----HHHHHHHHHhCCCcccccCCCcEEEEcC
Q 029212 81 QLLN-GLLAPYISLGIFMEV------LKLWIKGCKRLMARD---RTS-----EEDARNRINAQMPLDIKRNNADIVINNT 145 (197)
Q Consensus 81 ~~l~-~i~~p~i~~~~~~~i------~~~~~~~~~Rl~~R~---~~s-----~e~i~~ri~~q~~~~~~~~~aD~vI~N~ 145 (197)
.... ....+..... .... ........+|+.+|. ..+ .+.+...+....+ .|.+.+|++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~-l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~--~~~~~a~~~id~~ 155 (173)
T 1kag_A 79 ATGGGSVKSRETRNR-LSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNP--LYEEIADVTIRTD 155 (173)
T ss_dssp ECCTTGGGSHHHHHH-HHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHH--HHHHHCSEEC---
T ss_pred ECCCeEEecHHHHHH-HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHH--HHHhhCCEEEECC
Confidence 0000 0001111110 0010 112234456776652 211 3334333322222 2345689999999
Q ss_pred -CCHHHHHHHHHHHHH
Q 029212 146 -GTLDDLNEQVRKVLF 160 (197)
Q Consensus 146 -~~~~~l~~~i~~ii~ 160 (197)
.+++++.++|.+.++
T Consensus 156 ~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 156 DQSAKVVANQIIHMLE 171 (173)
T ss_dssp --CHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 599999988887764
No 23
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.56 E-value=1.7e-15 Score=116.69 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=86.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------- 73 (197)
++|+|+|++||||||+++.|++ +|++++++|++.++.+..+......+.+.++......+..+ ...+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~l~~~~i~d 83 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLI-LELIREELAERVIFD 83 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH-HHHHHHHCCSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHH-HHHHHHHhcCCEEEe
Confidence 4799999999999999999997 89999999999887655444444555555543221111111 11222211
Q ss_pred --cCChHHHHHHhhhhc-----hhhHHHHHHHHHHHHHhcchHhhhcC---C---CCHHHHHHHHHhCCCc----ccccC
Q 029212 74 --FSDSSKRQLLNGLLA-----PYISLGIFMEVLKLWIKGCKRLMARD---R---TSEEDARNRINAQMPL----DIKRN 136 (197)
Q Consensus 74 --f~~~~~~~~l~~i~~-----p~i~~~~~~~i~~~~~~~~~Rl~~R~---~---~s~e~i~~ri~~q~~~----~~~~~ 136 (197)
..+......++.++. |...- .+....+...+|+.+|+ + .+.+.+.+|+..+... .++++
T Consensus 84 g~~~~~~~~~~l~~~l~~~~~~~~~vi----~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~ 159 (186)
T 3cm0_A 84 GFPRTLAQAEALDRLLSETGTRLLGVV----LVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYE 159 (186)
T ss_dssp SCCCSHHHHHHHHHHHHHTTEEEEEEE----EEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCEEE----EEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111000 00000 00112334556877663 2 4677888777765322 22333
Q ss_pred CC--cEEEEcCCCHHHHHHHHHHHH
Q 029212 137 NA--DIVINNTGTLDDLNEQVRKVL 159 (197)
Q Consensus 137 ~a--D~vI~N~~~~~~l~~~i~~ii 159 (197)
.+ +++|+|+++++++.++|.+.+
T Consensus 160 ~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 160 ARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred hcCcEEEEECCCCHHHHHHHHHHHh
Confidence 34 578999999999999988765
No 24
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.56 E-value=1.5e-15 Score=115.18 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=84.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhH------hcC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI------VFS 75 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~------vf~ 75 (197)
+|+|+|++||||||+++.|++ +|++++|+|.+.++... ..+.++++.+|+..++ .+++..+..+ |..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g---~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~Vi~ 75 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG---LSIPQIFEKKGEAYFR---KLEFEVLKDLSEKENVVIS 75 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT---SCHHHHHHHSCHHHHH---HHHHHHHHHHTTSSSEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC---CCHHHHHHHhChHHHH---HHHHHHHHHHhccCCeEEE
Confidence 599999999999999999998 89999999999988752 3466777777765553 1333333221 111
Q ss_pred -------ChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcC---CCC--HHHHHHHHHhCCCcccccCCCcEEEE
Q 029212 76 -------DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARD---RTS--EEDARNRINAQMPLDIKRNNADIVIN 143 (197)
Q Consensus 76 -------~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~---~~s--~e~i~~ri~~q~~~~~~~~~aD~vI~ 143 (197)
.+..+..+... ...|+ +....+...+|+.+|+ ..+ .+.+.+++..+.+. +.. +|++|
T Consensus 76 ~g~~~~~~~~~~~~l~~~-~~~i~------l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~--~~~-~~~~i- 144 (168)
T 2pt5_A 76 TGGGLGANEEALNFMKSR-GTTVF------IDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKI--YSK-ADIKV- 144 (168)
T ss_dssp CCHHHHTCHHHHHHHHTT-SEEEE------EECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHH--HTT-SSEEE-
T ss_pred CCCCEeCCHHHHHHHHcC-CEEEE------EECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHH--HHh-CCEEE-
Confidence 11111111110 00000 1122344566877652 222 34455555544332 334 99999
Q ss_pred cC-CCHHHHHHHHHHHHH
Q 029212 144 NT-GTLDDLNEQVRKVLF 160 (197)
Q Consensus 144 N~-~~~~~l~~~i~~ii~ 160 (197)
|+ ++++++.++|.+++.
T Consensus 145 ~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 145 KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 77 699999999888775
No 25
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.56 E-value=4.4e-16 Score=126.42 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=85.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCC----------eeehhHHHHHHhccCCchHHHH-HHHhcccccCCCCccchHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVP----------VVDADIIARDVLKKGTGGWKKV-VAAFGEDILLPNGEVDRSK 68 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~----------~id~D~i~~~l~~~~~~~~~~i-~~~~G~~~~~~~~~~dr~~ 68 (197)
|.+|+|+|++||||||+|+.|++ +|++ ++++|.+.+++.. ..+ +...|+..|.....+|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~------~~~~~~~~g~~~f~~~~~~d~~~ 95 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS------EQKAKALKGQFNFDHPDAFDNEL 95 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH------HHHHHHHTTCSCTTSGGGBCHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh------hhhhhhccCCCCCCCcchhhHHH
Confidence 46899999999999999999998 8998 7999988764311 111 2334443343222222111
Q ss_pred HHhHhcCChHHHHHHhhhhc---------------------------------hhhH--HHHHHH------HHHHHHhcc
Q 029212 69 LGQIVFSDSSKRQLLNGLLA---------------------------------PYIS--LGIFME------VLKLWIKGC 107 (197)
Q Consensus 69 l~~~vf~~~~~~~~l~~i~~---------------------------------p~i~--~~~~~~------i~~~~~~~~ 107 (197)
+ ++.|+.+.| +.+. ..+... +....+...
T Consensus 96 l----------~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~ 165 (252)
T 1uj2_A 96 I----------LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRL 165 (252)
T ss_dssp H----------HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHH
T ss_pred H----------HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHH
Confidence 1 111111111 0000 000000 011123456
Q ss_pred hHhhhcC----CCCHHHHHHHHHhCCC--c----ccccCCCcEEE----EcCCCHHHHHHHHHHHHHHH
Q 029212 108 KRLMARD----RTSEEDARNRINAQMP--L----DIKRNNADIVI----NNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 108 ~Rl~~R~----~~s~e~i~~ri~~q~~--~----~~~~~~aD~vI----~N~~~~~~l~~~i~~ii~~l 162 (197)
+|+.+|+ |.+.+++.+++..+.. . .++...||++| +|+++++++.++|.+++...
T Consensus 166 ~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~ 234 (252)
T 1uj2_A 166 SRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGG 234 (252)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccc
Confidence 6777775 7899998888877642 1 13466799999 88778899999988877643
No 26
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.55 E-value=8.3e-15 Score=114.50 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=85.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHH-Hh--cccccCCCCccchHHHHhHhcCC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVA-AF--GEDILLPNGEVDRSKLGQIVFSD 76 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~-~~--G~~~~~~~~~~dr~~l~~~vf~~ 76 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+.++...+++..+.+... .+ |+..+. .+....+.+.+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~l~~~i~-- 89 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ---EITLALLRNAIS-- 89 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCH---HHHHHHHHHHHH--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCH---HHHHHHHHHHHH--
Confidence 67899999999999999999996 9999999999998876544433333222 22 221100 011111111110
Q ss_pred hHHHHHH-hhhh---chhhHHH--HHHHH----------HHHHHhcchHhhhcC------CCCHHHHHHHH----HhCCC
Q 029212 77 SSKRQLL-NGLL---APYISLG--IFMEV----------LKLWIKGCKRLMARD------RTSEEDARNRI----NAQMP 130 (197)
Q Consensus 77 ~~~~~~l-~~i~---~p~i~~~--~~~~i----------~~~~~~~~~Rl~~R~------~~s~e~i~~ri----~~q~~ 130 (197)
...... ..++ +|.-... .+... ....+...+|+.+|+ ..+.+.+.+|+ ..+.|
T Consensus 90 -~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~ 168 (203)
T 1ukz_A 90 -DNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP 168 (203)
T ss_dssp -HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred -hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 000000 0111 1110110 00000 011234556887663 13577777774 33445
Q ss_pred cccccCCCcE--EEEcCCCHHHHHHHHHHHHHH
Q 029212 131 LDIKRNNADI--VINNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 131 ~~~~~~~aD~--vI~N~~~~~~l~~~i~~ii~~ 161 (197)
..+++..+|. +|+|+++++++.++|.++++.
T Consensus 169 ~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 169 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 4444555665 369999999999999988764
No 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.55 E-value=1e-16 Score=124.31 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=81.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC--CCCeeehhHHHHHHhccCCchHHHHHHHhccccc---CCCCccchHHHHhHhcCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN--DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDIL---LPNGEVDRSKLGQIVFSD 76 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~--G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~---~~~~~~dr~~l~~~vf~~ 76 (197)
++|+|+|+|||||||+++.|++. |++++|+|.+.++.. ....+.+.++..++ .++.. ...+...+-..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~--~~~l~~~~~~~ 83 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-----FYTEYDTELDTHIIEEKDEDRL--LDFMEPIMVSR 83 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-----CSCC------CCCCCHHHHHHH--HHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-----hhhhHHHHhhhcccCCCCHHHH--HHHHHHHHhcc
Confidence 47999999999999999999974 999999999988731 11112223333222 00000 01111111000
Q ss_pred hHHHHHHhhhhchhhHHHHHH-------HHHHHHHhcchHhhhcCCCCHHHHHHHHHhC-CCc---c--cccCCCcEEEE
Q 029212 77 SSKRQLLNGLLAPYISLGIFM-------EVLKLWIKGCKRLMARDRTSEEDARNRINAQ-MPL---D--IKRNNADIVIN 143 (197)
Q Consensus 77 ~~~~~~l~~i~~p~i~~~~~~-------~i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q-~~~---~--~~~~~aD~vI~ 143 (197)
. ..++.......+.. .+....+...+|+.+| +.+.+.+..++..| +.. + ..++ +|++|+
T Consensus 84 g------~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R-~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~~~vi~ 155 (184)
T 1y63_A 84 G------NHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKR-QYSEAKRAENMEAEIQCICEEEARDAYE-DDIVLV 155 (184)
T ss_dssp S------EEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHT-TCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEE
T ss_pred C------CEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhC-CCChhhhHhhHHHHHHHHHHHHHHHHhc-cCcEEE
Confidence 0 00000000000000 0112234567799888 66777776666555 221 1 1233 588998
Q ss_pred -cCCCHHHHHHHHHHHHHHHhc
Q 029212 144 -NTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 144 -N~~~~~~l~~~i~~ii~~l~~ 164 (197)
|+++++++.++++++++.+..
T Consensus 156 ~n~~~~~~~~~~v~~i~~~l~~ 177 (184)
T 1y63_A 156 RENDTLEQMAATVEEIRERVEV 177 (184)
T ss_dssp EECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 778999999999999887653
No 28
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.55 E-value=7.6e-15 Score=116.38 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=89.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhc----cCC-----chHHHHHHHhcccccCCCCccchHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLK----KGT-----GGWKKVVAAFGEDILLPNGEVDRSKLGQ 71 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~----~~~-----~~~~~i~~~~G~~~~~~~~~~dr~~l~~ 71 (197)
++|+|+|++||||||+++.|++ +|++++|+|.+.++... .+. ....++...+|..+...++ .++..+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 84 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNG-NLEVILEG 84 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETT-EEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCC-CceEEECC
Confidence 4799999999999999999997 89999999999986542 222 2344566666643321111 11111111
Q ss_pred H----hcCChHHHHHHhh-hhchhhHHHHHHHHH------------------------------HHHHhcchH----hhh
Q 029212 72 I----VFSDSSKRQLLNG-LLAPYISLGIFMEVL------------------------------KLWIKGCKR----LMA 112 (197)
Q Consensus 72 ~----vf~~~~~~~~l~~-i~~p~i~~~~~~~i~------------------------------~~~~~~~~R----l~~ 112 (197)
. -+.+.+....+.. ..||.++..+..... ...+...+| +.+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~~l~~ 164 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQV 164 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 1 1233333322222 146766654432211 001223345 334
Q ss_pred cCCC--CHHHHHHHHHhC----CCcc-cccC--CCcEEEEcC-CCHHHHHHHHHHHHHHHh
Q 029212 113 RDRT--SEEDARNRINAQ----MPLD-IKRN--NADIVINNT-GTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 113 R~~~--s~e~i~~ri~~q----~~~~-~~~~--~aD~vI~N~-~~~~~l~~~i~~ii~~l~ 163 (197)
| |. +.++..+++..+ .+.. +... .++++|+|+ ++++++.++|.++++...
