BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029214
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 242 bits (618), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/173 (72%), Positives = 138/173 (79%), Gaps = 15/173 (8%)
Query: 8 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH 67
+A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS +
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-- 63
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPS 127
QA +YA PE GSSS+ + KI + R T TE+R+VNR PEKRQRVPS
Sbjct: 64 -QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNR-------PPEKRQRVPS 110
Query: 128 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPKL 180
AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLE+N Q K+
Sbjct: 111 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 176 bits (447), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 118/185 (63%), Gaps = 19/185 (10%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+D + E++CY+ C+FC +LAVSVP +SL +VTVRCGHC+NL S+N+ + S +
Sbjct: 3 VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62
Query: 66 HHHQAPS---YASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHS---TTP 119
H P S R D SSS+ N +S E + RE+P P
Sbjct: 63 HQDLQPHRQHTTSLVTRKDCASSSRSTNNLS-----------ENI--DREAPRMPPIRPP 109
Query: 120 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQPK 179
EKRQRVPSAYN+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGL L+ N + K
Sbjct: 110 EKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGK 169
Query: 180 LDDAS 184
D S
Sbjct: 170 QLDQS 174
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 127/187 (67%), Gaps = 17/187 (9%)
Query: 3 SCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSW 62
S I APE +CY+ CNFCN + AVSVP +S+L+IVTVRCGHC++L SVN+ Q+L
Sbjct: 2 SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPA 61
Query: 63 QDVHHHQ----APSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTT 118
+D H Q + + E + GSSS+ ++ M + + TE + H
Sbjct: 62 ED--HLQDNLKMHNMSFRENYSEYGSSSRYG-RVPMMFSKND--TEHML-------HVRP 109
Query: 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 178
PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHFGL +++
Sbjct: 110 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSHESSK- 168
Query: 179 KLDDASG 185
KLD+A G
Sbjct: 169 KLDEAIG 175
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 120/191 (62%), Gaps = 30/191 (15%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM------AAA-------- 56
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ AAA
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 57 FQSLS--------WQDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
Q+L +V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEERVVNRRESPHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 160
AT+ + +P + T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 161 AHFPHIHFGLM 171
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 173 bits (439), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 120/191 (62%), Gaps = 30/191 (15%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM------AAA-------- 56
EQLCY+ CNFC+ +LAV VPCSSL VTVRCGHC+NL SVN+ AAA
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 57 FQSLS--------WQDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNK 101
Q+L +V QAP+ ASP S+S C N A M + NK
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 102 ATEERVVNRRESPHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 160
AT+ + +P + T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 161 AHFPHIHFGLM 171
AHFPHIHFGLM
Sbjct: 209 AHFPHIHFGLM 219
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 167 bits (422), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 119/186 (63%), Gaps = 10/186 (5%)
Query: 7 DVAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQD 64
+AP EQ+CY+ CNFCN +LAVSVP +S+L+IVTVRCGHC+NL SVN+ S + QD
Sbjct: 4 QIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD 63
Query: 65 VHHHQAPSYASPECRIDLGSSSKCN----NKISAMRTPTNKAT----EERVVNRRESPHS 116
HHH C D + + S +R P A ++ ++ H+
Sbjct: 64 HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHA 123
Query: 117 TTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANN 176
PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHFGL
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183
Query: 177 QPKLDD 182
KL D
Sbjct: 184 GKKLVD 189
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 111/191 (58%), Gaps = 30/191 (15%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 160
++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 161 AHFPHIHFGLM 171
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 111/191 (58%), Gaps = 30/191 (15%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--H 68
EQLCY+ CN C+ +LAV VPCSSL VTVRCGHC+NL SVN+ + H
Sbjct: 23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82
Query: 69 QAPS---------------YASPECRIDLGSSSK-----------CNNKISAMRTPTNKA 102
PS + +P ++ +S+ C + AM+ P K
Sbjct: 83 FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKP 142
Query: 103 TEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 160
++ + +P S PEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNW
Sbjct: 143 VQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202
Query: 161 AHFPHIHFGLM 171
AHFPHIHFGLM
Sbjct: 203 AHFPHIHFGLM 213
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 110/175 (62%), Gaps = 9/175 (5%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ LCY+ CNFC +LAV+VP +SL VTVRCG C+NL SVNM + S Q
Sbjct: 23 DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGP 82
Query: 71 PSYASPECRID-LGSSSKCNNKISAMRTPTNKATEERVVNRRE------SPHSTTPEKRQ 123
SY +P+ ++ L + N + + PT + ++ P + PEKRQ
Sbjct: 83 HSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQ 142
Query: 124 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQP 178
RVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+ +NQP
Sbjct: 143 RVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV--PDNQP 195
