Query 029215
Match_columns 197
No_of_seqs 146 out of 1513
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.1E-41 8.9E-46 228.4 16.8 167 4-181 7-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 3E-40 6.4E-45 223.4 18.6 169 3-183 2-172 (200)
3 cd01875 RhoG RhoG subfamily. 100.0 1E-39 2.2E-44 231.8 21.7 188 5-197 2-191 (191)
4 cd04133 Rop_like Rop subfamily 100.0 5.2E-39 1.1E-43 224.5 22.1 174 7-180 2-175 (176)
5 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.2E-39 1.1E-43 232.4 20.8 176 5-180 12-190 (232)
6 cd04121 Rab40 Rab40 subfamily. 100.0 8.6E-39 1.9E-43 225.7 19.9 181 4-196 4-188 (189)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.7E-38 5.9E-43 222.2 21.0 176 4-179 3-181 (182)
8 cd04132 Rho4_like Rho4-like su 100.0 2.4E-38 5.3E-43 224.2 20.0 185 7-197 1-187 (187)
9 cd04134 Rho3 Rho3 subfamily. 100.0 6.9E-38 1.5E-42 222.1 21.8 186 8-197 2-189 (189)
10 cd04131 Rnd Rnd subfamily. Th 100.0 7.9E-38 1.7E-42 219.4 21.1 173 6-178 1-176 (178)
11 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.3E-38 9.3E-43 226.6 20.2 174 7-180 2-178 (222)
12 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2E-38 4.3E-43 214.7 17.0 165 5-181 21-188 (221)
13 cd04144 Ras2 Ras2 subfamily. 100.0 1.9E-38 4.2E-43 225.2 17.7 178 8-197 1-190 (190)
14 KOG0078 GTP-binding protein SE 100.0 3.9E-38 8.5E-43 216.9 17.3 166 4-181 10-177 (207)
15 PTZ00369 Ras-like protein; Pro 100.0 1.2E-37 2.6E-42 220.9 20.0 182 4-197 3-189 (189)
16 cd01874 Cdc42 Cdc42 subfamily. 100.0 6E-37 1.3E-41 214.6 21.2 172 6-177 1-174 (175)
17 KOG0098 GTPase Rab2, small G p 100.0 4.7E-38 1E-42 211.3 14.5 170 1-182 1-172 (216)
18 KOG0080 GTPase Rab18, small G 100.0 8.6E-38 1.9E-42 205.2 15.3 165 5-181 10-177 (209)
19 cd04120 Rab12 Rab12 subfamily. 100.0 6.2E-37 1.4E-41 218.2 19.7 162 7-180 1-165 (202)
20 KOG0394 Ras-related GTPase [Ge 100.0 2.7E-37 6E-42 207.2 16.2 170 4-182 7-182 (210)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1E-36 2.3E-41 212.9 19.0 164 6-181 2-167 (172)
22 KOG0079 GTP-binding protein H- 100.0 5.2E-38 1.1E-42 203.5 10.9 163 6-180 8-171 (198)
23 cd01871 Rac1_like Rac1-like su 100.0 3.5E-36 7.5E-41 210.6 20.6 171 6-176 1-173 (174)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.4E-36 7.3E-41 215.5 20.2 164 7-181 1-171 (201)
25 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-35 3.9E-40 205.7 19.7 162 6-179 2-165 (166)
26 cd04110 Rab35 Rab35 subfamily. 100.0 2E-35 4.4E-40 211.0 20.3 164 5-180 5-169 (199)
27 smart00174 RHO Rho (Ras homolo 100.0 3.9E-35 8.4E-40 205.5 21.0 171 9-179 1-173 (174)
28 cd04109 Rab28 Rab28 subfamily. 100.0 2E-35 4.3E-40 213.4 19.8 161 7-179 1-167 (215)
29 cd04136 Rap_like Rap-like subf 100.0 3E-35 6.4E-40 203.9 19.5 159 7-177 2-162 (163)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 2.9E-35 6.3E-40 204.3 19.0 161 6-178 1-163 (164)
31 cd04125 RabA_like RabA-like su 100.0 4E-35 8.6E-40 207.9 19.5 178 7-196 1-187 (188)
32 cd01867 Rab8_Rab10_Rab13_like 100.0 8.2E-35 1.8E-39 202.6 19.6 163 5-179 2-166 (167)
33 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.7E-35 3.7E-40 203.0 15.5 165 5-181 13-179 (222)
34 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 2.9E-40 192.1 13.7 166 5-182 20-187 (193)
35 cd04117 Rab15 Rab15 subfamily. 100.0 1.3E-34 2.8E-39 200.4 19.4 158 7-176 1-160 (161)
36 cd01865 Rab3 Rab3 subfamily. 100.0 1.9E-34 4.2E-39 200.4 20.0 161 7-179 2-164 (165)
37 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-34 2.9E-39 205.6 19.2 163 7-181 1-166 (191)
38 cd04135 Tc10 TC10 subfamily. 100.0 4.7E-34 1E-38 200.0 21.6 172 7-178 1-174 (174)
39 PLN03071 GTP-binding nuclear p 100.0 2.3E-34 4.9E-39 208.1 20.5 163 4-180 11-174 (219)
40 cd04126 Rab20 Rab20 subfamily. 100.0 1.1E-34 2.5E-39 208.7 18.6 169 7-179 1-191 (220)
41 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-34 3.2E-39 203.6 18.8 163 5-179 3-178 (180)
42 KOG0393 Ras-related small GTPa 100.0 2.2E-35 4.9E-40 204.1 13.7 179 4-182 2-183 (198)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.2E-34 7E-39 199.4 19.7 161 6-178 2-164 (166)
44 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.1E-34 1.3E-38 199.3 21.0 169 7-175 1-171 (173)
45 smart00173 RAS Ras subfamily o 100.0 2.6E-34 5.6E-39 199.5 18.9 160 7-178 1-162 (164)
46 cd04142 RRP22 RRP22 subfamily. 100.0 5E-34 1.1E-38 203.2 20.8 179 7-197 1-198 (198)
47 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.3E-34 9.3E-39 201.2 20.2 167 7-181 1-169 (182)
48 cd04176 Rap2 Rap2 subgroup. T 100.0 3.1E-34 6.7E-39 198.9 19.1 160 6-177 1-162 (163)
49 cd00877 Ran Ran (Ras-related n 100.0 6.4E-34 1.4E-38 197.8 20.4 161 7-181 1-162 (166)
50 cd04140 ARHI_like ARHI subfami 100.0 4.9E-34 1.1E-38 198.3 19.2 158 7-176 2-163 (165)
51 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.8E-34 1.3E-38 197.1 19.3 159 6-177 1-161 (162)
52 cd04124 RabL2 RabL2 subfamily. 100.0 8.4E-34 1.8E-38 196.3 20.0 159 7-180 1-160 (161)
53 cd04129 Rho2 Rho2 subfamily. 100.0 1.7E-33 3.8E-38 199.2 21.9 186 7-197 2-187 (187)
54 PF00071 Ras: Ras family; Int 100.0 3.5E-34 7.5E-39 198.4 17.9 159 8-178 1-161 (162)
55 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7E-34 1.5E-38 197.2 19.2 160 6-177 2-163 (164)
56 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-33 3.2E-38 200.7 21.2 166 7-180 1-168 (193)
57 cd04106 Rab23_lke Rab23-like s 100.0 5.5E-34 1.2E-38 197.4 18.5 158 7-176 1-161 (162)
58 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-33 3.3E-38 200.0 20.7 168 6-176 2-194 (195)
59 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-33 2.4E-38 196.5 19.4 161 5-176 2-164 (165)
60 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-33 2.5E-38 196.7 19.1 160 7-178 1-167 (168)
61 cd01870 RhoA_like RhoA-like su 100.0 3.8E-33 8.3E-38 195.5 21.4 171 7-177 2-174 (175)
62 cd04116 Rab9 Rab9 subfamily. 100.0 3E-33 6.6E-38 195.2 19.9 162 3-176 2-169 (170)
63 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-33 3.9E-38 202.4 18.8 163 6-180 2-168 (211)
64 PLN03108 Rab family protein; P 100.0 2.6E-33 5.7E-38 201.6 19.5 169 1-181 1-171 (210)
65 KOG0091 GTPase Rab39, small G 100.0 1.2E-34 2.7E-39 190.8 11.3 165 5-181 7-176 (213)
66 KOG0086 GTPase Rab4, small G p 100.0 2.4E-34 5.1E-39 187.6 12.4 165 5-181 8-174 (214)
67 cd04113 Rab4 Rab4 subfamily. 100.0 2.9E-33 6.2E-38 193.7 18.7 159 7-177 1-161 (161)
68 cd01868 Rab11_like Rab11-like. 100.0 4.1E-33 8.9E-38 193.6 19.6 161 5-177 2-164 (165)
69 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.9E-33 8.4E-38 194.5 19.2 162 8-179 2-166 (170)
70 PLN03110 Rab GTPase; Provision 100.0 2.5E-33 5.5E-38 202.4 18.9 163 5-179 11-175 (216)
71 cd01866 Rab2 Rab2 subfamily. 100.0 5.7E-33 1.2E-37 193.5 19.9 163 5-179 3-167 (168)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 8.3E-33 1.8E-37 192.7 19.8 161 7-178 2-164 (168)
73 smart00176 RAN Ran (Ras-relate 100.0 4.7E-33 1E-37 198.0 18.7 155 12-180 1-156 (200)
74 cd04103 Centaurin_gamma Centau 100.0 7.3E-33 1.6E-37 190.8 19.1 155 7-176 1-157 (158)
75 KOG0095 GTPase Rab30, small G 100.0 2.2E-34 4.9E-39 187.1 10.8 163 5-179 6-170 (213)
76 KOG0088 GTPase Rab21, small G 100.0 2.2E-34 4.7E-39 188.8 10.7 166 4-181 11-178 (218)
77 cd04143 Rhes_like Rhes_like su 100.0 7.2E-33 1.6E-37 203.0 19.7 162 7-179 1-172 (247)
78 cd04146 RERG_RasL11_like RERG/ 100.0 4E-33 8.7E-38 193.7 17.5 159 8-178 1-164 (165)
79 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.6E-33 2.1E-37 192.7 19.5 160 6-177 2-168 (170)
80 cd01892 Miro2 Miro2 subfamily. 100.0 1E-32 2.3E-37 192.2 18.9 165 3-179 1-167 (169)
81 cd04137 RheB Rheb (Ras Homolog 100.0 1.4E-32 3.1E-37 193.6 18.1 177 7-197 2-180 (180)
82 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.6E-32 5.5E-37 189.4 18.9 159 7-177 1-163 (164)
83 cd00157 Rho Rho (Ras homology) 100.0 5.6E-32 1.2E-36 188.9 20.4 169 7-175 1-170 (171)
84 smart00175 RAB Rab subfamily o 100.0 4.1E-32 8.9E-37 188.3 19.2 161 7-179 1-163 (164)
85 KOG0395 Ras-related GTPase [Ge 100.0 1.5E-32 3.3E-37 193.9 16.5 163 5-179 2-166 (196)
86 cd01862 Rab7 Rab7 subfamily. 100.0 6.2E-32 1.3E-36 188.8 19.2 164 7-181 1-170 (172)
87 cd01861 Rab6 Rab6 subfamily. 100.0 6.9E-32 1.5E-36 186.7 19.0 158 7-176 1-160 (161)
88 cd01860 Rab5_related Rab5-rela 100.0 1.1E-31 2.3E-36 186.1 19.3 160 6-177 1-162 (163)
89 PLN03118 Rab family protein; P 100.0 1.1E-31 2.4E-36 193.4 20.0 165 5-181 13-180 (211)
90 cd04123 Rab21 Rab21 subfamily. 100.0 1.5E-31 3.3E-36 184.9 19.6 159 7-177 1-161 (162)
91 cd04148 RGK RGK subfamily. Th 100.0 1.1E-31 2.3E-36 194.4 19.6 160 7-180 1-165 (221)
92 cd04139 RalA_RalB RalA/RalB su 100.0 2E-31 4.4E-36 184.7 19.3 160 7-178 1-162 (164)
93 cd01863 Rab18 Rab18 subfamily. 100.0 2.9E-31 6.3E-36 183.6 19.9 157 7-176 1-160 (161)
94 cd01893 Miro1 Miro1 subfamily. 100.0 7.5E-31 1.6E-35 182.5 18.9 164 7-179 1-165 (166)
95 cd04114 Rab30 Rab30 subfamily. 100.0 1.6E-30 3.4E-35 181.3 20.4 165 1-177 1-168 (169)
96 cd04149 Arf6 Arf6 subfamily. 100.0 4.9E-31 1.1E-35 183.6 16.3 156 4-175 7-167 (168)
97 cd00876 Ras Ras family. The R 100.0 7.8E-31 1.7E-35 181.0 17.1 158 8-177 1-160 (160)
98 cd04147 Ras_dva Ras-dva subfam 100.0 1.5E-30 3.2E-35 185.8 19.0 161 8-179 1-164 (198)
99 PLN00223 ADP-ribosylation fact 100.0 4.8E-31 1E-35 185.6 16.2 158 4-180 15-180 (181)
100 KOG0081 GTPase Rab27, small G 100.0 2.7E-33 5.9E-38 183.8 4.3 166 6-183 9-186 (219)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5.8E-31 1.3E-35 185.7 16.4 163 5-181 2-173 (183)
102 cd00154 Rab Rab family. Rab G 100.0 3E-30 6.5E-35 177.6 17.8 157 7-175 1-159 (159)
103 PTZ00133 ADP-ribosylation fact 100.0 1.9E-30 4.1E-35 182.8 16.7 161 4-181 15-181 (182)
104 cd04158 ARD1 ARD1 subfamily. 100.0 3E-30 6.5E-35 179.9 17.2 157 8-181 1-164 (169)
105 smart00177 ARF ARF-like small 100.0 4.4E-30 9.5E-35 180.0 17.7 158 4-178 11-174 (175)
106 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.6E-32 3.4E-37 175.3 4.4 159 10-180 1-162 (192)
107 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.4E-31 9.6E-36 183.2 11.8 152 9-175 2-163 (164)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.6E-30 1.2E-34 176.8 16.5 152 7-175 1-158 (159)
109 PTZ00132 GTP-binding nuclear p 100.0 2.7E-29 5.9E-34 181.5 20.4 166 2-181 5-171 (215)
110 KOG0097 GTPase Rab14, small G 100.0 1.9E-30 4.1E-35 167.5 12.5 164 4-179 9-174 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 2.6E-29 5.6E-34 175.9 16.4 154 4-175 12-172 (173)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.4E-28 3.1E-33 172.2 16.6 154 5-175 14-173 (174)
113 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.1E-28 1.3E-32 171.7 18.1 150 7-164 1-176 (202)
114 cd04157 Arl6 Arl6 subfamily. 100.0 7.5E-29 1.6E-33 171.6 13.1 152 8-175 1-161 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.1E-29 1.3E-33 173.0 12.3 157 8-175 1-166 (167)
116 cd00879 Sar1 Sar1 subfamily. 100.0 3.4E-28 7.3E-33 172.7 16.0 157 4-177 17-190 (190)
117 cd04151 Arl1 Arl1 subfamily. 100.0 5.4E-28 1.2E-32 166.8 15.6 151 8-175 1-157 (158)
118 PF00025 Arf: ADP-ribosylation 100.0 1E-27 2.3E-32 167.7 17.0 159 3-177 11-175 (175)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1E-27 2.3E-32 166.7 15.7 152 8-175 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.3E-28 1.8E-32 166.1 15.0 152 8-175 1-159 (160)
121 smart00178 SAR Sar1p-like memb 100.0 3.2E-27 7E-32 166.7 16.0 157 4-176 15-183 (184)
122 KOG4252 GTP-binding protein [S 100.0 1.2E-29 2.5E-34 169.9 2.5 163 5-179 19-182 (246)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 7.7E-27 1.7E-31 160.9 16.5 151 8-175 1-157 (158)
124 PLN00023 GTP-binding protein; 100.0 5.8E-27 1.3E-31 174.5 16.9 147 4-155 19-192 (334)
125 PTZ00099 rab6; Provisional 100.0 1.4E-26 3E-31 161.9 16.9 141 29-181 3-145 (176)
126 cd01897 NOG NOG1 is a nucleola 99.9 3.8E-26 8.2E-31 159.0 16.6 155 8-178 2-168 (168)
127 cd04159 Arl10_like Arl10-like 99.9 6.1E-26 1.3E-30 156.1 16.0 151 9-175 2-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 3.2E-26 6.9E-31 161.0 14.8 156 8-179 2-178 (179)
129 KOG0073 GTP-binding ADP-ribosy 99.9 1.3E-25 2.7E-30 148.4 15.3 165 3-179 13-179 (185)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1.1E-25 2.3E-30 157.5 15.6 153 4-175 12-172 (173)
131 KOG0070 GTP-binding ADP-ribosy 99.9 2.4E-25 5.3E-30 150.6 14.3 162 3-180 14-180 (181)
132 TIGR00231 small_GTP small GTP- 99.9 7.8E-25 1.7E-29 150.3 16.5 157 6-174 1-160 (161)
133 cd01898 Obg Obg subfamily. Th 99.9 3E-25 6.5E-30 154.7 14.5 155 8-176 2-169 (170)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 4.3E-25 9.2E-30 167.9 16.1 161 7-180 159-330 (335)
135 COG1100 GTPase SAR1 and relate 99.9 1E-24 2.2E-29 158.1 16.5 178 6-183 5-190 (219)
136 TIGR02528 EutP ethanolamine ut 99.9 1.1E-25 2.4E-30 152.6 10.5 135 8-174 2-141 (142)
137 cd04171 SelB SelB subfamily. 99.9 1E-24 2.3E-29 151.0 13.7 153 8-175 2-163 (164)
138 TIGR00436 era GTP-binding prot 99.9 1.7E-24 3.6E-29 161.4 15.7 156 8-181 2-167 (270)
139 cd01878 HflX HflX subfamily. 99.9 1.1E-24 2.4E-29 156.2 14.2 155 4-177 39-204 (204)
140 PRK15494 era GTPase Era; Provi 99.9 2.7E-24 5.9E-29 164.4 16.9 161 2-181 48-219 (339)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.8E-24 6E-29 149.5 14.5 158 8-178 2-166 (168)
142 cd01879 FeoB Ferrous iron tran 99.9 1.2E-23 2.6E-28 144.8 15.4 147 11-177 1-156 (158)
143 cd00882 Ras_like_GTPase Ras-li 99.9 1.4E-23 3.1E-28 142.9 15.5 152 11-174 1-156 (157)
144 cd01894 EngA1 EngA1 subfamily. 99.9 7.8E-24 1.7E-28 145.5 13.8 147 10-177 1-157 (157)
145 KOG3883 Ras family small GTPas 99.9 9.7E-23 2.1E-27 133.4 16.4 168 5-184 8-181 (198)
146 TIGR02729 Obg_CgtA Obg family 99.9 2.3E-23 5.1E-28 158.3 15.7 158 6-177 157-328 (329)
147 PRK03003 GTP-binding protein D 99.9 1.4E-23 3E-28 167.3 14.7 160 5-178 210-382 (472)
148 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-23 2.3E-28 142.6 11.8 147 7-173 1-156 (156)
149 KOG0075 GTP-binding ADP-ribosy 99.9 2.3E-24 5E-29 140.0 8.1 155 6-178 20-182 (186)
150 PRK04213 GTP-binding protein; 99.9 5.1E-24 1.1E-28 152.5 10.6 156 5-181 8-195 (201)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.5E-23 7.6E-28 162.8 16.0 150 5-179 202-361 (442)
152 PF08477 Miro: Miro-like prote 99.9 1.6E-23 3.5E-28 137.7 11.7 114 8-121 1-119 (119)
153 TIGR03156 GTP_HflX GTP-binding 99.9 3.6E-23 7.8E-28 158.5 15.1 152 5-176 188-350 (351)
154 cd01881 Obg_like The Obg-like 99.9 2.8E-23 6.2E-28 145.4 13.4 152 11-176 1-175 (176)
155 PRK03003 GTP-binding protein D 99.9 2.6E-23 5.6E-28 165.8 14.5 153 6-179 38-200 (472)
156 cd01891 TypA_BipA TypA (tyrosi 99.9 6.8E-23 1.5E-27 145.9 15.1 148 7-168 3-172 (194)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.2E-23 2E-27 140.1 15.0 145 7-177 2-156 (157)
158 cd00881 GTP_translation_factor 99.9 3.5E-23 7.5E-28 146.5 12.8 157 8-178 1-187 (189)
159 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-22 3E-27 160.5 17.4 157 5-178 171-344 (429)
160 PRK05291 trmE tRNA modificatio 99.9 4.7E-23 1E-27 162.9 14.5 148 5-179 214-371 (449)
161 cd04163 Era Era subfamily. Er 99.9 8.2E-23 1.8E-27 141.5 13.8 155 6-176 3-167 (168)
162 TIGR00487 IF-2 translation ini 99.9 2.4E-22 5.1E-27 162.6 16.7 154 5-176 86-248 (587)
163 PRK00089 era GTPase Era; Revie 99.9 2.5E-22 5.4E-27 151.5 15.4 161 5-181 4-174 (292)
164 cd01895 EngA2 EngA2 subfamily. 99.9 9.4E-22 2E-26 137.2 17.2 155 6-176 2-173 (174)