T Consensus 165 r-g~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 165 K-GFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp H-TCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred C-CccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 4 44 667666666543 2211 1222 234999999 699999999999887543
No 29
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.55 E-value=1.1e-14 Score=113.93 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=85.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh--cccccCCCCccchHHHHhHh-----
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF--GEDILLPNGEVDRSKLGQIV----- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~--G~~~~~~~~~~dr~~l~~~v----- 73 (197)
++|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.+ |+..+. ......+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~---~~~~~~~~~~~~~~~~ 97 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS---DLTNELVDDRLNNPDA 97 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH---HHHHHHHHHHTTSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcccC
Confidence 4799999999999999999997 899999999998886554444334444443 221111 00011111111
Q ss_pred -----cC----ChHHHHHHhhhhc-----hhhHHHHHHHHHHHHHhcchHhhhcCC--CCHHHHHHHHHhCC----Cccc
Q 029212 74 -----FS----DSSKRQLLNGLLA-----PYISLGIFMEVLKLWIKGCKRLMARDR--TSEEDARNRINAQM----PLDI 133 (197)
Q Consensus 74 -----f~----~~~~~~~l~~i~~-----p~i~~~~~~~i~~~~~~~~~Rl~~R~~--~s~e~i~~ri~~q~----~~~~ 133 (197)
+. +......++.++. |.+. ..+....+...+|+.+|++ .+.+.+.+|+..+. +..+
T Consensus 98 ~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~v----i~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~ 173 (201)
T 2cdn_A 98 ANGFILDGYPRSVEQAKALHEMLERRGTDIDAV----LEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLE 173 (201)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEE----EEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEE----EEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 00 1111111111000 0000 0001123345678887743 46777777776553 2223
Q ss_pred ccCCCcEEEEcCCCHHHHHHHHHHHH
Q 029212 134 KRNNADIVINNTGTLDDLNEQVRKVL 159 (197)
Q Consensus 134 ~~~~aD~vI~N~~~~~~l~~~i~~ii 159 (197)
++..++++|+|+++++++.++|.+++
T Consensus 174 ~~~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 174 YYRDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp HTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence 44567889999999999999888765
No 30
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.54 E-value=5.7e-14 Score=114.18 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=91.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh----ccC-----CchHHHHHHHhcccccCCCCccchHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL----KKG-----TGGWKKVVAAFGEDILLPNGEVDRSKLGQ 71 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~----~~~-----~~~~~~i~~~~G~~~~~~~~~~dr~~l~~ 71 (197)
.+|+|+|++||||||+++.|++ +|++++|+|.+.+.+. ..+ .....++...+|..... ++..++..+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 106 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS-QNGQLQVILEG 106 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE-ETTEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec-CCCCceEEECC
Confidence 4799999999999999999997 8999999999986653 211 12344555555532211 11001111111
Q ss_pred HhcC----ChHHHHHHhhh-hchhhHHHHHHHHH------------------------------HHHHhcchHhhh----
Q 029212 72 IVFS----DSSKRQLLNGL-LAPYISLGIFMEVL------------------------------KLWIKGCKRLMA---- 112 (197)
Q Consensus 72 ~vf~----~~~~~~~l~~i-~~p~i~~~~~~~i~------------------------------~~~~~~~~Rl~~---- 112 (197)
..+. .++.......+ .||.++..+..... ++.+.+.+|+.+
T Consensus 107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~l~~ 186 (252)
T 4e22_A 107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQLQE 186 (252)
T ss_dssp EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 1111 11111111111 36666654432211 112234446544
Q ss_pred -cCCCCHHHHHHHHHhCCCc------ccccCCCc-EEEEcCC-CHHHHHHHHHHHHHHHh
Q 029212 113 -RDRTSEEDARNRINAQMPL------DIKRNNAD-IVINNTG-TLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 113 -R~~~s~e~i~~ri~~q~~~------~~~~~~aD-~vI~N~~-~~~~l~~~i~~ii~~l~ 163 (197)
+.+.+.+++.+++..+... .+.+..+| ++|+|++ +++++.++|.++++...
T Consensus 187 ~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 187 RGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 5578889988888776542 12344566 8999998 89999999999887654
No 31
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.53 E-value=1.1e-14 Score=117.76 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=95.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
++|+|+|+|||||||+++.|++ +|++++++|++.++...++......+.+.++...+.++..+ ...+.+.+.......
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~ 108 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMV-LSLVDEKLKTPQCKK 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHH-HHHHHHHTTSGGGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHH-HHHHHHHHhcccccC
Confidence 5799999999999999999997 89999999999999887777677777777766554433211 223333333211000
Q ss_pred H-HHhhhhchhhHHHHH--HH-H-------------HHHHHhcchHhhhcC-----------------------------
Q 029212 81 Q-LLNGLLAPYISLGIF--ME-V-------------LKLWIKGCKRLMARD----------------------------- 114 (197)
Q Consensus 81 ~-~l~~i~~p~i~~~~~--~~-i-------------~~~~~~~~~Rl~~R~----------------------------- 114 (197)
. .++. +|....... .. + ....+...+|+.+|.
T Consensus 109 ~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 186 (243)
T 3tlx_A 109 GFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186 (243)
T ss_dssp EEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence 0 0111 222221110 00 0 011233456777652
Q ss_pred ----CCCHHHHHHHHHhC----CCcccccCCCc--EEEEcCCCHHHHHHHHHHHHH
Q 029212 115 ----RTSEEDARNRINAQ----MPLDIKRNNAD--IVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 115 ----~~s~e~i~~ri~~q----~~~~~~~~~aD--~vI~N~~~~~~l~~~i~~ii~ 160 (197)
..+.+.+++|+... .+..+++...+ ..|+++++++++.++|.+++.
T Consensus 187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 35788898888764 33334444433 467888899999999988764
No 32
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.52 E-value=9e-15 Score=113.47 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=86.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCChHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~~~~ 80 (197)
++|+|+|++||||||+++.|++ +|++++|+|.+.++...++......+.+.++.... +.+..+...+. ....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-----~~~~~~~~~~~--~~i~ 85 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDL-----VPSGIVLELLK--EAMV 85 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCC-----CCHHHHHHHHH--HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCc-----CCHHHHHHHHH--HHHh
Confidence 5799999999999999999998 89999999999887664444444455555432111 11111111110 0000
Q ss_pred HHHh---hhh---chhhHHH---HHHH---------HHHHHHhcchHhhhcCCC------CHHHHHHHHHhCCCcc----
Q 029212 81 QLLN---GLL---APYISLG---IFME---------VLKLWIKGCKRLMARDRT------SEEDARNRINAQMPLD---- 132 (197)
Q Consensus 81 ~~l~---~i~---~p~i~~~---~~~~---------i~~~~~~~~~Rl~~R~~~------s~e~i~~ri~~q~~~~---- 132 (197)
..+. .++ .|.-... +... +....+...+|+.+|++. +.+++.+|+..+....
T Consensus 86 ~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (199)
T 2bwj_A 86 ASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVI 165 (199)
T ss_dssp HHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 1111100 1000 011234456798888531 2356777766554321
Q ss_pred cccC-CCc-EEEEcCCCHHHHHHHHHHHHHHH
Q 029212 133 IKRN-NAD-IVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 133 ~~~~-~aD-~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
+++. .++ ++|+|+++++++.++|.++++.+
T Consensus 166 ~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 166 AYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 1223 244 67898889999999999888654
No 33
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.52 E-value=6.7e-15 Score=119.99 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=93.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHh-------
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV------- 73 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~v------- 73 (197)
.+|+|+|++||||||+++.|++ +|++++|+|.+.++.. ++..+.++++.+|+..|++ ++...+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~--~g~~i~~i~~~~ge~~fr~---~e~~~l~~l~~~~~~~V 123 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM--KGTSVAEIFEHFGESVFRE---KETEALKKLSLMYHQVV 123 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS--TTSCHHHHHHHHCHHHHHH---HHHHHHHHHHHHCSSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh--cCccHHHHHHHhCcHHHHH---HHHHHHHHHHhhcCCcE
Confidence 3699999999999999999998 9999999999998876 2456888999999988862 3333333221
Q ss_pred -------cCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhh-----cCCC-C----------HHHHHHHHHhCCC
Q 029212 74 -------FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMA-----RDRT-S----------EEDARNRINAQMP 130 (197)
Q Consensus 74 -------f~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~-----R~~~-s----------~e~i~~ri~~q~~ 130 (197)
..++.++..+.. +..|+ +....+...+|+.+ |+-. + .+.+...+..+.|
T Consensus 124 ia~GgG~v~~~~~~~~l~~--~~vV~------L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~ 195 (250)
T 3nwj_A 124 VSTGGGAVIRPINWKYMHK--GISIW------LDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGE 195 (250)
T ss_dssp EECCGGGGGSHHHHHHHTT--SEEEE------EECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHH
T ss_pred EecCCCeecCHHHHHHHhC--CcEEE------EECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHH
Confidence 112333333321 11111 12234445667754 2111 1 1334444444433
Q ss_pred cccccCCCcEEE------------EcCC-CHHHHHHHHHHHHHHHhcC
Q 029212 131 LDIKRNNADIVI------------NNTG-TLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 131 ~~~~~~~aD~vI------------~N~~-~~~~l~~~i~~ii~~l~~~ 165 (197)
.++.||.+| ++++ +++++.++|.+.++.+...
T Consensus 196 ---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~ 240 (250)
T 3nwj_A 196 ---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK 240 (250)
T ss_dssp ---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred ---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 345599998 6665 8999999999888877654
No 34
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.48 E-value=1.1e-13 Score=106.65 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=80.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeeehhHHHHHHhccCCchH-HHHHHHhcccccCCCCccchHHHHhHhcCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARDVLKKGTGGW-KKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~D~i~~~l~~~~~~~~-~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~ 76 (197)
++|+|+|++||||||+++.|++ + |++++++|.. ++..+ ..+.+.+.+ |.+++..+ .+|.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~-------~~~~~~~~i~~~~~~------g~~~~~~~--~~~~~ 65 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP-------GGTKVGEVLREILLT------EELDERTE--LLLFE 65 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS-------CSSHHHHHHHHHHHH------SCCCHHHH--HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC-------CCCchHHHHHHHHcC------CCCCHHHH--HHHHH
Confidence 3699999999999999999997 5 9999998731 21111 223222221 22333322 13333
Q ss_pred hHHHHHHhhhhchhhHHH-------------------------HHHHHH----------------HHHHhcchHhhhcCC
Q 029212 77 SSKRQLLNGLLAPYISLG-------------------------IFMEVL----------------KLWIKGCKRLMARDR 115 (197)
Q Consensus 77 ~~~~~~l~~i~~p~i~~~-------------------------~~~~i~----------------~~~~~~~~Rl~~R~~ 115 (197)
.+..+.+++++||.+... ....+. ...+...+|+.+|++
T Consensus 66 ~~~~~~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~ 145 (195)
T 2pbr_A 66 ASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR 145 (195)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc
Confidence 333333333334332110 000010 012234568877766
Q ss_pred CCHHHHHHHHHhCCC-cccccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 116 TSEEDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 116 ~s~e~i~~ri~~q~~-~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.+.+++.+++..+.. ...++ ..+++|+|+++++++.++|.+++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 146 FENKEFLEKVRKGFLELAKEE-ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 655566666643311 11111 34489999999999999998887643
No 35
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.47 E-value=9.3e-15 Score=112.73 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=37.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGT 43 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~ 43 (197)
++|+|+|++||||||+++.|++ +|++++|+|.+.++...+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~ 46 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPD 46 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccC
Confidence 5799999999999999999997 89999999999988766544
No 36
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.47 E-value=4e-14 Score=109.51 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=85.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh--cccccCCCCccchHHHHhHhcCChH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF--GEDILLPNGEVDRSKLGQIVFSDSS 78 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~--G~~~~~~~~~~dr~~l~~~vf~~~~ 78 (197)
++|+|+|++||||||+++.|++ +|++++|+|.+.+.....+......+.+.+ |+..+. ..-...+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~~~i----- 81 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL---ETVLDMLRDAM----- 81 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH---HHHHHHHHHHH-----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH---HHHHHHHHHHH-----
Confidence 5899999999999999999997 899999999998886654444334443333 332211 00011111111
Q ss_pred HHHHH---hhh-h--chhhHHHHH---HH---------HHHHHHhcchHhhhcCC------CCHHHHHHHHHhCCCcc--
Q 029212 79 KRQLL---NGL-L--APYISLGIF---ME---------VLKLWIKGCKRLMARDR------TSEEDARNRINAQMPLD-- 132 (197)
Q Consensus 79 ~~~~l---~~i-~--~p~i~~~~~---~~---------i~~~~~~~~~Rl~~R~~------~s~e~i~~ri~~q~~~~-- 132 (197)
...+ ..+ + .|.-..... .. +....+...+|+.+|+. .+.+.+.+|+..+....
T Consensus 82 -~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~ 160 (196)
T 2c95_A 82 -VAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEP 160 (196)
T ss_dssp -HHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHH
T ss_pred -HhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000 000 0 111111100 00 01123345668877642 35677777776654321
Q ss_pred --cccCCCcE--EEEcCCCHHHHHHHHHHHHHHH
Q 029212 133 --IKRNNADI--VINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 133 --~~~~~aD~--vI~N~~~~~~l~~~i~~ii~~l 162 (197)
+++..+|+ +|+|+++++++.++|.+++..+
T Consensus 161 ~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 161 VIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 12333553 6899889999999999888654
No 37
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.47 E-value=6.9e-14 Score=109.34 Aligned_cols=146 Identities=11% Similarity=0.091 Sum_probs=80.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH----hccCCc--------hHHHHHHHhcccccCCCCccchH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV----LKKGTG--------GWKKVVAAFGEDILLPNGEVDRS 67 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l----~~~~~~--------~~~~i~~~~G~~~~~~~~~~dr~ 67 (197)
|++|+|+|++||||||+++.|++ +|++++|+|.+.... ...+.. ....+.+.. . .+ ..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~-----~-~~---~~ 88 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL-----A-SR---EP 88 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH-----T-SS---SC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH-----h-cC---CC
Confidence 35799999999999999999997 799999999874211 111100 000000000 0 00 00
Q ss_pred HHHhHhcCChHHHHHHhhhh-ch--hhHHHHHHHHHHHHHhcchHhhhcCC--CCHHHHHHHHHhCCCcccccCCCcEEE
Q 029212 68 KLGQIVFSDSSKRQLLNGLL-AP--YISLGIFMEVLKLWIKGCKRLMARDR--TSEEDARNRINAQMPLDIKRNNADIVI 142 (197)
Q Consensus 68 ~l~~~vf~~~~~~~~l~~i~-~p--~i~~~~~~~i~~~~~~~~~Rl~~R~~--~s~e~i~~ri~~q~~~~~~~~~aD~vI 142 (197)
.+-+..+..+..+..+.... .| .|+ +....+...+|+.+|++ .+.+.+.+......+. +...++++|
T Consensus 89 vivd~~~~~~~~~~~l~~~~~~~~~vi~------l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I 160 (202)
T 3t61_A 89 VVVSCSALKRSYRDKLRESAPGGLAFVF------LHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDP--RGEVRTVAV 160 (202)
T ss_dssp CEEECCCCSHHHHHHHHHTSTTCCEEEE------EECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCC--TTSTTEEEE
T ss_pred EEEECCCCCHHHHHHHHHhcCCCeEEEE------EeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCC--CCCCCeEEE
Confidence 00001112233333332211 00 000 11223455678888753 3444454444444332 345689999
Q ss_pred EcCCCHHHHHHHHHHHHHHHh
Q 029212 143 NNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 143 ~N~~~~~~l~~~i~~ii~~l~ 163 (197)
+|+++++++.++|.+.++...
