Query 029214
Match_columns 197
No_of_seqs 120 out of 187
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz6_A HMG-box transcription f 98.1 4.3E-06 1.5E-10 58.9 5.6 49 116-164 2-50 (82)
2 1hme_A High mobility group pro 98.1 6.2E-06 2.1E-10 57.2 5.7 47 118-164 3-49 (77)
3 3nm9_A HMG-D, high mobility gr 98.0 8.6E-06 3E-10 56.3 5.5 44 121-164 3-46 (73)
4 2crj_A SWI/SNF-related matrix- 98.0 1.5E-05 5.2E-10 57.5 6.5 48 117-164 3-50 (92)
5 2cs1_A PMS1 protein homolog 1; 97.9 1.9E-05 6.4E-10 57.0 6.3 48 118-165 4-51 (92)
6 1hry_A Human SRY; DNA, DNA-bin 97.9 1.2E-05 4E-10 55.6 4.9 46 119-164 2-47 (76)
7 1wgf_A Upstream binding factor 97.9 1.4E-05 4.9E-10 57.6 5.2 47 118-164 17-63 (90)
8 1wxl_A Single-strand recogniti 97.9 1.8E-05 6.2E-10 54.7 5.4 45 119-163 1-45 (73)
9 2e6o_A HMG box-containing prot 97.9 1.6E-05 5.3E-10 56.9 5.2 47 118-164 14-60 (87)
10 2co9_A Thymus high mobility gr 97.9 2E-05 6.8E-10 58.1 5.7 47 118-164 14-60 (102)
11 1j46_A SRY, sex-determining re 97.9 2.3E-05 7.9E-10 55.7 5.8 47 119-165 2-48 (85)
12 1k99_A Upstream binding factor 97.8 2.7E-05 9.1E-10 57.4 5.4 48 117-164 6-53 (99)
13 4euw_A Transcription factor SO 97.8 3.3E-05 1.1E-09 57.6 5.8 47 118-164 26-72 (106)
14 2eqz_A High mobility group pro 97.8 3.4E-05 1.2E-09 54.9 5.6 47 118-164 12-60 (86)
15 3f27_D Transcription factor SO 97.8 2.9E-05 9.9E-10 54.4 5.1 46 119-164 4-49 (83)
16 1ckt_A High mobility group 1 p 97.8 3.6E-05 1.2E-09 52.4 5.3 44 121-164 1-46 (71)
17 1i11_A Transcription factor SO 97.8 4.3E-05 1.5E-09 53.6 5.8 44 121-164 4-47 (81)
18 4a3n_A Transcription factor SO 97.7 4E-05 1.4E-09 51.9 4.9 44 121-164 2-45 (71)
19 1gt0_D Transcription factor SO 97.7 5.4E-05 1.8E-09 52.9 5.6 44 121-164 2-45 (80)
20 2gzk_A Sex-determining region 97.6 7.5E-05 2.6E-09 57.9 5.8 47 118-164 85-131 (159)
21 1aab_A High mobility group pro 97.6 4.1E-05 1.4E-09 53.9 3.3 47 118-164 4-52 (83)
22 2yrq_A High mobility group pro 97.6 0.0001 3.5E-09 58.2 5.7 47 118-164 98-144 (173)
23 2lhj_A High mobility group pro 97.6 3.4E-05 1.2E-09 56.2 2.7 47 118-164 19-67 (97)
24 3u2b_C Transcription factor SO 97.6 0.00011 3.6E-09 51.0 5.1 43 122-164 3-45 (79)
25 2lef_A LEF-1 HMG, protein (lym 97.5 0.00015 5.2E-09 51.4 5.6 44 122-165 3-46 (86)
26 2d7l_A WD repeat and HMG-box D 97.5 0.00019 6.5E-09 51.7 5.9 46 119-164 3-49 (81)
27 1cg7_A Protein (NON histone pr 97.5 2.3E-05 7.8E-10 56.8 1.0 47 118-164 17-63 (93)
28 2yrq_A High mobility group pro 97.4 0.00025 8.5E-09 56.0 5.8 48 118-165 12-61 (173)
29 3tq6_A Transcription factor A, 97.2 0.00035 1.2E-08 57.8 4.5 47 118-164 6-52 (214)
30 3tmm_A Transcription factor A, 97.1 0.0004 1.4E-08 58.2 4.5 47 118-164 38-84 (238)
31 1l8y_A Upstream binding factor 96.9 0.0012 4.1E-08 49.4 5.2 43 121-164 4-46 (91)
32 2gzk_A Sex-determining region 96.9 0.0015 5.1E-08 50.6 5.5 47 119-165 2-48 (159)
33 3fgh_A Transcription factor A, 96.8 0.00097 3.3E-08 45.1 3.2 40 121-164 2-41 (67)
34 2yuk_A Myeloid/lymphoid or mix 96.3 0.00086 2.9E-08 49.9 0.8 44 119-164 20-63 (90)
35 1v63_A Nucleolar transcription 96.3 0.0066 2.3E-07 44.8 5.5 44 120-165 7-50 (101)
36 1v64_A Nucleolar transcription 96.0 0.0063 2.2E-07 45.5 4.3 44 118-165 13-57 (108)
37 3tmm_A Transcription factor A, 95.3 0.0038 1.3E-07 52.3 0.7 42 119-164 144-185 (238)
38 3tq6_A Transcription factor A, 95.3 0.0039 1.3E-07 51.4 0.7 43 118-164 111-153 (214)
39 2cto_A Novel protein; high mob 93.4 0.048 1.7E-06 40.4 2.9 44 119-164 8-54 (93)
40 1x0t_A Ribonuclease P protein 64.6 2.4 8.1E-05 32.4 1.4 33 17-49 67-104 (120)
41 2k3r_A Ribonuclease P protein 61.8 2.5 8.7E-05 32.5 1.1 34 17-50 62-100 (123)
42 2fiy_A Protein FDHE homolog; F 55.9 3.4 0.00012 36.3 1.0 28 11-48 204-231 (309)
43 1wii_A Hypothetical UPF0222 pr 51.4 7.1 0.00024 28.7 1.9 44 15-58 23-66 (85)
44 2d74_B Translation initiation 31.9 19 0.00063 28.8 1.6 36 14-55 103-141 (148)
45 2ysj_A Tripartite motif-contai 31.5 34 0.0012 21.5 2.6 21 15-44 20-40 (63)
46 2e2z_A TIM15; protein import, 26.6 25 0.00084 26.9 1.4 39 17-55 15-56 (100)
47 2g2k_A EIF-5, eukaryotic trans 23.1 46 0.0016 27.2 2.5 38 14-55 95-135 (170)
48 2ysl_A Tripartite motif-contai 20.5 63 0.0022 20.6 2.4 22 15-45 20-41 (73)
49 3j20_W 30S ribosomal protein S 20.4 37 0.0013 23.9 1.2 12 16-27 35-46 (63)