165 TIGR01393 lepA GTP-binding pro 99.9 2.2E-22 4.7E-27 163.5 15.8 160 6-181 3-183 (595)
166 PRK12297 obgE GTPase CgtA; Rev 99.9 6.9E-22 1.5E-26 153.9 17.0 158 7-181 159-330 (424)
167 PRK15467 ethanolamine utilizat 99.9 2.5E-22 5.4E-27 138.3 12.3 142 8-180 3-149 (158)
168 cd01889 SelB_euk SelB subfamil 99.9 1.8E-22 3.8E-27 143.5 11.9 162 7-180 1-188 (192)
169 KOG0071 GTP-binding ADP-ribosy 99.9 5.9E-22 1.3E-26 127.9 12.9 158 4-178 15-178 (180)
170 PRK00093 GTP-binding protein D 99.9 3.8E-22 8.2E-27 158.3 14.6 150 7-177 2-161 (435)
171 TIGR03594 GTPase_EngA ribosome 99.9 3.1E-22 6.6E-27 158.6 14.0 152 8-180 1-162 (429)
172 KOG0076 GTP-binding ADP-ribosy 99.9 2.9E-23 6.3E-28 138.6 6.6 165 1-180 12-189 (197)
173 PF00009 GTP_EFTU: Elongation 99.9 1.3E-21 2.8E-26 138.6 14.5 162 4-178 1-187 (188)
174 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-21 2.9E-26 154.2 15.7 161 6-181 159-343 (500)
175 COG1159 Era GTPase [General fu 99.9 1.4E-21 2.9E-26 142.3 14.4 164 2-181 2-175 (298)
176 cd01888 eIF2_gamma eIF2-gamma 99.9 7.3E-22 1.6E-26 141.4 12.9 117 54-181 83-202 (203)
177 CHL00189 infB translation init 99.9 8.9E-22 1.9E-26 161.6 14.8 157 4-177 242-409 (742)
178 PRK11058 GTPase HflX; Provisio 99.9 2.1E-21 4.5E-26 152.1 16.1 156 7-179 198-363 (426)
179 PRK00454 engB GTP-binding prot 99.9 1.3E-21 2.9E-26 139.4 13.8 161 3-178 21-194 (196)
180 cd04105 SR_beta Signal recogni 99.9 3.9E-22 8.4E-27 142.6 10.8 118 8-125 2-124 (203)
181 PRK05306 infB translation init 99.9 3.4E-21 7.5E-26 159.4 17.1 159 4-176 288-450 (787)
182 TIGR03598 GTPase_YsxC ribosome 99.9 6.4E-22 1.4E-26 139.1 11.0 151 2-167 14-179 (179)
183 PRK12298 obgE GTPase CgtA; Rev 99.9 4.5E-21 9.7E-26 148.6 15.4 161 7-180 160-335 (390)
184 PRK09518 bifunctional cytidyla 99.9 2E-21 4.4E-26 161.6 14.0 157 5-179 449-622 (712)
185 PRK00093 GTP-binding protein D 99.9 4.4E-21 9.6E-26 152.2 15.3 160 5-178 172-344 (435)
186 TIGR00475 selB selenocysteine- 99.9 5.4E-21 1.2E-25 155.3 15.2 160 7-180 1-168 (581)
187 PRK05433 GTP-binding protein L 99.9 6.1E-21 1.3E-25 155.2 15.3 164 2-181 3-187 (600)
188 TIGR00491 aIF-2 translation in 99.9 4E-21 8.8E-26 155.3 14.0 167 5-178 3-216 (590)
189 PRK09518 bifunctional cytidyla 99.9 8.4E-21 1.8E-25 157.9 15.9 153 6-179 275-437 (712)
190 COG1160 Predicted GTPases [Gen 99.9 6.8E-21 1.5E-25 145.9 14.1 151 7-178 4-165 (444)
191 TIGR00437 feoB ferrous iron tr 99.9 7.1E-21 1.5E-25 154.7 15.0 145 13-177 1-154 (591)
192 cd01896 DRG The developmentall 99.9 9E-20 2E-24 132.9 17.8 149 8-177 2-225 (233)
193 PRK12317 elongation factor 1-a 99.9 7.2E-21 1.6E-25 150.3 12.7 161 1-170 1-197 (425)
194 cd00880 Era_like Era (E. coli 99.9 1.7E-20 3.7E-25 128.8 12.7 151 11-176 1-162 (163)
195 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 3.5E-21 7.5E-26 130.5 8.9 162 5-180 9-171 (216)
196 PRK09554 feoB ferrous iron tra 99.9 6.1E-20 1.3E-24 152.6 18.2 153 5-177 2-167 (772)
197 KOG1673 Ras GTPases [General f 99.9 2.2E-20 4.8E-25 122.7 11.7 167 6-180 20-188 (205)
198 COG1160 Predicted GTPases [Gen 99.8 3.8E-19 8.2E-24 136.4 17.6 158 5-178 177-351 (444)
199 COG2229 Predicted GTPase [Gene 99.8 2.9E-19 6.4E-24 121.1 14.4 156 4-176 8-176 (187)
200 COG0486 ThdF Predicted GTPase 99.8 1.1E-19 2.4E-24 139.6 13.2 153 5-180 216-378 (454)
201 KOG0074 GTP-binding ADP-ribosy 99.8 7.3E-20 1.6E-24 118.4 10.1 156 4-177 15-178 (185)
202 TIGR00483 EF-1_alpha translati 99.8 1.2E-19 2.5E-24 143.4 13.4 157 3-168 4-197 (426)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.2E-19 2.7E-24 147.2 13.0 158 8-181 3-194 (594)
204 PRK10218 GTP-binding protein; 99.8 3.5E-19 7.7E-24 144.5 15.6 163 5-181 4-198 (607)
205 PF10662 PduV-EutP: Ethanolami 99.8 7.9E-20 1.7E-24 121.1 9.8 136 8-174 3-142 (143)
206 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.9E-19 6.3E-24 126.7 13.1 148 6-166 2-171 (195)
207 KOG0072 GTP-binding ADP-ribosy 99.8 2E-20 4.3E-25 121.4 6.1 160 5-180 17-181 (182)
208 PRK10512 selenocysteinyl-tRNA- 99.8 5.6E-19 1.2E-23 144.1 14.9 159 8-180 2-168 (614)
209 cd04168 TetM_like Tet(M)-like 99.8 3.6E-19 7.8E-24 129.9 12.2 168 8-179 1-236 (237)
210 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.9E-19 6.3E-24 128.4 11.6 151 8-169 1-185 (208)
211 TIGR03680 eif2g_arch translati 99.8 1.9E-19 4.1E-24 141.1 11.5 164 4-180 2-198 (406)
212 PRK04004 translation initiatio 99.8 8E-19 1.7E-23 142.5 14.8 167 4-177 4-217 (586)
213 cd04167 Snu114p Snu114p subfam 99.8 2.4E-19 5.1E-24 129.4 10.3 166 8-177 2-210 (213)
214 cd01876 YihA_EngB The YihA (En 99.8 6.2E-19 1.3E-23 122.3 12.1 155 8-177 1-170 (170)
215 KOG1707 Predicted Ras related/ 99.8 1E-19 2.2E-24 142.2 8.8 165 4-180 7-177 (625)
216 KOG1423 Ras-like GTPase ERA [C 99.8 2.6E-19 5.6E-24 130.3 9.9 173 4-181 70-274 (379)
217 PRK04000 translation initiatio 99.8 6.9E-19 1.5E-23 138.0 13.1 166 3-180 6-203 (411)
218 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.1E-18 6.6E-23 124.0 15.2 154 8-175 1-220 (224)
219 KOG4423 GTP-binding protein-li 99.8 1.4E-21 3E-26 132.0 -2.4 167 5-181 24-197 (229)
220 COG0370 FeoB Fe2+ transport sy 99.8 5E-18 1.1E-22 135.8 15.6 156 6-181 3-167 (653)
221 PRK12736 elongation factor Tu; 99.8 3.4E-18 7.3E-23 133.6 14.1 164 3-179 9-202 (394)
222 cd04104 p47_IIGP_like p47 (47- 99.8 4.4E-18 9.5E-23 121.3 12.1 170 6-183 1-189 (197)
223 cd01883 EF1_alpha Eukaryotic e 99.8 1.6E-18 3.4E-23 125.6 9.9 151 8-167 1-194 (219)
224 PRK12735 elongation factor Tu; 99.8 7.8E-18 1.7E-22 131.7 14.0 163 3-178 9-203 (396)
225 TIGR00485 EF-Tu translation el 99.8 6.4E-18 1.4E-22 132.2 13.2 149 3-164 9-179 (394)
226 cd01885 EF2 EF2 (for archaea a 99.8 1.2E-17 2.5E-22 120.5 12.0 112 8-123 2-138 (222)
227 CHL00071 tufA elongation facto 99.8 1.5E-17 3.2E-22 130.6 13.0 149 3-164 9-179 (409)
228 KOG1489 Predicted GTP-binding 99.7 5.6E-17 1.2E-21 118.8 13.8 155 7-176 197-365 (366)
229 COG1084 Predicted GTPase [Gene 99.7 1E-16 2.2E-21 118.1 14.7 160 5-180 167-338 (346)
230 KOG0462 Elongation factor-type 99.7 5.9E-17 1.3E-21 126.1 13.5 167 4-184 58-241 (650)
231 cd04169 RF3 RF3 subfamily. Pe 99.7 5.7E-17 1.2E-21 120.3 12.9 115 7-125 3-138 (267)
232 COG0532 InfB Translation initi 99.7 1.2E-16 2.6E-21 124.6 15.0 160 4-180 3-172 (509)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.9E-17 6.3E-22 118.5 10.0 166 8-181 1-179 (232)
234 PRK00049 elongation factor Tu; 99.7 1.3E-16 2.9E-21 124.7 14.1 162 4-178 10-203 (396)
235 cd01886 EF-G Elongation factor 99.7 5.1E-17 1.1E-21 120.7 11.1 111 8-124 1-130 (270)
236 PRK00741 prfC peptide chain re 99.7 9.8E-17 2.1E-21 128.9 13.5 116 5-124 9-145 (526)
237 PRK13351 elongation factor G; 99.7 8.7E-17 1.9E-21 133.9 12.2 115 4-125 6-140 (687)
238 PLN03127 Elongation factor Tu; 99.7 2.8E-16 6E-21 124.2 14.2 165 3-180 58-254 (447)
239 PLN03126 Elongation factor Tu; 99.7 2.1E-16 4.6E-21 125.5 13.2 149 3-164 78-248 (478)
240 PLN00043 elongation factor 1-a 99.7 2E-16 4.4E-21 125.0 13.0 158 3-167 4-202 (447)
241 COG1163 DRG Predicted GTPase [ 99.7 1.8E-15 3.9E-20 111.4 16.7 153 6-178 63-289 (365)
242 PRK05124 cysN sulfate adenylyl 99.7 1.9E-16 4.2E-21 126.1 12.7 158 3-169 24-216 (474)
243 COG0536 Obg Predicted GTPase [ 99.7 2.9E-16 6.4E-21 116.3 12.5 162 8-181 161-336 (369)
244 cd01899 Ygr210 Ygr210 subfamil 99.7 8.5E-16 1.8E-20 116.2 15.2 80 9-88 1-110 (318)
245 TIGR02034 CysN sulfate adenyly 99.7 1E-16 2.2E-21 125.8 10.4 151 7-168 1-187 (406)
246 cd01850 CDC_Septin CDC/Septin. 99.7 8.3E-16 1.8E-20 114.6 14.7 144 5-161 3-185 (276)
247 COG3596 Predicted GTPase [Gene 99.7 8.7E-17 1.9E-21 116.0 8.9 174 3-180 36-224 (296)
248 COG0218 Predicted GTPase [Gene 99.7 6.4E-16 1.4E-20 107.1 12.7 159 3-179 21-198 (200)
249 PF09439 SRPRB: Signal recogni 99.7 2.9E-17 6.3E-22 113.7 6.0 117 6-125 3-127 (181)
250 COG2262 HflX GTPases [General 99.7 7.6E-16 1.6E-20 116.8 14.0 158 4-180 190-358 (411)
251 PTZ00141 elongation factor 1- 99.7 3.4E-16 7.4E-21 123.8 11.7 159 3-168 4-203 (446)
252 TIGR00503 prfC peptide chain r 99.7 1.3E-15 2.9E-20 122.4 15.0 117 4-124 9-146 (527)
253 cd04170 EF-G_bact Elongation f 99.7 7.6E-16 1.7E-20 114.9 12.8 147 8-173 1-168 (268)
254 COG0481 LepA Membrane GTPase L 99.7 1.7E-15 3.6E-20 116.5 14.1 164 3-182 6-190 (603)
255 KOG0077 Vesicle coat complex C 99.7 1.4E-16 3.1E-21 106.0 7.3 156 5-176 19-191 (193)
256 PRK05506 bifunctional sulfate 99.7 9.8E-16 2.1E-20 126.5 12.0 154 4-168 22-211 (632)
257 PTZ00327 eukaryotic translatio 99.7 1.3E-15 2.9E-20 120.3 12.1 167 3-180 31-235 (460)
258 PF01926 MMR_HSR1: 50S ribosom 99.7 2E-15 4.4E-20 98.6 10.4 105 8-119 1-116 (116)
259 PRK09866 hypothetical protein; 99.6 5.2E-15 1.1E-19 118.6 14.3 111 54-176 230-351 (741)
260 PRK12739 elongation factor G; 99.6 5.8E-15 1.3E-19 122.9 15.1 116 4-125 6-140 (691)
261 TIGR00484 EF-G translation elo 99.6 4.5E-15 9.8E-20 123.6 14.1 115 5-125 9-142 (689)
262 KOG1490 GTP-binding protein CR 99.6 1E-15 2.2E-20 118.2 7.8 172 5-189 167-352 (620)
263 KOG1145 Mitochondrial translat 99.6 6.2E-15 1.3E-19 115.1 10.9 154 5-177 152-315 (683)
264 PRK00007 elongation factor G; 99.6 2.7E-14 5.7E-19 119.0 15.3 115 4-124 8-141 (693)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.3E-13 2.8E-18 98.3 16.6 163 7-179 1-185 (196)
266 KOG1191 Mitochondrial GTPase [ 99.6 6.1E-15 1.3E-19 113.9 10.2 166 5-180 267-452 (531)
267 PRK14845 translation initiatio 99.6 1.7E-14 3.6E-19 122.7 12.7 158 17-178 472-673 (1049)
268 cd00066 G-alpha G protein alph 99.6 2.6E-14 5.6E-19 108.7 12.5 128 53-181 160-314 (317)
269 PRK12740 elongation factor G; 99.6 3.2E-14 7E-19 118.5 13.7 108 12-125 1-127 (668)
270 PRK09602 translation-associate 99.6 8.4E-14 1.8E-18 108.4 14.8 82 7-88 2-113 (396)
271 COG5256 TEF1 Translation elong 99.6 2.5E-14 5.3E-19 108.7 10.8 158 2-168 3-201 (428)
272 KOG3905 Dynein light intermedi 99.6 5.2E-14 1.1E-18 103.8 11.9 172 7-179 53-291 (473)
273 COG4917 EutP Ethanolamine util 99.6 6E-15 1.3E-19 93.8 5.9 137 8-175 3-143 (148)
274 KOG1532 GTPase XAB1, interacts 99.5 7.9E-14 1.7E-18 100.6 10.8 124 53-178 115-264 (366)
275 KOG0090 Signal recognition par 99.5 3.1E-14 6.6E-19 99.0 8.3 167 5-176 37-237 (238)
276 KOG1707 Predicted Ras related/ 99.5 4.2E-13 9E-18 105.7 15.0 164 3-181 422-586 (625)
277 smart00275 G_alpha G protein a 99.5 1.5E-13 3.2E-18 105.4 10.9 126 54-181 184-337 (342)
278 PRK13768 GTPase; Provisional 99.5 1E-13 2.2E-18 102.3 9.2 124 55-178 98-247 (253)
279 TIGR00490 aEF-2 translation el 99.5 9.5E-14 2.1E-18 116.1 8.7 116 5-124 18-152 (720)
280 TIGR00101 ureG urease accessor 99.5 1.4E-12 3E-17 92.9 12.9 104 54-178 92-196 (199)
281 COG2895 CysN GTPases - Sulfate 99.5 6.4E-13 1.4E-17 99.1 11.2 157 2-167 2-192 (431)
282 TIGR00157 ribosome small subun 99.5 3.7E-13 8.1E-18 98.8 10.0 96 65-175 24-120 (245)
283 PF03029 ATP_bind_1: Conserved 99.5 1.7E-14 3.7E-19 105.2 2.7 123 55-177 92-236 (238)
284 KOG1144 Translation initiation 99.5 3.9E-13 8.4E-18 108.4 9.5 176 5-184 474-693 (1064)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.8E-12 3.8E-17 96.8 12.1 118 5-125 37-168 (313)
286 COG1217 TypA Predicted membran 99.5 2.2E-12 4.7E-17 99.4 12.6 162 6-181 5-198 (603)
287 cd01853 Toc34_like Toc34-like 99.4 2.1E-12 4.5E-17 94.9 12.0 120 4-126 29-165 (249)
288 PF05783 DLIC: Dynein light in 99.4 6E-12 1.3E-16 99.6 13.9 172 6-181 25-267 (472)
289 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.6E-12 7.8E-17 92.6 11.6 142 4-163 37-181 (225)
290 PTZ00258 GTP-binding protein; 99.4 1.4E-11 3E-16 95.4 14.7 84 5-88 20-126 (390)
291 PRK09435 membrane ATPase/prote 99.4 3E-12 6.5E-17 97.2 10.3 107 53-178 148-260 (332)
292 TIGR02836 spore_IV_A stage IV 99.4 9.4E-12 2E-16 95.5 12.7 156 6-176 17-235 (492)
293 KOG0461 Selenocysteine-specifi 99.4 1.2E-11 2.6E-16 92.2 12.4 169 4-183 5-198 (522)
294 TIGR00073 hypB hydrogenase acc 99.4 2.1E-11 4.7E-16 87.6 13.3 152 4-176 20-205 (207)
295 PLN00116 translation elongatio 99.4 1.5E-12 3.2E-17 110.5 7.9 116 4-123 17-163 (843)
296 PF00735 Septin: Septin; Inte 99.4 1.8E-11 4E-16 91.4 12.8 116 5-125 3-157 (281)
297 PF05049 IIGP: Interferon-indu 99.4 3.2E-12 7E-17 97.8 8.6 171 5-183 34-223 (376)
298 PRK07560 elongation factor EF- 99.4 1.3E-11 2.8E-16 103.7 12.9 116 5-124 19-153 (731)
299 KOG0082 G-protein alpha subuni 99.4 2.3E-11 5E-16 92.0 12.4 135 46-183 189-349 (354)
300 PTZ00416 elongation factor 2; 99.3 2.3E-12 4.9E-17 109.3 7.7 115 5-123 18-157 (836)
301 PF04548 AIG1: AIG1 family; I 99.3 4.1E-11 9E-16 86.3 12.9 162 7-181 1-189 (212)
302 smart00010 small_GTPase Small 99.3 3.3E-11 7.2E-16 79.3 11.0 113 7-167 1-115 (124)
303 KOG1486 GTP-binding protein DR 99.3 2.3E-10 4.9E-15 82.0 15.0 154 5-178 61-288 (364)
304 KOG3886 GTP-binding protein [S 99.3 4E-12 8.6E-17 89.7 5.6 119 5-125 3-131 (295)
305 PRK09601 GTP-binding protein Y 99.3 3E-10 6.5E-15 87.1 15.1 82 7-88 3-107 (364)
306 PF00350 Dynamin_N: Dynamin fa 99.3 2E-11 4.3E-16 84.9 7.8 63 55-120 102-168 (168)
307 KOG0705 GTPase-activating prot 99.3 9.3E-12 2E-16 97.6 6.7 161 5-180 29-191 (749)
308 COG4108 PrfC Peptide chain rel 99.3 4.6E-11 1E-15 91.6 9.5 116 5-124 11-147 (528)
309 TIGR00750 lao LAO/AO transport 99.2 1E-10 2.2E-15 88.6 9.8 105 53-178 126-238 (300)
310 COG0378 HypB Ni2+-binding GTPa 99.2 2.6E-10 5.7E-15 78.9 10.9 102 54-177 97-200 (202)
311 KOG0458 Elongation factor 1 al 99.2 1.4E-10 3.1E-15 91.7 9.8 158 5-169 176-373 (603)
312 COG0480 FusA Translation elong 99.2 1.9E-10 4E-15 95.0 10.5 118 3-125 7-143 (697)
313 COG3276 SelB Selenocysteine-sp 99.1 2.5E-10 5.3E-15 87.9 8.8 154 8-178 2-162 (447)
314 COG0050 TufB GTPases - transla 99.1 5.8E-10 1.3E-14 81.7 9.8 165 4-181 10-204 (394)
315 smart00053 DYNc Dynamin, GTPas 99.1 5.7E-10 1.2E-14 81.3 9.7 69 54-125 125-207 (240)
316 PRK10463 hydrogenase nickel in 99.1 6.6E-10 1.4E-14 82.6 10.2 152 4-176 102-287 (290)
317 COG5257 GCD11 Translation init 99.1 7.8E-10 1.7E-14 82.0 9.9 166 5-181 9-205 (415)
318 PF00503 G-alpha: G-protein al 99.1 1.5E-09 3.3E-14 85.2 12.2 124 54-177 236-389 (389)
319 COG5019 CDC3 Septin family pro 99.1 3E-09 6.4E-14 80.3 12.5 117 5-125 22-177 (373)
320 PRK00098 GTPase RsgA; Reviewed 99.1 6.5E-10 1.4E-14 84.1 9.2 86 75-174 78-163 (298)
321 KOG1547 Septin CDC10 and relat 99.1 1E-09 2.2E-14 78.2 9.2 117 3-123 43-197 (336)
322 KOG2655 Septin family protein 99.1 2.4E-09 5.2E-14 81.3 11.6 116 5-125 20-173 (366)
323 KOG0468 U5 snRNP-specific prot 99.1 3.2E-10 7E-15 91.0 7.2 116 4-123 126-262 (971)
324 cd01855 YqeH YqeH. YqeH is an 99.1 4.6E-10 1E-14 79.6 7.3 95 67-178 24-125 (190)
325 KOG3887 Predicted small GTPase 99.1 5.1E-10 1.1E-14 79.8 7.2 169 6-180 27-204 (347)
326 COG0012 Predicted GTPase, prob 99.1 9.5E-09 2.1E-13 78.1 14.5 84 6-89 2-109 (372)
327 cd01859 MJ1464 MJ1464. This f 99.1 3.4E-10 7.4E-15 77.7 6.2 94 68-178 3-96 (156)
328 TIGR00993 3a0901s04IAP86 chlor 99.1 7.5E-09 1.6E-13 84.2 13.8 118 5-125 117-251 (763)
329 PF03308 ArgK: ArgK protein; 99.0 8E-10 1.7E-14 80.1 6.9 101 53-177 121-229 (266)
330 PRK12289 GTPase RsgA; Reviewed 99.0 2.6E-09 5.7E-14 82.1 9.6 92 69-176 81-173 (352)
331 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.1E-09 6.7E-14 80.0 9.2 86 74-175 75-161 (287)
332 KOG1143 Predicted translation 99.0 4.7E-09 1E-13 79.5 9.5 160 6-169 167-379 (591)
333 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3E-14 80.8 6.3 80 9-88 1-103 (274)