T Consensus 161 d~~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 161 DVAQPLAEIVREALAGLARLA 181 (202)
T ss_dssp ESSSCHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999998887644
No 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.41 E-value=1.6e-14 Score=110.59 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=79.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcCCh--
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS-- 77 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~~~-- 77 (197)
|++|+|+|++||||||+++.|++ +|++++|.|.+.++... ....++++..|+..++. ++...+..+.....
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g---~~~~~~~~~~g~~~~~~---~~~~~~~~l~~~~~~v 77 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN---QKVSEIFEQKRENFFRE---QEQKMADFFSSCEKAC 77 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT---SCHHHHHHHHCHHHHHH---HHHHHHHHHTTCCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC---CCHHHHHHHcCHHHHHH---HHHHHHHHHHccCCEE
Confidence 45799999999999999999997 89999999999877542 23444555555444331 12222221110000
Q ss_pred ------HHHH-HHhhhhchhhHHHHHHHHHHHHHhcchHhhhc-----CCCC-HHHHHHHHHhCCCcccccCCCcEEEEc
Q 029212 78 ------SKRQ-LLNGLLAPYISLGIFMEVLKLWIKGCKRLMAR-----DRTS-EEDARNRINAQMPLDIKRNNADIVINN 144 (197)
Q Consensus 78 ------~~~~-~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R-----~~~s-~e~i~~ri~~q~~~~~~~~~aD~vI~N 144 (197)
.... .+... ...|+ +....+...+|+.+| .... .+.+.+.+....+. +.+.+|++||+
T Consensus 78 i~~g~~~~~~~~l~~~-~~~i~------l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~--y~~~~~~~Idt 148 (175)
T 1via_A 78 IATGGGFVNVSNLEKA-GFCIY------LKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSK--YEQKANFILNI 148 (175)
T ss_dssp EECCTTGGGSTTGGGG-CEEEE------EECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHH--HHHHCSEEEEC
T ss_pred EECCCCEehhhHHhcC-CEEEE------EeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHH--HHhcCCEEEEC
Confidence 0000 01100 00000 112234455676554 1122 45555544433222 22347999999
Q ss_pred C-CCHHHHHHHHHHHHH
Q 029212 145 T-GTLDDLNEQVRKVLF 160 (197)
Q Consensus 145 ~-~~~~~l~~~i~~ii~ 160 (197)
+ .+++++.++|.+.++
T Consensus 149 ~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 149 ENKNIDELLSEIKKVIK 165 (175)
T ss_dssp TTCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 9 488888888877664
No 39
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.39 E-value=1.3e-14 Score=114.50 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=76.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhccccc--CCCCccchHHHHhHhcCChH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDIL--LPNGEVDRSKLGQIVFSDSS 78 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~--~~~~~~dr~~l~~~vf~~~~ 78 (197)
++|+|+|++||||||+++.|++ +|++++| +++.++.....+.. .++++.+|+... ... .+... .. .+..++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~~~~~-~~~~~-~~-~~~~~~~ 81 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMNFAFI-PVPAG-GT-TISLEQD 81 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC-------------------------------------CH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchhHHHH-Hhccc-cc-cccccHH
Confidence 4799999999999999999998 9999999 66776665544433 355666666432 100 00000 00 0000000
Q ss_pred H----HHHHhhhh----chhhH-----HHHHHH--------HHHHHHhcchHhhhcCCCCHHHHHHHHHhCCCc------
Q 029212 79 K----RQLLNGLL----APYIS-----LGIFME--------VLKLWIKGCKRLMARDRTSEEDARNRINAQMPL------ 131 (197)
Q Consensus 79 ~----~~~l~~i~----~p~i~-----~~~~~~--------i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~------ 131 (197)
. .+.+.++. .+.|. ..++.. +.++++.+.+|+.++.+.+.+++.+++..+...
T Consensus 82 ~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~ 161 (201)
T 3fdi_A 82 IAIRQFNFIRKKANEEKESFVIVGRCAEEILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHN 161 (201)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEECCcchhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111111 11110 001000 112345567788877788877776665443211
Q ss_pred ------ccccCCCcEEEEcCC-CHHHHHHHHHHHHH
Q 029212 132 ------DIKRNNADIVINNTG-TLDDLNEQVRKVLF 160 (197)
Q Consensus 132 ------~~~~~~aD~vI~N~~-~~~~l~~~i~~ii~ 160 (197)
......+|++|++++ ++++..+.|...++
T Consensus 162 ~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 162 FYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp HHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 112234899999997 88888877777664
No 40
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.36 E-value=9.7e-13 Score=101.72 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=37.4
Q ss_pred HhcchHhhhcCCCCHHHHHHHHHhCCCc-ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 104 IKGCKRLMARDRTSEEDARNRINAQMPL-DIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e~i~~ri~~q~~~-~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
+...+|+++|++.+.+++.+++..+... ........++|+|+++++++.+++.+.+..+.
T Consensus 133 e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 133 ETALKRKGELNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHC---CCCCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 3456799888766666777776665332 22223344679999999999999988876543
No 41
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.35 E-value=2.3e-12 Score=98.28 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=31.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
.+|+|+|++||||||+++.|+. +|++++|.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 5899999999999999999997 799999999875
No 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.29 E-value=2e-12 Score=101.12 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=75.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCC------ccchH---H----
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG------EVDRS---K---- 68 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~------~~dr~---~---- 68 (197)
+|+|+|++||||||+++.|+. +|..+++.|.+...... -....|. .+.+.. .++.. .
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~--------~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g 101 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI--------ATMQRGI-PLTDEDRWPWLRSLAEWMDARADAG 101 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH--------HHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH--------HHHhcCC-CCCCcccccHHHHHHHHHHHHHhcC
Confidence 799999999999999999997 89999999987421100 0000110 010000 00000 0
Q ss_pred ---HHhHhcCChHHHHHHhhhhchhhHHHHHHHHHHHHHhcchHhhhcCCC--CHHHHHHHHHhCCCcccccCCCcEEEE
Q 029212 69 ---LGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKRLMARDRT--SEEDARNRINAQMPLDIKRNNADIVIN 143 (197)
Q Consensus 69 ---l~~~vf~~~~~~~~l~~i~~p~i~~~~~~~i~~~~~~~~~Rl~~R~~~--s~e~i~~ri~~q~~~~~~~~~aD~vI~ 143 (197)
+....+..+..++.+.....+... ..+....+...+|+.+|++. +.+.+...+....+. +...+|++|+
T Consensus 102 ~~viid~~~~~~~~~~~l~~~~~~~~v----v~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~--~~~~~~~~Id 175 (200)
T 4eun_A 102 VSTIITCSALKRTYRDVLREGPPSVDF----LHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEAL--EPDESGIVLD 175 (200)
T ss_dssp CCEEEEECCCCHHHHHHHTTSSSCCEE----EEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCC--CTTSCEEEEE
T ss_pred CCEEEEchhhhHHHHHHHHHhCCceEE----EEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCC--CCCCCeEEEE
Confidence 000011223333333321100000 00112334567799888542 334444444444332 3345899999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 029212 144 NTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 144 N~~~~~~l~~~i~~ii~~ 161 (197)
|+++++++.++|.+.+..
T Consensus 176 ~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 176 LRQPPEQLIERALTWLDI 193 (200)
T ss_dssp TTSCHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999998888877653
No 43
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.28 E-value=1.8e-12 Score=100.97 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=28.4
Q ss_pred hcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 105 KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 105 ~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
...+|+.+|++.+.+++.+|+..+.+..+++..+|++|+|+ +++++.+++.+++.....
T Consensus 131 ~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~~~~d~vI~n~-~~e~~~~~i~~~l~~~~~ 189 (207)
T 2j41_A 131 HLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVND-EVELAKNRIQCIVEAEHL 189 (207)
T ss_dssp -------------------------CGGGGGGGCSEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccCCEEEECC-CHHHHHHHHHHHHHHhhc
Confidence 45679988977788889999999887666677899999998 899999999999876543
No 44
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.27 E-value=1.9e-13 Score=104.83 Aligned_cols=35 Identities=37% Similarity=0.410 Sum_probs=29.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCee--ehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVV--DADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~i--d~D~i~~ 36 (197)
.+|+|+|++||||||+++.|++ + |++++ |.|.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 4799999999999999999997 4 99988 5565544
No 45
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.27 E-value=9.2e-12 Score=95.20 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=26.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCee-ehhHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVV-DADIIA 35 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~i-d~D~i~ 35 (197)
|++|+|+|++||||||+++.|++ +|++++ +.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g 41 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG 41 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhH
Confidence 46899999999999999999997 899998 655443
No 46
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.27 E-value=3.4e-12 Score=102.26 Aligned_cols=157 Identities=22% Similarity=0.208 Sum_probs=77.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCC---C---Cc---------c-
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP---N---GE---------V- 64 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~---~---~~---------~- 64 (197)
++|+|+|++||||||+++.|++ +|++++|.|.+.+ ..+..+.. .+.++.+++..... . +. .
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~-~a~~~g~~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL-ASEKSAVG-EQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH-HHHCC--------------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH-HHHHcCCC-HHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 4899999999999999999998 9999999665554 44433322 23444455432110 0 00 0
Q ss_pred chHHHHhHhcCCh-HHHHHHhhhhchhh-----HHHHH---HH--------HHHHHHhcchHhhhcCCCCHHHHHHHHHh
Q 029212 65 DRSKLGQIVFSDS-SKRQLLNGLLAPYI-----SLGIF---ME--------VLKLWIKGCKRLMARDRTSEEDARNRINA 127 (197)
Q Consensus 65 dr~~l~~~vf~~~-~~~~~l~~i~~p~i-----~~~~~---~~--------i~~~~~~~~~Rl~~R~~~s~e~i~~ri~~ 127 (197)
+...+.+.+|.-. +..+.+-. -.+.| -..+. .. +.+.++.+.+|++++.+.+.+++.+++..
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~-~~~~Vi~Grggg~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~ 171 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAE-SEPCIFVGRAAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKK 171 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HSCEEEESTTHHHHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh-CCCEEEEeCCcchhcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0000001111000 01111100 01111 01111 00 11223456678887778887777665544
Q ss_pred CCCc-cccc-----------CCCcEEEEcCC-CHHHHHHHHHHHHHH
Q 029212 128 QMPL-DIKR-----------NNADIVINNTG-TLDDLNEQVRKVLFE 161 (197)
Q Consensus 128 q~~~-~~~~-----------~~aD~vI~N~~-~~~~l~~~i~~ii~~ 161 (197)
.... ..++ ..+|++|+++. +++++.+.|...++.
T Consensus 172 ~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 172 IEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3221 1112 36899999997 889888888877764
No 47
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.26 E-value=1.3e-11 Score=98.74 Aligned_cols=52 Identities=21% Similarity=0.089 Sum_probs=41.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAA 52 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~ 52 (197)
|+.|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~ 68 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKAT 68 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHH
Confidence 56899999999999999999997 89999999999888655443333334333
No 48
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.26 E-value=5.7e-13 Score=104.50 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=32.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-C-CCCeeehhHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIAR 36 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D~i~~ 36 (197)
|.+|+|+|++||||||+++.|++ + ++.++++|.+.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 46899999999999999999998 5 899999997654
No 49
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.26 E-value=1.1e-12 Score=102.97 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=30.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC--CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND--VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G--~~~id~D~i~~ 36 (197)
.+|+|+|++||||||+++.|+. ++ +.+++.|...+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 5799999999999999999998 68 88999887543
No 50
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.24 E-value=8.4e-12 Score=98.86 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=36.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKG 42 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~ 42 (197)
|++|+|+|++||||||+++.|++ +|++++|+|++.++....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~ 47 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAG 47 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcC
Confidence 56799999999999999999997 8999999999888754433
No 51
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.21 E-value=2.4e-11 Score=97.93 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~ 39 (197)
++|+|+|++||||||+++.|++ +|++++|.|.+.+.+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 3799999999999999999997 8999999999987753
No 52
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=97.42 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CC---CCeeeh-hHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-ND---VPVVDA-DIIARDVL 39 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G---~~~id~-D~i~~~l~ 39 (197)
|++|+|||++||||+|+++.|.+ +| ++++++ |.+.++.+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a 54 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYA 54 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHH
Confidence 47999999999999999999997 75 778996 55554444
No 53
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.19 E-value=1.6e-11 Score=95.55 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=49.9
Q ss_pred HhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 104 IKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
+...+|+++|++.+.+++.+|+..+.+..++...+|++|+|+ +++++.+++.+++....
T Consensus 130 e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~~~~~~~l~~~i~~~~ 188 (205)
T 3tr0_A 130 EALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVND-NFDQAVQNLIHIISAER 188 (205)
T ss_dssp HHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGCSEEEECS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCEEEECC-CHHHHHHHHHHHHHHHH
Confidence 445679999988888899999999877666678899999999 99999999999997644
No 54
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.19 E-value=1.9e-12 Score=99.19 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=33.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
++|+|+|++||||||+++.|++ +|++++++|.+.++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 3689999999999999999997 899999999988765
No 55
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.18 E-value=4.3e-11 Score=94.66 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=39.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVV 50 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~ 50 (197)
+|.|.|+|||||+|.|+.|++ +|+++|+++++.|+....+......+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~ 50 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAK 50 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHH
Confidence 477999999999999999998 999999998888776665554444443
No 56
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.17 E-value=1.7e-11 Score=97.79 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=38.1
Q ss_pred hcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 105 KGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 105 ~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
...+|+++|++.+.+++.+|+..+.+..++...+|++|+|+ +++++.+++.+++......