50 2e9h_A EIF-5, eukaryotic trans 20.1 45 0.0015 26.9 1.8 38 14-55 102-142 (157)
No 1
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=98.11 E-value=4.3e-06 Score=58.87 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 116 STTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 116 ~kPPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
..+|.+..|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 3478888999999999999999999999999999999999999999765
No 2
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.07 E-value=6.2e-06 Score=57.16 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=43.7
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++.-..|++++|+++..|.-..++..|+..+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 57777899999999999999999999999999999999999999754
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.01 E-value=8.6e-06 Score=56.31 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=41.0
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 3 ~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 3 KPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 45788999999999999999999999999999999999999864
No 4
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.98 E-value=1.5e-05 Score=57.55 Aligned_cols=48 Identities=17% Similarity=0.430 Sum_probs=44.7
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 117 TTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 117 kPPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+-|.+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 467788899999999999999999999999999999999999999765
No 5
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=1.9e-05 Score=57.04 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=43.7
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
.|.+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 51 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSE 51 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 566677899999999999999999999999999999999999997653
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.93 E-value=1.2e-05 Score=55.64 Aligned_cols=46 Identities=13% Similarity=0.355 Sum_probs=41.9
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|.+..|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 5566789999999999999999999999999999999999999754
No 7
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.90 E-value=1.4e-05 Score=57.59 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=43.7
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
.|.+..|-+|||..|+++.-..|+++||++++.|.-..++..|+..+
T Consensus 17 dp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 17 GSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp CCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 67777889999999999999999999999999999999999999754
No 8
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.90 E-value=1.8e-05 Score=54.66 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=41.6
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHF 163 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~ 163 (197)
|.+..|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 455678899999999999999999999999999999999999975
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.90 E-value=1.6e-05 Score=56.94 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=43.6
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-++||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 14 dp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 56777889999999999999999999999999999999999999754
No 10
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.88 E-value=2e-05 Score=58.14 Aligned_cols=47 Identities=28% Similarity=0.476 Sum_probs=43.6
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
.|.+..|-++||..|+++.-..|+++||+++..|.-..++..|+..+
T Consensus 14 dp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 56777889999999999999999999999999999999999999765
No 11
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.87 E-value=2.3e-05 Score=55.70 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=42.7
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
|.+..|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+.