334 COG5258 GTPBP1 GTPase [General 99.0 1.2E-09 2.5E-14 82.9 5.4 171 4-180 115-340 (527)
335 COG1703 ArgK Putative periplas 99.0 8.8E-09 1.9E-13 75.9 9.8 106 53-177 143-253 (323)
336 KOG0410 Predicted GTP binding 98.9 3.4E-09 7.4E-14 78.7 6.9 149 6-179 178-342 (410)
337 TIGR03597 GTPase_YqeH ribosome 98.9 5.6E-09 1.2E-13 81.0 7.2 96 64-176 50-151 (360)
338 PRK12288 GTPase RsgA; Reviewed 98.9 2E-08 4.3E-13 77.3 10.0 88 76-176 119-206 (347)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 8.2E-09 1.8E-13 69.7 6.4 54 8-64 85-138 (141)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.1E-08 4.6E-13 68.9 7.6 90 74-177 5-94 (157)
341 KOG2486 Predicted GTPase [Gene 98.8 1.2E-08 2.5E-13 74.4 5.6 164 4-176 134-314 (320)
342 KOG0463 GTP-binding protein GP 98.8 6.4E-08 1.4E-12 73.6 9.6 117 6-126 133-289 (641)
343 KOG1954 Endocytosis/signaling 98.8 2E-08 4.3E-13 76.0 6.7 117 7-126 59-227 (532)
344 PF09547 Spore_IV_A: Stage IV 98.7 9.1E-07 2E-11 68.6 14.4 155 6-175 17-234 (492)
345 cd01858 NGP_1 NGP-1. Autoanti 98.7 4.7E-08 1E-12 67.2 6.8 55 5-64 101-157 (157)
346 cd04178 Nucleostemin_like Nucl 98.7 5.1E-08 1.1E-12 67.9 6.7 54 6-64 117-172 (172)
347 cd01849 YlqF_related_GTPase Yl 98.7 1.6E-07 3.4E-12 64.4 8.8 83 79-177 1-84 (155)
348 cd01856 YlqF YlqF. Proteins o 98.6 1E-07 2.2E-12 66.4 6.7 55 5-64 114-170 (171)
349 KOG0467 Translation elongation 98.6 8.6E-08 1.9E-12 78.4 7.0 116 2-121 5-135 (887)
350 KOG0460 Mitochondrial translat 98.6 3.4E-07 7.3E-12 68.7 9.4 166 3-180 51-247 (449)
351 cd01856 YlqF YlqF. Proteins o 98.6 1.5E-07 3.3E-12 65.6 7.0 88 72-178 14-101 (171)
352 TIGR00092 GTP-binding protein 98.6 1.9E-07 4.1E-12 71.9 8.0 82 7-88 3-108 (368)
353 TIGR03596 GTPase_YlqF ribosome 98.6 1.6E-07 3.5E-12 70.4 7.4 55 5-64 117-173 (276)
354 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.4E-07 3.1E-12 63.6 6.3 78 73-165 7-84 (141)
355 KOG1487 GTP-binding protein DR 98.6 5E-07 1.1E-11 65.5 9.2 84 7-92 60-151 (358)
356 cd01859 MJ1464 MJ1464. This f 98.6 2.3E-07 5.1E-12 63.6 6.9 57 5-64 100-156 (156)
357 PF03193 DUF258: Protein of un 98.6 6.9E-08 1.5E-12 65.9 3.9 59 7-68 36-101 (161)
358 PRK09563 rbgA GTPase YlqF; Rev 98.6 3E-07 6.5E-12 69.4 7.7 56 5-65 120-177 (287)
359 KOG0465 Mitochondrial elongati 98.6 1.7E-07 3.7E-12 75.0 6.4 117 5-125 38-171 (721)
360 TIGR03596 GTPase_YlqF ribosome 98.5 4.9E-07 1.1E-11 67.9 7.7 90 72-180 16-105 (276)
361 KOG1491 Predicted GTP-binding 98.5 5.2E-07 1.1E-11 67.7 7.2 85 5-89 19-126 (391)
362 cd01849 YlqF_related_GTPase Yl 98.5 5.3E-07 1.1E-11 61.8 6.8 55 5-64 99-155 (155)
363 cd01855 YqeH YqeH. YqeH is an 98.5 3E-07 6.5E-12 65.2 5.6 25 6-30 127-151 (190)
364 COG1161 Predicted GTPases [Gen 98.5 4.7E-07 1E-11 69.3 6.5 55 5-64 131-187 (322)
365 PRK13796 GTPase YqeH; Provisio 98.5 7.4E-07 1.6E-11 69.4 7.6 82 78-176 70-157 (365)
366 PRK12288 GTPase RsgA; Reviewed 98.5 3E-07 6.5E-12 70.9 5.3 22 9-30 208-229 (347)
367 KOG0085 G protein subunit Galp 98.4 2.2E-07 4.8E-12 66.2 3.8 129 53-182 198-353 (359)
368 COG5192 BMS1 GTP-binding prote 98.4 2.4E-06 5.3E-11 68.4 9.6 112 4-126 67-179 (1077)
369 KOG0448 Mitofusin 1 GTPase, in 98.4 4.6E-06 1E-10 67.9 11.2 119 4-126 107-277 (749)
370 PRK10416 signal recognition pa 98.4 3.8E-06 8.3E-11 64.1 10.3 94 53-170 196-302 (318)
371 cd01851 GBP Guanylate-binding 98.4 2.2E-06 4.8E-11 62.3 8.5 88 4-91 5-105 (224)
372 KOG0099 G protein subunit Galp 98.4 1.2E-06 2.6E-11 63.6 6.7 72 54-125 202-284 (379)
373 PRK01889 GTPase RsgA; Reviewed 98.4 2.1E-06 4.6E-11 66.6 8.5 83 75-174 110-193 (356)
374 KOG0447 Dynamin-like GTP bindi 98.4 9.9E-06 2.2E-10 64.7 11.9 84 54-149 412-508 (980)
375 PRK14974 cell division protein 98.4 1.8E-06 3.9E-11 66.2 7.5 94 54-170 223-322 (336)
376 COG1618 Predicted nucleotide k 98.4 2.7E-05 5.9E-10 52.7 12.1 57 4-62 3-59 (179)
377 KOG0466 Translation initiation 98.4 3.6E-07 7.8E-12 67.7 3.4 116 55-181 126-244 (466)
378 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.8E-06 4E-11 65.1 7.3 89 72-179 19-107 (287)
379 cd03112 CobW_like The function 98.4 2.9E-06 6.4E-11 58.3 7.7 64 54-122 87-158 (158)
380 TIGR03348 VI_IcmF type VI secr 98.3 2.1E-06 4.5E-11 76.1 8.2 113 9-125 114-258 (1169)
381 TIGR00064 ftsY signal recognit 98.3 4.2E-06 9.2E-11 62.6 8.1 94 53-170 154-260 (272)
382 PRK12289 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 66.7 6.0 22 9-30 175-196 (352)
383 TIGR00157 ribosome small subun 98.3 1.4E-06 3.1E-11 64.1 4.8 23 8-30 122-144 (245)
384 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.5E-06 3.3E-11 65.6 4.8 24 7-30 162-185 (287)
385 KOG3859 Septins (P-loop GTPase 98.2 8E-06 1.7E-10 60.0 8.1 117 4-124 40-190 (406)
386 TIGR01425 SRP54_euk signal rec 98.2 1.8E-05 3.9E-10 62.5 10.6 113 6-124 100-253 (429)
387 COG1162 Predicted GTPases [Gen 98.2 1.4E-06 3.1E-11 64.9 3.8 57 8-68 166-230 (301)
388 COG1162 Predicted GTPases [Gen 98.2 2.1E-05 4.6E-10 58.8 9.8 96 68-176 70-165 (301)
389 KOG4273 Uncharacterized conser 98.2 7.2E-05 1.6E-09 54.3 12.0 170 6-181 4-225 (418)
390 PF06858 NOG1: Nucleolar GTP-b 98.1 1E-05 2.2E-10 44.8 5.4 43 78-121 14-58 (58)
391 KOG0464 Elongation factor G [T 98.1 9.3E-07 2E-11 68.2 1.7 116 6-125 37-169 (753)
392 TIGR03597 GTPase_YqeH ribosome 98.1 5E-06 1.1E-10 64.7 5.5 54 7-65 155-215 (360)
393 PRK00098 GTPase RsgA; Reviewed 98.1 4.4E-06 9.4E-11 63.4 5.1 23 8-30 166-188 (298)
394 PRK13796 GTPase YqeH; Provisio 98.1 4.9E-06 1.1E-10 64.9 5.1 54 7-65 161-221 (365)
395 PRK14722 flhF flagellar biosyn 98.0 8.7E-05 1.9E-09 57.8 10.1 92 53-159 215-315 (374)
396 PF11111 CENP-M: Centromere pr 98.0 0.0011 2.3E-08 45.6 14.1 144 1-178 10-153 (176)
397 KOG1533 Predicted GTPase [Gene 98.0 1.1E-05 2.3E-10 57.9 4.6 120 53-175 96-250 (290)
398 PRK00771 signal recognition pa 98.0 9E-05 1.9E-09 59.0 10.0 83 54-158 176-265 (437)
399 PRK10867 signal recognition pa 98.0 0.00011 2.3E-09 58.4 10.3 85 53-159 183-274 (433)
400 cd03114 ArgK-like The function 97.9 5.6E-05 1.2E-09 51.4 7.2 58 53-121 91-148 (148)
401 COG3523 IcmF Type VI protein s 97.9 2.7E-05 5.8E-10 68.1 6.6 114 9-125 128-271 (1188)
402 KOG1424 Predicted GTP-binding 97.8 2.4E-05 5.1E-10 62.0 4.5 56 6-65 314-370 (562)
403 KOG0469 Elongation factor 2 [T 97.8 3.4E-05 7.4E-10 61.2 5.3 117 3-123 16-163 (842)
404 PF02492 cobW: CobW/HypB/UreG, 97.8 0.00014 3E-09 51.1 7.7 67 54-125 85-156 (178)
405 PRK12727 flagellar biosynthesi 97.8 9.7E-05 2.1E-09 59.7 7.6 85 53-160 428-519 (559)
406 PRK14721 flhF flagellar biosyn 97.8 0.0002 4.3E-09 56.6 9.1 84 54-159 270-360 (420)
407 PRK13695 putative NTPase; Prov 97.8 0.0015 3.3E-08 45.5 12.7 22 7-28 1-22 (174)
408 cd03115 SRP The signal recogni 97.8 0.0003 6.5E-09 49.0 9.0 67 53-125 82-154 (173)
409 TIGR00959 ffh signal recogniti 97.8 0.00046 1E-08 54.9 10.8 87 53-160 182-274 (428)
410 PRK11889 flhF flagellar biosyn 97.7 0.00013 2.8E-09 56.9 6.9 85 54-159 321-411 (436)
411 KOG2484 GTPase [General functi 97.7 5.8E-05 1.2E-09 58.1 3.9 58 4-65 250-308 (435)
412 COG1419 FlhF Flagellar GTP-bin 97.6 0.00049 1.1E-08 53.6 8.9 84 53-158 281-371 (407)
413 PF13207 AAA_17: AAA domain; P 97.6 5.4E-05 1.2E-09 49.4 3.0 22 8-29 1-22 (121)
414 KOG2485 Conserved ATP/GTP bind 97.6 0.00014 3E-09 54.4 5.3 59 4-64 141-206 (335)
415 KOG0459 Polypeptide release fa 97.6 0.00019 4.1E-09 55.5 6.2 162 4-171 77-279 (501)
416 cd02038 FleN-like FleN is a me 97.6 0.00028 6.1E-09 47.4 6.4 107 10-123 4-110 (139)
417 PRK11537 putative GTP-binding 97.6 0.0021 4.4E-08 49.4 11.8 22 8-29 6-27 (318)
418 PRK08118 topology modulation p 97.6 6.5E-05 1.4E-09 52.1 3.3 22 8-29 3-24 (167)
419 PRK12726 flagellar biosynthesi 97.6 0.00063 1.4E-08 53.0 8.6 85 54-160 286-377 (407)
420 PF13555 AAA_29: P-loop contai 97.5 9.9E-05 2.2E-09 42.0 3.0 21 8-28 25-45 (62)
421 TIGR00235 udk uridine kinase. 97.5 0.00011 2.4E-09 52.8 4.1 28 1-28 1-28 (207)
422 COG0563 Adk Adenylate kinase a 97.5 8.4E-05 1.8E-09 52.1 3.2 22 8-29 2-23 (178)
423 PRK07261 topology modulation p 97.5 7.9E-05 1.7E-09 51.9 3.1 21 8-28 2-22 (171)
424 PRK14723 flhF flagellar biosyn 97.5 0.00069 1.5E-08 57.3 8.9 88 53-159 263-357 (767)
425 PRK06995 flhF flagellar biosyn 97.5 0.00081 1.8E-08 54.2 8.9 101 54-179 335-448 (484)
426 COG0523 Putative GTPases (G3E 97.5 0.0054 1.2E-07 47.1 12.7 77 77-171 116-194 (323)
427 cd00009 AAA The AAA+ (ATPases 97.5 0.00057 1.2E-08 45.6 6.9 25 6-30 19-43 (151)
428 PF13671 AAA_33: AAA domain; P 97.5 8.3E-05 1.8E-09 50.0 2.6 20 9-28 2-21 (143)
429 COG1126 GlnQ ABC-type polar am 97.5 0.0001 2.2E-09 52.5 2.9 39 142-180 143-186 (240)
430 PRK05480 uridine/cytidine kina 97.4 0.00018 3.9E-09 51.8 4.0 28 2-29 2-29 (209)
431 PRK06731 flhF flagellar biosyn 97.4 0.00065 1.4E-08 50.7 6.9 85 53-159 154-245 (270)
432 PF03266 NTPase_1: NTPase; In 97.4 0.00031 6.7E-09 48.8 4.9 52 8-61 1-52 (168)
433 PRK10751 molybdopterin-guanine 97.4 0.0002 4.3E-09 49.8 3.8 29 1-29 1-29 (173)
434 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0013 2.9E-08 40.6 7.4 69 9-90 2-71 (99)
435 cd02019 NK Nucleoside/nucleoti 97.4 0.00019 4.1E-09 42.0 3.1 21 9-29 2-22 (69)
436 cd04178 Nucleostemin_like Nucl 97.4 0.00044 9.6E-09 48.2 5.4 44 79-124 1-44 (172)
437 PF13521 AAA_28: AAA domain; P 97.4 0.00012 2.6E-09 50.5 2.4 22 8-29 1-22 (163)
438 PRK05703 flhF flagellar biosyn 97.4 0.0027 5.9E-08 50.7 10.0 86 53-160 299-392 (424)
439 TIGR02475 CobW cobalamin biosy 97.3 0.0053 1.1E-07 47.6 11.3 21 9-29 7-27 (341)
440 PRK14737 gmk guanylate kinase; 97.3 0.00024 5.2E-09 50.2 3.6 24 6-29 4-27 (186)
441 COG1136 SalX ABC-type antimicr 97.3 0.00018 3.9E-09 52.0 2.9 21 8-28 33-53 (226)
442 COG3640 CooC CO dehydrogenase 97.3 0.0032 6.8E-08 45.6 9.0 92 6-123 98-198 (255)
443 PRK12723 flagellar biosynthesi 97.3 0.0019 4.1E-08 50.8 8.7 91 53-166 254-351 (388)
444 PF04665 Pox_A32: Poxvirus A32 97.3 0.00024 5.2E-09 51.9 3.3 25 5-29 12-36 (241)
445 PF00005 ABC_tran: ABC transpo 97.3 0.00025 5.5E-09 47.3 2.9 22 8-29 13-34 (137)
446 PRK14530 adenylate kinase; Pro 97.3 0.00032 6.9E-09 50.7 3.5 21 8-28 5-25 (215)
447 PRK06217 hypothetical protein; 97.3 0.00028 6E-09 49.7 3.1 23 7-29 2-24 (183)
448 PF00004 AAA: ATPase family as 97.2 0.00031 6.6E-09 46.4 3.2 21 9-29 1-21 (132)
449 PRK14527 adenylate kinase; Pro 97.2 0.00036 7.8E-09 49.5 3.6 28 1-28 1-28 (191)
450 PRK14738 gmk guanylate kinase; 97.2 0.0005 1.1E-08 49.4 4.2 25 5-29 12-36 (206)
451 KOG2423 Nucleolar GTPase [Gene 97.2 0.00017 3.6E-09 55.8 1.8 59 2-63 303-361 (572)
452 PTZ00088 adenylate kinase 1; P 97.2 0.0004 8.7E-09 50.7 3.6 26 3-28 3-28 (229)
453 PRK01889 GTPase RsgA; Reviewed 97.2 0.0004 8.8E-09 54.1 3.8 24 7-30 196-219 (356)
454 smart00382 AAA ATPases associa 97.2 0.0004 8.7E-09 45.9 3.3 25 7-31 3-27 (148)
455 cd00071 GMPK Guanosine monopho 97.2 0.00037 8.1E-09 46.7 3.1 21 9-29 2-22 (137)
456 COG1116 TauB ABC-type nitrate/ 97.2 0.00034 7.4E-09 50.9 3.0 20 9-28 32-51 (248)
457 PF13238 AAA_18: AAA domain; P 97.2 0.00032 6.8E-09 46.1 2.6 21 9-29 1-21 (129)
458 COG1117 PstB ABC-type phosphat 97.2 0.001 2.2E-08 47.5 5.0 41 8-53 35-75 (253)
459 PRK10078 ribose 1,5-bisphospho 97.1 0.00041 8.9E-09 49.0 3.2 22 8-29 4-25 (186)
460 COG0194 Gmk Guanylate kinase [ 97.1 0.00034 7.4E-09 48.7 2.6 25 6-30 4-28 (191)
461 COG0552 FtsY Signal recognitio 97.1 0.001 2.2E-08 50.5 5.3 94 52-169 220-326 (340)
462 PRK03839 putative kinase; Prov 97.1 0.00044 9.5E-09 48.5 3.1 22 8-29 2-23 (180)
463 PF03205 MobB: Molybdopterin g 97.1 0.00045 9.7E-09 46.5 3.0 22 8-29 2-23 (140)
464 TIGR02322 phosphon_PhnN phosph 97.1 0.00044 9.6E-09 48.4 3.1 22 8-29 3-24 (179)
465 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00046 1E-08 43.9 2.8 21 7-27 16-36 (107)
466 cd03110 Fer4_NifH_child This p 97.1 0.0031 6.6E-08 44.2 7.3 85 52-156 91-175 (179)
467 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00045 9.7E-09 48.7 2.9 22 7-28 4-25 (188)
468 cd02023 UMPK Uridine monophosp 97.1 0.00049 1.1E-08 49.1 3.1 21 9-29 2-22 (198)
469 cd02042 ParA ParA and ParB of 97.1 0.0026 5.7E-08 40.2 6.1 82 9-102 2-84 (104)
470 COG1120 FepC ABC-type cobalami 97.1 0.00047 1E-08 50.8 3.0 20 9-28 31-50 (258)
471 COG0541 Ffh Signal recognition 97.0 0.0025 5.5E-08 50.1 6.7 113 4-123 98-252 (451)
472 cd03238 ABC_UvrA The excision 97.0 0.00061 1.3E-08 47.7 3.2 21 7-27 22-42 (176)
473 PRK14532 adenylate kinase; Pro 97.0 0.00057 1.2E-08 48.3 3.0 21 8-28 2-22 (188)
474 PRK08233 hypothetical protein; 97.0 0.00073 1.6E-08 47.3 3.6 24 6-29 3-26 (182)
475 TIGR03263 guanyl_kin guanylate 97.0 0.00057 1.2E-08 47.9 3.0 22 8-29 3-24 (180)
476 KOG0780 Signal recognition par 97.0 0.00037 8E-09 53.8 2.1 52 52-103 182-239 (483)
477 PRK13949 shikimate kinase; Pro 97.0 0.00063 1.4E-08 47.3 3.1 21 8-28 3-23 (169)
478 PRK14531 adenylate kinase; Pro 97.0 0.00064 1.4E-08 47.9 3.2 22 7-28 3-24 (183)
479 PF07728 AAA_5: AAA domain (dy 97.0 0.00064 1.4E-08 45.5 2.9 21 8-28 1-21 (139)
480 PLN02200 adenylate kinase fami 97.0 0.00084 1.8E-08 49.2 3.7 24 5-28 42-65 (234)
481 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0021 4.6E-08 42.7 5.3 22 8-29 24-45 (133)
482 cd02025 PanK Pantothenate kina 97.0 0.00062 1.4E-08 49.4 2.9 20 9-28 2-21 (220)
483 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00069 1.5E-08 47.4 3.0 22 8-29 27-48 (177)
484 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00071 1.5E-08 47.5 3.0 20 9-28 2-21 (183)
485 cd01130 VirB11-like_ATPase Typ 97.0 0.0008 1.7E-08 47.5 3.3 24 6-29 25-48 (186)
486 cd01428 ADK Adenylate kinase ( 97.0 0.00066 1.4E-08 48.1 2.8 22 8-29 1-22 (194)
487 PLN02674 adenylate kinase 97.0 0.00085 1.8E-08 49.3 3.3 25 4-28 29-53 (244)
488 TIGR01351 adk adenylate kinase 96.9 0.00066 1.4E-08 48.9 2.7 21 8-28 1-21 (210)
489 KOG3347 Predicted nucleotide k 96.9 0.00062 1.3E-08 45.6 2.3 25 4-28 5-29 (176)
490 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00081 1.8E-08 48.7 3.2 22 8-29 32-53 (218)
491 cd01131 PilT Pilus retraction 96.9 0.00083 1.8E-08 48.0 3.1 21 9-29 4-24 (198)
492 TIGR00554 panK_bact pantothena 96.9 0.0011 2.3E-08 50.1 3.7 24 4-27 60-83 (290)
493 PRK02496 adk adenylate kinase; 96.9 0.00091 2E-08 47.1 3.3 22 7-28 2-23 (184)
494 PRK09270 nucleoside triphospha 96.9 0.0012 2.5E-08 48.3 3.8 26 4-29 31-56 (229)
495 PRK00625 shikimate kinase; Pro 96.9 0.00093 2E-08 46.6 3.1 21 8-28 2-22 (173)
496 TIGR01166 cbiO cobalt transpor 96.9 0.00096 2.1E-08 47.2 3.2 22 8-29 20-41 (190)
497 COG3839 MalK ABC-type sugar tr 96.9 0.00079 1.7E-08 51.6 2.9 20 9-28 32-51 (338)
498 PRK00300 gmk guanylate kinase; 96.9 0.00089 1.9E-08 48.0 3.0 23 7-29 6-28 (205)
499 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00096 2.1E-08 48.0 3.2 22 8-29 29-50 (211)
500 TIGR00960 3a0501s02 Type II (G 96.9 0.00096 2.1E-08 48.2 3.2 22 8-29 31-52 (216)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-41 Score=228.41 Aligned_cols=167 Identities=36% Similarity=0.696 Sum_probs=155.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+-|||+|+|.+|||||+|+.||..+.|.+.+..|++-.+ ...+.++++.+.+++|||+||++|+++..+++++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 3579999999999999999999999999999999996555 567889999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||+++.+||..+ ..|+..+..+. +++|.++||||+|+.+... ++.++++.|+..++.+.++|+||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 99999999998 6889999999999988776 999999999999999449999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
++.++++.|..|...+.++.