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~-~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNE-DIEETADRISNILRAEQMK 212 (231)
T ss_dssp HHHHC--------------CHHHHHHHHTTGGGSSEEEECS-SHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECc-CHHHHHHHHHHHHHHHhhc
Confidence 34568999988899999999999987766777899999999 7999999999999876543
No 57
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.16 E-value=2.5e-11 Score=96.86 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=84.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhcccccCCCCccchHHHHhHhcC--ChH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS--DSS 78 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~vf~--~~~ 78 (197)
++|.|.|+|||||||.|+.|++ +|+++|+++++.|+....+.+....+.+..-..-+.+|..+ -..+.+.+.. +..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~-~~lv~~~l~~~~~~~ 108 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV-LALLKEAMIKLVDKN 108 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHH-HHHHHHHHhhccccc
Confidence 5789999999999999999997 99999999888887766665544444433321112111100 0111111000 000
Q ss_pred HHHHHhhhhchhhHHHHHH---HH---------HHHHHhcchHhhhcC------CCCHHHHHHHHHhC----CCcccccC
Q 029212 79 KRQLLNGLLAPYISLGIFM---EV---------LKLWIKGCKRLMARD------RTSEEDARNRINAQ----MPLDIKRN 136 (197)
Q Consensus 79 ~~~~l~~i~~p~i~~~~~~---~i---------~~~~~~~~~Rl~~R~------~~s~e~i~~ri~~q----~~~~~~~~ 136 (197)
.--.++. .|.-...... .+ ....+...+|+..|. ..++|.+.+|+... .|..++++
T Consensus 109 ~g~ilDG--fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~ 186 (217)
T 3umf_A 109 CHFLIDG--YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYK 186 (217)
T ss_dssp SEEEEET--BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCccccc--CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 2322211100 00 011223455776663 13456777777543 23333444
Q ss_pred CCc--EEEEcCCCHHHHHHHHHHHHHHH
Q 029212 137 NAD--IVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 137 ~aD--~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
... +.||.+++++++.++|.+.++++
T Consensus 187 ~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 187 QQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp TTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 333 45788889999999999988764
No 58
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.15 E-value=2.5e-11 Score=94.87 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=39.8
Q ss_pred hcchHhhhc-CCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 105 KGCKRLMAR-DRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 105 ~~~~Rl~~R-~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
...+|+.+| +..+.+++.+++..+...... ..++++|+|+++++++.++|.+++..+
T Consensus 143 ~~~~Rl~~r~~r~~~~~~~~~~~~~~~~~~~-~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 143 YAQNRSDYGEEIYEKVETQKKIYETYKHFAH-EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp GGGGSTTTTSSTTCSHHHHHHHHHHGGGGTT-CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHhhccCcccccHHHHHHHHHHHHHHHhc-cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 345687655 334446777777666443222 457899999999999999999888655
No 59
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.13 E-value=2.5e-12 Score=99.54 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=20.9
Q ss_pred HhcchHhhhcCCCCHHHHHHHHHhCCCccccc--CCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 104 IKGCKRLMARDRTSEEDARNRINAQMPLDIKR--NNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~--~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
+...+|+++|+..+.+++++|+..+..+.++. ..+|++|.|+ +++++.+++..++.
T Consensus 126 ~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd-~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 126 EDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVND-DLDKAYKELKDFIF 183 (186)
T ss_dssp ---------------------------------CCCCSEEEECS-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEECc-CHHHHHHHHHHHHH
Confidence 34567999997778888999998887654444 6799999999 88999999888774
No 60
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.13 E-value=7.4e-11 Score=92.35 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHhcchHhhhcCCCCHHHHHHHHHhCC-Cccc-ccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 102 LWIKGCKRLMARDRTSEEDARNRINAQM-PLDI-KRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 102 ~~~~~~~Rl~~R~~~s~e~i~~ri~~q~-~~~~-~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
..+...+|+.+|+..+.+++.+|+.... +... +...+|++|+|+ ++++..+++.+++....
T Consensus 136 s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 136 SIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp CHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECS-SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhccCcEEEECc-CHHHHHHHHHHHHHHHh
Confidence 3445667998886667888888877653 2211 456799999998 89999999999887644
No 61
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.13 E-value=5.9e-11 Score=96.65 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=33.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCCee--ehhHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPVV--DADIIARDV 38 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~~i--d~D~i~~~l 38 (197)
|++|.|+|+|||||||+++.|++ .|++++ +.|.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l 47 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF 47 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH
Confidence 57899999999999999999985 799988 899887554
No 62
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=1.2e-10 Score=91.71 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=43.1
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
.+...+|+.+|+..+.+++.+|+..+.....+...+|++|.|+ +++++.+++..++..-..
T Consensus 131 ~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~~d~vivN~-~~~~~~~~l~~~i~~~~~ 191 (208)
T 3tau_A 131 LSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVND-VVANAVQKIKGIVETEHL 191 (208)
T ss_dssp TTTSSCC-------CCHHHHHHHHHHHHHHHHGGGSSEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccCCEEEECc-CHHHHHHHHHHHHHHHHH
Confidence 3456679999977888999999988865545667899999998 799999999999876543
No 63
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.09 E-value=2.2e-11 Score=92.75 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=31.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~~l 38 (197)
++|.|+|+|||||||+++.|++ ++.++++ .|.+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~ 43 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc
Confidence 4799999999999999999997 8877664 89887653
No 64
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.03 E-value=1.2e-11 Score=95.90 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=39.0
Q ss_pred HhcchHhhhcCCCCHH-----HHHHHHHhCCCc-cccc--CCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 104 IKGCKRLMARDRTSEE-----DARNRINAQMPL-DIKR--NNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e-----~i~~ri~~q~~~-~~~~--~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
+...+|+.+| +.+.+ +..+++..+... .+.+ ..++++|+|+++++++.++|.+.+..+..
T Consensus 136 e~~~~Rl~~R-~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~~ 203 (205)
T 2jaq_A 136 KTAISRIKKR-GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIKN 203 (205)
T ss_dssp HHHHHHHHHH-TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHc-CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 4456688777 33332 344556555432 2223 56899999999999999999998876543
No 65
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.00 E-value=1.7e-10 Score=92.94 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred HhhhcC---CCCHHHHHHHHHhCC--Cc----ccccCCCcEEE----EcCCCHHHHHHHHHHHHHH
Q 029212 109 RLMARD---RTSEEDARNRINAQM--PL----DIKRNNADIVI----NNTGTLDDLNEQVRKVLFE 161 (197)
Q Consensus 109 Rl~~R~---~~s~e~i~~ri~~q~--~~----~~~~~~aD~vI----~N~~~~~~l~~~i~~ii~~ 161 (197)
|...|+ |.+.+++.+++..+. +. .+..+.||+|| +|+++++++.+++.++++.
T Consensus 170 r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 170 RRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 444443 789999998887663 22 24567899999 7766889999999888764
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.99 E-value=2.5e-10 Score=89.23 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=33.3
Q ss_pred hcchHhhhc-CCCCHHHHHHHHHhCCCcc-cccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 105 KGCKRLMAR-DRTSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 105 ~~~~Rl~~R-~~~s~e~i~~ri~~q~~~~-~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
...+|+..| +..+.+++.+++..+.... .......++|+|+++++++.++|.+++..+..
T Consensus 142 ~~~~Rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 142 DAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp HHHHC-----CTTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 345577543 2333345555655543221 11112337889988999999999988876543
No 67
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.98 E-value=5.1e-10 Score=88.39 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=42.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
|++|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~ 57 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIM 57 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHH
Confidence 56899999999999999999998 899999999999876554444444444444
No 68
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.98 E-value=1.4e-11 Score=96.53 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=41.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCCee--ehhHHHHHH---hccCCchHHHHHHHhcccccCCCCccchHHHHhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVV--DADIIARDV---LKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI 72 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~~i--d~D~i~~~l---~~~~~~~~~~i~~~~G~~~~~~~~~~dr~~l~~~ 72 (197)
.+|+|+|++||||||+++.|+. .|..++ +.|...+.. ...+... |.+++ ++.+|+..+++.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~--------~~~~~--~~~~d~~~l~~~ 92 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEE--------WFEYY--YLQWDVEWLTHQ 92 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCH--------HHHHH--HTSSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCC--------ccCCC--ccccCHHHHHHH
Confidence 5799999999999999999985 366544 557654432 2222211 11222 235677777777
Q ss_pred hcCC
Q 029212 73 VFSD 76 (197)
Q Consensus 73 vf~~ 76 (197)
+|.+
T Consensus 93 v~~~ 96 (201)
T 1rz3_A 93 LFRQ 96 (201)
T ss_dssp TGGG
T ss_pred HHHH
Confidence 7654
No 69
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.94 E-value=6.8e-10 Score=87.71 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=37.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKG 42 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~ 42 (197)
|+.|+|+|++||||||+++.|++ +|++++++|++.++....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~ 47 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNG 47 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcC
Confidence 57899999999999999999998 8999999999998765543
No 70
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.92 E-value=1.3e-09 Score=86.58 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=41.0
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
|++|+|+|++||||||+++.|++ +|++++|+|++.++....+......+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~ 60 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFI 60 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHH
Confidence 46899999999999999999997 999999999988876544433333333333
No 71
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.91 E-value=1.7e-09 Score=84.12 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCC--Ceee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDV--PVVD 30 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~--~~id 30 (197)
++|+|+|++||||||+++.|++ ++. .++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 4899999999999999999997 665 3655
No 72
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.91 E-value=9.1e-10 Score=86.65 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=36.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGT 43 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~ 43 (197)
.|+|+|++||||||+++.|++ +|++++++|++.++.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~ 43 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGS 43 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCC
Confidence 489999999999999999998 89999999999988655443
No 73
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.85 E-value=2.8e-09 Score=84.66 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=40.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAF 53 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~ 53 (197)
+|+|+|++||||||+++.|++ +|++++++|++.++....+......+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~ 53 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFI 53 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHH
Confidence 589999999999999999997 899999999999887544443444444444
No 74
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.84 E-value=4.6e-09 Score=81.33 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-CCCeeehh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPVVDAD 32 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id~D 32 (197)
++|+|+|++||||||+++.|++ + |+++++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4799999999999999999998 5 79888865
No 75
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.82 E-value=1.8e-10 Score=96.18 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=27.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-------CCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-------~~~id~D~i 34 (197)
.+|||+|++||||||+++.|+. ++ +.++++|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4799999999999999999986 44 567777754
No 76
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.79 E-value=8.4e-10 Score=86.02 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=31.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCC--eeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVP--VVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~--~id~D~i~~~l 38 (197)
.+|+|+|++||||||+++.|+. + |.. ++|.|.+.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh
Confidence 4799999999999999999986 5 777 89999876543
No 77
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.78 E-value=7e-09 Score=83.27 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=43.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHhccCCchHHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFG 54 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~~~~~~~~~~i~~~~G 54 (197)
+..||+|+|||||||+|+.|++ +|+++|++|++.++....+.+....+.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~ 62 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD 62 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh
Confidence 3589999999999999999997 9999999999988876666655556655553
No 78
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.78 E-value=5.2e-09 Score=80.24 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=34.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l~ 39 (197)
++|.|+|+|||||||+++.|++ +|+++++.|.+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~ 44 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMF 44 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHH
Confidence 5799999999999999999997 8999999999987654
No 79
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.76 E-value=4.2e-09 Score=80.50 Aligned_cols=39 Identities=26% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-----CCeeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-----VPVVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-----~~~id~D~i~~~l~~ 40 (197)
++|+|+|++||||||+++.|++ +| +++++.|++.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~ 48 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 48 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence 4899999999999999999997 77 999999988877643
No 80
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.75 E-value=6.1e-09 Score=78.84 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=35.3
Q ss_pred CE-EEEEEcCCcCcHHHHHHHHHh--CCCCeeehhHHHHHHhc
Q 029212 1 MR-IVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIARDVLK 40 (197)
Q Consensus 1 m~-~I~ltG~~GSGKSTv~~~L~~--~G~~~id~D~i~~~l~~ 40 (197)
|+ +|+|+|+|||||||+++.|++ +|+.++++|.+.+.+..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~ 43 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA 43 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC
Confidence 53 799999999999999999996 79999999998877653
No 81
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.72 E-value=8.3e-09 Score=82.55 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHhcchHhhhcC----CCC--HHHHHHHHHhCCCc-ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 103 WIKGCKRLMARD----RTS--EEDARNRINAQMPL-DIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 103 ~~~~~~Rl~~R~----~~s--~e~i~~ri~~q~~~-~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
.+...+|+.+|+ ... .+++.+++...... ...+...-++||++++++++.++|.+.+..+..
T Consensus 159 ~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 159 AEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 344567888873 222 33455555443211 111222346789999999999999999887654
No 82
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.70 E-value=7.2e-09 Score=79.21 Aligned_cols=39 Identities=28% Similarity=0.182 Sum_probs=33.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CC-----CCeeehhHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-ND-----VPVVDADIIARDVL 39 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G-----~~~id~D~i~~~l~ 39 (197)
|++|+|+|++||||||+++.|++ ++ +.+++.|+...+..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 88999999999999999999997 66 78888887766544
No 83
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.69 E-value=2.2e-08 Score=77.90 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=42.2
Q ss_pred HHhcchHhhhcCCCCHHHHHHHHHhCCCccc--ccCCCcEEEEcCCCHHHHHHHHHHHHH
Q 029212 103 WIKGCKRLMARDRTSEEDARNRINAQMPLDI--KRNNADIVINNTGTLDDLNEQVRKVLF 160 (197)
Q Consensus 103 ~~~~~~Rl~~R~~~s~e~i~~ri~~q~~~~~--~~~~aD~vI~N~~~~~~l~~~i~~ii~ 160 (197)
.+...+||.+|+..+.+++.+|+.....+.. +....|++|.|+ ++++..+++..++.
T Consensus 125 ~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNd-dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 125 VEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVND-DLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECS-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCcEEEECc-CHHHHHHHHHHHHH
Confidence 4456679999977889999999876532211 223579999998 78988888888764
No 84
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.64 E-value=1.1e-08 Score=82.91 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIA 35 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~ 35 (197)
|++|+|+|++||||||+++.|++ +|++++++|.+.
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 88999999999999999999997 899999999864
No 85
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.57 E-value=1.7e-08 Score=90.50 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=31.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-----CCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-----VPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-----~~~id~D~i~~~l 38 (197)
.+|+++|++||||||+++.|++ ++ +.++|.|.+.+.+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l 415 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL 415 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh
Confidence 4799999999999999999986 54 3788999887665
No 86
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.56 E-value=3.8e-08 Score=76.70 Aligned_cols=56 Identities=27% Similarity=0.231 Sum_probs=41.8
Q ss_pred cchHhhhcCCCCHHHHHHHHHhCCCccccc---CCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 106 GCKRLMARDRTSEEDARNRINAQMPLDIKR---NNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 106 ~~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~---~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.-+|+..|+..+.+++++++.......... ..+|++|.|+ +++++.+++..++...
