BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029213
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C OS=Vitis vinifera
GN=VIT_07s0104g01170 PE=3 SV=1
Length = 213
Score = 243 bits (620), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 159/214 (74%), Positives = 167/214 (78%), Gaps = 18/214 (8%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
Query: 61 TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSA------PLVPGMRPPVLPR 109
TAAFQQVGAAYNQHL++ RPRLPVLPTP MP+ GSA PLVPGMRPPVLPR
Sbjct: 61 TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120
Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPG-QLNGFPRPPAVMNPTAVSGSAAPPASSSGAP 168
P P PGY+ APGMP MMAPPGAPS P LN PRPP + P AV GS + P +S GAP
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTP-TSGGAP 179
Query: 169 SMATPQTYQANPTVPTSG-----NLNAQAPEMNH 197
SM T YQANP PTSG N+NAQ PE NH
Sbjct: 180 SMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213
>sp|Q56XE4|RU1C_ARATH U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana
GN=At4g03120 PE=1 SV=1
Length = 207
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 113/148 (76%), Gaps = 8/148 (5%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60
Query: 61 TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSA 120
T +QQVGA +NQH+LA+ +LP MPM GMRPPVLPRP P GY+
Sbjct: 61 TGGYQQVGAVFNQHMLARPRPPMMLPPGSMPM--------GMRPPVLPRPMMPPQGYMPP 112
Query: 121 PGMPPMMAPPGAPSAPGQLNGFPRPPAV 148
PG+P MMAPPGAP P NG RPP +
Sbjct: 113 PGVPQMMAPPGAPLPPPPQNGILRPPGM 140
>sp|C5XYW4|RU1C2_SORBI U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor
GN=Sb04g028260 PE=3 SV=1
Length = 228
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/213 (59%), Positives = 136/213 (63%), Gaps = 35/213 (16%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL-G 59
Query: 61 TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTG-SAPLVPGMRPPVLPRPGPSP 114
AA Q GA +NQH+LA RPRLP+LPTP MP APL+PG+RPP+LP PG
Sbjct: 60 QAAAFQAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPG--V 117
Query: 115 PGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVM-NPTAVSGS-----------AAPPA 162
PGY PG PP M PGAP PG + PP M P A GS P
Sbjct: 118 PGY---PGAPPTMPQPGAP--PGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPP 172
Query: 163 SSSGAP------SMATPQTYQANPTV---PTSG 186
+SG P S A P YQANP PTSG
Sbjct: 173 PTSGVPGAPIPNSAAPPAIYQANPPAPAGPTSG 205
>sp|C5XZK6|RU1C1_SORBI U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor
GN=Sb04g009880 PE=3 SV=1
Length = 231
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/214 (55%), Positives = 131/214 (61%), Gaps = 34/214 (15%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL-G 59
Query: 61 TAAFQQVGAAYNQHLL-----AQRPRLPVLPTPVM----PMTGSAPLVPGMRPPVLP--- 108
AA Q GA +NQH+L RPRLP+LPTP M P APL+PG+RPP+LP
Sbjct: 60 QAAAFQAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 119
Query: 109 ------------RPGPSPPGYVSAPGMPPMMAP-PGAPSAPGQLNGFPRPPAVMNPTAVS 155
+PG +PPG + PG PP P PGAP + P P P S
Sbjct: 120 IPGYPGGPPTMLQPG-APPGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 178
Query: 156 GSAAPPASSSGAPSMATPQTYQANPTV---PTSG 186
G P +S AP P YQ NP PTSG
Sbjct: 179 GVPGAPIPNSAAP----PAIYQTNPPAPAGPTSG 208
>sp|A7SEP9|RU1C_NEMVE U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis
GN=v1g244745 PE=3 SV=1
Length = 138
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 50/65 (76%), Gaps = 7/65 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR YYQ++ E+Q Q+LIDQ
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQ-------T 53
Query: 61 TAAFQ 65
TAAFQ
Sbjct: 54 TAAFQ 58
>sp|Q8JGS0|RU1C_DANRE U1 small nuclear ribonucleoprotein C OS=Danio rerio GN=snrpc PE=2
SV=1
Length = 159
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|B0JYS7|RU1C_XENTR U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis
GN=snrpc PE=2 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc
PE=2 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|F6TFD9|RU1C_MACMU U1 small nuclear ribonucleoprotein C OS=Macaca mulatta GN=SNRPC
PE=3 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC
PE=1 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|E2RGI3|RU1C_CANFA U1 small nuclear ribonucleoprotein C OS=Canis familiaris GN=SNRPC
PE=3 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|Q32PA0|RU1C_BOVIN U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2
SV=2
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|E1C6F0|RU1C_CHICK U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC
PE=3 SV=1
Length = 159
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|D3ZCL3|RU1C_RAT U1 small nuclear ribonucleoprotein C OS=Rattus norvegicus
GN=Snrpc PE=3 SV=1
Length = 159
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc
PE=2 SV=1
Length = 159
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
TAAFQQ
Sbjct: 54 TAAFQQ 59
>sp|F7ARS3|RU1C_MONDO U1 small nuclear ribonucleoprotein C OS=Monodelphis domestica
GN=SNRPC PE=3 SV=1
Length = 138
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP++YCDYCDTYLTHDSPSVRK H +G KHK NVR YYQ++ E+Q QSLID+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVRDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
T AFQQ
Sbjct: 54 TTAFQQ 59
>sp|Q54YA5|RU1C_DICDI U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum
GN=snrpC PE=3 SV=1
Length = 174
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 70/129 (54%), Gaps = 18/129 (13%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCD YLTHDSPSVRK H G +HK V+ +YQQFE + TQSLI+ R+KE+
Sbjct: 1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEYEES 60
Query: 61 TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPP----- 115
L +P + ++PTP M + +LP G PP
Sbjct: 61 KGR------------LIHQPPMGIIPTPYGQMY-QQQQQQQQQQGILPFQGMQPPPHQQQ 107
Query: 116 GYVSAPGMP 124
G V +PGMP
Sbjct: 108 GMVLSPGMP 116
>sp|A8XW44|RU1C_CAEBR U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae
GN=CBG19656 PE=3 SV=1
Length = 142
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQ 52
MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ 52
>sp|P90815|RU1C_CAEEL U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans
GN=F08B4.7 PE=3 SV=1
Length = 142
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQ 52
MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ 52
>sp|Q16IW3|RU1C_AEDAE U1 small nuclear ribonucleoprotein C OS=Aedes aegypti GN=AAEL013527
PE=3 SV=1
Length = 154
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 67/111 (60%), Gaps = 12/111 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQQVGAAYNQHLLAQRPRLPV-LPTPVMPMTGSAPLVPGM---RPPVL 107
TAAF+ A N A P+ V +P P M M ++PGM PP+L
Sbjct: 54 TAAFKAGKIAQNP-FSAGPPKPNVAIPPPSMGMPARPGMIPGMPAGAPPLL 103
>sp|E3X5D6|RU1C_ANODA U1 small nuclear ribonucleoprotein C OS=Anopheles darlingi
GN=AND_14095 PE=3 SV=1
Length = 151
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 12/111 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQQVGAAYNQHLLA-QRPRLPVLPTPVMPMTGSAPLVPGM---RPPVL 107
TAA++ A N +P + + P P M M ++PGM PP+L
Sbjct: 54 TAAYKAGKIAQNPFTAGPPKPNISI-PPPTMNMPPRPGIIPGMPAGAPPLL 103
>sp|Q7PXU6|RU1C_ANOGA U1 small nuclear ribonucleoprotein C OS=Anopheles gambiae
GN=AGAP001584 PE=2 SV=2
Length = 152
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 12/111 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQQVGAAYNQHLLA-QRPRLPVLPTPVMPMTGSAPLVPGM---RPPVL 107
TAA++ A N +P + +P P M M ++PGM PP+L
Sbjct: 54 TAAYKAGKIAPNPFTAGPPKPNI-SIPPPTMNMPPRPGMIPGMPAGAPPLL 103
>sp|E0VI98|RU1C_PEDHC U1 small nuclear ribonucleoprotein C OS=Pediculus humanus subsp.