T Consensus 156 ~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CccCHHHHHHHHHHHHHHhc
Confidence 99999999999999886543
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-40 Score=223.43 Aligned_cols=169 Identities=33% Similarity=0.615 Sum_probs=155.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
....+|++++|..+||||||+.|+..+.|.+...+|++ ..+...+.+++..+.|.||||+|+++|.++.+.++++|+++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 34679999999999999999999999999888888885 44567788888899999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
|+|||+++.+||..+ +.|+..+.... +++-+.+||||+|+.+.+. +..++++.++...+. .|+|+||
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA 149 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA 149 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence 999999999999999 99999998887 5778889999999988665 999999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchh
Q 029215 161 KTQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
++|.|++++|..|.+.+.....+
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ccccCHHHHHHHHHHhccCcccc
Confidence 99999999999999999876544
No 3
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1e-39 Score=231.75 Aligned_cols=188 Identities=56% Similarity=0.982 Sum_probs=156.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+||+++|.++||||||+.++..+.|.+.+.+|.+..+...+.+++..+.+++|||+|+++|..+++.+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 35899999999999999999999999988999999777766677888899999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||++++++|+.+...|...+....++.|+++||||+|+.+..... ........+..++++.+++.++..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999999557888777766789999999999996542110 011122346778999999999855899999999
Q ss_pred CCCHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215 163 QQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL 197 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
|.|++++|+++++.+..+...+ ++ .+|.+|
T Consensus 162 g~~v~e~f~~l~~~~~~~~~~~--~~---~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTPIK--DT---KSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhcccccc--CC---CCceeC
Confidence 9999999999999998764211 11 249886
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.2e-39 Score=224.51 Aligned_cols=174 Identities=90% Similarity=1.394 Sum_probs=152.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+|++++|.+++|||||+.++..+.|...+.+|.+..+...+.+++..+.+++|||+|+++|..+++.++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999889999977777777788899999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
+++++||+.+...|+..+....++.|+++||||+|+.+........+..+.+..++++++++..+..+++||||++|.||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 99999999975689998887777899999999999965432111223345578999999999999757999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 029215 167 KAVFDAAIKVVLQP 180 (197)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (197)
+++|+.+++.+.++
T Consensus 162 ~~~F~~~~~~~~~~ 175 (176)
T cd04133 162 KAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987654
No 5
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.2e-39 Score=232.42 Aligned_cols=176 Identities=36% Similarity=0.671 Sum_probs=152.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+||+++|.+|||||+|+.+|..+.|.+.+.+|....+...+.+++..+.++||||+|++.|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 57899999999999999999999999999999998777777788899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||++++++|+.....|+..+....++.|+++|+||+|+........ .....+.+..++++++++.+++.+|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 9999999999865889999988778899999999999864311000 01112458899999999999986799999999
Q ss_pred CC-CHHHHHHHHHHHHcCC
Q 029215 163 QQ-NVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~-~i~~~~~~i~~~~~~~ 180 (197)
|. |++++|..+++.+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 97 8999999999887653
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.6e-39 Score=225.73 Aligned_cols=181 Identities=29% Similarity=0.518 Sum_probs=154.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|..|||||||+.++..+.+..++.++....+ ...+..++..+.+++|||+|++.|..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3579999999999999999999999988877777764433 455677888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||++++++|+.+ ..|+..+....++.|+++||||+|+.+.+. +..++++.+++..++ +++++||++
T Consensus 84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence 99999999999999 889999988778999999999999976544 788999999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCchhh---hhhhcccccccc
Q 029215 163 QQNVKAVFDAAIKVVLQPPKQK---KKKKKSHRACSI 196 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~~~---~~~~~~~~~c~~ 196 (197)
|.||+++|+++++.+..+..+. +++.=++++|-|
T Consensus 152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T cd04121 152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCKI 188 (189)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCcccc
Confidence 9999999999999887544322 233334444543
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.7e-38 Score=222.15 Aligned_cols=176 Identities=36% Similarity=0.714 Sum_probs=152.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|||||||++++..+.+.+.+.+|....+...+.+++..+.+++|||+|++.|..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999999999999977777778889999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++++|+.+...|+..+....++.|+++||||+|+.+..... ......+.++.++++++++.+++.+|+||||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 9999999999997678999998887899999999999996421100 00112245889999999999996689999999
Q ss_pred CCCC-HHHHHHHHHHHHcC
Q 029215 162 TQQN-VKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~-i~~~~~~i~~~~~~ 179 (197)
+|.| |+++|+.+++.+..
T Consensus 163 ~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 163 QSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9998 99999999987543
No 8
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.4e-38 Score=224.23 Aligned_cols=185 Identities=50% Similarity=0.885 Sum_probs=158.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||+++|..+.+...+.++....+...+... +..+.+++|||||++++..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888876665556665 67789999999999999999888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
|++++++|+.+...|+..+....++.|+++|+||+|+..... ....+..+++.+++..++..+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 999999999986678887776667899999999999965321 12336778899999999876899999999999
Q ss_pred HHHHHHHHHHHHcCCchhh-hhhhccccccccC
Q 029215 166 VKAVFDAAIKVVLQPPKQK-KKKKKSHRACSIL 197 (197)
Q Consensus 166 i~~~~~~i~~~~~~~~~~~-~~~~~~~~~c~~~ 197 (197)
++++|..+++.+.....+. ..+++++++|++|
T Consensus 155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 9999999999998776554 5677788889987
No 9
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.9e-38 Score=222.09 Aligned_cols=186 Identities=42% Similarity=0.721 Sum_probs=155.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|++|||||||++++..+.+.+.+.+|....+...+..++..+.+++|||+|++.+..++..++.++|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999999988888888777766677788889999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
+++++|+.+...|+..+....++.|+++|+||+|+....... ........+..+++..+++..+..+++++||++|.|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 999999988557888888777899999999999997653211 011112235677888888888755899999999999
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215 166 VKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL 197 (197)
Q Consensus 166 i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
++++|+++++.+..... ....+.+|+||
T Consensus 162 v~e~f~~l~~~~~~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 162 VNEAFTEAARVALNVRP----PHPHSSACTIA 189 (189)
T ss_pred HHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence 99999999999875543 44455569987
No 10
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.9e-38 Score=219.37 Aligned_cols=173 Identities=35% Similarity=0.709 Sum_probs=149.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||+|++.|..+.+.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999989999987777777888899999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+++++||+.+...|+..+....++.|+++||||+|+.+..... ......+.++.++++++++.+++.+|++|||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999996588999998888899999999999996421000 0011224588899999999999768999999999
Q ss_pred CC-HHHHHHHHHHHHc
Q 029215 164 QN-VKAVFDAAIKVVL 178 (197)
Q Consensus 164 ~~-i~~~~~~i~~~~~ 178 (197)
.+ |+++|..+++.++
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999998655
No 11
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.3e-38 Score=226.59 Aligned_cols=174 Identities=36% Similarity=0.732 Sum_probs=151.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+|+|.+|||||||+.+|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999987777778889999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++|+.+...|...+....++.|+++||||+|+..+.... .......+++.+++..+++..++.+|+||||+++.
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 161 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 9999999999778988887777899999999999997542111 11122345788999999999997699999999988
Q ss_pred -CHHHHHHHHHHHHcCC
Q 029215 165 -NVKAVFDAAIKVVLQP 180 (197)
Q Consensus 165 -~i~~~~~~i~~~~~~~ 180 (197)
||+++|..++..+..+
T Consensus 162 ~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 162 RSVRDVFHVATVASLGR 178 (222)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 4999999999987654
No 12
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-38 Score=214.73 Aligned_cols=165 Identities=33% Similarity=0.565 Sum_probs=152.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.+|++++|..+|||||||.|++.+.|...|.+|++.. .+..+.+.+..++|++|||+|||+|+.+.+.|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999655 46778889999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++..||... ..|+..+.... + ++-+++||||.||.+.++ +..+++...+++++. .|+++||+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence 9999999999999 89988887776 3 578899999999998776 899999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
.|.||+.+|..|...+....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGME 188 (221)
T ss_pred CCCCHHHHHHHHHHhccCcc
Confidence 99999999999998887653
No 13
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.9e-38 Score=225.16 Aligned_cols=178 Identities=37% Similarity=0.633 Sum_probs=151.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||+++|..+.+...+.+|....+......++..+.+++|||||+++|..++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999999988888888766666677788888999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
++.++|+.+ ..|+..+.... ++.|+++|+||+|+.+... +...++..+++.++. +++++||++|
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~ 148 (190)
T cd04144 81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN 148 (190)
T ss_pred CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 999999998 77877765442 4789999999999976543 677778888888887 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCchhh--------hhhhccccccccC
Q 029215 164 QNVKAVFDAAIKVVLQPPKQK--------KKKKKSHRACSIL 197 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~~~~--------~~~~~~~~~c~~~ 197 (197)
.|++++|+++++.+..+++.. .++.|++++|++|
T Consensus 149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 999999999999876543222 3566667778876
No 14
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-38 Score=216.85 Aligned_cols=166 Identities=33% Similarity=0.649 Sum_probs=154.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.++||||+|+.++..+.|...+..|.+-.+ ...+..++..+.+++|||+||++|+.+...|++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 4679999999999999999999999999999999996554 567888999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||+++..||+.+ ..|+..+.++. +++|.++||||+|+...+. +..+.++++|..+|. +++|+||+
T Consensus 90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSAk 157 (207)
T KOG0078|consen 90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSAK 157 (207)
T ss_pred EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcccc
Confidence 99999999999999 66999999999 4999999999999988665 999999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+|.||++.|-.+++.+..+.
T Consensus 158 ~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999988544
No 15
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=220.87 Aligned_cols=182 Identities=35% Similarity=0.582 Sum_probs=155.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|+|||||++++..+.+...+.+|....+...+.+++..+.+++|||||+++|..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45699999999999999999999999988888888877777777788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++++|+.. ..|...+.... ++.|+++|+||+|+.+... +..+++..+++.++. +++++||+
T Consensus 83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak 150 (189)
T PTZ00369 83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK 150 (189)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence 9999999999998 77877776554 4899999999999865443 667778888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchh---hhhhhccccccccC
Q 029215 162 TQQNVKAVFDAAIKVVLQPPKQ---KKKKKKSHRACSIL 197 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~---~~~~~~~~~~c~~~ 197 (197)
+|.|++++|.++++.+.+..++ .++.+++++.|+||
T Consensus 151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 9999999999999887655322 23566666779886
No 16
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6e-37 Score=214.63 Aligned_cols=172 Identities=55% Similarity=0.986 Sum_probs=148.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||+.++..+.|.+.+.||....+...+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 47999999999999999999999999888999987777666778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++++|+.+...|+..+....++.|+++|+||+|+....... ......+.+..++++++++..+..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 99999999998557988887776789999999999986542211 1112235678899999999988558999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|++++|+.+++.+
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 17
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-38 Score=211.32 Aligned_cols=170 Identities=29% Similarity=0.578 Sum_probs=157.3
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|+....+|+.++|..|||||+|+.+++...|.+.+..|.+..+ ...+.++++++.+++|||+||+.|++...++++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6677889999999999999999999999999999999986555 467889999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
++|+|||++.+++|..+ ..|+..++++. ++.-++++|||+|+...+. ++.++++.||++.|. .++++
T Consensus 81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence 99999999999999999 99999999886 8999999999999987765 999999999999997 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCch
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
||+++.|++++|..+...+++..+
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876543
No 18
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-38 Score=205.16 Aligned_cols=165 Identities=32% Similarity=0.645 Sum_probs=152.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|+|||||+.+|..+.|.+..+.|++..+ ...+.+++..+.+.||||+||++|+.+.+++++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 469999999999999999999999999888777786555 4678889999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++.+++|..+ ..|++.+..+. +++-.++|+||+|...++. ++.+++..|++.+++ -++|+||+
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk 157 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK 157 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence 9999999999999 99999999988 5788899999999876655 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+.+|+..+|+.++..+.+.+
T Consensus 158 t~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 158 TRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhccHHHHHHHHHHHHhcCc
Confidence 99999999999999998765
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.2e-37 Score=218.15 Aligned_cols=162 Identities=31% Similarity=0.572 Sum_probs=143.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+.|+++|..|||||||++++..+.|...+.+|.+. .....+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888888754 44566788888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~ 163 (197)
|++++++|+.+ ..|+..+.... ++.|+++|+||+|+...+. +...+++++++.. +. .++++||++|
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence 99999999999 78988887765 5899999999999976544 7788889999886 55 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029215 164 QNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (197)
.||+++|+++++.+...
T Consensus 149 ~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 149 FNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 20
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=207.23 Aligned_cols=170 Identities=31% Similarity=0.560 Sum_probs=153.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..+||.++|.+|+|||||++++..+.|...+..|++ +.....+.++++.+.+++|||+||++|+++.-.+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 4569999999999999999999999999999999995 455788899999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
++||++++++|+.+ ..|...+..+. ...|.+|+|||+|+.... .+.++.+.++++++..|..||||
T Consensus 87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence 99999999999999 99988776665 268999999999997632 24589999999999999889999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCch
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+|||+..||++.|..+.+.++....
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999999887654
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1e-36 Score=212.91 Aligned_cols=164 Identities=25% Similarity=0.508 Sum_probs=146.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||||++.+..++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 58999999999999999999999999888888887777767788888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++.+|..+ ..|...+.... +++|+++|+||+|+..... ++.+++..+++..++ ++++|||++|
T Consensus 82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~ 149 (172)
T cd04141 82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR 149 (172)
T ss_pred ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence 99999999999 66877776543 5899999999999976543 788889999999987 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCc
Q 029215 164 QNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~ 181 (197)
.||+++|+++++.+.+..
T Consensus 150 ~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 150 HYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999877543
No 22
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=203.51 Aligned_cols=163 Identities=33% Similarity=0.630 Sum_probs=151.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
-++.+|+|.+|+|||+|+.++-.+.|...|..|++..+ ...+.++|..+.++|||++|+++|+.+...+++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999999999986554 56788899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
||+++.+||... ..|++.++..++.+|-++||||.|..+.+. +..++++.++..+++ .+||+||+++.
T Consensus 88 YDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~ 155 (198)
T KOG0079|consen 88 YDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENE 155 (198)
T ss_pred EECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhcc
Confidence 999999999999 999999999999999999999999987665 899999999999998 99999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029215 165 NVKAVFDAAIKVVLQP 180 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~~ 180 (197)
+++.+|.-|.+.+.+.
T Consensus 156 NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQA 171 (198)
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999988876544
No 23
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.5e-36 Score=210.61 Aligned_cols=171 Identities=65% Similarity=1.095 Sum_probs=147.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||+.++..+.+.+.+.+|....+...+..++..+.+++|||+|++.+..+++.++.++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999888888887776667778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++++|..+...|+..+....++.|+++|+||+|+.+..... ........+..++++.+++.++..+++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999998667888887766789999999999996432100 1111234578899999999998669999999999
Q ss_pred CCHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKV 176 (197)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (197)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-36 Score=215.45 Aligned_cols=164 Identities=29% Similarity=0.470 Sum_probs=142.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+++|||||++.+..+++.++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999998888888886443 4456666 7789999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
||++++++|+.+ ..|+..+.... .++|+++|+||+|+.+... +..+++.++++..+..+++++|
T Consensus 81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S 149 (201)
T cd04107 81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence 999999999998 78877765432 4789999999999975333 6788899999999855899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCc
Q 029215 160 SKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (197)
|++|.|++++|+++++.+.+..
T Consensus 150 ak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.8e-35 Score=205.70 Aligned_cols=162 Identities=30% Similarity=0.620 Sum_probs=142.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+++||+||++.+..++..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888877775544 34566788889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 149 (166)
T cd04122 82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG 149 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 88887776654 6899999999999976544 678889999998887 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029215 164 QNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (197)
.|++++|.++++.+.+
T Consensus 150 ~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 150 ENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 26
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2e-35 Score=211.02 Aligned_cols=164 Identities=30% Similarity=0.568 Sum_probs=144.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++|+++|++|||||||++++..+.+.+.+.+|.... ....+..++..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 56999999999999999999999998887777877533 34566677878899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|||++++++|..+ ..|+..+....+..|+++|+||+|+.+... +..+++..+++..+. +++++||++|
T Consensus 85 v~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~ 152 (199)
T cd04110 85 VYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKEN 152 (199)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 9999999999998 789888887778899999999999976543 667888889888886 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029215 164 QNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (197)
.|++++|+++.+.+.+.
T Consensus 153 ~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 153 INVEEMFNCITELVLRA 169 (199)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999988653
No 27
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.9e-35 Score=205.50 Aligned_cols=171 Identities=61% Similarity=1.062 Sum_probs=147.9
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
|+|+|++|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888887777777778888899999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
++++|+.+...|+..+....++.|+++|+||+|+....... ........++.+++.++++..+..+++++||++|.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998667999888877899999999999997532211 1122234477888999999998768999999999999
Q ss_pred HHHHHHHHHHHcC
Q 029215 167 KAVFDAAIKVVLQ 179 (197)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (197)
+++|+.+++.+.+
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998765
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2e-35 Score=213.40 Aligned_cols=161 Identities=28% Similarity=0.456 Sum_probs=140.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|||||||+++|..+.+...+.+|.+ +.+...+.+++ ..+.+++|||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888885 44455666654 578999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
||++++++|..+ ..|+..+.... .+.|+++|+||+|+.+.+. +..+++..+++.++. +++++||
T Consensus 81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA 148 (215)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence 999999999998 78988887664 2568999999999975443 678888999999987 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|+|++++|+++++.+..
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3e-35 Score=203.92 Aligned_cols=159 Identities=30% Similarity=0.599 Sum_probs=140.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988888888876666777788888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++++.. ..|...+.... ++.|+++|+||+|+.+... +..+++..+++.++. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (163)
T cd04136 82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI 149 (163)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence 9999999988 77777776543 5899999999999976443 566778888888885 99999999999
Q ss_pred CHHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKVV 177 (197)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (197)
|++++|+++++.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.9e-35 Score=204.25 Aligned_cols=161 Identities=30% Similarity=0.578 Sum_probs=141.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|||||||++++..+.+.+.+.+|+...+...+..++..+.+++|||||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999888888888887777777788888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+++..+++.. ..|...+.... ++.|+++|+||+|+.+... +..+++..+++.++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999998 67766665433 6899999999999976543 566777888888886 9999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029215 164 QNVKAVFDAAIKVVL 178 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (197)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998764
No 31
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-35 Score=207.92 Aligned_cols=178 Identities=29% Similarity=0.543 Sum_probs=149.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998776777775433 456677788899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..+++..+. +++++||++|.
T Consensus 81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~ 148 (188)
T cd04125 81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI 148 (188)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999999 77988887765 4789999999999976543 677888888888887 99999999999
Q ss_pred CHHHHHHHHHHHHcCCchhh-------hhhhcccccccc
Q 029215 165 NVKAVFDAAIKVVLQPPKQK-------KKKKKSHRACSI 196 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~~-------~~~~~~~~~c~~ 196 (197)
|++++|+++++.+.++.... +.+-++++.|+|
T Consensus 149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI 187 (188)
T ss_pred CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence 99999999999987543222 234555666876
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=8.2e-35 Score=202.59 Aligned_cols=163 Identities=30% Similarity=0.627 Sum_probs=143.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|++|+|||||++++..+.+.+.+.++....+ ...+..++..+.+++||+||++.+..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 569999999999999999999999999888888875443 3456678888999999999999999888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++++|..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++..++. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T cd01867 82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA 149 (167)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 77988887765 5899999999999976543 567788888888887 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.|++++|+++++.+..