T Consensus 130 lde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd-~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 130 LEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIIND-DLDKAYATLKQALSEE 188 (198)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECS-SHHHHHHHHHHHTHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECC-CHHHHHHHHHHHHHHH
Confidence 346888888889999988876543221112 5799999999 7999999999988654
No 87
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.47 E-value=1e-07 Score=78.35 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=34.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh--CCCCeeehhHHHHHHhc
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIARDVLK 40 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~--~G~~~id~D~i~~~l~~ 40 (197)
.++|.|+|++||||||+++.|++ .|++++++|.+.+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~ 43 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA 43 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc
Confidence 04799999999999999999997 49999999987776653
No 88
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.44 E-value=1.3e-07 Score=75.69 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=33.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i~~~l 38 (197)
.+|+|+|++||||||+++.|++ +|+..++.|.+..+-
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 5799999999999999999997 899999998887653
No 89
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.40 E-value=3.2e-08 Score=81.93 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=28.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-----CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-----VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-----~~~id~D~i~~ 36 (197)
.+|+|+|++||||||+++.|++ +| ++++++|.+.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4799999999999999999997 77 78999999875
No 90
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.35 E-value=1.3e-06 Score=69.35 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=41.5
Q ss_pred chHhhhcCCCCHHHHHHHHHhCCCcccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 107 CKRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~~~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
..|++.|+..+.+++.+|+........+...+|++|.|+ ++++..+++..++..-.
T Consensus 144 ~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~i~Nd-~l~~a~~~l~~ii~~~~ 199 (219)
T 1s96_A 144 DRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVND-DFDTALTDLKTIIRAER 199 (219)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEEEECS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEEEECc-CHHHHHHHHHHHHHHHH
Confidence 348888865788999988875422222345689999997 89999999999987543
No 91
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.33 E-value=3.6e-07 Score=73.70 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=30.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC--CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND--VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G--~~~id~D~i~~ 36 (197)
.+|+|+|+|||||||+++.|++ ++ +.++|.|.+.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 5799999999999999999997 65 67889998754
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.33 E-value=4.6e-07 Score=69.28 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=29.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC--eeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP--VVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~--~id~D~i~~~ 37 (197)
.+|+|+|++||||||+++.|+. .+.. +++.|++.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~ 48 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 48 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence 3799999999999999999997 4444 7888887653
No 93
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.31 E-value=3.1e-07 Score=72.66 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=36.5
Q ss_pred HhcchHhhhcCC---CCH--HHHHHHHHhCCC-cccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 104 IKGCKRLMARDR---TSE--EDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 104 ~~~~~Rl~~R~~---~s~--e~i~~ri~~q~~-~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
+...+|+.+|++ ... .++.+++..+.. ........-.+||++++++++.++|.+.+..+..
T Consensus 143 e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 143 EIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp HHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 445678888743 211 244455444321 1112222346889999999999999988876543
No 94
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.31 E-value=4.3e-07 Score=74.89 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=31.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C--CCCeeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N--DVPVVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~--G~~~id~D~i~~~ 37 (197)
.+|.|+|+|||||||+++.|++ + ++.+||+|.+...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 5789999999999999999986 6 8899999987643
No 95
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.30 E-value=7.6e-08 Score=76.61 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=23.7
Q ss_pred HhcchHhhhcCCCCHH-----HHHHHHHhCCCcc--cc--cCCCc-EEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 104 IKGCKRLMARDRTSEE-----DARNRINAQMPLD--IK--RNNAD-IVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~e-----~i~~ri~~q~~~~--~~--~~~aD-~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
+...+|+.+|+. +.| ++.+++..+.... .+ ...++ ++||++++++++.++|.++++.+..
T Consensus 158 e~~~~Ri~~R~r-~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 158 EVAYERIRQRAR-SEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFD 227 (230)
T ss_dssp HHHHHHHHHHCC-GGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC------------------
T ss_pred HHHHHHHHHcCC-cccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 345678887732 211 4566666654331 22 23455 7899999999999999988876543
No 96
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.24 E-value=9.8e-08 Score=81.14 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=45.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCe--------------------eehhHHHHHHhccCCchHHHHHHHhcccccC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPV--------------------VDADIIARDVLKKGTGGWKKVVAAFGEDILL 59 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~--------------------id~D~i~~~l~~~~~~~~~~i~~~~G~~~~~ 59 (197)
..|+|+|+|||||||+++.|++ +++++ +|+|..+.+. .+..+.+|++..|+ .|+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~---~g~~i~~if~~~ge-~fr 99 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTL---QPNKVAEMIENQGL-FKD 99 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEEC---CHHHHHHHHHTTTC-CGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHH---hCccHHHHHHHhcc-cch
Confidence 3589999999999999999997 88888 8888766554 35678889999998 666
No 97
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.23 E-value=3.1e-07 Score=73.88 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=35.0
Q ss_pred HhcchHhhhcCC---CC--HHHHHHHHHhCCC-cccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 104 IKGCKRLMARDR---TS--EEDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 104 ~~~~~Rl~~R~~---~s--~e~i~~ri~~q~~-~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
+...+|+.+|++ .. ..++.+++..+.. ..+.... ..+||++++++++.++|.+++..+...
T Consensus 166 e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~~-~~vIDa~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 166 KLGLERARGRGELDRIEKMDISFFERARERYLELANSDDS-VVMIDAAQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp HHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCTT-EEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCCC-EEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 445668887742 21 1345555554422 1111222 578999999999999999999877654
No 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.21 E-value=1e-06 Score=67.38 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=29.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-CCeeehhHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-VPVVDADIIAR 36 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-~~~id~D~i~~ 36 (197)
.+|+|+|++||||||+++.|+. .+ ..+++.|.+.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4789999999999999999996 54 47899988764
No 99
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.20 E-value=6e-07 Score=75.89 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=30.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
+|+|+|++||||||++..|++ ++..+|++|.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 799999999999999999997 89999999976
No 100
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.18 E-value=4.2e-07 Score=72.74 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=34.9
Q ss_pred HhcchHhhhcCC---CCH--HHHHHHHHhCCC-cccccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 104 IKGCKRLMARDR---TSE--EDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 104 ~~~~~Rl~~R~~---~s~--e~i~~ri~~q~~-~~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
+...+|+.+|++ ... .++.+++..... ..+.....-.+||++.+++++.++|.+.+..|
T Consensus 163 e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 163 QIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAAL 227 (227)
T ss_dssp SCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 345679888742 221 244455444321 11112223468899999999999998887753
No 101
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.18 E-value=6e-07 Score=77.74 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=30.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
.+|.|+|+|||||||+++.|++ +|+.++|.|.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4789999999999999999987 89999999986
No 102
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.16 E-value=6.8e-07 Score=68.35 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=29.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CC--CeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DV--PVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~--~~id~D~i~~~l 38 (197)
.+|+|+|++||||||+++.|++ + |. .+++.|.+...+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~ 56 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV 56 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH
Confidence 4799999999999999999985 3 43 467888875443
No 103
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.15 E-value=8.3e-07 Score=74.53 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=30.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
++|+|+|++||||||++..|++ +|..+||+|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 3799999999999999999997 89999999975
No 104
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.15 E-value=2.6e-07 Score=73.76 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=27.8
Q ss_pred HhcchHhhhcCCCCH--HHHHHHHHhCCCc-ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHh
Q 029212 104 IKGCKRLMARDRTSE--EDARNRINAQMPL-DIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 163 (197)
Q Consensus 104 ~~~~~Rl~~R~~~s~--e~i~~ri~~q~~~-~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~ 163 (197)
+...+|+ +|+.... .+..+++..+... .+......++||++++++++ ++|.+.+..+.
T Consensus 157 e~~~~Ri-~rdr~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 157 NESLSRS-CKNGYEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred HHHHHHh-ccCccccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 3455677 5555433 3455566555322 11223345789999999988 88888877543
No 105
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.10 E-value=8.4e-07 Score=69.39 Aligned_cols=36 Identities=31% Similarity=0.183 Sum_probs=29.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC------CCeeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND------VPVVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G------~~~id~D~i~~~ 37 (197)
++|+|+|++||||||+++.|++ ++ +.++|.|.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~ 68 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 68 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhh
Confidence 5799999999999999999986 54 677888877543
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.09 E-value=1.4e-06 Score=73.59 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
++|+|+|++||||||++..|++ +|..+||+|.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3799999999999999999998 89999999976
No 107
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.04 E-value=5.3e-06 Score=64.89 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=28.5
Q ss_pred cCCCcEEEEcCCCHHHHHHHHHHHHHHHhcCCCc
Q 029212 135 RNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNW 168 (197)
Q Consensus 135 ~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~~~~ 168 (197)
....|++|.|| ++++..+++..++..+...+-|
T Consensus 164 ~~~fd~vivNd-~l~~a~~~l~~ii~~~~~~pqW 196 (197)
T 3ney_A 164 AHYFDLSLVNN-GVDETLKKLQEAFDQACSSPQW 196 (197)
T ss_dssp GGGCSEEEEES-CHHHHHHHHHHHHHHCCCCCC-
T ss_pred ccCCCEEEECC-CHHHHHHHHHHHHHHccCCCCC
Confidence 34689999999 7999999999999999988888
No 108
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.01 E-value=5.7e-06 Score=64.93 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=24.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C--CCCeee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N--DVPVVD 30 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~--G~~~id 30 (197)
+.|++=|..||||||.++.|++ + |++++-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 5799999999999999999986 3 777663
No 109
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.96 E-value=2.9e-06 Score=66.14 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~~id 30 (197)
.|++-|..||||||.++.|++ .|.+++-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 588999999999999988864 5888764
No 110
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.93 E-value=4.2e-06 Score=66.15 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=36.1
Q ss_pred HhcchHhhhcCC---CC--HHHHHHHHHhCCCc-ccccCCCcEEEEcCCCHHHHHHHHHHHHHHHhcC
Q 029212 104 IKGCKRLMARDR---TS--EEDARNRINAQMPL-DIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 165 (197)
Q Consensus 104 ~~~~~Rl~~R~~---~s--~e~i~~ri~~q~~~-~~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~~ 165 (197)
+...+|+.+|++ .. ..++.+++...... .+. ...-.+||++++++++.++|.+.+..+...
T Consensus 144 e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~-~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 144 EVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQ-DKSIHTIDATQPLEAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp HHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHT-CTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHH-CCcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 345668887743 11 12344444433211 111 122367899999999999999998876544
No 111
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.92 E-value=3.7e-06 Score=74.89 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=32.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC-----eeehhHHHHHHhc
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP-----VVDADIIARDVLK 40 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~-----~id~D~i~~~l~~ 40 (197)
.+|.++|.|||||||+++.|++ +|+. +++.|++++++..
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~ 80 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 80 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhcc
Confidence 4789999999999999999986 5433 4788999888764
No 112
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.89 E-value=7.7e-06 Score=61.96 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDV 38 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~~~l 38 (197)
+++|+|++||||||+++.+. .|..+++.|.+...+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~-~~~~~~~~d~~~g~~ 45 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF-KPTEVISSDFCRGLM 45 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS-CGGGEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc-cCCeEEccHHHHHHh
Confidence 68999999999999999865 477788888776443
No 113
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.88 E-value=4e-06 Score=74.45 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=28.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCC-------CeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDV-------PVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~-------~~id~D~ 33 (197)
.+|.++|.+||||||+++.|++ ++. .++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4799999999999999999997 775 6888886
No 114
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.85 E-value=7.2e-06 Score=74.50 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=27.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C---CCCeeehh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDAD 32 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~---G~~~id~D 32 (197)
++|.|+|.+||||||+++.|++ + |+++++.|
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4799999999999999999997 6 99987764
No 115
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.81 E-value=9.1e-06 Score=67.98 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=30.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
++|+|+|++||||||++..|++ ++..+|++|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4789999999999999999997 89999999964
No 116
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.78 E-value=1e-05 Score=72.83 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=30.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC----C--CeeehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND----V--PVVDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G----~--~~id~D~i~~~l 38 (197)
++|.|+|++||||||+++.|++ ++ . .++|.|.+.+.+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 5799999999999999999996 54 4 466778776654
No 117
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.78 E-value=1.2e-05 Score=67.24 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
++|+|+|++||||||++..|++ ++..+|++|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3689999999999999999997 8999999986
No 118
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.77 E-value=1.2e-05 Score=67.48 Aligned_cols=33 Identities=39% Similarity=0.613 Sum_probs=26.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CC-------CCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G-------~~~id~D~i 34 (197)
.+|||+|++||||||+++.|.. ++ ..+++.|..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4799999999999999999985 32 445777764
No 119
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.76 E-value=1.5e-05 Score=62.53 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=29.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhCCCCeeehhHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i 34 (197)
+.|.|+|++||||||++..|++.|..+|+.|.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~ 67 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHRLIADDRV 67 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCEEEESSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCeEEecchh
Confidence 458999999999999999999988899988853
No 120
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.72 E-value=1e-05 Score=65.30 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=26.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh-C-CCCeee
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA-N-DVPVVD 30 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~-~-G~~~id 30 (197)
|++|+|.|.+||||||+++.|++ + ++.++.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 46899999999999999999997 6 776664
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.67 E-value=2.3e-05 Score=59.72 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=33.1
Q ss_pred chHhhhcCCCCHHHHHHHHHhCC-Ccc-cccCCCcEEEEcCCCHHHHHHHHHHHHHHH
Q 029212 107 CKRLMARDRTSEEDARNRINAQM-PLD-IKRNNADIVINNTGTLDDLNEQVRKVLFEI 162 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~-~~~-~~~~~aD~vI~N~~~~~~l~~~i~~ii~~l 162 (197)
.+++.+| .+.+ +|+.... +.. .+...+|++|.|+ ++++..+++..++..+
T Consensus 128 ~~~l~~R----~~~i-~r~~~~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 128 ITPGLNE----DESL-QRLQKESDILQRTYAHYFDLTIINN-EIDETIRHLEEAVELV 179 (180)
T ss_dssp CCTTSCC----SHHH-HHHHHHHHHHHHHHGGGCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----HHHH-HHHHHHHHHHHHhhhCCCcEEEECc-CHHHHHHHHHHHHHHh
Confidence 3455555 3555 4554432 211 2456799999999 7999999999988764
No 122
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.65 E-value=2.4e-05 Score=60.91 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.3
Q ss_pred cchHhhhc---CCCCHHHHHHHHHh-CCC----cccccCCCcEEEEc
Q 029212 106 GCKRLMAR---DRTSEEDARNRINA-QMP----LDIKRNNADIVINN 144 (197)
Q Consensus 106 ~~~Rl~~R---~~~s~e~i~~ri~~-q~~----~~~~~~~aD~vI~N 144 (197)
+..|+.+| +|.+.+++..++.. |.+ .+++...||+||++
T Consensus 161 ~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 161 LEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 34566666 38899999999985 777 56677889999975
No 123
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.64 E-value=2.5e-05 Score=59.79 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP 27 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~ 27 (197)
+.++|+|++||||||+.+.++. +++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3589999999999999999986 5543
No 124
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.64 E-value=1.5e-05 Score=71.47 Aligned_cols=36 Identities=36% Similarity=0.436 Sum_probs=29.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C----C--CCeeehhHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N----D--VPVVDADIIARD 37 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~----G--~~~id~D~i~~~ 37 (197)
.+|+|+|++||||||+++.|+. + | +.++|.|.+.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~ 412 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH 412 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh
Confidence 3689999999999999999985 3 3 456899988754
No 125
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.60 E-value=2.1e-05 Score=67.89 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~ 33 (197)
++|+|+|++||||||++..|++ ++..+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 5799999999999999999997 8888999886
No 126
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.57 E-value=2e-05 Score=61.01 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
++|+|+|++||||||+++.|++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999985
No 127
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.56 E-value=1.7e-05 Score=69.50 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCC-----eeehhHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVP-----VVDADIIARDVL 39 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~-----~id~D~i~~~l~ 39 (197)
.+|.++|.|||||||+++.|++ +++. .++.|.+.++..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~ 83 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV 83 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc
Confidence 3689999999999999999986 5443 455566766654
No 128
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=6.8e-05 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-C-CCCe
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPV 28 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~-G~~~ 28 (197)
++|++.|.+||||||+++.|++ + ++.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 5799999999999999999997 6 6543
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.44 E-value=4.4e-05 Score=58.20 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|.+|+|+|++||||||+++.|..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 130
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.43 E-value=0.00025 Score=58.32 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=33.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHHHHhccCCchHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIARDVLKKGTGGWKKVV 50 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~~l~~~~~~~~~~i~ 50 (197)
.|.|+|++||||||+++.+++ .+.+++. +..+..............++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f 101 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 101 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHH
Confidence 488999999999999999997 7777654 55555555433333334443
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.43 E-value=7.5e-05 Score=57.99 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 132
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.41 E-value=7.7e-05 Score=62.15 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|||+|++||||||+++.|+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 3799999999999999999974
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.40 E-value=8.9e-05 Score=61.14 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=20.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+|+|++||||||+++.|+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=0.00014 Score=54.92 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=27.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-----CCCC--eeehhHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-----NDVP--VVDADIIARDV 38 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-----~G~~--~id~D~i~~~l 38 (197)
.++|+|++||||||+++.++. .|.. +++++++...+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 589999999999999998863 3644 56666665543
No 135
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=7.3e-05 Score=59.74 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|+|++||||||+++.+++ .+.+++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 478999999999999999997 77776654
No 136
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00012 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=22.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh----CCCC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA----NDVP 27 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~----~G~~ 27 (197)
|++|+|+|++||||||++..|.. .|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~ 34 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWR 34 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCe
Confidence 67899999999999999988863 4665
No 137
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.34 E-value=0.00012 Score=56.21 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=28.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIA 35 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~ 35 (197)
-|.++|.+|+||||++-.|.+.|+.+++-|.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~ 50 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGHQLVCDDVID 50 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTCEEEESSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEE
Confidence 378999999999999999999999888766543
No 138
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.33 E-value=0.00012 Score=54.99 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|.|++||||||+.+.++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.00011 Score=59.97 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
++|+|++||||||+++.++. .+..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 78999999999999999996 7765554
No 140
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.32 E-value=0.00011 Score=61.12 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~ 22 (197)
|.+++|||+.||||||+.+.|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 3588999999999999999998
No 141
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=0.00011 Score=58.75 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999985
No 142
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.31 E-value=9.9e-05 Score=58.02 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=41.0
Q ss_pred chHhhhcCCCCHHHHHHHHHhCCCcccc--cCCCcEEEEcCCCHHHHHHHHHHHHHHHhc
Q 029212 107 CKRLMARDRTSEEDARNRINAQMPLDIK--RNNADIVINNTGTLDDLNEQVRKVLFEIKR 164 (197)
Q Consensus 107 ~~Rl~~R~~~s~e~i~~ri~~q~~~~~~--~~~aD~vI~N~~~~~~l~~~i~~ii~~l~~ 164 (197)
-+|+..++..+.+.+.+++....+.... ...+|.+|.|+ ++++..+.++.++.....