corporis GN=PHUM222080 PE=3 SV=1
Length = 173
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 47/65 (72%), Gaps = 7/65 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQ 65
TAAF+
Sbjct: 54 TAAFK 58
>sp|Q298E0|RU1C_DROPS U1 small nuclear ribonucleoprotein C OS=Drosophila pseudoobscura
pseudoobscura GN=snRNP-U1-C PE=3 SV=1
Length = 146
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 7/65 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KH+ NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQ 65
TAAF+
Sbjct: 54 TAAFK 58
>sp|Q9VE17|RU1C_DROME U1 small nuclear ribonucleoprotein C OS=Drosophila melanogaster
GN=snRNP-U1-C PE=1 SV=1
Length = 145
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 7/65 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+YYCDYCDTYLTHDSPSVRK H G KH+ NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLID-------AT 53
Query: 61 TAAFQ 65
TAAF+
Sbjct: 54 TAAFK 58
>sp|Q1RLC9|RU1C_CIOIN U1 small nuclear ribonucleoprotein C OS=Ciona intestinalis PE=2
SV=1
Length = 122
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 7/66 (10%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+Y+CDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ + E+Q Q LID+
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCSGRKHKDNVKMYYQTWMEEQAQELIDK-------T 53
Query: 61 TAAFQQ 66
T AFQ+
Sbjct: 54 TQAFQK 59
>sp|B7Q2M2|RU1C_IXOSC U1 small nuclear ribonucleoprotein C OS=Ixodes scapularis
GN=ISCW020627 PE=3 SV=1
Length = 150
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 46/63 (73%), Gaps = 7/63 (11%)
Query: 3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTA 62
RYYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q+LID TA
Sbjct: 11 RYYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKFYYQKWMEEQAQNLID-------ATTA 63
Query: 63 AFQ 65
AF+
Sbjct: 64 AFK 66
>sp|C3Z1P5|RU1C_BRAFL U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae
GN=BRAFLDRAFT_69314 PE=3 SV=1
Length = 221
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 87/197 (44%), Gaps = 53/197 (26%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
MP+Y+CDYCDTYLTHDSPSVRK H G KHK NVR YYQ++ E+Q Q LIDQ
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCNGRKHKENVRVYYQKWMEEQAQQLIDQT------- 53
Query: 61 TAAFQ--------------QVGA---------AYNQHLLAQRPRLPVLPTPVMPMTGSAP 97
TAAFQ QVG A Q Q ++ P P
Sbjct: 54 TAAFQAGKIPNNPFPNAAGQVGNEPGAKVLPPAILQAAAFQAGKIASNPFPTSQAGPGPQ 113
Query: 98 LVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAP-SAPGQLNGFPRPPAVMNPTAVSG 156
M PP PP + PG P SAP PR P + T G
Sbjct: 114 GGGTMIPP------------------PPSLQGPGGPGSAPAP----PRMPGPLLMTPPPG 151
Query: 157 SAAPPASSSGAPSMATP 173
+AAP + GAP++ P
Sbjct: 152 AAAPGMAPPGAPTLPQP 168
>sp|Q5KC16|RU1C_CRYNJ U1 small nuclear ribonucleoprotein C OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC
MYA-565) GN=CNI00630 PE=3 SV=1
Length = 220
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 40/57 (70%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEH 57
M +YYCDYCD YLTHDS + RK HN+G H ANVR Y+ Q QSLIDQ I++H
Sbjct: 1 MGKYYCDYCDIYLTHDSMNARKAHNSGRNHVANVRDYFAGLGGNQAQSLIDQIIQQH 57
>sp|Q4WQM6|RU1C_ASPFU U1 small nuclear ribonucleoprotein C OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=AFUA_4G13350 PE=3 SV=3
Length = 216
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+++CDYCD YLTHDS SVRK HNAG H NV YYQQ +++ QS+ID