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 108/182 (59%), Gaps = 19/182 (10%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSV-------------NMAAAF 57
+QLCY+ C+FC+ VLAVSVP SSL VTVRCGHCSNL SV N+ +F
Sbjct: 23 DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82
Query: 58 QSLSWQDVHHHQAPSYASPECRIDLG------SSSKCNNKISAMRTPTNKATEERVVNRR 111
+ S I++ +S+ N+ M T ++ + R
Sbjct: 83 LPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPR 142
Query: 112 ESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 171
P + PEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 143 PPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 202
Query: 172 LE 173
+
Sbjct: 203 AD 204
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 104/165 (63%), Gaps = 10/165 (6%)
Query: 6 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDV 65
+ E +CY+ CN+CN +L V+VP + +IVTVRCGHC+ + S+++A Q+ + QD
Sbjct: 3 VQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQD- 61
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRV 125
H Q + + GS I++ T+ A ++++ PEKRQRV
Sbjct: 62 HQVQNRGFQGN----NFGSYD-----IASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRV 112
Query: 126 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170
PSAYN+FIKEEIQRIK +NP+ISHREAFS AAKNWAH P +HFGL
Sbjct: 113 PSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 118/215 (54%), Gaps = 50/215 (23%)
Query: 7 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAF--------- 57
D EQLCY+ C++C+ VL VSVP SSL + VTVRCGHCS+L +VNM
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAP 113
Query: 58 ------------------QSLSWQDV---HHH----QAPSYASPECRI----DLG----S 84
SL+ HHH + + SP + LG S
Sbjct: 114 PPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMAS 173
Query: 85 SSKC--NNKISAMRTPTNKATEERVVNRRESPHSTT------PEKRQRVPSAYNQFIKEE 136
++ C NN +A P ++ + + SP + T PEKRQRVPSAYN+FIK+E
Sbjct: 174 AASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDE 233
Query: 137 IQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 171
IQRIKA NPDISHREAFS AAKNWAHFPHIHFGLM
Sbjct: 234 IQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLM 268
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 97/166 (58%), Gaps = 11/166 (6%)
Query: 10 PEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAF-------QSLS 61
P Q+C++ C FC +L VSVP +SL +VTVRCGHC++L SVN M A+F
Sbjct: 18 PGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSH 77
Query: 62 WQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEK 121
+ + + E + K N+ + + + N E+ V+R + PEK
Sbjct: 78 LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDN---EDEDVSRVYQVVNKPPEK 134
Query: 122 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 167
RQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 135 RQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 90/155 (58%), Gaps = 22/155 (14%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVN-MAAAFQSLSWQDVHHHQ 69
E LCY+ C +CN VLAV VPC L+D VTV+CGHC+NL ++ Q LS D H
Sbjct: 8 EHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSPTD---HP 64
Query: 70 APSYASP--ECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHST-TPEKRQRVP 126
+ P +CR N+ + +PT+ R +P PEK+ R+P
Sbjct: 65 LGPFQGPCTDCR---------RNQPLPLVSPTSNEGSPR------APFVVKPPEKKHRLP 109
Query: 127 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWA 161
SAYN+F++EEIQRIKA PDI HREAFS AAKNWA
Sbjct: 110 SAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 21/156 (13%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQ---SLSWQDVHH 67
E L Y+ C+ CN +LAV +P +LD VTV+CGHC NL + Q SL+ Q
Sbjct: 19 EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQ---- 74
Query: 68 HQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPS 127
S+ GS K + S+ + ++ P PEK+QR+PS
Sbjct: 75 --MQSFG--------GSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKP----PEKKQRLPS 120
Query: 128 AYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 163
AYN+F+++EIQRIK+ NP+I HREAFS AAKNWA +
Sbjct: 121 AYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 19/162 (11%)
Query: 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWS-VNM----AAAFQSLSWQDV 65
E+L + C+FC VL VSVPCSS+L +V V+CGHCS + S VN+ +A L+ Q++
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQEL 73
Query: 66 HHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRV 125
P S E G + + P A + R+ QR
Sbjct: 74 DAGPPPGEYSDE---SSGDDREGRDAEDDAPAPAAAAVANKPPGRK-----------QRT 119
Query: 126 PSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 167
PSAYN F+KEEI+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 120 PSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q6FK47|IPI1_CANGA Pre-rRNA-processing protein IPI1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=IPI1 PE=3 SV=1
Length = 334
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 13 LCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGH--CSNLWSVNMAAAFQSLSWQDVHHHQA 70
+ YI +I+ V + L + CG C W+ MA F+ LSW+ H +
Sbjct: 135 VLYINMGMTHILPRVQADSTKFLGCLLKYCGQEFCDQAWNKLMAGIFRVLSWETQHSKNS 194
Query: 71 PSYASPECRIDLGSSSKCNNKISAMRTPTNKATEE 105
A +SK +NK A T A E
Sbjct: 195 NQAAGAM------QTSKRDNKFQAAHLSTLYALLE 223
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 127 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164
++Y +F KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 127 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164
S+Y +F KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 127 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164
S+Y +F KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 101 KATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 160
K T +V +++ P++ P++ Q SAY ++ E R KA N IS E A K W
Sbjct: 538 KETPGKVKRKKKDPNA--PKRPQ---SAYFLWLNENRGRFKAENKGISVTELTKLAGKEW 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.128 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,473,779
Number of Sequences: 539616
Number of extensions: 2757475
Number of successful extensions: 7202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 7157
Number of HSP's gapped (non-prelim): 61
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)