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
Confidence 45667889999999999999999999999999999999999997653
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.81 E-value=2.7e-05 Score=57.41 Aligned_cols=48 Identities=17% Similarity=0.366 Sum_probs=44.3
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 117 TTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 117 kPPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+.|.+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 367778899999999999999999999999999999999999999754
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.80 E-value=3.3e-05 Score=57.58 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=42.6
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
.|.+..|-++||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 26 ~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 26 NKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 67778899999999999999999999999999999999999998765
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=3.4e-05 Score=54.91 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=42.0
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~h--kEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++.-..|+++||+++. .|.-..++..|+..+
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 46666788999999999999999999999974 999999999999754
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.79 E-value=2.9e-05 Score=54.45 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=40.6
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+.|-.|-++||..|+++.-..|++++|++++.|.-..++..|+..+
T Consensus 4 ~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 4 TSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 4566789999999999999999999999999999999999998754
No 16
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.78 E-value=3.6e-05 Score=52.37 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=39.6
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~h--kEaFs~aAknW~~~P 164 (197)
|..|-+|||..|+++.-+.|++.||+++. .|.-+.++..|+..+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 45688999999999999999999999976 999999999998643
No 17
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.78 E-value=4.3e-05 Score=53.58 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=40.8
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+..|-++||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 45678999999999999999999999999999999999999764
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.73 E-value=4e-05 Score=51.87 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=38.9
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|-.|-+|||..|+++.-..|++.+|++++.|.-+.++..|+..+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999999999998754
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.72 E-value=5.4e-05 Score=52.85 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=40.7
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
+..|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 2 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999754
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.64 E-value=7.5e-05 Score=57.95 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=43.2
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++.-..|+++||+++..|.-..++..|+..+
T Consensus 85 dp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 85 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 56667889999999999999999999999999999999999999754
No 21
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.58 E-value=4.1e-05 Score=53.92 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=42.3
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISH--REAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~h--kEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++.-..|+++||+++. .|.-+.++..|+..+
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 52 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMS 52 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 56777889999999999999999999999975 999999999998754
No 22
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0001 Score=58.20 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=43.3
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++....|++++|+++..|.-..++..|+..+
T Consensus 98 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 98 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 46677888999999999999999999999999999999999999754
No 23
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.56 E-value=3.4e-05 Score=56.16 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=43.7
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDIS--HREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~--hkEaFs~aAknW~~~P 164 (197)
.|.+..|-+|||..|+++.-..|+++||+++ ..|.-..++..|+..+
T Consensus 19 dp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 67 (97)
T 2lhj_A 19 DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALS 67 (97)
T ss_dssp CCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCC
Confidence 6777889999999999999999999999999 9999999999999753
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.56 E-value=0.00011 Score=50.97 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=39.8
Q ss_pred cCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 122 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 122 RQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-.|-++||..|+++.-..|++++|++++.|.-..++..|+..+
T Consensus 3 iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 3 IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999999999999998754
No 25
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.52 E-value=0.00015 Score=51.41 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=40.5
Q ss_pred cCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 122 RQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 122 RQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
-.|-+|||..|+++.-..|++++|++++.|.-..++..|+..+.
T Consensus 3 pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~ 46 (86)
T 2lef_A 3 IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSR 46 (86)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCH
Confidence 45789999999999999999999999999999999999997653
No 26
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00019 Score=51.69 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.3
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDIS-HREAFSTAAKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~-hkEaFs~aAknW~~~P 164 (197)
|.+..|-+|||..|+++.-..|+++||+++ ..|.-+.++..|+..+
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 344567899999999999999999999998 9999999999999754
No 27
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.50 E-value=2.3e-05 Score=56.82 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=43.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
.|.+..|-+|||..|+++.-..|+++||+++..|.-..++..|+..+
T Consensus 17 dp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 67777889999999999999999999999999999999999999753
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00025 Score=55.95 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=43.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPD--ISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~--i~hkEaFs~aAknW~~~Ph 165 (197)
-|.+..|-+|||..|+++....|++.||+ ++..|....++..|+..+.
T Consensus 12 dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 61 (173)
T 2yrq_A 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61 (173)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 56777889999999999999999999999 6899999999999987654
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.16 E-value=0.00035 Score=57.77 Aligned_cols=47 Identities=30% Similarity=0.510 Sum_probs=43.1
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
.|.+..|-+|||..|+++....|+++||+++..|....++..|+..+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 45666789999999999999999999999999999999999999765
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0004 Score=58.24 Aligned_cols=47 Identities=30% Similarity=0.510 Sum_probs=43.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++....|+++||+++..|....++..|+..+
T Consensus 38 ~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 38 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 46777889999999999999999999999999999999999999754
No 31
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.93 E-value=0.0012 Score=49.43 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=39.0
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|..|-+|||+.|+++....+++.+|+ +..|.-+.++..|+...