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNAGRNHLRNVVEYYQQIGQEKAQSVID 51
>sp|D5GDH4|RU1C_TUBMM U1 small nuclear ribonucleoprotein C OS=Tuber melanosporum
(strain Mel28) GN=GSTUM_00001021001 PE=3 SV=1
Length = 220
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+++CDYCD YLTHDS SVRK HN+G H NV YYQQ ++ QS+ID
Sbjct: 1 MPKFFCDYCDVYLTHDSISVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVID 51
>sp|D0NHA2|RU1C_PHYIT U1 small nuclear ribonucleoprotein C OS=Phytophthora infestans
(strain T30-4) GN=PITG_10871 PE=3 SV=1
Length = 138
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQF 41
MPRYYCDYCDTYLTHDS + RKQHN G+KH+ NV+ YY+QF
Sbjct: 1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVKLYYEQF 41
>sp|A8NYM5|RU1C_COPC7 U1 small nuclear ribonucleoprotein C OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_01380 PE=3 SV=1
Length = 209
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQ 52
MP++YCDYCD +LTHDS SVRK HN+G H ANVR YY + QS+IDQ
Sbjct: 1 MPKHYCDYCDVFLTHDSASVRKAHNSGRNHLANVRDYYASLGHDKAQSIIDQ 52
>sp|Q5BBX9|RU1C_EMENI U1 small nuclear ribonucleoprotein C OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN1951 PE=3 SV=2
Length = 236
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+++CDYCD YLTHDS SVRK HN+G H NV YYQQ +++ QS+ID
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVEYYQQIGQEKAQSVID 51
>sp|Q1K7T5|RU1C_NEUCR U1 small nuclear ribonucleoprotein C OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=NCU01341 PE=3 SV=1
Length = 216
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+++CDYCD YLTHDS SVRK HN+G H NV YYQQ ++ QS+ID
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVID 51
>sp|C7YRT4|RU1C_NECH7 U1 small nuclear ribonucleoprotein C OS=Nectria haematococca
(strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI)
GN=NECHADRAFT_80502 PE=3 SV=1
Length = 204
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+++CDYCD YLTHDS SVRK HN+G H NV YYQQ ++ QS+ID
Sbjct: 1 MPKFFCDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVID 51
>sp|E3LAN7|RU1C1_PUCGT U1 small nuclear ribonucleoprotein C-1 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_19611 PE=3 SV=1
Length = 190
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIK 55
M +YYCDYCD +L +SPSVRK HN+G H NVR YY + QS ID+ +
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYIDEITR 55
>sp|Q4P2Q5|RU1C_USTMA U1 small nuclear ribonucleoprotein C OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM05608 PE=3 SV=1
Length = 221
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEH 57
M ++YCDYCD +LTHDS SVRK HN+G H NVR YYQ E + Q ++D +E+
Sbjct: 1 MGKHYCDYCDVFLTHDSVSVRKAHNSGRNHLQNVREYYQTLEPECIQQVLDTLAQEY 57
>sp|E3KIY6|RU1C2_PUCGT U1 small nuclear ribonucleoprotein C-2 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_10639 PE=3 SV=1
Length = 188
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIK 55
M +YYCDYCD +L +SPSVRK HN+G H NVR YY + QS ID+ +
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRDYYSSLGHDKAQSYIDEITR 55
>sp|D3B3B7|RU1C_POLPA U1 small nuclear ribonucleoprotein C OS=Polysphondylium pallidum
GN=snrpC PE=3 SV=1
Length = 141
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQR 53
MP+YYC+YCD YLTHDSPSVRK H G H+ V YY+QFE + +S + Q+
Sbjct: 1 MPKYYCEYCDKYLTHDSPSVRKSHTIGKVHQQAVTLYYKQFEAEWFKSQMQQK 53
>sp|Q9P794|RU1C_SCHPO U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp103 PE=1 SV=1