T Consensus 150 ~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 150 NINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 33
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=203.04 Aligned_cols=165 Identities=34% Similarity=0.583 Sum_probs=152.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+-|||+++|.+++|||-|+.|+..+.|..+..+|++..+ ...+.++++.+..+||||+||++|+.....+++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 569999999999999999999999999999889986554 5678899999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++.+.+|+.+ ..|+..++.+. +++++++||||+||.+-+. +..++++.+++..+. .++++||.+
T Consensus 93 VYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl~ 160 (222)
T KOG0087|consen 93 VYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSALD 160 (222)
T ss_pred EEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEecccc
Confidence 9999999999988 99999999999 7999999999999987654 899999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCc
Q 029215 163 QQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (197)
+.++++.|..++..+.+.-
T Consensus 161 ~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 9999999999998876543
No 34
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=192.07 Aligned_cols=166 Identities=32% Similarity=0.641 Sum_probs=151.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.-+|++++|...+|||||+.++.+..|...+..|.+..+.. .+..+...+.+++|||+|+++++.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999988888888666654 34445677999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+||+++.+||..+ +.|...+..++ .+.|+++|+||||+..++. ++.+.+++++.++|. .+||+||+.
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~ 167 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE 167 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence 9999999999999 99999999888 7999999999999998876 899999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCch
Q 029215 163 QQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~ 182 (197)
+.+++.+|+.+...+.++..
T Consensus 168 NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 168 NINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccHHHHHHHHHHHHHHHhh
Confidence 99999999999998876653
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.3e-34 Score=200.43 Aligned_cols=158 Identities=34% Similarity=0.628 Sum_probs=140.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
++|+++|++|+|||||++++..+.+.+.+.+|.+.. ....+..++..+.+++||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999999988778887543 3456777888899999999999999999989999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|++++++|..+ ..|+..+.... .+.|+++|+||+|+..... +..+++..+++.++. +++++||++|.
T Consensus 81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (161)
T cd04117 81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 78988887665 4799999999999976544 678899999999886 99999999999
Q ss_pred CHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKV 176 (197)
Q Consensus 165 ~i~~~~~~i~~~ 176 (197)
|++++|.+|++.
T Consensus 149 ~v~~~f~~l~~~ 160 (161)
T cd04117 149 NIKESFTRLTEL 160 (161)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.9e-34 Score=200.36 Aligned_cols=161 Identities=33% Similarity=0.671 Sum_probs=140.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998887778775433 344556777799999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++.++++.++. +++++||++|.
T Consensus 82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (165)
T cd01865 82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI 149 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 88988887766 5889999999999976543 567788888888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029215 165 NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (197)
|++++|+++.+.+.+
T Consensus 150 gv~~l~~~l~~~~~~ 164 (165)
T cd01865 150 NVKQVFERLVDIICD 164 (165)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 37
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-34 Score=205.62 Aligned_cols=163 Identities=36% Similarity=0.678 Sum_probs=140.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|++|||||||++++..+.+. +.+.++....+ ...+.+++..+.+++|||||++.+...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 35666665444 34567788889999999999999988888889999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
||++++++++.+ ..|+..+.... .+.|+++|+||+|+...+. +..+++..+++.++. +++++||++|
T Consensus 81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 77888887776 4899999999999975443 566788889888887 9999999999
Q ss_pred CCHHHHHHHHHHHHcCCc
Q 029215 164 QNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~~ 181 (197)
.|++++|.++++.+....
T Consensus 149 ~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 149 LNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887663
No 38
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=4.7e-34 Score=200.02 Aligned_cols=172 Identities=55% Similarity=1.023 Sum_probs=147.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877776677788888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++.+|+.....|...+....++.|+++|+||+|+.+..... ........++.++++.+++..+..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 9999999998667888887666799999999999986542110 11122235678889999999997789999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029215 165 NVKAVFDAAIKVVL 178 (197)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (197)
|++++|+.+++.+.
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.3e-34 Score=208.08 Aligned_cols=163 Identities=26% Similarity=0.450 Sum_probs=141.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.+|||||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||+|++.|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4679999999999999999999999999888888875 344455666777899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||+++++++..+ ..|+..+....++.|+++||||+|+.... +..+++ ++++..+. +|+++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999998 88999888777899999999999996432 334444 67777776 899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.|++++|.++++.+...
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999988754
No 40
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.1e-34 Score=208.70 Aligned_cols=169 Identities=28% Similarity=0.434 Sum_probs=132.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.++||||||+++|..+.+.. +.+|.+..+.. . ....+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~-~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL-K--QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE-E--EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998864 45555433221 1 1245789999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc---------ccCCCCCccccHHHHHHHHHHhCC-----
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---------FIDHPGAVPITTAQGEELRKLIGS----- 152 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~----- 152 (197)
++++++|..+...|........++.|+++|+||+|+.+.... .......+.+..++++.+++..+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999944444443333368999999999999752110 011112456889999999998762
Q ss_pred --------CeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 153 --------PAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 153 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
.+|+|+||++|.||+++|..+++.+..
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999987763
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-34 Score=203.62 Aligned_cols=163 Identities=36% Similarity=0.633 Sum_probs=140.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC----------CeEEEEEEEEcCCcccccccccC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~ 73 (197)
+.+||+++|++|||||||++++..+.+.+.+.+|....+ ...+... +..+.+++||+||++.+..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 569999999999999999999999999888888775433 3333332 45688999999999999999999
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+++++|++++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++.++++.++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~ 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence 99999999999999999999999 78988887654 5889999999999976543 67788899999998
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
. +++++||++|.|++++|+++.+.+.+
T Consensus 152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 152 I-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7 99999999999999999999988764
No 42
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=204.07 Aligned_cols=179 Identities=65% Similarity=1.096 Sum_probs=164.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+|++|+|...+|||+|+..+..+.|+..|.||..+.+...+.++ +..+.+.+|||+||++|+.+++..+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35689999999999999999999999999999999999999999995 99999999999999999999988999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc--ccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|++.+++||+++...|+..+..++|+.|+++||+|.||..+... ...+.....+..++++.++++.|...|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999999999999999999999999999999999854322 23444567789999999999999889999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCch
Q 029215 161 KTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+++.|++++|+..+..++..++
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999998875
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.2e-34 Score=199.38 Aligned_cols=161 Identities=32% Similarity=0.656 Sum_probs=141.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|||||||++++..+.+...+.++.+.. ....+...+..+.+++||+||++.+..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 5899999999999999999999988877777776543 345666788888999999999999999888899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+..... +..+++..+++..+. +++++||++|
T Consensus 82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T cd01869 82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA 149 (166)
T ss_pred EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 999999999999 77988887766 5899999999999876543 677888999998887 9999999999
Q ss_pred CCHHHHHHHHHHHHc
Q 029215 164 QNVKAVFDAAIKVVL 178 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~ 178 (197)
.|++++|.++++.+.
T Consensus 150 ~~v~~~~~~i~~~~~ 164 (166)
T cd01869 150 TNVEQAFMTMAREIK 164 (166)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998875
No 44
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=6.1e-34 Score=199.31 Aligned_cols=169 Identities=53% Similarity=0.960 Sum_probs=144.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+|++++|++|+|||||+.++..+.+...+.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999998888888877777778888888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++|+.....|+..+....++.|+++|+||+|+....... ......+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 9999999998567888887665789999999999996432110 11112345778899999999987789999999999
Q ss_pred CHHHHHHHHHH
Q 029215 165 NVKAVFDAAIK 175 (197)
Q Consensus 165 ~i~~~~~~i~~ 175 (197)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.6e-34 Score=199.46 Aligned_cols=160 Identities=33% Similarity=0.620 Sum_probs=140.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|||||||++++..+.+...+.++..+.+......++..+.+++|||||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999988888888877777777788888999999999999999999889999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
+++++++..+ ..|...+.... .+.|+++|+||+|+.+... +..+++..+++..+. +++++||++|.
T Consensus 81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T smart00173 81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence 9999999998 77766665443 4789999999999976543 567788888888886 99999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029215 165 NVKAVFDAAIKVVL 178 (197)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (197)
|++++|+++++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 46
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=5e-34 Score=203.20 Aligned_cols=179 Identities=23% Similarity=0.409 Sum_probs=140.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCccccccc--------ccCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~~ 77 (197)
+||+|+|.+|||||||++++..+.+...+.++.. ..+...+..++..+.+++|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888875 334455667888899999999997655322 2234688
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCC
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGS 152 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (197)
+|++++|||++++++++.+ ..|...+... .+++|+++|+||+|+...+. +..++++.++. .+++
T Consensus 81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence 9999999999999999988 7777666554 25799999999999976443 55666777655 4565
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHcCCchhhh-----hhhccccccccC
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKK-----KKKKSHRACSIL 197 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~-----~~~~~~~~c~~~ 197 (197)
+++++||++|.|++++|+.+++.+..+.+... +.---+.+|+||
T Consensus 150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 99999999999999999999999887654433 222334559887
No 47
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4.3e-34 Score=201.22 Aligned_cols=167 Identities=28% Similarity=0.546 Sum_probs=139.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|||||||++++..+.+.+.+.+|.+.. ....+..++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999999988888888544 3456778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|+++++++..+ ..|+..+....+ ..| ++|+||+|+..... ..... ...++++++++..+. +++++||++|.
T Consensus 81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~----~~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP----PEEQE-EITKQARKYAKAMKA-PLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc----chhhh-hhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999998 889888876553 456 68899999964210 00011 234677888888886 99999999999
Q ss_pred CHHHHHHHHHHHHcCCc
Q 029215 165 NVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~~~ 181 (197)
|++++|+++.+.+..-+
T Consensus 153 ~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 153 NVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999887644
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.1e-34 Score=198.91 Aligned_cols=160 Identities=31% Similarity=0.583 Sum_probs=139.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|+|||||++++..+.+.+.+.+|....+...+..++..+.+++|||||++.|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888876666667777888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++.++.++ ..|...+.... .+.|+++|+||+|+..... +...++..+++.++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04176 81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence 99999999998 77877776543 5899999999999965433 566677888888886 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|++++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd04176 149 TMVNELFAEIVRQM 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.4e-34 Score=197.84 Aligned_cols=161 Identities=30% Similarity=0.524 Sum_probs=136.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777888875433 344556777899999999999999988888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
|+++++++..+ ..|+..+.....+.|+++|+||+|+.... +. .+..++++..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~ 146 (166)
T cd00877 81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN 146 (166)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 99999999998 78998888877789999999999997322 22 334566666665 899999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q 029215 166 VKAVFDAAIKVVLQPP 181 (197)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (197)
++++|+++++.+.+.+
T Consensus 147 v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 147 FEKPFLWLARKLLGNP 162 (166)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999999887543
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=4.9e-34 Score=198.32 Aligned_cols=158 Identities=27% Similarity=0.514 Sum_probs=136.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.++....+...+..+...+.+++|||||++++..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988888888766666666667778999999999999999888888899999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
++++++++.+ ..|...+.... ++.|+++|+||+|+..... +..+++..++..++. +++++||++
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~ 149 (165)
T cd04140 82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT 149 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence 9999999988 77766665532 5799999999999976433 667778888888887 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIKV 176 (197)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (197)
|.|++++|++|++.
T Consensus 150 g~~v~~~f~~l~~~ 163 (165)
T cd04140 150 NHNVQELFQELLNL 163 (165)
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999854
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.8e-34 Score=197.06 Aligned_cols=159 Identities=36% Similarity=0.626 Sum_probs=139.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+++|||+|++.+..++..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999998888888887767777778888888999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++.++..+ ..|...+.... .+.|+++|+||+|+.... ....++..+++..+. +++++||++|
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (162)
T cd04138 81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR 147 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence 99999999988 66766665543 489999999999996532 567778888888887 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|++++|+++++.+
T Consensus 148 ~gi~~l~~~l~~~~ 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 52
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.4e-34 Score=196.35 Aligned_cols=159 Identities=30% Similarity=0.521 Sum_probs=135.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|.+|||||||++++..+.+.+.+.++.. ..+......++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777766653 334445667788899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
|++++.++... ..|+..+....++.|+++|+||+|+... ...+...+++..+. +++++||++|.|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g 145 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN 145 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999988 8898888777778999999999998432 12345566777776 899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 029215 166 VKAVFDAAIKVVLQP 180 (197)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (197)
++++|+.+++.+.+.
T Consensus 146 v~~l~~~l~~~~~~~ 160 (161)
T cd04124 146 VVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 53
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.7e-33 Score=199.25 Aligned_cols=186 Identities=46% Similarity=0.765 Sum_probs=150.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.|++|+|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+....+..+..+++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887777777666666666778888889999999999888777777889999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
+++.++++.+...|+..+....++.|+++|+||+|+.+.............+..++++.+++..+..+++++||++|.|+
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 161 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV 161 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence 99999999986679998887777899999999999864321111111234456778889999998778999999999999
Q ss_pred HHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215 167 KAVFDAAIKVVLQPPKQKKKKKKSHRACSIL 197 (197)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
+++|+++.+.+..-+. +-++..|||.
T Consensus 162 ~~~f~~l~~~~~~~~~-----~~~~~~~~~~ 187 (187)
T cd04129 162 DDVFEAATRAALLVRK-----SEPGAGCCII 187 (187)
T ss_pred HHHHHHHHHHHhcccC-----cccccCcccC
Confidence 9999999988755443 3345567763
No 54
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.5e-34 Score=198.44 Aligned_cols=159 Identities=42% Similarity=0.845 Sum_probs=146.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|+++||||||+++|..+.+.+.+.+|. .+.+...+..++..+.+++||++|++.+..+....++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999898888 66667788889999999999999999998888888999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
+++++++..+ ..|+..+....+ +.|+++++||.|+.+.+. ++.++++++++.++. +|+++||+++.|
T Consensus 81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN 148 (162)
T ss_dssp TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence 9999999999 799999999886 799999999999987544 888999999999995 999999999999
Q ss_pred HHHHHHHHHHHHc
Q 029215 166 VKAVFDAAIKVVL 178 (197)
Q Consensus 166 i~~~~~~i~~~~~ 178 (197)
+.++|..+++.+.
T Consensus 149 v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 149 VKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7e-34 Score=197.19 Aligned_cols=160 Identities=34% Similarity=0.617 Sum_probs=139.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+++|||||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999888888888877666666778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|++++.++... ..|...+.... .+.|+++|+||+|+..... +...++.++++..+. +++++||++|
T Consensus 82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04145 82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR 149 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence 99999999998 77776665543 5899999999999976443 566778888888887 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|++++|+++++.+
T Consensus 150 ~~i~~l~~~l~~~~ 163 (164)
T cd04145 150 LNVDKAFHDLVRVI 163 (164)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 56
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.5e-33 Score=200.67 Aligned_cols=166 Identities=32% Similarity=0.532 Sum_probs=141.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+||+++|.+|+|||||+++|..+.+.. .+.+|....+ ...+..++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 6777775544 45677888889999999999999999888899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
||++++++++.. ..|+..+....++.|+++|+||+|+..... ....+...++.+++..++. +++++||++|.
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ 152 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999988 788888877667899999999999864321 1223556778888888886 89999999999
Q ss_pred CHHHHHHHHHHHHcCC
Q 029215 165 NVKAVFDAAIKVVLQP 180 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~~ 180 (197)
|++++|+++++.+.+.
T Consensus 153 gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 153 NVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=5.5e-34 Score=197.40 Aligned_cols=158 Identities=34% Similarity=0.588 Sum_probs=138.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC--CeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+||+++|.+++|||||++++..+.+...+.++....+ ...+.+. +..+.+++|||||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888788875443 4455555 677899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|||+++++++..+ ..|+..+....++.|+++|+||+|+..... +..+++..+++.++. +++++||++|
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (162)
T cd04106 81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD 148 (162)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 9999999999988 889888877777999999999999976543 677888999999998 9999999999
Q ss_pred CCHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKV 176 (197)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (197)
.|++++|++|.+.
T Consensus 149 ~~v~~l~~~l~~~ 161 (162)
T cd04106 149 FNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999764
No 58
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.5e-33 Score=200.04 Aligned_cols=168 Identities=43% Similarity=0.671 Sum_probs=132.6
Q ss_pred eeEEEEECCCCCcHHHHHH-HHhhC-----CCCCCCCCcee--eceeEE--------EEECCeEEEEEEEEcCCcccccc
Q 029215 6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~~ 69 (197)
.+||+++|.+|||||||+. ++..+ .+...+.||.. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 55543 34556777773 333222 24678899999999999975 3
Q ss_pred cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc---------CCCCCccccH
Q 029215 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI---------DHPGAVPITT 140 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~---------~~~~~~~~~~ 140 (197)
+...+++++|++++|||++++.+|+.+...|+..+....++.|+++|+||+|+........ .....+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4556889999999999999999999985579888887767899999999999964211000 0011356889
Q ss_pred HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 141 AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++++++++.+++ +|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999998 99999999999999999999874
No 59
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-33 Score=196.48 Aligned_cols=161 Identities=31% Similarity=0.544 Sum_probs=139.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.+||+++|++|+|||||++++..+.+...+.++.... ....+..++..+.+++||+||++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877777776433 34566678877899999999999999888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+...+. ...+++..+++..+...++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (165)
T cd01864 82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE 150 (165)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999988 88988887654 5899999999999976543 6777888999988876889999999
Q ss_pred CCCHHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIKV 176 (197)
Q Consensus 163 ~~~i~~~~~~i~~~ 176 (197)
|.|++++|+++.+.
T Consensus 151 ~~~v~~~~~~l~~~ 164 (165)
T cd01864 151 SQNVEEAFLLMATE 164 (165)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.2e-33 Score=196.68 Aligned_cols=160 Identities=23% Similarity=0.541 Sum_probs=139.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++....+ ...+..++..+.+++|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888875444 456777888899999999999999988888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
|+++++++... ..|+..+.... .+.|+++|+||+|+.+... +..++.+.++...+. +++++|
T Consensus 81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S 148 (168)
T cd04119 81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS 148 (168)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence 99999999988 78888877654 3689999999999975332 577788888888886 899999
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 029215 160 SKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~ 178 (197)
|++|.|++++|++|++.+.
T Consensus 149 a~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 149 ACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 61
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=3.8e-33 Score=195.55 Aligned_cols=171 Identities=50% Similarity=0.926 Sum_probs=144.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|++|||||||++++..+.+.+.+.++....+...+.+++..+.+.+|||+|++.+...+...+.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877666677788888999999999999999888888999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++++.+...|...+....++.|+++|+||+|+.+..... ........+...++++++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 9999999988667888887766789999999999986542211 11111234567788999998887689999999999
Q ss_pred CHHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKVV 177 (197)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (197)
|++++|+++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3e-33 Score=195.21 Aligned_cols=162 Identities=34% Similarity=0.627 Sum_probs=139.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+...+||+++|.++||||||++++..+.+...+.++.+.. ....+..++..+.+++||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 4567999999999999999999999988877776766443 345667788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++|||+++++++..+ ..|...+.... ++.|+++|+||+|+... . +..++++++++..+..+++
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-Q----------VSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-c----------cCHHHHHHHHHHCCCCeEE
Confidence 999999999999998 77876665432 36899999999998632 2 5778889999988866899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++||++|.|+.++|+++++.
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999875
No 63
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-33 Score=202.39 Aligned_cols=163 Identities=33% Similarity=0.557 Sum_probs=140.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+||+++|.+|||||||++++..+.+...+.+|.+. .+...+.+ ++..+.+++|||+|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999887777777743 33445555 4667899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++++|..+ ..|+..+.... ...|+++|+||+|+..... +..+++.++++.++. +++++||+
T Consensus 82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak 149 (211)
T cd04111 82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR 149 (211)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence 9999999999999 77888776654 3578899999999976544 778888999999996 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|++.+.+.
T Consensus 150 ~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 150 TGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 64
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=201.56 Aligned_cols=169 Identities=30% Similarity=0.577 Sum_probs=145.9
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
|...+.+||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+++|||+|++.+..++..++..+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 6677789999999999999999999999988777777764333 456677888889999999999999988888999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 80 VFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
++++|||+++++++..+ ..|+..+.... ++.|+++++||+|+..... +..++++++++.++. +++++
T Consensus 81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~ 148 (210)
T PLN03108 81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA 148 (210)
T ss_pred EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence 99999999999999988 77877666554 5899999999999976543 678889999999987 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCc
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
||+++.|++++|+++++.+.++.
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887543
No 65
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=190.84 Aligned_cols=165 Identities=31% Similarity=0.542 Sum_probs=145.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.+++.|+|.+-+|||+|++.++.+.+.+-.+||.+.. +...+.. ++..+.+++|||+||++|+++.++++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57999999999999999999999999998888988544 3433433 678899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
+|||+++++||+.+ +.|+.....+. |..++ .+||+|+|+...+. ++.++++.+++..|+ .|+|+|
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS 154 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS 154 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence 99999999999999 89987766554 66666 68999999987665 999999999999999 999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCc
Q 029215 160 SKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (197)
|++|.|+++.|+.+.+.+....
T Consensus 155 ak~g~NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQAI 176 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 66
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=187.63 Aligned_cols=165 Identities=30% Similarity=0.552 Sum_probs=151.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.-+|++++|+.|+|||+|+.++..+.+.++...|++..+ +..+.+.++.+.++||||+||++|++..+.+++.|.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 458999999999999999999999999998888886665 5567788999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++++|..+ ..|+.-.+... +++-+++++||.|+.++++ ++..++..|+++... .+.++||++
T Consensus 88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T 155 (214)
T KOG0086|consen 88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT 155 (214)
T ss_pred EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence 9999999999999 99998888877 6888899999999988877 999999999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcCCc
Q 029215 163 QQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~ 181 (197)
|+++++.|-...++++.+.