T Consensus 4 kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls 46 (91)
T 1l8y_A 4 LPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNME 46 (91)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999 99999999999998753
No 32
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.86 E-value=0.0015 Score=50.56 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=43.0
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
|++..|-++||-.|++++-.+|++.||+++..|....++..|+..+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~ 48 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTE 48 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhH
Confidence 56777889999999999999999999999999999999999997654
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.76 E-value=0.00097 Score=45.06 Aligned_cols=40 Identities=35% Similarity=0.679 Sum_probs=35.2
Q ss_pred ccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 121 KRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 121 KRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|..|-+|||..|+++.-..++..+| .|..+.++..|+..+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 3467889999999999999999887 599999999999754
No 34
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.32 E-value=0.00086 Score=49.91 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|-+..|.||||-.|+.++-.+||++||+++ +.|..+++.|+..+
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 334467899999999999999999999984 44666679998754
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.29 E-value=0.0066 Score=44.83 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=34.3
Q ss_pred cccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 120 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 120 EKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
.+..|-+|||..|+++.+. +..+++++..|..+.++..|+..+.
T Consensus 7 ~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 7 GPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp SSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 3445679999999999964 3345567889999999999997543
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.04 E-value=0.0063 Score=45.53 Aligned_cols=44 Identities=16% Similarity=0.423 Sum_probs=37.9
Q ss_pred CCccc-CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC
Q 029214 118 TPEKR-QRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 165 (197)
Q Consensus 118 PPEKR-QR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~Ph 165 (197)
-|.+. .|-+|||..|+++.-..|+ +++..|..+.++..|+..+.
T Consensus 13 d~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 13 FDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp TTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 44555 6789999999999999888 89999999999999998653
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=95.32 E-value=0.0038 Score=52.25 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.2
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
|.+..|-+|||+.|+++...+|+.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 5667889999999999999999988876 89999999999764
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=95.29 E-value=0.0039 Score=51.42 Aligned_cols=43 Identities=33% Similarity=0.593 Sum_probs=37.6
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029214 118 TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 164 (197)
Q Consensus 118 PPEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~aAknW~~~P 164 (197)
-|.+..|-+|||..|+++....|+..+|+ |..+.++..|+..+
T Consensus 111 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred cccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 35666889999999999999999988876 89999999999865
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.41 E-value=0.048 Score=40.36 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=36.9
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccCC
Q 029214 119 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTA---AKNWAHFP 164 (197)
Q Consensus 119 PEKRQR~PSaYN~FmK~ei~riK~~~P~i~hkEaFs~a---AknW~~~P 164 (197)
+.+..|-+|||..|+++.-.+||.+ +++..|.=+.+ +..|+...
T Consensus 8 ~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls 54 (93)
T 2cto_A 8 MPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLR 54 (93)
T ss_dssp CCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC
Confidence 4455688999999999999999998 78888887777 99998753
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=64.64 E-value=2.4 Score=32.39 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=24.8
Q ss_pred cCCCcceeeeccccCCC-cc----ceeeeecCCCCCcc
Q 029214 17 PCNFCNIVLAVSVPCSS-LL----DIVTVRCGHCSNLW 49 (197)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~----~tVTVRCGHCtnLl 49 (197)
-|.-|+++|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIM 104 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999997776541 21 25899999998754
No 41
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=61.85 E-value=2.5 Score=32.48 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=25.0
Q ss_pred cCCCcceeeeccccCCC-cc----ceeeeecCCCCCccc
Q 029214 17 PCNFCNIVLAVSVPCSS-LL----DIVTVRCGHCSNLWS 50 (197)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~----~tVTVRCGHCtnLlS 50 (197)
-|.-|+++|.=|+=|+- +- ..|.++|++|.+.--
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 69999999987765541 11 358999999987643