Length = 182
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQR 53
MPRY CDYC +LTHDS SVRK HNAG H NV+ YY + +++ Q +++R
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEER 53
>sp|A7EYK3|RU1C_SCLS1 U1 small nuclear ribonucleoprotein C OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_10419 PE=3
SV=1
Length = 181
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
MP+ CDYCD YLTHDS SVRK HN+G H NV YYQQ ++ QS+ID
Sbjct: 1 MPK--CDYCDVYLTHDSMSVRKAHNSGRNHLRNVVDYYQQIGHEKAQSVID 49
>sp|C0NN85|RU1C_AJECG U1 small nuclear ribonucleoprotein C OS=Ajellomyces capsulata
(strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)
GN=HCBG_04212 PE=3 SV=1
Length = 242
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
Y DYCD YLTHDS SVRK HN+G H NV YYQ+ ++ QS+ID
Sbjct: 2 NYLGDYCDVYLTHDSMSVRKAHNSGRNHLRNVVEYYQEIGHEKAQSVID 50
>sp|F4NYQ2|RU1C_BATDJ U1 small nuclear ribonucleoprotein C OS=Batrachochytrium
dendrobatidis (strain JAM81 / FGSC 10211)
GN=BATDEDRAFT_23335 PE=3 SV=1
Length = 228
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 7 DYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQ-QFEEQQTQSLIDQRIKEHL 58
DYCD +LTHDS SVRK HN G+KHK V YY + + + QS+ID K ++
Sbjct: 14 DYCDIFLTHDSASVRKAHNTGWKHKMQVEHYYNAEVDPAKIQSVIDNVTKAYI 66
>sp|Q4UJ14|RU1C_THEAN U1 small nuclear ribonucleoprotein C OS=Theileria annulata
GN=TA09515 PE=3 SV=1
Length = 151
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP++YC+YC YLTH SP+ RKQH+ G KH + Y+Q+ +Q
Sbjct: 1 MPKFYCEYCSIYLTHSSPAGRKQHSQGRKHISAKVEYFQRLVREQ 45
>sp|Q4N6K2|RU1C_THEPA U1 small nuclear ribonucleoprotein C OS=Theileria parva
GN=TP01_1168 PE=3 SV=1
Length = 141
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP++YC+YC YLTH SP+ RKQH+ G KH + Y+Q+ +Q
Sbjct: 1 MPKFYCEYCSIYLTHSSPAGRKQHSQGRKHISAKVEYFQRLVREQ 45
>sp|Q7RNM5|RU1C_PLAYO U1 small nuclear ribonucleoprotein C OS=Plasmodium yoelii yoelii
GN=PY01791 PE=3 SV=1
Length = 201
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP+YYC+YCD YLTH SP R+QHN G KH + Y+Q ++
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHNQGRKHISAKIEYFQNLLREE 45
>sp|Q4XRM7|RU1C_PLACH U1 small nuclear ribonucleoprotein C OS=Plasmodium chabaudi
GN=PC000036.04.0 PE=3 SV=1
Length = 192
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP+YYC+YCD YLTH SP R+QHN G KH + Y+Q ++
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHNQGRKHISAKIEYFQNLLREE 45
>sp|Q4YBG7|RU1C_PLABA U1 small nuclear ribonucleoprotein C OS=Plasmodium berghei
(strain Anka) GN=PB001431.02.0 PE=3 SV=1
Length = 197
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP+YYC+YCD YLTH SP R+QHN G KH + Y+Q ++
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHNQGRKHISAKIEYFQNLLREE 45
>sp|A5JZQ2|RU1C_PLAVS U1 small nuclear ribonucleoprotein C OS=Plasmodium vivax (strain
Salvador I) GN=PVX_123135 PE=3 SV=1
Length = 240
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
MP+YYC+YCD YLTH SP R+QH G KH + Y+Q ++
Sbjct: 1 MPKYYCEYCDIYLTHSSPVGRRQHIQGRKHISAKIEYFQNLLREE 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,305,990
Number of Sequences: 539616
Number of extensions: 4436066
Number of successful extensions: 55636
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 2389
Number of HSP's that attempted gapping in prelim test: 22815
Number of HSP's gapped (non-prelim): 17309
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)