T Consensus 156 GeNVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILNKI 174 (214)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 9999999999888887654
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.9e-33 Score=193.67 Aligned_cols=159 Identities=31% Similarity=0.566 Sum_probs=138.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++..+.+...+.++.... ....+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999998877777776443 3455667788899999999999999988889999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|+++++++..+ ..|+..+.... ++.|+++++||+|+..... +..+++..+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd04113 81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE 148 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence 99999999998 78888776554 6899999999999976443 678888999999985 99999999999
Q ss_pred CHHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKVV 177 (197)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (197)
|++++|+++++.+
T Consensus 149 ~i~~~~~~~~~~~ 161 (161)
T cd04113 149 NVEEAFLKCARSI 161 (161)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.1e-33 Score=193.62 Aligned_cols=161 Identities=34% Similarity=0.582 Sum_probs=140.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.++||||||++++..+.+...+.++.... ....+..++..+.+++||+||++++..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999998877777777543 45567778888899999999999999998889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++.++..+ ..|+..+....+ +.|+++|+||+|+...+. +..++.+.+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (165)
T cd01868 82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD 149 (165)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 789888877764 699999999999976443 677788888888776 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIKVV 177 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (197)
|.|++++|+++++.+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 69
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.9e-33 Score=194.55 Aligned_cols=162 Identities=31% Similarity=0.543 Sum_probs=138.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|.+|||||||++++..+.+.+.+.+|....+ ...+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999988988886444 4567778888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhh-CC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHY-AP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
+++++++... ..|+..+... .+ +.|+++|+||+|+.+... .....+++..+++.++. +++++||++|.
T Consensus 82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~ 151 (170)
T cd04108 82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE 151 (170)
T ss_pred CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 9999999998 7888876544 33 578999999999865321 11346677888888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029215 165 NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (197)
|++++|+.+++.+..
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 70
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.5e-33 Score=202.38 Aligned_cols=163 Identities=30% Similarity=0.553 Sum_probs=143.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|++|||||||+++|..+.+...+.+|.+.. ....+.+++..+.+++||++|++++..++..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999998877777777544 45677788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+..... +..++++.++..++. +++++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~ 158 (216)
T PLN03110 91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE 158 (216)
T ss_pred EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999988 88988887765 4899999999999976544 677888889888887 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.|++++|+++++.+.+
T Consensus 159 g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 159 ATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987743
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.7e-33 Score=193.48 Aligned_cols=163 Identities=28% Similarity=0.574 Sum_probs=141.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|+|||||++++..+.+...+.++.+.. ....+..++....+.+||+||++++..+...+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877766665433 34556677878899999999999999888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||+++++++..+ ..|+..+.... ++.|+++|+||.|+..... +..++++.++...+. +++++||++
T Consensus 83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~ 150 (168)
T cd01866 83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT 150 (168)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78988887765 6899999999999975433 677888889888887 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
+.|++++|.++.+.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8.3e-33 Score=192.67 Aligned_cols=161 Identities=31% Similarity=0.584 Sum_probs=141.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.|..++..+++.++++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 78999999999999999999999988888888876666677788888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++++.. ..|...+.... .+.|+++++||+|+.+... ...+++..+++.++..+++++||+++.
T Consensus 82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 9999999998 77777665533 5899999999999976543 567778888888885599999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029215 165 NVKAVFDAAIKVVL 178 (197)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (197)
|++++|+++.+.+.
T Consensus 151 ~i~~~f~~i~~~~~ 164 (168)
T cd04177 151 NVDEVFIDLVRQII 164 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998654
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.7e-33 Score=197.98 Aligned_cols=155 Identities=26% Similarity=0.473 Sum_probs=134.7
Q ss_pred ECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH
Q 029215 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 90 (197)
Q Consensus 12 ~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (197)
+|.++||||||++++..+.+...+.+|.+. .....+..++..+.+++|||+|+++|..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999998888888888854 4455677788889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215 91 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (197)
.+|..+ ..|+..+....+++|+++|+||+|+.... +..+. .++++..++ +|++|||++|.||+++|
T Consensus 81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF 146 (200)
T ss_pred HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence 999998 78999898877799999999999985421 33333 467777777 89999999999999999
Q ss_pred HHHHHHHcCC
Q 029215 171 DAAIKVVLQP 180 (197)
Q Consensus 171 ~~i~~~~~~~ 180 (197)
+++++.+.+.
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988664
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=7.3e-33 Score=190.78 Aligned_cols=155 Identities=27% Similarity=0.383 Sum_probs=128.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|||||||+.++..+.|.+.+.++. ..+...+.+++..+.+++||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999988877665553 34456678888889999999999975 235678999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++++|+.+ ..|+..+.... ++.|+++|+||+|+.... .+.+..++++++++..+..+|++|||++|.
T Consensus 75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 9999999998 67888887665 579999999999985321 123778888999988753499999999999
Q ss_pred CHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKV 176 (197)
Q Consensus 165 ~i~~~~~~i~~~ 176 (197)
||+++|.++++.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 75
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=187.08 Aligned_cols=163 Identities=33% Similarity=0.593 Sum_probs=147.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.-|||+++|..|+|||+|+++++.+.|++....|++..+ ...+.+++..+.++||||+|+++|+++..++++.|+++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 358999999999999999999999999988888886554 5678899999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++..++|+-+ .+|+..+.++. ..+-.++|+||.|+.+.++ +....+++|++.... -++++||++
T Consensus 86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsake 153 (213)
T KOG0095|consen 86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKE 153 (213)
T ss_pred EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccc
Confidence 9999999999998 99999999998 5677799999999988765 888888999988766 678999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
-++++.+|..++-.+..
T Consensus 154 a~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999998877654
No 76
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=188.82 Aligned_cols=166 Identities=30% Similarity=0.614 Sum_probs=150.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...||++++|.--+|||||+-|++.+.|......|.. ......+.+.+....+.||||+||++|..+-+-+++..++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4579999999999999999999999999888777773 444566778888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++|++||+.+ ..|...++... ..+.++||+||+|+.+++. ++..++.+.++..|. .|+++||+
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk 158 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK 158 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence 99999999999999 99999988877 5788899999999988876 999999999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+.||.++|+.+.+.+.++.
T Consensus 159 ~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 159 DNVGISELFESLTAKMIEHS 178 (218)
T ss_pred cccCHHHHHHHHHHHHHHHh
Confidence 99999999999988776543
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=7.2e-33 Score=202.96 Aligned_cols=162 Identities=27% Similarity=0.428 Sum_probs=138.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+...+.+|..+.+...+.+++..+.++||||+|++.|..++..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888888877777778888989999999999999998888888889999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+++.++|+.+ ..|...+... ..+.|+++|+||+|+..... +..+++.+++......+++
T Consensus 81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence 9999999998 7776666432 24799999999999975433 6677777777654333899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++||++|.|++++|++|++.+..
T Consensus 150 evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999997643
No 78
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=4e-33 Score=193.72 Aligned_cols=159 Identities=30% Similarity=0.529 Sum_probs=135.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcEEEEEEe
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d 86 (197)
||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+++||+||++. +......+++++|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999988888888887666666777888889999999999985 34456677889999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
++++++|+.+ ..|...+.... .+.|+++|+||+|+..... +..+++.++++..+. +++++||++|
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~ 148 (165)
T cd04146 81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED 148 (165)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence 9999999988 77877776653 4899999999999865443 677888899999886 9999999999
Q ss_pred C-CHHHHHHHHHHHHc
Q 029215 164 Q-NVKAVFDAAIKVVL 178 (197)
Q Consensus 164 ~-~i~~~~~~i~~~~~ 178 (197)
. |++++|+++++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4 99999999998654
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=9.6e-33 Score=192.70 Aligned_cols=160 Identities=29% Similarity=0.529 Sum_probs=138.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCccccc-ccccCCCCCCcEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFIL 83 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i~ 83 (197)
.++|+++|++|||||||++++..+.+...+.++... .....+..++..+.+++||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999999887777777643 344567778888999999999999886 577888999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++..+ ..|+..+.... .++|+++|+||+|+..... +..++++++++..++ +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~ 149 (170)
T cd04115 82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSAK 149 (170)
T ss_pred EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEecc
Confidence 9999999999999 88988887654 5799999999999976544 677888899998886 99999999
Q ss_pred C---CCCHHHHHHHHHHHH
Q 029215 162 T---QQNVKAVFDAAIKVV 177 (197)
Q Consensus 162 ~---~~~i~~~~~~i~~~~ 177 (197)
+ +.+++++|.++++.+
T Consensus 150 ~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 150 DPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcCCCCHHHHHHHHHHHh
Confidence 9 899999999998765
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1e-32 Score=192.23 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=137.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeecee-EEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
+++.+||+++|.+|||||||++++..+.+. ..+.+|....+. ..+..++..+.+.+||++|++.+..++..+++++|+
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 357899999999999999999999999998 888888865553 456678888889999999999999999989999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+++|||++++.++..+ ..|+..+... .+.|+++|+||+|+.+... ....+..++++.++...++++||
T Consensus 81 ~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T cd01892 81 ACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSS 148 (169)
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEe
Confidence 9999999999999887 6777655322 3799999999999965432 23345567778888755799999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|.|++++|+.+++.+..
T Consensus 149 ~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 149 KLGDSSNELFTKLATAAQY 167 (169)
T ss_pred ccCccHHHHHHHHHHHhhC
Confidence 9999999999999998764
No 81
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=1.4e-32 Score=193.55 Aligned_cols=177 Identities=31% Similarity=0.528 Sum_probs=145.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
.||+++|.+|+|||||++++..+.+...+.++....+...+...+..+.+++||+||++++..++..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777887766666667777778889999999999999888888999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
+++..+++.+ ..|...+.... .+.|+++++||+|+...+. +..++...+++.++. +++++||+++.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (180)
T cd04137 82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE 149 (180)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999998 55544444432 4789999999999965433 555667777887786 89999999999
Q ss_pred CHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215 165 NVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL 197 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
|+.++|.++.+.+...+.... .....+|+||
T Consensus 150 gv~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~ 180 (180)
T cd04137 150 NVEEAFELLIEEIEKVENPLD--PGQKKKCSIM 180 (180)
T ss_pred CHHHHHHHHHHHHHHhcCCCC--CCCCCCceeC
Confidence 999999999999876654433 2255679887
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.6e-32 Score=189.43 Aligned_cols=159 Identities=32% Similarity=0.563 Sum_probs=134.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeece-eEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+||+++|++|||||||++++..+ .+.+.+.++.+..+ ...+.. .+..+.+++|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 57778888874333 333444 356789999999999999888889999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||+++++++..+ ..|+..+....++.|+++|+||+|+.+... +...+++.++...+. +++++||++
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR 148 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 99999999999988 889888877766899999999999966543 556666777777776 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIKVV 177 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (197)
+.|++++|+++++.+
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (164)
T cd04101 149 GVGYEEPFESLARAF 163 (164)
T ss_pred CCChHHHHHHHHHHh
Confidence 999999999999875
No 83
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=5.6e-32 Score=188.86 Aligned_cols=169 Identities=65% Similarity=1.110 Sum_probs=143.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|+|||||+++|+.+.+...+.++....+.......+..+.+++||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999987777788777777777778888999999999999888888888899999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC-CCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID-HPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
+++++++......|+..+....++.|+++|+||+|+......... ......+..+++.+++..++..+++++||++|.|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998877898888887778999999999999765431100 0112235677888888888877999999999999
Q ss_pred HHHHHHHHHH
Q 029215 166 VKAVFDAAIK 175 (197)
Q Consensus 166 i~~~~~~i~~ 175 (197)
++++|+++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.1e-32 Score=188.27 Aligned_cols=161 Identities=37% Similarity=0.678 Sum_probs=138.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|+|||||++++....+...+.++.... ....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999988876666666543 3456667787789999999999999888888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|++++++++.+ ..|+..+..+. ++.|+++|+||+|+..... +..+.++++++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 148 (164)
T smart00175 81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 99999999998 67988887766 6899999999999876433 567788888888887 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029215 165 NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (197)
|++++|+++.+.+.+
T Consensus 149 ~i~~l~~~i~~~~~~ 163 (164)
T smart00175 149 NVEEAFEELAREILK 163 (164)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 85
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=193.93 Aligned_cols=163 Identities=36% Similarity=0.626 Sum_probs=150.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+|++++|.+|+|||+|..++..+.|.+.|.||+++.+...+.+++..+.+.|+||+|+++|..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|+++++.||+.+ ..+.+.+ +... ..+|+++||||+|+...+. +..++++.++..+++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 6666666 3333 4789999999999987665 999999999999999 699999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
+.+++++|..+++.+..
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998876
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.2e-32 Score=188.82 Aligned_cols=164 Identities=32% Similarity=0.599 Sum_probs=138.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|||||||++++....+...+.++.. +.....+...+..+.+++||+||++.+..++..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777777764 344456677888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
|+++++++... ..|...+.... .++|+++|+||+|+..... ...++...+.+..+..+++++||
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999887 67766554433 2799999999999975332 56677788888887569999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|+++.+.+.+..
T Consensus 150 ~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 150 KEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999887653
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=6.9e-32 Score=186.68 Aligned_cols=158 Identities=36% Similarity=0.617 Sum_probs=135.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|+++||||||++++++..+...+.++.. +.....+..++..+.+++||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988776666664 445566677787788999999999999988888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|++++++|... ..|+..+.... .+.|+++++||+|+.+... ...++...+++..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (161)
T cd01861 81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH 148 (161)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence 99999999998 77877776554 3799999999999964433 577788888888886 89999999999
Q ss_pred CHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKV 176 (197)
Q Consensus 165 ~i~~~~~~i~~~ 176 (197)
|++++|+++.+.
T Consensus 149 ~v~~l~~~i~~~ 160 (161)
T cd01861 149 NVKELFRKIASA 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999999875
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.1e-31 Score=186.05 Aligned_cols=160 Identities=36% Similarity=0.631 Sum_probs=138.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++++|||||++++..+.+...+.++... .....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999999887766666654 3356677888889999999999999988888889999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
+|+++++++... ..|+..+.... ++.|+++++||+|+..... ...++...+++..+. +++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd01860 81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG 148 (163)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999998 78888777665 6899999999999875433 567788888888886 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|+.++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 89
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=193.43 Aligned_cols=165 Identities=30% Similarity=0.587 Sum_probs=138.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..+||+++|.+|||||||+++|..+.+. .+.++.... ....+..++..+.+++|||||+++|..++..+++++|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999988774 455555433 34556677878899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++++|..+...|...+.... .+.|+++|+||+|+..... +..+++..++...+. +++++||+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk 160 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 9999999999998566776665443 4789999999999976543 667788888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
++.|++++|+++.+.+...+
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999886543
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.5e-31 Score=184.94 Aligned_cols=159 Identities=35% Similarity=0.653 Sum_probs=135.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++|+|||||+++++.+.+...+.++.. ......+...+..+.+.+||+||++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888766666653 334455666777789999999999999999988999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|+++++++... ..|+..+.... .+.|+++++||+|+..... +..+++.++++..+. +++++|++++.
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (162)
T cd04123 81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK 148 (162)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 99999999988 77888877765 3799999999999975433 566777788888887 89999999999
Q ss_pred CHHHHHHHHHHHH
Q 029215 165 NVKAVFDAAIKVV 177 (197)
Q Consensus 165 ~i~~~~~~i~~~~ 177 (197)
|++++++++.+.+
T Consensus 149 gi~~~~~~l~~~~ 161 (162)
T cd04123 149 GIEELFLSLAKRM 161 (162)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.1e-31 Score=194.41 Aligned_cols=160 Identities=25% Similarity=0.417 Sum_probs=133.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCC-CCcEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL 83 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~ 83 (197)
+||+++|++|||||||++++..+.+. ..+.++.. +.+...+.+++..+.+++||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 56666654 55566777888889999999999982 23334555 8999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.+|... ..|+..+.... .+.|+++|+||+|+..... +..+++++++...++ +++++||+
T Consensus 79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~ 146 (221)
T cd04148 79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG 146 (221)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence 9999999999988 77877776654 5899999999999976544 677788888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
++.|++++|+++++.+..+
T Consensus 147 ~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 147 LQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999988643
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2e-31 Score=184.72 Aligned_cols=160 Identities=34% Similarity=0.617 Sum_probs=137.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|++|+|||||++++....+...+.++....+......++..+.+++||+||++.+..++..+++.++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999988888888877777777788888999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
++++.++... ..|...+.... .+.|+++|+||+|+..... ....+...+.+.++. +++++||++|.
T Consensus 81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 148 (164)
T cd04139 81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ 148 (164)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence 9999999988 55655555442 4899999999999976322 456677778888886 99999999999
Q ss_pred CHHHHHHHHHHHHc
Q 029215 165 NVKAVFDAAIKVVL 178 (197)
Q Consensus 165 ~i~~~~~~i~~~~~ 178 (197)
|++++|+++.+.+.
T Consensus 149 gi~~l~~~l~~~~~ 162 (164)
T cd04139 149 NVEKAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.9e-31 Score=183.57 Aligned_cols=157 Identities=32% Similarity=0.647 Sum_probs=134.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|++++|||||++++....+...+.++....+ ...+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999888666667665433 344566777889999999999999888888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+++++++... ..|+..+..+. ++.|+++|+||+|+.... ...++..++++..++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01863 81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR 147 (161)
T ss_pred ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence 99999999988 66888887765 589999999999997432 466788888888887 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKV 176 (197)
Q Consensus 164 ~~i~~~~~~i~~~ 176 (197)
.|++++++++.+.
T Consensus 148 ~gi~~~~~~~~~~ 160 (161)
T cd01863 148 DGVQQAFEELVEK 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 94
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.5e-31 Score=182.45 Aligned_cols=164 Identities=30% Similarity=0.429 Sum_probs=128.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|+|||||++++..+.+.+.++.+. ..+.......+..+.+++|||||++.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998866544433 2333444556677899999999998887777777899999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCC
Q 029215 87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQN 165 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 165 (197)
++++++++.+...|+..+....++.|+++|+||+|+.+.... ....+++..++..+. ..+++++||++|.|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN 151 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence 999999999856788888776678999999999999764320 011233334444443 23899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 029215 166 VKAVFDAAIKVVLQ 179 (197)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (197)
++++|+.+.+.+.+
T Consensus 152 v~~lf~~~~~~~~~ 165 (166)
T cd01893 152 VSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998876
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-30 Score=181.27 Aligned_cols=165 Identities=31% Similarity=0.580 Sum_probs=137.3
Q ss_pred CCC-cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCC
Q 029215 1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78 (197)
Q Consensus 1 ~~~-~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 78 (197)
|.+ ...++|+++|++|+|||||++++..+.+.+.+.++.. +.....+.+.+..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 553 4569999999999999999999998887666666654 33444566788888999999999999988888899999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 79 DVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
|++++|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+..+.+.+.... ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~ 148 (169)
T cd04114 81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE 148 (169)
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence 999999999999999888 78887776655 4799999999999975443 556666777777775 8999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029215 158 CSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (197)
+||++|.|++++|+++.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=4.9e-31 Score=183.58 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=120.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.++||||||++++..+.+.. +.+|.+..+. .+.. ..+.+++|||||++.++.+++.+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998877643 4555543332 2223 34789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH---hC-CCeEEEe
Q 029215 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL---IG-SPAYIEC 158 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 158 (197)
|||++++.++......|...+... .++.|+++|+||+|+.+. +..+++++.... .+ ..+++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence 999999999998844455555443 257999999999998642 344555554321 11 1268899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029215 159 SSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (197)
||++|.|++++|+||.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999865
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=7.8e-31 Score=181.03 Aligned_cols=158 Identities=36% Similarity=0.677 Sum_probs=136.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|++|||||||+++++...+...+.++....+...+...+..+.+++||+||++.+..++..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999888888888888766677777787788999999999999888888889999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCC
Q 029215 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQN 165 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (197)
++++++... ..|...+.... ...|+++|+||+|+..... ...+++.+++..++. +++++||+++.|
T Consensus 81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 148 (160)
T cd00876 81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN 148 (160)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence 999999988 56655555544 4899999999999976443 677888888888885 999999999999
Q ss_pred HHHHHHHHHHHH
Q 029215 166 VKAVFDAAIKVV 177 (197)
Q Consensus 166 i~~~~~~i~~~~ 177 (197)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=1.5e-30 Score=185.80 Aligned_cols=161 Identities=25% Similarity=0.421 Sum_probs=132.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||++++..+.+...+.++........+.+.+..+.+++||+||+..+..++..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999998887777777655556677788888999999999999988888899999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCCCeEEEeccCCCC
Q 029215 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSPAYIECSSKTQQ 164 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (197)
+++.+++.. ..|...+.... .++|+++|+||+|+..... .+...+..+... ..+. +++++||++|.
T Consensus 81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~ 149 (198)
T cd04147 81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE 149 (198)
T ss_pred CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence 999999998 77777666654 4799999999999865311 134444444433 3444 89999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 029215 165 NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 165 ~i~~~~~~i~~~~~~ 179 (197)
|++++|+++++.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (198)
T cd04147 150 NVLEVFKELLRQANL 164 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998753
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=4.8e-31 Score=185.62 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=121.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.++||||||++++..+.+. .+.+|.+..+. .+... .+.+++||+||++.++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999987775 35566643332 23333 4788999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC-------eE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP-------AY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 155 (197)
|||+++++++......+...+.... ++.|+++++||+|+... ...++ +.+..+.. .+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence 9999999999988444444444322 58999999999998653 22222 33333321 35
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+++||++|+|++++|+||++.+.++
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhhc
Confidence 5899999999999999999887654
No 100
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.7e-33 Score=183.81 Aligned_cols=166 Identities=36% Similarity=0.605 Sum_probs=144.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEE---------CCeEEEEEEEEcCCcccccccccCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVV---------DGSTVNLGLWDTAGQEDYNRLRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~l~i~D~~G~~~~~~~~~~~~ 75 (197)
-++.+.+|.+|+|||||+.+++.+.|......|.+..+. ..+.+ .+..+.+++|||+||++|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 478899999999999999999999998888888755543 22222 23578999999999999999999999
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
++|=+++++||+++.+||-+. ..|+..++.+. .+--+++++||+|+.+.+. ++.+++.+++.+++.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl- 156 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL- 156 (219)
T ss_pred HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence 999999999999999999999 89998887765 6777899999999988766 999999999999998
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCCchh
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
||||+||-+|.++++..+.+...++++.++
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888766543
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=5.8e-31 Score=185.69 Aligned_cols=163 Identities=20% Similarity=0.331 Sum_probs=123.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..++|+++|.+|||||||++++..+.+... .+|.+.. ....+.. ++..+.+++|||||++.+..+|..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998877654 4554322 2223332 345688999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hC---CCeE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IG---SPAY 155 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~ 155 (197)
+|||+++..++... ..|+..+.... .+.|+++|+||+|+... ...++...+... .. ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence 99999999988887 66665554433 47999999999998643 233444444321 11 1267
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+++||++|.|+++++++|++.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999886544
No 102
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=3e-30 Score=177.55 Aligned_cols=157 Identities=39% Similarity=0.724 Sum_probs=134.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+||+++|+++||||||++++..+.+...+.++... .....+...+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887776666643 44456666777789999999999999888889999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
|+++++++..+ ..|+..+.... ++.|+++++||+|+..... ...++.++++...+. +++++||+++.