No 42
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.86 E-value=3.4 Score=36.27 Aligned_cols=28 Identities=29% Similarity=0.841 Sum_probs=22.7
Q ss_pred CceeeecCCCcceeeeccccCCCccceeeeecCCCCCc
Q 029214 11 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNL 48 (197)
Q Consensus 11 E~lCYV~CnfC~TILaVsVPcssL~~tVTVRCGHCtnL 48 (197)
+..=|.+|++|.|- ...|-++|.+|.|-
T Consensus 204 ~G~R~l~Cs~C~t~----------W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 204 TGLRYLSCSLCACE----------WHYVRIKCSHCEES 231 (309)
T ss_dssp CCEEEEEETTTCCE----------EECCTTSCSSSCCC
T ss_pred CCcEEEEeCCCCCE----------EeecCcCCcCCCCC
Confidence 44559999999885 47788999999995
No 43
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=51.43 E-value=7.1 Score=28.71 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=35.2
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCCCCCccccccchhcc
Q 029214 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQ 58 (197)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGHCtnLlSVNmr~llq 58 (197)
+-.|-|||..=+|+|=...--.+-++.|+-|.---..++..|.+
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~e 66 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSE 66 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCC
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCc
Confidence 45899999998888888888889999999998766555555433
No 44
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=31.91 E-value=19 Score=28.85 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=27.3
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCccccccch
Q 029214 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (197)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlSVNmr~ 55 (197)
-||.|.-| +|.|.+- + .+...+|.-|..-.+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 5777762 2 56778999999999988764
No 45
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.48 E-value=34 Score=21.51 Aligned_cols=21 Identities=38% Similarity=0.820 Sum_probs=14.5
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCC
Q 029214 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGH 44 (197)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGH 44 (197)
...|..|..++. +.|+..|||
T Consensus 20 ~~~C~IC~~~~~---------~p~~~~CgH 40 (63)
T 2ysj_A 20 EVICPICLDILQ---------KPVTIDCGH 40 (63)
T ss_dssp CCBCTTTCSBCS---------SCEECTTSS
T ss_pred CCCCCcCCchhC---------CeEEeCCCC
Confidence 356888876543 456779999
No 46
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=26.58 E-value=25 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=22.5
Q ss_pred cCCCcceeeeccccCCC-ccceeeeecCCCCCc--cccccch
Q 029214 17 PCNFCNIVLAVSVPCSS-LLDIVTVRCGHCSNL--WSVNMAA 55 (197)
Q Consensus 17 ~CnfC~TILaVsVPcss-L~~tVTVRCGHCtnL--lSVNmr~ 55 (197)
-|+-|+|-=+-.+-=.. =--+|-|+|..|.|. ..=|++-
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgw 56 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKI 56 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCS
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhh
Confidence 47888775432221111 124799999999995 3334443
No 47
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.05 E-value=46 Score=27.20 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=28.6
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCccccccch
Q 029214 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (197)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlSVNmr~ 55 (197)
-||.|.-| +|.|.+.. -. .+...+|--|....+|.++.
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~~ 135 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTHH 135 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCcccccccc
Confidence 48999999 57887621 12 34668999999999998863
No 48
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.53 E-value=63 Score=20.58 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=15.4
Q ss_pred eecCCCcceeeeccccCCCccceeeeecCCC
Q 029214 15 YIPCNFCNIVLAVSVPCSSLLDIVTVRCGHC 45 (197)
Q Consensus 15 YV~CnfC~TILaVsVPcssL~~tVTVRCGHC 45 (197)
...|.-|...+. +.|+..|||-
T Consensus 20 ~~~C~IC~~~~~---------~~~~~~CgH~ 41 (73)
T 2ysl_A 20 EVICPICLDILQ---------KPVTIDCGHN 41 (73)
T ss_dssp CCBCTTTCSBCS---------SEEECTTCCE
T ss_pred CCEeccCCcccC---------CeEEcCCCCh
Confidence 457888876553 4667789994
No 49
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.45 E-value=37 Score=23.94 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=10.0
Q ss_pred ecCCCcceeeec
Q 029214 16 IPCNFCNIVLAV 27 (197)
Q Consensus 16 V~CnfC~TILaV 27 (197)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 789999999873
No 50
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.13 E-value=45 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=28.2
Q ss_pred eeecCCCc---ceeeeccccCCCccceeeeecCCCCCccccccch
Q 029214 14 CYIPCNFC---NIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAA 55 (197)
Q Consensus 14 CYV~CnfC---~TILaVsVPcssL~~tVTVRCGHCtnLlSVNmr~ 55 (197)
-||.|.-| +|.|.+. . ==.+...+|.-|....+|.++.
T Consensus 102 ~YVlC~~C~sPdT~L~~~-~---~~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 102 KFVLCPECENPETDLHVN-P---KKQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp HTTSCTTTCCSCCEEEEE-T---TTTEEEEECSSSCCEEECCCCS
T ss_pred HeEECCCCCCCccEEEEe-c---CCCEEEEEccCCCCCCcccchh
Confidence 48999999 4666652 0 1246788999999999998753
Done!