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~~~~ii~~~~~ 210 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQLKNYLLNSYI 210 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHHHHHHHHHHHH
Confidence 3477788777888888877654222111 25799999998 789999999999876544
No 143
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.28 E-value=0.00011 Score=58.09 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 144
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.27 E-value=0.0001 Score=60.52 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.+.|.|+||+|||++++.+++ +|.+++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 577899999999999999997 78876653
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.26 E-value=0.00015 Score=57.10 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||+++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999876
No 146
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.25 E-value=0.00015 Score=58.07 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999985
No 147
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.23 E-value=0.00018 Score=54.91 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~ 22 (197)
|.+|+|+|++||||||+.+.|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999998876
No 148
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.22 E-value=0.00015 Score=59.32 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 149
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.21 E-value=0.0002 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
++|+|++||||||+++.++. .+.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 78999999999999999986 5555444
No 150
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.21 E-value=0.00019 Score=60.46 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=26.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
.|.++|++|+|||++++.+++ ++.+++..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 478999999999999999997 898888654
No 151
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.21 E-value=0.00017 Score=57.68 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999974
No 152
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.20 E-value=0.00016 Score=58.81 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 153
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.20 E-value=0.00017 Score=57.72 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 154
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.20 E-value=0.00019 Score=55.83 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+++.++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 155
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.00017 Score=58.44 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 156
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.18 E-value=0.00018 Score=58.15 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.18 E-value=0.00019 Score=57.02 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
-|.|+|++|+||||+++.+++ .+.+++.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999997 7877664
No 158
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.18 E-value=0.00015 Score=56.85 Aligned_cols=21 Identities=29% Similarity=0.139 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 159
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.18 E-value=0.00021 Score=57.51 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
+++|+|++||||||+.+.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999853
No 160
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.17 E-value=0.00023 Score=54.76 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEcCCcCcHHHHHHHHHhCCCCe
Q 029212 4 VGLTGGISSGKSTVSNLFKANDVPV 28 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~~G~~~ 28 (197)
|.|+|++||||||++..|+..|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCe
Confidence 7899999999999999998546553
No 161
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.17 E-value=0.00019 Score=57.47 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 162
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.16 E-value=0.00019 Score=57.68 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 163
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.16 E-value=0.00019 Score=58.32 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 689999999999999999985
No 164
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.15 E-value=0.0002 Score=56.87 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 165
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.15 E-value=0.0002 Score=57.96 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 166
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00016 Score=56.95 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 167
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.14 E-value=0.00024 Score=62.04 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=27.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
.|.++|+||+||||+++.|++ +|++++..|
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 488999999999999999997 899988755
No 168
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.13 E-value=0.00028 Score=57.42 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|.|+|++|+||||+++.+++ .+.+++.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 588999999999999999997 8877654
No 169
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.13 E-value=0.0002 Score=55.28 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+.+.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999985
No 170
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.13 E-value=0.00024 Score=57.78 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
+++|+|++||||||+.+.++.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999863
No 171
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.13 E-value=0.00025 Score=59.89 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D 32 (197)
.|.++|++|+||||+++.+++ +|.+++..|
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 478999999999999999997 888877644
No 172
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00022 Score=57.44 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 173
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.11 E-value=0.00023 Score=58.01 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.11 E-value=0.00031 Score=56.72 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=24.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.+.|+|++|+||||+++.+++ .+.+++.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999997 8887665
No 175
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.10 E-value=0.00024 Score=57.69 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 176
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.10 E-value=0.00024 Score=58.24 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 177
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.09 E-value=0.00025 Score=57.47 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 178
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.08 E-value=0.00032 Score=56.81 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
|+|+|++||||||+++.++. .+.+++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 78999999999999999986 5555444
No 179
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.08 E-value=0.00047 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=22.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHhC
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
|+.|+++|.+|+||||+.+.|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999863
No 180
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.08 E-value=0.00026 Score=57.14 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 181
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.07 E-value=0.0003 Score=57.06 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999998863
No 182
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00023 Score=61.90 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.5
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
|.+.|+||||||++++.+|. .|++++..
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 78999999999999999997 89887764
No 183
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.04 E-value=0.0003 Score=58.76 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCe
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPV 28 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~ 28 (197)
.++|+|++||||||+++.++. .|.++
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 478999999999999999996 66543
No 184
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.02 E-value=0.00035 Score=58.04 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+++.|..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999986
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.00 E-value=0.00047 Score=55.50 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.+.|+|++|+|||++++.+++ .|.+++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 578999999999999999997 78886643
No 186
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00026 Score=61.62 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=25.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
=|.+.|+||||||++++.++. .|++++..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 478999999999999999997 89887764
No 187
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00034 Score=56.85 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999985
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.99 E-value=0.00073 Score=51.71 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCCe--eehhHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVPV--VDADIIARDV 38 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~~--id~D~i~~~l 38 (197)
..|.|+|++|+||||+++.+++ .|.++ +++..+..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 4688999999999999998874 25554 6676655544
No 189
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.98 E-value=0.00041 Score=54.07 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=18.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L 21 (197)
|+++.+||+||||||+++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHH
Confidence 678899999999999998875
No 190
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.00039 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=23.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|+|+|++||||||+++.|+. .+..++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 689999999999999999996 5555554
No 191
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0003 Score=61.22 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.+.|+||||||++++.++. .|++++..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 478999999999999999997 89887764
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.96 E-value=0.00045 Score=57.24 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=26.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIA 35 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~ 35 (197)
-|.|+|++|+|||++++.+++ .+.+++. +..+.
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 488999999999999999997 7777654 44443
No 193
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00036 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 194
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.95 E-value=0.00037 Score=56.54 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=23.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.+.++|++|+|||++++.+++ ++.+++.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 378999999999999999997 7776554
No 195
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.95 E-value=0.00047 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..++|+|++||||||+.+.|..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999984
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.95 E-value=0.00048 Score=53.38 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.7
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||++..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00032 Score=60.47 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.3
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
|.+.|+||||||++++.++. .|++++..
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 78999999999999999997 89988764
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.93 E-value=0.00034 Score=52.10 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.90 E-value=0.00069 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|.|+|.+|+|||++++.+.+
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 200
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.90 E-value=0.00018 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.1
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
|.|+|++|+||||+++.+++ .+.+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 67899999999999999996 6766654
No 201
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.89 E-value=0.00051 Score=58.02 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..++|+|++||||||+++.|+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999996
No 202
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.00049 Score=58.46 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 589999999999999999985
No 203
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.88 E-value=0.00047 Score=56.84 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 204
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.86 E-value=0.00057 Score=58.21 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 689999999999999999985
No 205
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.86 E-value=0.00062 Score=52.46 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C--CCCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N--DVPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~--G~~~id~D 32 (197)
+++|+|++||||||++..++. . +..+++.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 689999999999999999973 2 34455543
No 206
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.86 E-value=0.0004 Score=57.73 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999999985
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.85 E-value=0.00042 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+++.++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 208
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.85 E-value=0.00062 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+.+.+.-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 209
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.84 E-value=0.00059 Score=57.84 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.84 E-value=0.00061 Score=56.46 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+++.|+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999973
No 211
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.84 E-value=0.00061 Score=56.39 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+++|++||||||+++.|+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 212
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.84 E-value=0.00061 Score=57.86 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 589999999999999999985
No 213
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.83 E-value=0.0006 Score=58.35 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 589999999999999999985
No 214
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.83 E-value=0.00084 Score=55.51 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.|.|+|++|+|||++++.+++ .+.+++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 478999999999999999997 88776553
No 215
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.00065 Score=57.73 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 589999999999999999985
No 216
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.79 E-value=0.00054 Score=57.95 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 689999999999999999985
No 217
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.79 E-value=0.00051 Score=57.89 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.4
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
|.|+|++|+|||++++.+++ .+.+++..
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 78999999999999999997 78776653
No 218
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.78 E-value=0.0012 Score=54.50 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=26.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CCC--eeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DVP--VVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~~--~id~D~i~~~ 37 (197)
.+.|+|++|+||||+++.+++ . |.+ +++++.+..+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 478999999999999999985 4 655 5566665444
No 219
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.78 E-value=0.0007 Score=57.76 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 589999999999999999985
No 220
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.00072 Score=57.65 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 589999999999999999985
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00054 Score=59.52 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
=|.+.|+||+|||++++.+|. .|++++..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 378999999999999999996 89887764
No 222
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.00072 Score=56.93 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|.|+|++|+||||+++.+++ .+.+++.
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 578999999999999999997 8887654
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.00083 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||++..++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999874
No 224
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.74 E-value=0.00054 Score=58.01 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999984
No 225
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.74 E-value=0.0012 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+|+|.+||||||+.+.|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 226
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.00094 Score=55.51 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C-CCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N-DVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~-G~~~id 30 (197)
-|.|+|++|+|||++++.+++ . +.+++.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 478999999999999999996 6 766654
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.73 E-value=0.00081 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+++|++||||||+++.|+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999873
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.00082 Score=56.94 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+|+|+|++||||||+.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00051 Score=60.19 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|.|+||||||++++.++. .|++++..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 478999999999999999997 89887764
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.71 E-value=0.00084 Score=54.72 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||++..++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 231
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.00088 Score=59.26 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
..+.|+|++|+||||+++.+++ .|++++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3688999999999999999997 89887653
No 232
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.0011 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.4
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+..|+++|.+||||||+.+.|..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999998874
No 233
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.69 E-value=0.00073 Score=57.20 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+.+.|..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 234
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.69 E-value=0.0009 Score=56.14 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
.+|+|+|++||||||+.+.|.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999997
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.0013 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999985
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0011 Score=51.53 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C---CCC--eeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N---DVP--VVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~---G~~--~id~D~i 34 (197)
.+.|+|++|+||||+++.+++ . |.+ +++++.+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 588999999999999999874 2 344 5555543
No 237
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.66 E-value=0.00091 Score=57.38 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 689999999999999999985
No 238
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.66 E-value=0.00099 Score=55.56 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=28.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIA 35 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i~ 35 (197)
-|.++|.+|+||||++..|.+.|+.+++-|.+.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~ 178 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRGHRLVADDNVE 178 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEESSEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCceecCCeEE
Confidence 488999999999999999999999888655443
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0011 Score=54.92 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=25.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+++|++||||||++..|+. .|.. ++++|.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4799999999999999998873 3543 556674
No 240
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.65 E-value=0.00043 Score=56.45 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|.|+|++|+|||++++.+++
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988874
No 241
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.64 E-value=0.001 Score=56.59 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.|.|+|++|+|||++++.+++ .|.+++..