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~ 148 (159)
T cd00154 81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE 148 (159)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence 99999999988 77888887776 6899999999999963332 567888888888776 99999999999
Q ss_pred CHHHHHHHHHH
Q 029215 165 NVKAVFDAAIK 175 (197)
Q Consensus 165 ~i~~~~~~i~~ 175 (197)
|+++++++|.+
T Consensus 149 ~i~~~~~~i~~ 159 (159)
T cd00154 149 NVEELFQSLAE 159 (159)
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 103
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.9e-30 Score=182.79 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=121.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.+||+++|+++||||||++++..+.+.. +.+|.+..+. .+... .+.+++||+||++.++.++..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 456999999999999999999998877754 5566654332 33333 4788999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (197)
|||+++++++......+...+.... .+.|+++|+||.|+.+.. ..+++.... +.... .+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~ 157 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEVTEKLGLHSVRQRNW-YIQG 157 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHHHHHhCCCcccCCcE-EEEe
Confidence 9999999999988444554444322 578999999999986531 222221111 11111 4668
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+||++|.|++++|++|.+.+.++.
T Consensus 158 ~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998877654
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3e-30 Score=179.93 Aligned_cols=157 Identities=16% Similarity=0.255 Sum_probs=122.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.++||||||++++..+.+.. +.+|.+..+. .+... .+.+++||+||++.+...+..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887654 5666543332 23333 47888999999999998898999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHh-hhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-----CeEEEecc
Q 029215 88 ISKASYENVAKKWIPELR-HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSS 160 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~-~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa 160 (197)
++++++.+. ..|+..+. ... .+.|+++|+||+|+... +..+++++++...+. ..++++||
T Consensus 77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999998 55554443 322 46899999999999643 456666666543221 15779999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|+||.+.+....
T Consensus 144 ~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 144 RSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999998876543
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=4.4e-30 Score=179.98 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=118.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+. .+.+|.+..+. .+... .+.+++||+||++.+..++..+++++|++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999877774 35566644332 23333 4788999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (197)
|||+++++++......|...+... .++.|+++|+||+|+.+.. ..+++.+... .... .+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~ 153 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNW-YIQP 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcE-EEEE
Confidence 999999999998844444444443 2579999999999996532 2222222111 1121 4668
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+||++|.|++++|+||.+.+.
T Consensus 154 ~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eeCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987753
No 106
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.6e-32 Score=175.27 Aligned_cols=159 Identities=33% Similarity=0.641 Sum_probs=141.5
Q ss_pred EEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 10 VTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 10 ~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+++|.+++|||+|+-|+..+.|. .+..+|.+..+ ...+..++..+.+++|||+||++|++....+++++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999999988874 44555555444 45667789999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
.+..||+.. +.|+..+.++. ..+.+++++||+|+.+++- +..++++.+++.++. |+.++||++|.++
T Consensus 81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence 999999999 99999999988 5888999999999988765 788999999999998 9999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 029215 167 KAVFDAAIKVVLQP 180 (197)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (197)
+..|-.|.+.+.+.
T Consensus 149 d~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 149 DLAFLAIAEELKKL 162 (192)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999887654
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=4.4e-31 Score=183.16 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=121.9
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
|+++|.+|||||||++++..+.+...+.+|.+... ..++...+.+.+||+||++.++.++..+++++|++++|||++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 79999999999999999999888777777765332 223444588999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH----HHHHHHHHHhCCCeEEEeccCC--
Q 029215 89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT----AQGEELRKLIGSPAYIECSSKT-- 162 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~-- 162 (197)
++.++... ..|+..+....+++|+++|+||+|+..... +.. .++.++++..++ +++++||++
T Consensus 79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 146 (164)
T cd04162 79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG 146 (164)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence 99999888 666666654446899999999999965432 111 234556666666 788888888
Q ss_pred ----CCCHHHHHHHHHH
Q 029215 163 ----QQNVKAVFDAAIK 175 (197)
Q Consensus 163 ----~~~i~~~~~~i~~ 175 (197)
++||+++|+.++.
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998864
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=5.6e-30 Score=176.79 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=114.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.++||||||++++..+.+.. +.+|.+..+. .+... .+.+++||+||++++..++..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 489999999999999999998887763 5666543332 23333 4788999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHH----HhCCCeEEEecc
Q 029215 87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRK----LIGSPAYIECSS 160 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~Sa 160 (197)
++++.++......|...+.... .+.|+++++||+|+.+.. ..++ ...+.. ..+. .++++||
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa 143 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNW-YIQATCA 143 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCE-EEEEeeC
Confidence 9999999988444554444322 478999999999996431 1222 222211 1122 4679999
Q ss_pred CCCCCHHHHHHHHHH
Q 029215 161 KTQQNVKAVFDAAIK 175 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (197)
++|.|++++|++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.7e-29 Score=181.52 Aligned_cols=166 Identities=27% Similarity=0.482 Sum_probs=138.7
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
.....+|++++|++|||||||++++..+.+...+.+|....+ ...+..++..+.+++||++|++.+..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 445679999999999999999999988888888888875444 3445567788999999999999998888888899999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+++|||+++..++..+ ..|+..+....++.|+++++||+|+.+.. ... +...+++..+. .++++||
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~-~~~~~~~~~~~-~~~e~Sa 150 (215)
T PTZ00132 85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKA-RQITFHRKKNL-QYYDISA 150 (215)
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCH-HHHHHHHHcCC-EEEEEeC
Confidence 9999999999999998 78888887666789999999999986432 222 23456667776 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|.+|++.+...+
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999987654
No 110
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=167.54 Aligned_cols=164 Identities=31% Similarity=0.597 Sum_probs=147.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.||..++|.-|+|||+|+.++....|..+.+.|++..+ ...+.+.+..+.+++|||+|+++|+...+++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 3579999999999999999999999999888888886555 456778999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++.+.++..+ ..|+.-.+... |+..+++++||.|+...++ +.++++++|+.+.|. .++++||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999988 89987776665 7999999999999988777 999999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
+|.++++.|-...+.+.+
T Consensus 157 tg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 999999999777776654
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=2.6e-29 Score=175.87 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=117.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|++|||||||++++....+ ..+.+|.+.. ...+..++ +.+++||+||++.++.++..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 3568999999999999999999997754 3444554422 22344443 778999999999988888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----hCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (197)
|||++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...+++.++... .+. +++
T Consensus 88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~ 153 (173)
T cd04154 88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RIQ 153 (173)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EEE
Confidence 9999999999887 5555444322 258999999999999653 233444444432 233 899
Q ss_pred EeccCCCCCHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~ 175 (197)
++||++|.|++++|+++++
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999864
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.4e-28 Score=172.24 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=116.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..++|+++|++++|||||++++..+.+.. +.+|....+. .+..++ +.+.+||+||++.+...+..+++++|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999887754 4555543332 333443 7788999999999998999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHH-HHHH----HHhCCCeEEEe
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELR----KLIGSPAYIEC 158 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~ 158 (197)
+|+++++++......+...+.... .+.|+++++||+|+... ...++. ..+. +..+. +++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~ 156 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGC 156 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEec
Confidence 999999998887444444444332 57999999999998653 222222 2221 22333 78999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029215 159 SSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (197)
||++|+|++++|++|.+
T Consensus 157 SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 157 CALTGEGLPEGLDWIAS 173 (174)
T ss_pred ccCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=6.1e-28 Score=171.68 Aligned_cols=150 Identities=21% Similarity=0.309 Sum_probs=118.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-----CeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
+||+++|.++||||||++++..+.+.+.+.+|.+..+ ...+.++ +..+.+++|||+|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888888875433 2334442 567899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeecCCccCCcccccCCCCCccccH
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITT 140 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 140 (197)
+|+|||++++++|+.+ ..|+..+... . +++|+++||||+|+.+.+.. ......
T Consensus 81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~~ 153 (202)
T cd04102 81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLVL 153 (202)
T ss_pred EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHHh
Confidence 9999999999999999 8898887553 1 37899999999999765320 001122
Q ss_pred HHHHHHHHHhCCCeEEEeccCCCC
Q 029215 141 AQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
.....++.+.+. +.++.++.+..
T Consensus 154 ~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 154 TARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHhhhHHHhcCC-ceEEEecCCcc
Confidence 235567888888 78888888643
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=7.5e-29 Score=171.58 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=112.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+|+++|.++||||||++++.... +...+.+|.+.... .+.. ..+.+++|||||++.+..++..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 34556666643322 2222 34788899999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHHhC-CCeEEEe
Q 029215 87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLIG-SPAYIEC 158 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~ 158 (197)
++++.++... ..|+..+.... .++|+++|+||+|+.... ..++.... ..... ..+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence 9999998877 55555443321 479999999999996532 11222211 11111 1258899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029215 159 SSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (197)
||++|.|++++|++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999999865
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=6.1e-29 Score=172.97 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=116.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|+++||||||++++.++ +...+.+|.+.. ...+...+ +.+++||+||++.++.+|..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 666667776543 23344444 7888999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCCC-
Q 029215 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKTQ- 163 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~- 163 (197)
++..++... ..|+..+.... .+.|+++|+||+|+....... .........++++..+. ..++++||++|
T Consensus 77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999988 66666554432 589999999999997643100 00000111223323332 25677999998
Q ss_pred -----CCHHHHHHHHHH
Q 029215 164 -----QNVKAVFDAAIK 175 (197)
Q Consensus 164 -----~~i~~~~~~i~~ 175 (197)
.|+.+.|+||.+
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999975
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3.4e-28 Score=172.68 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=119.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++.++.+. .+.+|.... ...+.+++ +.+++||+||++.+...|..++++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45789999999999999999999987763 445554332 23444555 678899999999888888888999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhh-hC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215 84 AFSLISKASYENVAKKWIPELRH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|+|+++.+++... ..++..+.. .. .+.|+++++||+|+... +..++.++.....
T Consensus 93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence 9999999998877 444444433 22 57999999999998642 4455555554421
Q ss_pred ----CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 151 ----GSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
...++++|||++|.|++++|+|+.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 112689999999999999999998753
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=5.4e-28 Score=166.78 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=112.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|++++|||||++++..+.+.. +.+|....+. .+... .+.+++|||||++.+..++..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998777643 3455433222 23333 37889999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-HH----HHhCCCeEEEeccC
Q 029215 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-LR----KLIGSPAYIECSSK 161 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~ 161 (197)
+++.++......|...+.... .+.|+++|+||+|+.... ..++... +. ...+. +++++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~ 143 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAI 143 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeecc
Confidence 999888776455554444332 589999999999986432 1122211 11 11123 69999999
Q ss_pred CCCCHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIK 175 (197)
Q Consensus 162 ~~~~i~~~~~~i~~ 175 (197)
+|.|++++|+++++
T Consensus 144 ~~~gi~~l~~~l~~ 157 (158)
T cd04151 144 KGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1e-27 Score=167.74 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=123.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|+.+||||||++++..+.+.. ..||.+.. ...+..++ +.+.+||++|+..++..|+.+++++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 4678999999999999999999998765433 44444333 23344556 67889999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----CCCeEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-----GSPAYI 156 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 156 (197)
||+|.++.+.+.+....+...+.... .++|++|++||+|+.+. ...+++....... ....++
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v~ 154 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSVF 154 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEEE
Confidence 99999999999988666666665443 58999999999998764 3344444332211 112577
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.|||.+|+|+.+.++||.+.+
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHhcC
Confidence 899999999999999999864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=1e-27 Score=166.72 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=111.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+|+++|++|+|||||++++..... ...+.+|....+ ..+..++ ..+++|||||++.+...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976422 122333333222 2344444 6788999999999998888899999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh------CCC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI------GSP 153 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 153 (197)
++|+|+++.+++... ..|+..+... . .+.|+++++||+|+... ...++...+.... ...
T Consensus 78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence 999999999888887 4454444332 2 58999999999998653 2334444433321 123
Q ss_pred eEEEeccCCCCCHHHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
+++++||++|.|++++++||.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 7999999999999999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=8.3e-28 Score=166.09 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=112.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|++|||||||++++..+.+... .+|....+ ..+.. +..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887543 44543222 22222 3447899999999999888888889999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH------HHHhCCCeEEEecc
Q 029215 88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL------RKLIGSPAYIECSS 160 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa 160 (197)
+++.++......+...+.... .+.|+++|+||+|+.... ..++.... ....+. +++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~Sa 144 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPCSA 144 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence 999988888333344443322 589999999999985421 12222211 111223 6889999
Q ss_pred CCCCCHHHHHHHHHH
Q 029215 161 KTQQNVKAVFDAAIK 175 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~ 175 (197)
++|.|++++|++|.+
T Consensus 145 ~~~~gv~~~~~~i~~ 159 (160)
T cd04156 145 VTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCCChHHHHHHHhc
Confidence 999999999999864
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.2e-27 Score=166.72 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=116.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++.++.+.. +.+|.... ...+...+ +.+.+||+||++.+...|..+++++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 456999999999999999999999876542 33443222 22333444 678899999999998899999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----------hC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----------IG 151 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 151 (197)
|+|+++++++......+...+.... .+.|+++|+||+|+... ++.+++...... .+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence 9999999998887444444443322 58999999999998643 333333332211 12
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...++++||++|.|++++++||.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2358899999999999999999865
No 122
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-29 Score=169.94 Aligned_cols=163 Identities=33% Similarity=0.515 Sum_probs=148.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.-+|++|+|..++||||++++++.+.|...+..++...+ ...+.+.++.+++.+||++|+++|+.+...+++.|.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 469999999999999999999999999999999886544 4456667777888899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
||+-+|+.||+.. ..|...+......+|.++|-||+|+.++.. +..+++..+++.+.. .++.+|++..
T Consensus 99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked 166 (246)
T KOG4252|consen 99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED 166 (246)
T ss_pred EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence 9999999999998 899999999889999999999999998776 889999999999997 8999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029215 164 QNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (197)
.|+..+|..+++.+.+
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999987754
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=7.7e-27 Score=160.94 Aligned_cols=151 Identities=21% Similarity=0.292 Sum_probs=113.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
||+++|.+|||||||++++..+.+ ..+.++..... ..+...+ +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 33444443222 2233343 6788999999999998999899999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH----hCCCeEEEeccC
Q 029215 88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAYIECSSK 161 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (197)
++++++... ..|+..+.... .+.|+++++||+|+.... ..++..+.... ....+++++||+
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd00878 77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV 143 (158)
T ss_pred CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence 999999988 55544443332 589999999999987542 22333333221 122379999999
Q ss_pred CCCCHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIK 175 (197)
Q Consensus 162 ~~~~i~~~~~~i~~ 175 (197)
+|.|++++|++|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=5.8e-27 Score=174.45 Aligned_cols=147 Identities=20% Similarity=0.314 Sum_probs=118.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-------------CeEEEEEEEEcCCcccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~ 69 (197)
...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.++||||+|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3569999999999999999999999999888888885443 3444443 3568899999999999999
Q ss_pred cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCccCCcccccCCCCCc
Q 029215 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDKQFFIDHPGAV 136 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 136 (197)
++..++++++++|+|||++++.++..+ ..|+..+.... .++|++||+||+|+..... .....
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~s 173 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGSS 173 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----ccccc
Confidence 999999999999999999999999999 89998887652 2589999999999965321 00011
Q ss_pred cccHHHHHHHHHHhCCCeE
Q 029215 137 PITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (197)
.+..++++++++..++.+.
T Consensus 174 ~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 174 GNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred cccHHHHHHHHHHcCCCcc
Confidence 2467899999999886543
No 125
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.4e-26 Score=161.87 Aligned_cols=141 Identities=31% Similarity=0.508 Sum_probs=121.5
Q ss_pred CCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhh
Q 029215 29 NTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHY 107 (197)
Q Consensus 29 ~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (197)
+.|.+.+.+|.+ +.+...+.+++..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 457778888886 44456678888899999999999999999999999999999999999999999998 7888777554
Q ss_pred C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 108 A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 108 ~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
. ++.|+++|+||+|+..... +..+++..+++.++. .++++||++|.|++++|++|++.+....
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4 6899999999999975433 678888899988887 8999999999999999999999986644
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=3.8e-26 Score=159.01 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=106.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------CCCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------SYRG 77 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------~~~~ 77 (197)
+|+++|.+|+|||||+++|.+..+.. .+..++.......+... .+.+++|||||+......... ....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999877632 22222222222222222 378889999998532111010 1123
Q ss_pred CcEEEEEEeCCCHhHH--HHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 78 ADVFILAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+|++++|+|+++..++ ... ..|+..+.....+.|+++|+||+|+..... +. +..++....+. ++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~~ 145 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-EV 145 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-ce
Confidence 6899999999987653 444 567777765556899999999999965432 11 24455544444 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+++||++|.|++++|+++.+.++
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred EEEEecccCCHHHHHHHHHHHhC
Confidence 99999999999999999988763
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=6.1e-26 Score=156.09 Aligned_cols=151 Identities=24% Similarity=0.330 Sum_probs=114.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 88 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (197)
|+++|++|+|||||++++.+..+...+.++....+. .+...+ +.+.+||+||++.+...+..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 789999999999999999999888877777654433 233333 77899999999999988889999999999999999
Q ss_pred CHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEEEeccCC
Q 029215 89 SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYIECSSKT 162 (197)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~ 162 (197)
+..++......+...+.... .+.|+++|+||+|+..... ..+..... .... .+++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 145 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDRE-VSCYSISCKE 145 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCc-eEEEEEEecc
Confidence 99888877333433333322 5889999999999865321 11111111 1122 3789999999
Q ss_pred CCCHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIK 175 (197)
Q Consensus 163 ~~~i~~~~~~i~~ 175 (197)
|.|+++++++|++
T Consensus 146 ~~gi~~l~~~l~~ 158 (159)
T cd04159 146 KTNIDIVLDWLIK 158 (159)
T ss_pred CCChHHHHHHHhh
Confidence 9999999999975
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=3.2e-26 Score=160.99 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=111.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-------CCCCCCCce------eece-e--EEEEE---CCeEEEEEEEEcCCccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF-S--ANVVV---DGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~t~------~~~~-~--~~~~~---~~~~~~l~i~D~~G~~~~~ 68 (197)
+|+++|.+++|||||+++|.... +...+.++. +..+ . ....+ ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 111121211 0011 1 11222 5567889999999999999
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..+..+++.+|++++|+|+++..++... ..|.... . .++|+++|+||+|+.+.. ..+...++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~ 145 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED 145 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence 8888889999999999999987666655 4443322 2 278999999999985421 1223345566
Q ss_pred HhCCC--eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 149 LIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 149 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
.++.. +++++||++|.|++++|+++.+.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 66652 48999999999999999999987643
No 129
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=1.3e-25 Score=148.43 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=125.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+++.++|+++|..|+||||++++|.+.. .+...||.+..+ .....++ +.+++||.+||..+++.|++|++..|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3468999999999999999999998755 334444443222 2333444 78899999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCcccc-HHHHHHHHHHhCCCeEEEecc
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIT-TAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+|+|.+|+-.+++....+-..+.... .+.|+++++||.|+...-. ...+. .-+...+++...+ +.+-||+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~ 160 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSA 160 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEec
Confidence 99999999999888566655555443 6899999999999975421 00011 0122344455666 8999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
.+|+++.+-++|+.+.+..
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.1e-25 Score=157.48 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=112.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|++|+|||||++++.+..+. .+.++.+.. ...+...+ ..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 34799999999999999999999987553 233443322 12334455 567899999998888888888899999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-------CeE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 155 (197)
|+|+++..++......+...+.... .+.|+++++||+|+.... ..+ .+.+..+. .++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence 9999999888877344444443322 479999999999986532 111 22222222 146
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 029215 156 IECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~ 175 (197)
+++||++|.|++++|+||.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 79999999999999999975
No 131
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=150.64 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=129.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.....+|+++|-.++||||++.+|..+++... .||.+..... +.+. .+++++||.+||+.++.+|++++++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 45679999999999999999999998887555 6777555443 2333 488999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh---CCC-eEEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI---GSP-AYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ 157 (197)
||+|.+|++.+.+...++...+.... .+.|+++.+||.|+... .+..++.+..... +.. .+..
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq~ 157 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQS 157 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEee
Confidence 99999999999999888887777765 68999999999999875 3333333322222 221 3456
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++|.+|+|+.+.++|+.+.+..+
T Consensus 158 ~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 158 TCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccccccHHHHHHHHHHHHhcc
Confidence 99999999999999999987654
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=7.8e-25 Score=150.32 Aligned_cols=157 Identities=36% Similarity=0.511 Sum_probs=120.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|.+|+|||||++++....+...+.++.. ......+..++..+.+.+||+||+..+..++...+.+++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998887666655553 33344466677668899999999999888888888889999999
Q ss_pred EeCCCH-hHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|.... .++......|...+..... +.|+++++||+|+.... . ...........+..+++++||++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~-~~~~~~~~~~~~~~~~~~~sa~~ 148 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------L-KTHVAFLFAKLNGEPIIPLSAET 148 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------h-hHHHHHHHhhccCCceEEeecCC
Confidence 999877 6666654466666655554 89999999999996532 1 22333333444445899999999
Q ss_pred CCCHHHHHHHHH
Q 029215 163 QQNVKAVFDAAI 174 (197)
Q Consensus 163 ~~~i~~~~~~i~ 174 (197)
+.|+.++|++|.