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 588999999999999999997 88887653
No 242
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.64 E-value=0.001 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh-CCC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA-NDV 26 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~-~G~ 26 (197)
+.|.+.|++||||||+++.|++ ++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4799999999999999999997 664
No 243
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.64 E-value=0.001 Score=58.52 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|+|+||+||||+++.++. .+.+++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 378999999999999999996 78887653
No 244
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.63 E-value=0.0011 Score=56.46 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+.+.|..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999864
No 245
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=55.70 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+|+|+|||||||+.+.|..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0011 Score=56.33 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+|+|++||||||+++.|+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3799999999999999999973
No 247
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.61 E-value=0.0014 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 248
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.61 E-value=0.001 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|+.|+++|.+||||||+.+.|..
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 78999999999999999999974
No 249
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00084 Score=58.80 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC-----C-C-Ceeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN-----D-V-PVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~-----G-~-~~id~D 32 (197)
+++|+|++||||||+++.|+.+ | - .+++.|
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 5899999999999999999852 6 4 456554
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.58 E-value=0.00075 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999985
No 251
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.57 E-value=0.00099 Score=57.97 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CC--CCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-ND--VPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G--~~~id~ 31 (197)
-|.+.|+||+|||++++.+++ +| ++++..
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 478999999999999999997 77 776654
No 252
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.56 E-value=0.0012 Score=55.05 Aligned_cols=32 Identities=31% Similarity=0.199 Sum_probs=27.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHhCCCCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~G~~~id~D~i 34 (197)
-|.++|.+|+||||++-.|.+.|+.+++=|.+
T Consensus 149 gvli~G~sG~GKStlal~l~~~G~~lv~DD~v 180 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLINKNHLFVGDDAI 180 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTTCEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEE
Confidence 37899999999999999999999988765544
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.55 E-value=0.0011 Score=61.84 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
-|.|.|+||||||++++.+++ .|.+++..
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 478999999999999999997 89887664
No 254
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.55 E-value=0.0012 Score=58.87 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 255
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.55 E-value=0.0014 Score=58.06 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.2
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
|.|+|++||||||+++.++. .+.+++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 78999999999999999996 6666554
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.55 E-value=0.0013 Score=53.26 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=18.7
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||++..++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 257
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.55 E-value=0.0021 Score=55.76 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=24.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C-CCCeee--hhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N-DVPVVD--ADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~-G~~~id--~D~i~~~ 37 (197)
-|.|+|++|+|||++++.+++ . +.+++. +..+...
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 478999999999999999996 6 776654 4444433
No 258
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.54 E-value=0.0014 Score=52.07 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=25.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh---CCC--CeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA---NDV--PVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~---~G~--~~id~D~ 33 (197)
.+++++|..|+||||++..|+. .|. .++|+|.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999999999983 143 3677763
No 259
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.54 E-value=0.0013 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|..|+++|.+|+||||+.+.|..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 56799999999999999999985
No 260
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.0015 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 261
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0012 Score=58.93 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999984
No 262
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.49 E-value=0.0012 Score=55.14 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+.|+|++|+||||+++.+.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.48 E-value=0.0015 Score=56.57 Aligned_cols=21 Identities=38% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998863
No 264
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.48 E-value=0.00069 Score=49.44 Aligned_cols=32 Identities=25% Similarity=0.060 Sum_probs=23.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CC-CCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-ND-VPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G-~~~id~D~i 34 (197)
.|.|+|.+|+|||++++.+.+ .+ +..+++..+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~ 62 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGTPWVSPARVEY 62 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTH
T ss_pred cEEEECCCCccHHHHHHHHHHhCCCeEEechhhC
Confidence 378999999999999999987 44 233444443
No 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.45 E-value=0.0024 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+|+|.+|+||||+.+.|...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.45 E-value=0.0016 Score=57.62 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+|+|.+||||||+++.|+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3799999999999999999873
No 267
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.44 E-value=0.0022 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999975
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.42 E-value=0.0017 Score=53.55 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
.+.+.|++|+|||++++.+++ .+.+++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 378999999999999999997 777654
No 269
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.0018 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.0017 Score=53.47 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=24.9
Q ss_pred EEEEEcCCcCcHHHHHHHHH----h-CCCC--eeehhH
Q 029212 3 IVGLTGGISSGKSTVSNLFK----A-NDVP--VVDADI 33 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~----~-~G~~--~id~D~ 33 (197)
+|+++|++||||||++..|+ . .|.. ++++|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 78999999999999999886 2 4654 566775
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0018 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=17.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||++..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999987664
No 272
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.40 E-value=0.00094 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+||||||+.+.|..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998874
No 273
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.40 E-value=0.0026 Score=50.79 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=27.6
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
|++|++.|.-|+||||++-.|+ +.|.. +||+|.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 8999999999999999998776 35765 678884
No 274
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.38 E-value=0.0018 Score=57.81 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 275
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0018 Score=58.65 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999984
No 276
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.37 E-value=0.0018 Score=55.97 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+|+|+|++||||||+.+.|..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 789999999999999999985
No 277
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.35 E-value=0.0024 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+|+|+|.+||||||+.+.|..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 278
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.35 E-value=0.0024 Score=52.36 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=27.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeehhHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDADII 34 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~D~i 34 (197)
.+.|+|+.|+||||+++.+.+ .++.+++++..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~ 65 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence 588999999999999999986 77777887543
No 279
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.35 E-value=0.0017 Score=57.97 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 280
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.35 E-value=0.0019 Score=56.86 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||+.+.++
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999997
No 281
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.0026 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999985
No 282
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.34 E-value=0.0023 Score=55.76 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.+.|+|++|+||||+++.+++ .+.+++.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 478999999999999999997 7776654
No 283
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.34 E-value=0.0029 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.8
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
|++|++.|.-|+||||++-.|+ +.|.. +||+|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8899999999999999998886 35765 678884
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.33 E-value=0.0017 Score=56.44 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=25.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
.+|+++|++||||||++..|+ +.|.. ++++|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 478999999999999998887 24655 466663
No 285
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.33 E-value=0.0021 Score=52.20 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.++|++|+||||+++.+++
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999986
No 286
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.32 E-value=0.0014 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~i 29 (197)
.|.|+|++|+||||+++.+++ .+.+++
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999999999986 777654
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.0022 Score=49.05 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=16.7
Q ss_pred EEEEEEcCCcCcHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L 21 (197)
+++.++|+|||||||++-.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36889999999999998433
No 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.31 E-value=0.002 Score=55.94 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+.+.|..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999985
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.30 E-value=0.0028 Score=46.08 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 290
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.30 E-value=0.0023 Score=52.79 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++++|++||||||+.+.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 291
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0018 Score=58.53 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 689999999999999999984
No 292
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.29 E-value=0.0021 Score=58.16 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 293
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.29 E-value=0.0049 Score=50.91 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=28.4
Q ss_pred EEEEEcCCcCcHHHHHHHHH-----hCCCCe--eehhHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFK-----ANDVPV--VDADIIARDVL 39 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~-----~~G~~~--id~D~i~~~l~ 39 (197)
.+.|+|++|+|||+++..++ +.|.++ +++..+..++.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 57899999999999998886 345664 67776666554
No 294
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.29 E-value=0.0024 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++.|+|++||||||++..++.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 295
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.28 E-value=0.0021 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCe
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPV 28 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~ 28 (197)
.++++|++||||||+++.++. .+.++
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 689999999999999999996 55554
No 296
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.0016 Score=54.10 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 297
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.28 E-value=0.0027 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+.+|+|++||||||+...+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999988876
No 298
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.27 E-value=0.0017 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=22.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|.+.|+||+||||++..|++ ++-.+++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 588999999999999999986 4334443
No 299
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.27 E-value=0.0026 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.|.|-|+.||||||+++.|++
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~ 29 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMAS 29 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999997
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.27 E-value=0.0025 Score=53.59 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=24.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+|+|.+|+||||++..|+. .|.. ++++|.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 4799999999999999999863 3544 666663
No 301
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.0039 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.26 E-value=0.0028 Score=52.81 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=25.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+++|++||||||++..|+. .|.. ++++|.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5799999999999999998863 3544 566774
No 303
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0026 Score=51.26 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999974
No 304
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.25 E-value=0.002 Score=57.06 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|++||||||+.+.|..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 305
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.24 E-value=0.0024 Score=56.56 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=25.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+++|.+||||||++..|+. .|.. ++++|.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4799999999999999999983 3554 566663
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.23 E-value=0.0027 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+|+||||+.+.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 307
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.23 E-value=0.0019 Score=60.26 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.|.|+|++||||||+++.++. .+.+++.
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 589999999999999999997 7776554
No 308
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.23 E-value=0.0033 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999875
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.22 E-value=0.0026 Score=53.99 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 689999999999999999985
No 310
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.22 E-value=0.0023 Score=56.36 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=27.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee--hhHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD--ADIIAR 36 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id--~D~i~~ 36 (197)
-|.|+|++|+|||++++.+++ .+.+++. +..+..
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 478999999999999999997 8877664 544443
No 311
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.21 E-value=0.0025 Score=50.92 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|.|+|.+|+|||++++.+.+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999986
No 312
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.21 E-value=0.0037 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.9
Q ss_pred CEEEEEE-cCCcCcHHHHHHHHH----hCCCC--eeehh
Q 029212 1 MRIVGLT-GGISSGKSTVSNLFK----ANDVP--VVDAD 32 (197)
Q Consensus 1 m~~I~lt-G~~GSGKSTv~~~L~----~~G~~--~id~D 32 (197)
|++|+++ +..|+||||++-.|+ +.|.. ++|+|
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 8999998 667899999998876 35655 77887
No 313
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.20 E-value=0.0024 Score=57.34 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.19 E-value=0.0028 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999974
No 315
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.18 E-value=0.0022 Score=57.54 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999985
No 316
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0026 Score=57.58 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999984
No 317
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.18 E-value=0.0029 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999999863
No 318
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0022 Score=53.60 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 319
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.17 E-value=0.0015 Score=54.36 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0037 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 321
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.17 E-value=0.0043 Score=53.77 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C-----CCC--eeehhHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N-----DVP--VVDADIIARD 37 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~-----G~~--~id~D~i~~~ 37 (197)
.+.|+|++|+||||+++.+++ . +.+ ++++..+..+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~ 174 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 478999999999999999975 3 555 5566655443
No 322
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0029 Score=55.17 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=25.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
.+|.++|++||||||++..|+ +.|.. ++++|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999988886 34665 467774
No 323
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.15 E-value=0.0022 Score=54.57 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.1
Q ss_pred CEEEEEEcCCcCcHHHHHHHHHh
Q 029212 1 MRIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
|..|+|+|.+|+||||+.+.|..
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 67899999999999999999974
No 324
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0034 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+++|.+||||||+.+.|...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.14 E-value=0.0034 Score=58.52 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.5
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 4 VGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
|.+.|+||||||.+++.++. .|.++++.
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred EEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 67999999999999999997 89998874
No 326
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.14 E-value=0.0031 Score=52.79 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
.+|+++|.+||||||+.+.|.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 327
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.14 E-value=0.0029 Score=53.35 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|.|++||||||+.+.++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.14 E-value=0.0032 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 329
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.11 E-value=0.0031 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++++|++||||||+.+.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 689999999999999999984
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.10 E-value=0.0038 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998874
No 331
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.10 E-value=0.0049 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.9
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
|++|+++|.-|+||||++-.|+ +.|.. +||+|.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5789999999999999998775 45765 688883
No 332
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.09 E-value=0.0038 Score=45.90 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.09 E-value=0.0042 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.08 E-value=0.004 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 335
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.08 E-value=0.0037 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 336
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.08 E-value=0.0043 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.07 E-value=0.0041 Score=45.19 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+||||||+.+.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999874
No 338
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.06 E-value=0.0038 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 4699999999999999999875
No 339
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.06 E-value=0.0025 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.|.+-|..||||||+++.|++
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~ 26 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVA 26 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
No 340
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.06 E-value=0.0038 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 341
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.0041 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999964
No 342
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.05 E-value=0.0041 Score=45.56 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999999974
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.04 E-value=0.0028 Score=55.38 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=24.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C----------CCCeeehhH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N----------DVPVVDADI 33 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~----------G~~~id~D~ 33 (197)
.+.|+|+||+|||++++.+++ . |.+++..|.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 478999999999999999985 3 667776653
No 344
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.04 E-value=0.0043 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999975
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.04 E-value=0.0038 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+|+|.+|+||||+.+.|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999753
No 346
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.03 E-value=0.0044 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.066 Sum_probs=17.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
.++.+||+|||||||.+-.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 368899999999999887664
No 347
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.03 E-value=0.0041 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.03 E-value=0.0035 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999975
No 349
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.02 E-value=0.0035 Score=52.07 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=18.8
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.++|++|+||||+++.+++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 350
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.02 E-value=0.0029 Score=52.46 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.6
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.++|++|+||||+++.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 351
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.00 E-value=0.0029 Score=51.99 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id~ 31 (197)
.+.+.|++|+||||+++.+++ .+.+++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 456777799999999999997 88776653
No 352
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.00 E-value=0.0023 Score=57.61 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 353
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.98 E-value=0.0047 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999974
No 354
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.97 E-value=0.0044 Score=50.94 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+++|.+||||||++..|+. .|.. ++++|.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 4789999999999999998872 3443 556663
No 355
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.0051 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 356
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.96 E-value=0.0054 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 357
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.96 E-value=0.0022 Score=55.71 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=24.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCC--CeeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~--~~id~D~ 33 (197)
.+|+++|.+||||||++..|+. .|. .++++|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 3689999999999999998874 243 4666663
No 358
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.95 E-value=0.0036 Score=55.45 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.5
Q ss_pred EEEEEcCCcCcHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L 21 (197)
+++|+|++||||||+++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999983
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.95 E-value=0.0041 Score=53.98 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hC-CCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----AN-DVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~-G~~--~id~D~ 33 (197)
.+|+++|..|+||||++..|+ +. |.. ++|+|.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 578999999999999999887 24 655 667773
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.95 E-value=0.0038 Score=54.25 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|.|++||||||+.+.++.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 361
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.94 E-value=0.0033 Score=51.82 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=24.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D~ 33 (197)
.+|+++|.+|+||||++..|+. .|.. ++++|.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4789999999999999998873 3544 666773
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.94 E-value=0.006 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999974
No 363
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.94 E-value=0.0056 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 364
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.94 E-value=0.0038 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCC
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDV 26 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~ 26 (197)
.+.|+|++|+|||++++.+++ ++.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 588999999999999999996 553
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.94 E-value=0.0053 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999975
No 366
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.92 E-value=0.0047 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=25.7
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
|+ |+++|..|+||||++-.|+ +.|.+ +||+|.
T Consensus 1 mk-I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MK-LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CE-EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CE-EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 65 7779999999999999887 34765 678875
No 367
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.92 E-value=0.0051 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 368
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.91 E-value=0.0021 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 689999999999999999974
No 369
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.91 E-value=0.0027 Score=57.17 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999985
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.91 E-value=0.005 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 371
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.91 E-value=0.0048 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 372
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.90 E-value=0.0057 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999999975
No 373
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.88 E-value=0.0024 Score=57.29 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+.+.+..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999875
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.86 E-value=0.0052 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+||||||+.+.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999975
No 375
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.006 Score=45.84 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhc
Confidence 4799999999999999999975
No 376
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.0046 Score=50.99 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=18.6
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.++|++|+||||+++.+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 377
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.84 E-value=0.0053 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 378
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.84 E-value=0.0072 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999974
No 379
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.84 E-value=0.003 Score=57.11 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|++||||||+.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 489999999999999999985
No 380
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0064 Score=44.79 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 381
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.83 E-value=0.005 Score=52.09 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.9
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+.+|+|++||||||+.+.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999876
No 382
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.81 E-value=0.0047 Score=58.75 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999983
No 383
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.81 E-value=0.0048 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.|.|-|..||||||+++.|++
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae 71 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999997
No 384
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.80 E-value=0.0057 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+...+.-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999998863
No 385
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.79 E-value=0.0082 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 386
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.79 E-value=0.0022 Score=54.62 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|.+||||||+.+.+.-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999864
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.78 E-value=0.0059 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.78 E-value=0.0085 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 389
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.0067 Score=46.78 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=21.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCCee
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVV 29 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~~i 29 (197)
+++.++|+|||||||.+-.++. .|..++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 4789999999999998876652 466644
No 390
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.77 E-value=0.0063 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.2
Q ss_pred CEEEEEEcCCcCcHHHHHHHHH
Q 029212 1 MRIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 1 m~~I~ltG~~GSGKSTv~~~L~ 22 (197)
|..|.|.|..||||||+++.+.
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999999987
No 391
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.76 E-value=0.007 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 392
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.76 E-value=0.0066 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 393
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.75 E-value=0.0053 Score=52.76 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
++.|+|++||||||++..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 68999999999999999775
No 394
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.75 E-value=0.0035 Score=56.39 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999975
No 395
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.75 E-value=0.0083 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 396
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.75 E-value=0.0065 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+||||||+.+.|..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 397
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.74 E-value=0.007 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999975
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.73 E-value=0.0053 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=19.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|++||||||+.+.|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999864
No 399
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.73 E-value=0.0045 Score=45.89 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.6
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999863
No 400
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.73 E-value=0.0053 Score=56.98 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=18.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|||++||||||+.+.++
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 68999999999999999886
No 401
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.72 E-value=0.0066 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 5799999999999999999975
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.72 E-value=0.0066 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999874
No 403
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.72 E-value=0.0057 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+|+||||+.+.|..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999975
No 404
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.72 E-value=0.0075 Score=44.58 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 405
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.71 E-value=0.0065 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 406
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.70 E-value=0.0067 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3699999999999999999874
No 407
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0073 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+|+||||+.+.|..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999999975
No 408
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.67 E-value=0.0074 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999974
No 409
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.67 E-value=0.007 Score=45.25 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 410
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.67 E-value=0.0058 Score=57.01 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|||++||||||+.+.++
T Consensus 609 i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 68999999999999999886
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.0048 Score=56.95 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-C----------CCCeeehhH
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-N----------DVPVVDADI 33 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~----------G~~~id~D~ 33 (197)
.+.|+|+||+||||+++.|++ . +.+++..|.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 578999999999999999986 4 777876654
No 412
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.66 E-value=0.0075 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999975
No 413
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.63 E-value=0.0057 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.6
Q ss_pred EEEEEEcCCcCcHHHHH-HHHHh-CC
Q 029212 2 RIVGLTGGISSGKSTVS-NLFKA-ND 25 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~-~~L~~-~G 25 (197)
+.|.|-|..||||||++ +.|++ ++
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999 99997 44
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.63 E-value=0.0084 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999974
No 415
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.62 E-value=0.0038 Score=59.38 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+++|+|++||||||+.+.|.-
T Consensus 701 ivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.62 E-value=0.009 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999975
No 417
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.62 E-value=0.008 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3699999999999999999985
No 418
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.61 E-value=0.0069 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=19.4
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+||||||+.+.|..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999999985
No 419
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0082 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3699999999999999999975
No 420
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.58 E-value=0.009 Score=44.90 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999988765
No 421
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.58 E-value=0.0091 Score=44.79 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999974
No 422
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.57 E-value=0.0017 Score=51.59 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.7
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
++|+|++||||||+.+.++-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999873
No 423
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.56 E-value=0.0042 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEcCCcCcHHHHHHHHHh-CC
Q 029212 4 VGLTGGISSGKSTVSNLFKA-ND 25 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~-~G 25 (197)
|.|+|++|+|||++++.+++ .+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 78999999999999999986 54
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.55 E-value=0.0087 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+|+|.+|+||||+.+.|...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999753
No 425
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.53 E-value=0.0073 Score=51.12 Aligned_cols=21 Identities=43% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
.++.|+|++||||||++..++
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0094 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999975
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.012 Score=43.87 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999975
No 428
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0093 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999984
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.52 E-value=0.007 Score=53.53 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|+|++||||||++..++
T Consensus 283 i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999987
No 430
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.50 E-value=0.0073 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+||||||+.+.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHC
Confidence 4699999999999999999975
No 431
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.0092 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.49 E-value=0.012 Score=43.45 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.49 E-value=0.0086 Score=46.72 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=17.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
++.|+|.||+|||+++-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68899999999999997654
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.49 E-value=0.01 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999975
No 435
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.49 E-value=0.0075 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~ 22 (197)
..|+++|.+|+||||+.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.49 E-value=0.0095 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999974
No 437
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.49 E-value=0.0076 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.|||||||+.+.|..
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 699999999999999999985
No 438
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.48 E-value=0.011 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999999975
No 439
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.47 E-value=0.01 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.4
Q ss_pred EEEEEEcCCcCcHHHHHHHHHhC
Q 029212 2 RIVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
..|+++|.+|+||||+.+.|...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.47 E-value=0.0095 Score=44.67 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999975
No 441
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0096 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 3699999999999999999985
No 442
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.47 E-value=0.0091 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999985
No 443
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.46 E-value=0.0071 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999974
No 444
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.46 E-value=0.0043 Score=56.53 Aligned_cols=19 Identities=47% Similarity=0.522 Sum_probs=16.9
Q ss_pred EEEEEcCCcCcHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L 21 (197)
+++|+|++||||||+.+.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 6899999999999999753
No 445
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.45 E-value=0.0097 Score=49.85 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=23.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CC--CCeeeh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-ND--VPVVDA 31 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G--~~~id~ 31 (197)
.+.|+|+|||||||++..++. .| ..++++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 578999999999999999985 44 447776
No 446
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.01 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 447
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.009 Score=48.53 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.3
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.++|++|+||||+++.+++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 448
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0099 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 449
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.43 E-value=0.0095 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999974
No 450
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.42 E-value=0.0055 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+||||||+.+.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 3689999999999999999975
No 451
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.40 E-value=0.0063 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+.+.+.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999984
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.40 E-value=0.011 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 453
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.39 E-value=0.0098 Score=48.09 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999974
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.38 E-value=0.011 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999985
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.38 E-value=0.012 Score=44.28 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999998875
No 456
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.37 E-value=0.0089 Score=50.32 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=23.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CC--CCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----ND--VPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G--~~~id~D 32 (197)
++.|.|++||||||++..++. .| ..+++++
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 689999999999999988862 34 3466653
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.36 E-value=0.01 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999964
No 458
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.34 E-value=0.014 Score=44.80 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 459
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.34 E-value=0.0098 Score=49.37 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.++|++|+||||+++.+++
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 460
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.33 E-value=0.0096 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHhC
Q 029212 3 IVGLTGGISSGKSTVSNLFKAN 24 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~~ 24 (197)
.|+|+|.+||||||+.+.|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999853
No 461
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.31 E-value=0.012 Score=44.38 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999974
No 462
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.31 E-value=0.0091 Score=56.60 Aligned_cols=19 Identities=32% Similarity=0.162 Sum_probs=18.0
Q ss_pred EEEEEcCCcCcHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L 21 (197)
+++|||++||||||+.+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 463
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.29 E-value=0.0074 Score=57.09 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=18.4
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+++|||++||||||+.+.++
T Consensus 675 i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHH
Confidence 68999999999999999875
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.29 E-value=0.0035 Score=58.45 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=23.0
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.+.|.|+|||||||+++.++. .+.+++.
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 367899999999999999996 6655544
No 465
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.29 E-value=0.012 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3699999999999999999985
No 466
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.0091 Score=44.72 Aligned_cols=22 Identities=36% Similarity=0.241 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999874
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.26 E-value=0.015 Score=44.42 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999975
No 468
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.26 E-value=0.01 Score=48.02 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.++|++|+||||+++.+++
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 378999999999999999985
No 469
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.26 E-value=0.01 Score=49.53 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=17.6
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+.+|+|++||||||+...+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999763
No 470
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.26 E-value=0.011 Score=44.85 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999974
No 471
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.25 E-value=0.0075 Score=55.52 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G~~~id 30 (197)
.+.++|++|+|||++++.+++ +|.+++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 588999999999999999997 7766554
No 472
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.24 E-value=0.0071 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=9.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999874
No 473
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.23 E-value=0.012 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+||||||+.+.|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3699999999999999999974
No 474
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.009 Score=49.80 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=18.9
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|+||+|||++++.+.+
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 475
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.21 E-value=0.011 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5799999999999999999975
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.21 E-value=0.016 Score=44.13 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 477
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.20 E-value=0.011 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.+|+|++||||||+.+.+.-
T Consensus 28 ~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999874
No 478
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.20 E-value=0.013 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+++|.+|+||||+.+.|..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999974
No 479
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.20 E-value=0.0099 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++|+|++||||||+++.++.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 480
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.19 E-value=0.012 Score=48.15 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=23.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh-CC--CCeeehh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA-ND--VPVVDAD 32 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~-~G--~~~id~D 32 (197)
.+.|+|++|+||||+++.+.+ .+ +.++++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 588999999999999999975 33 3466654
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.17 E-value=0.011 Score=47.77 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHT
T ss_pred CeEEEEeCCCCCHHHHHHHHHC
Confidence 3699999999999999999975
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.014 Score=43.76 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=20.0
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999985
No 483
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.15 E-value=0.012 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=18.8
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+|+||||+.+.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998753
No 484
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.14 E-value=0.012 Score=49.79 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.5
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
+.+|+|++||||||+.+.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 57899999999999999886
No 485
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.14 E-value=0.0084 Score=54.61 Aligned_cols=16 Identities=50% Similarity=0.601 Sum_probs=15.1
Q ss_pred EEEEEcCCcCcHHHHH
Q 029212 3 IVGLTGGISSGKSTVS 18 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~ 18 (197)
+++|+|++||||||+.
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 6899999999999996
No 486
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.13 E-value=0.011 Score=49.52 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+||||||+.+.|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999985
No 487
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.13 E-value=0.0068 Score=56.76 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.1
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.+.|+|++|+||||+++.+++
T Consensus 193 ~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999985
No 488
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.11 E-value=0.017 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=25.8
Q ss_pred CEEEEEEcC-CcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 1 MRIVGLTGG-ISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 1 m~~I~ltG~-~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
|++|++||. +|+||||++.-|+ +.|.. +||+|.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 568999976 7999999998876 35755 678883
No 489
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.10 E-value=0.015 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+|+|.+|+||||+.+.|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3689999999999999999975
No 490
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.09 E-value=0.017 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCcCcHHHHHHHHHh
Q 029212 3 IVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.|+|+|.+|+||||+.+.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999975
No 491
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.013 Score=47.55 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEEcCCcCcHHHHHHHHHh
Q 029212 4 VGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 4 I~ltG~~GSGKSTv~~~L~~ 23 (197)
+.++|++|+||||+++.+++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 492
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.07 E-value=0.013 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
.++.|+|++||||||++..++.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998873
No 493
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.07 E-value=0.013 Score=50.57 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=0.0
Q ss_pred EEEEEEcCCcCcHHHHHHHH
Q 029212 2 RIVGLTGGISSGKSTVSNLF 21 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L 21 (197)
..|+|+|.+|+||||+.+.|
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
No 494
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.07 E-value=0.015 Score=45.87 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.6
Q ss_pred EEEEEEcCCcCcHHH-HHHHHH
Q 029212 2 RIVGLTGGISSGKST-VSNLFK 22 (197)
Q Consensus 2 ~~I~ltG~~GSGKST-v~~~L~ 22 (197)
.+..+||+||||||| +.+.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999 555553
No 495
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.04 E-value=0.013 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
++.|+|++||||||++..++
T Consensus 109 i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHH
Confidence 68899999999999999887
No 496
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.03 E-value=0.01 Score=44.30 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.7
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA 23 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~ 23 (197)
..|+++|.+|+||||+.+.|..
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999964
No 497
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.02 E-value=0.015 Score=50.44 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=24.1
Q ss_pred EEEEEEcCCcCcHHHHHHHHHh----CCCC--eeehh
Q 029212 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDAD 32 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~~----~G~~--~id~D 32 (197)
.+|+++|++||||||++..|+. .|.. ++++|
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 4789999999999999998873 3543 55666
No 498
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.01 E-value=0.013 Score=52.53 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEcCCcCcHHHHHHHHHh----CCCCeee
Q 029212 3 IVGLTGGISSGKSTVSNLFKA----NDVPVVD 30 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~~----~G~~~id 30 (197)
++.|+|+|||||||+...+.. .|.+++-
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 578999999999999887753 5766554
No 499
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.00 E-value=0.014 Score=48.16 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=18.5
Q ss_pred EEEEEcCCcCcHHHHHHHHH
Q 029212 3 IVGLTGGISSGKSTVSNLFK 22 (197)
Q Consensus 3 ~I~ltG~~GSGKSTv~~~L~ 22 (197)
++.|+|.||+||||++..++
T Consensus 70 l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68899999999999999886
No 500
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.00 E-value=0.023 Score=45.13 Aligned_cols=32 Identities=16% Similarity=-0.058 Sum_probs=24.5
Q ss_pred EEEEEEcCCcCcHHHHHHHHH----hCCCC--eeehhH
Q 029212 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (197)
Q Consensus 2 ~~I~ltG~~GSGKSTv~~~L~----~~G~~--~id~D~ 33 (197)
..|.+.|.+|+||||++-.++ +.|+. ++++|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 468999999999999966554 46876 457764
Done!