T Consensus 149 ~~gv~~~~~~l~ 160 (161)
T TIGR00231 149 GKNIDSAFKIVE 160 (161)
T ss_pred CCCHHHHHHHhh
Confidence 999999999863
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=3e-25 Score=154.72 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=108.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc----cccccCC---CCCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~~~~~ 79 (197)
+|+++|.+|+|||||+++|.+.... ..+..++.......+...+. ..+++|||||+... ..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999865431 12222222222222333332 46789999997422 1222222 34699
Q ss_pred EEEEEEeCCCH-hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCe
Q 029215 80 VFILAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPA 154 (197)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (197)
++++|+|++++ ++++.. ..|.+.+.... .+.|+++|+||+|+.+... ..+....+.... +. +
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~ 147 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGK-P 147 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCC-C
Confidence 99999999999 788877 77877776654 3789999999999965432 233444455553 44 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHH
Q 029215 155 YIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++++||+++.|++++|+++.+.
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999999875
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=4.3e-25 Score=167.87 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=118.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~~ 78 (197)
-.|+++|.|++|||||+++++.... ..+++.|+.......+.+.+ ...+.+||+||..+-. .+ +..+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4689999999999999999987542 34556666544444454422 2457799999974311 12 23356679
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 79 DVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++++|+|+++.+++++. ..|...+..+. .+.|+++|+||+|+.+... +..+..+.+....+. ++
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV 305 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence 999999999988778877 78888887764 3789999999999965432 233344445555555 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+++||++++|+++++++|.+.+...
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1e-24 Score=158.13 Aligned_cols=178 Identities=34% Similarity=0.546 Sum_probs=137.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.+||+++|++|+|||||+++|..+.+...+.++....+... ....+..+.+.+|||+|+++++.++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988888876555443 43444478899999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCC--ccccHHHHHHHHHHh--CCCeEEEec
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGA--VPITTAQGEELRKLI--GSPAYIECS 159 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~S 159 (197)
||.++..++.+....|...+.... .+.|+++++||+|+............. +.............. ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999998787777799999998887 479999999999998764211000000 112222222222222 232489999
Q ss_pred cC--CCCCHHHHHHHHHHHHcCCchh
Q 029215 160 SK--TQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 160 a~--~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
++ .+.++.++|..++..+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99 9999999999999998765433
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.1e-25 Score=152.56 Aligned_cols=135 Identities=25% Similarity=0.278 Sum_probs=100.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc-----cccccccCCCCCCcEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI 82 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~~~~i 82 (197)
||+++|.+|||||||+++|.+..+. +.+|.. +.... .+|||||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999877542 223321 11222 589999973 2333333 478999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||++++.++... .|...+ ..|+++|+||+|+.+.. ...+++.++++..+..+++++||++
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence 99999999887543 444332 34999999999986422 3456677777777765899999999
Q ss_pred CCCHHHHHHHHH
Q 029215 163 QQNVKAVFDAAI 174 (197)
Q Consensus 163 ~~~i~~~~~~i~ 174 (197)
|.|++++|+++.
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1e-24 Score=150.99 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=100.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC---CCCCCCCCc-eeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.|+++|.+++|||||+++|.+. .+...+.++ +.......+...+ ...+++|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999863 232222222 2111122333331 2578899999999887666667889999999
Q ss_pred EEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh--CCCeEEEe
Q 029215 84 AFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI--GSPAYIEC 158 (197)
Q Consensus 84 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (197)
|+|+++ .++.... ..+... ...|+++++||+|+..... ......+..+..+.. ...+++++
T Consensus 81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 999987 3333322 122222 1249999999999965321 001223334444332 22389999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 029215 159 SSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~ 175 (197)
||+++.|++++++.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998864
No 138
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.7e-24 Score=161.37 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=112.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-c-------cccCCCCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG 77 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~~ 77 (197)
+|+++|.+|+|||||+|+|.+..+. .+...|+...........+ ..+.+|||||..... . .....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999987642 3444555444443333344 457899999975431 1 12345688
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|+++..+.. ..+...+... +.|+++|+||+|+.+.. ...+....+....+..++++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence 99999999999876654 3444555544 79999999999996432 22334455555555557899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+||++|.|++++++++.+.+...+
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999886544
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.1e-24 Score=156.24 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=107.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------cccccC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~ 73 (197)
+..++|+|+|++|||||||++++.+..+.. ....++.......+...+. ..+.+|||||.... ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 345899999999999999999999876422 2222222222233334332 36779999997321 1111 1
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... . .......+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~ 180 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP 180 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC
Confidence 25679999999999998887766 56666665543 4789999999999965432 1 133333444
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
+++++||+++.|+++++++|.+.+
T Consensus 181 -~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 -DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 899999999999999999998753
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=2.7e-24 Score=164.42 Aligned_cols=161 Identities=15% Similarity=0.239 Sum_probs=112.9
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCccc-cccccc------
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP------ 72 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~------ 72 (197)
+..+.++|+++|.+|||||||+++|.+..+.. +...++.......+..++ ..+.||||||+.. +..+..
T Consensus 48 ~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 48 SNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 44567899999999999999999999877632 223333444444555666 4578999999853 222211
Q ss_pred -CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
..+.++|++++|+|.++. +......|+..+... +.|.++|+||+|+... ...++.+.....+
T Consensus 126 ~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcC
Confidence 236789999999997653 334434566666554 6788999999998532 1234445554443
Q ss_pred -CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 152 -SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..+++++||++|.|++++|+++.+.+...+
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 347899999999999999999999886543
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.8e-24 Score=149.53 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=106.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.|+++|.+|+|||||+++|..+.+.....++..... ...+... +....+.+|||||++.+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998877554333332222 1222222 13467889999999988888888888999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH----HhC-CCeEEEecc
Q 029215 86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIG-SPAYIECSS 160 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~Sa 160 (197)
|+++....+.. ..+..+... +.|+++|+||+|+..... .........+.. ..+ ..+++++||
T Consensus 82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence 99885322222 122233333 789999999999864321 001111111111 111 237899999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 029215 161 KTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~ 178 (197)
++|.|++++++++.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999988654
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.2e-23 Score=144.82 Aligned_cols=147 Identities=15% Similarity=0.239 Sum_probs=106.6
Q ss_pred EECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CCCcEE
Q 029215 11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~ 81 (197)
|+|.+|+|||||++++.+..+. ..+.+++.......+..++ ..+.+|||||+..+... +..++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999887533 3334444444445566665 46789999999876642 34444 489999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
++|+|+++.+... .+...+... ++|+++|+||+|+..... +. .....++...+. +++++||.
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~ 140 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR 140 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence 9999998865432 233333334 799999999999975432 22 234566677776 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIKVV 177 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (197)
++.|++++++++.+.+
T Consensus 141 ~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 141 KGEGIDELKDAIAELA 156 (158)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.4e-23 Score=142.86 Aligned_cols=152 Identities=41% Similarity=0.757 Sum_probs=114.8
Q ss_pred EECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC
Q 029215 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (197)
Q Consensus 11 v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (197)
++|++|+|||||++++..... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4455555544445555566667889999999998887777778889999999999999
Q ss_pred HhHHHHHHHHH--HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHhCCCeEEEeccCCCCCH
Q 029215 90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 90 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
+.++... ..| .........+.|+++++||+|+..... ..... ......... .+++++|+..+.|+
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence 9988887 444 222233336899999999999976532 11111 233333344 49999999999999
Q ss_pred HHHHHHHH
Q 029215 167 KAVFDAAI 174 (197)
Q Consensus 167 ~~~~~~i~ 174 (197)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999986
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=7.8e-24 Score=145.52 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=104.8
Q ss_pred EEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCCCCCCc
Q 029215 10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD 79 (197)
Q Consensus 10 ~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~~ 79 (197)
+++|.+|+|||||++++.... +.....+++...........+ ..+.+|||||+..+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764 334445555444444555555 5678999999887543 2234567899
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
++++|+|+.+..+.... .+...+... +.|+++|+||+|+.+... . .......+..+++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence 99999999876544432 333444444 699999999999965432 1 2223345555789999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 029215 160 SKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~ 177 (197)
++++.|++++++++++.+
T Consensus 140 a~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 140 AEHGRGIGDLLDAILELL 157 (157)
T ss_pred cccCCCHHHHHHHHHhhC
Confidence 999999999999998753
No 145
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.91 E-value=9.7e-23 Score=133.36 Aligned_cols=168 Identities=24% Similarity=0.337 Sum_probs=140.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccc-cccccCCCCCCcE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV 80 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~ 80 (197)
+..|++|+|..++|||++++++..+.. ..++.+|+++.|...+..+ +..-.+.++||.|...+ ..+-+++++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 468999999999999999999886654 3456778888887766654 44567889999998877 4566788899999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++||+..|++||+.+ ..+-..|.... ..+|+++++||+|+.+... ++.+-++.|++.-.. ..+++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV 155 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV 155 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence 9999999999999988 66666666544 4799999999999987765 899999999999887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
++.+...+-+.|..+...+.++..+.
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999988776444
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=2.3e-23 Score=158.26 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=113.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~ 77 (197)
.-.|+++|.+++|||||++++..... ..+++.|+.......+.+.+ ...+++||+||..+.. .+ +..+++.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 35789999999999999999997542 34455555433333444443 2567899999975322 12 2233567
Q ss_pred CcEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 78 ADVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
++++++|+|+++. +.+++. ..|...+..+. .+.|+++|+||+|+.+.. ...+..+.+++..+
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG 303 (329)
T ss_pred hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence 9999999999986 566666 67766666553 478999999999996542 22344556666666
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
. +++++||+++.|++++++++.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 899999999999999999998765
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.4e-23 Score=167.34 Aligned_cols=160 Identities=20% Similarity=0.209 Sum_probs=114.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------ccccc-
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~- 71 (197)
..++|+++|.+++|||||+++|++..+ .....+++.+.....+..++.. +.+|||||..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998764 4555666666666666677754 46999999632 22221
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
..+++.+|++++|+|++++.++++. .++..+... +.|+++|+||+|+.+... ......+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence 2346789999999999999888776 344555444 899999999999965321 0011112222112223
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
..+++++||++|.|++++|+.+.+.+.
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999998774
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.1e-23 Score=142.64 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=106.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~ 77 (197)
++|+++|.|+||||||+|+|++... ..++++++.+.....+...+ ..+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999998763 45677777666677777777 55669999996544322 12222 57
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
.|++++|+|+++.+.-. .+...+.+. ++|+++++||+|+..... .. .....+.+.++. |+++
T Consensus 79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~ 140 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP 140 (156)
T ss_dssp SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence 99999999998754322 334445555 899999999999976543 22 246678888898 9999
Q ss_pred eccCCCCCHHHHHHHH
Q 029215 158 CSSKTQQNVKAVFDAA 173 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i 173 (197)
+||+++.|++++++.|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999999875
No 149
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=2.3e-24 Score=139.98 Aligned_cols=155 Identities=22% Similarity=0.317 Sum_probs=127.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
...+.++|-.++|||||++.+..+.+.....||.+.... .+....+.+.+||.||+.+|+++|..+.+.+++++||+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 467899999999999999999998888877777655433 35556688999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-------CeEEE
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-------PAYIE 157 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 157 (197)
|+.+++.+...+.++...+.... .++|++++|||.|+..... . .++...+|. .-+|.
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS 161 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence 99999998888888888887766 7999999999999987632 2 122233321 24688
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+|+++..+++-+.+|+++.-.
T Consensus 162 iScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhh
Confidence 999999999999999998643
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=5.1e-24 Score=152.49 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=102.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC-----------cccccccccC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~ 73 (197)
..++|+++|.+|+|||||+++|.+..+.....++.... ...+... .+++||||| ++.++..+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 46899999999999999999999877644333332211 1222222 478999999 3455544444
Q ss_pred CC----CCCcEEEEEEeCCCHhHHHH---------HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH
Q 029215 74 SY----RGADVFILAFSLISKASYEN---------VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT 140 (197)
Q Consensus 74 ~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 140 (197)
++ ..++++++|+|.++...+.. ....+...+... ++|+++|+||+|+.+.. .
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-------------~ 147 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-------------D 147 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-------------H
Confidence 43 34678888998865322100 001223333333 89999999999985431 2
Q ss_pred HHHHHHHHHhCC--------CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 141 AQGEELRKLIGS--------PAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 141 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+...++++.++. .+++++||++| |+++++++|.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 344555555553 15799999999 99999999999875433
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=3.5e-23 Score=162.81 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=114.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 74 (197)
..++|+++|++|+|||||+|+|++.. +...+++|+.+.....+.+++ +.+++|||||+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 46899999999999999999999864 456677777776677777777 45679999998655432 2346
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++++|++++|+|++++.++... |+..+... +.|+++|+||+|+... +...+++..+. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 7889999999999998776643 55444433 7899999999998532 11234455665 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++++||++ .|++++|+.+.+.+.+
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHH
Confidence 89999998 5899999888887654
No 152
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.6e-23 Score=137.71 Aligned_cols=114 Identities=33% Similarity=0.557 Sum_probs=86.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
||+|+|++|||||||+++|.+..+.. ...++....+ ............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999987751 1122222222 23445566666699999999998888777778899999999
Q ss_pred EeCCCHhHHHHHHHH--HHHHHhhhCCCCCEEEEeecCC
Q 029215 85 FSLISKASYENVAKK--WIPELRHYAPGVPIILVGTKLD 121 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D 121 (197)
||+++++++..+... |+..+....+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999887333 5677776667899999999998
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=3.6e-23 Score=158.54 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=108.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~ 74 (197)
..++|+++|.+|+|||||+|+|++..+. .+..+++.+.....+.+.+. ..+.+|||+|..+ |...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999987542 34444554555555666332 4678999999722 22222 23
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+.++|++++|+|++++.+.... ..|...+.... .+.|+++|+||+|+.+... ..... . +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---------------v~~~~-~-~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---------------IERLE-E-GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh---------------HHHHH-h-CCC
Confidence 6789999999999998877765 55655555543 4789999999999854221 11111 1 223
Q ss_pred eEEEeccCCCCCHHHHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
+++++||++|.|+++++++|.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=2.8e-23 Score=145.42 Aligned_cols=152 Identities=24% Similarity=0.283 Sum_probs=103.2
Q ss_pred EECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcccc----cccc---cCCCCCCcEE
Q 029215 11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~----~~~~---~~~~~~~~~~ 81 (197)
++|++|||||||+++|.+... ...+.+++.......+... + ..+.+|||||.... ..++ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 3344444433333344455 4 56789999997432 2222 2235679999
Q ss_pred EEEEeCCCH------hHHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 82 ILAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
++|+|+++. .++.+. ..|...+.... .+.|+++|+||+|+..... ..........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence 999999988 466665 55555554332 3799999999999965432 2221122333
Q ss_pred HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...+. +++++||+++.|++++++++.+.
T Consensus 148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 33343 79999999999999999998764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.6e-23 Score=165.83 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=110.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~ 75 (197)
..+|+|+|.+|||||||+++|.+... .....+++.+.........+. .+.+|||||++. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 46899999999999999999998753 234444444555555666664 567999999763 222334567
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++|++++|||++++.++.. ..+...+... +.|+++|+||+|+.... .+....+ ..+....
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~~ 176 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGEP 176 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCCe
Confidence 88999999999998866543 3455555554 89999999999985421 1111122 2343345
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++||++|.|++++|+++++.+..
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 799999999999999999998865
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=6.8e-23 Score=145.87 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=99.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh--CCCCCCCC------------Cceee-ceeEEEEECCeEEEEEEEEcCCcccccccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~--~~~~~~~~------------~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 71 (197)
-+|+++|.+++|||||+++|+. +.+...+. .+.+. .......+....+.+++|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 55543321 11111 111222233344788999999999999888
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-- 149 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (197)
..+++++|++++|+|+++... ... ..++..+... ++|+++|+||+|+..... ....+++.++...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~ 149 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG 149 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence 889999999999999987532 222 3333333333 789999999999964321 0123444444422
Q ss_pred -----hCCCeEEEeccCCCCCHHH
Q 029215 150 -----IGSPAYIECSSKTQQNVKA 168 (197)
Q Consensus 150 -----~~~~~~~~~Sa~~~~~i~~ 168 (197)
.+. +++++||++|.|+.+
T Consensus 150 ~~~~~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 150 ATEEQLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred CccccCcc-CEEEeehhccccccc
Confidence 244 899999999977633
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=9.2e-23 Score=140.12 Aligned_cols=145 Identities=26% Similarity=0.327 Sum_probs=105.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~ 76 (197)
++|+++|++|+|||||++++..... .....+++.......+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 5899999999999999999998753 23344444343344444554 56789999998655432 123567
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|++++.+.... ..+.. ..+.|+++|+||+|+.+... . .....+ .+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~-~~~~ 135 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAG-KPII 135 (157)
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCC-CceE
Confidence 89999999999987766655 33322 33799999999999976432 1 223333 4899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
++||+++.|+++++++|.+.+
T Consensus 136 ~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 999999999999999998754
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=3.5e-23 Score=146.54 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=109.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-----------------eeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (197)
+|+++|.+|+|||||++++...........+. .......+... ...+.+|||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999998876543321111 11111122223 367889999999888888
Q ss_pred ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 150 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
+..++..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+..... .......+++..+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 146 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI 146 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence 88888899999999999886544432 34444444 3899999999999975221 001222333333332
Q ss_pred C-------------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 151 G-------------SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 151 ~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+ ..+++++||++|.|++++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 348999999999999999999999874
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.4e-22 Score=160.52 Aligned_cols=157 Identities=23% Similarity=0.248 Sum_probs=113.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-----------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 71 (197)
..++++++|.+++|||||+++|++... .....+++.+.....+..++. .+.+|||||+.......
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999997653 455566666555556666664 56799999986554332
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH-
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL- 149 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 149 (197)
..+++.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+.+.. ...++.. .+...
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL 313 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence 2356789999999999988776665 444444444 79999999999997221 1122222 22222
Q ss_pred --hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 150 --IGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 150 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
.+..+++++||++|.|++++|+++.+.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23458999999999999999999988764
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=4.7e-23 Score=162.88 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=112.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------ccCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 74 (197)
..++|+++|.+|+|||||+|+|.+... ..+..+++.+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 358999999999999999999998653 45666666666666777777 46789999998754432 1235
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+.++|++++|+|++++.++... ..|.. ..+.|+++|+||+|+.+... .. ...+. +
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-P 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-c
Confidence 7789999999999998777654 44433 34789999999999965322 10 22333 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++++||++|.|++++++++.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998753
No 161
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=8.2e-23 Score=141.54 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=104.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC--CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~ 75 (197)
..+|+++|++|+|||||++++.+...... ...+......... ......+.+|||||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999987654221 1122222222222 22236788999999764332 123346
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
..+|++++|+|++++.+ .....+...+... +.|+++|+||+|+..... ...+....+....+..++
T Consensus 81 ~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~ 146 (168)
T cd04163 81 KDVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI 146 (168)
T ss_pred HhCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence 78999999999998722 2213444445444 689999999999974322 233344455555545589
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 029215 156 IECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
+++|++++.|+++++++|.+.
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 147 FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEEeccCCChHHHHHHHHhh
Confidence 999999999999999999765
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=2.4e-22 Score=162.58 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=109.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+..+|+++|++++|||||+++|....+...+.+.+. ......+..++. ..+.||||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 568999999999999999999998877655443332 222223334332 267899999999999998888999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-------hC-CCeE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------IG-SPAY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~ 155 (197)
|+|+++....+.. ..+ ...... ++|+++++||+|+... ..+...+.... ++ ..++
T Consensus 165 VVda~dgv~~qT~-e~i-~~~~~~--~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAI-SHAKAA--NVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred EEECCCCCCHhHH-HHH-HHHHHc--CCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence 9999875433332 222 222323 8999999999998642 12223332222 22 2378
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 029215 156 IECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
+++||++|.|++++++++...
T Consensus 228 v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred EEEECCCCCChHHHHHhhhhh
Confidence 999999999999999998753
No 163
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2.5e-22 Score=151.52 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=111.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc--------cccCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~ 74 (197)
+.-.|+++|.+|||||||+|+|++..+. .....|+...........+ ..+.+|||||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999999987652 2233333333333333333 6788999999754321 22335
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+.++|++++|+|+++... .....+...+... +.|+++|+||+|+..... ...+....+.+..+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence 678999999999988322 1213444444433 789999999999974321 23445556666566668
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++++||+++.|++++++++.+.+...+
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999886543
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=9.4e-22 Score=137.17 Aligned_cols=155 Identities=23% Similarity=0.283 Sum_probs=104.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------cc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~ 72 (197)
.++|+++|.+|+|||||++++++... .....++........+...+. .+.+|||||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 58999999999999999999988653 233333433333444555554 4669999997543211 11
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHhC
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLIG 151 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (197)
..+..+|++++|+|++++.+.... .+...+... +.|+++++||+|+..... ...+. ...+.+..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~ 145 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence 245689999999999988765543 333343333 789999999999976421 11222 222223332
Q ss_pred ---CCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 152 ---SPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 152 ---~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
..+++++||+++.|++++++++.+.
T Consensus 146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 3489999999999999999998764
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.2e-22 Score=163.47 Aligned_cols=160 Identities=20% Similarity=0.217 Sum_probs=115.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC-------CCCCCCCce------eece---eEEEEE---CCeEEEEEEEEcCCccc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQED 66 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~~~ 66 (197)
.-+++++|+.++|||||+++|+... +...+..+. +..+ ...+.+ ++..+.++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111110 1111 111222 45668999999999999
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|...+..+++.+|++++|+|++++.+.+.. ..|...+. . ++|+++|+||+|+.... ......++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~-~--~ipiIiViNKiDl~~~~------------~~~~~~el 146 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE-N--DLEIIPVINKIDLPSAD------------PERVKKEI 146 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH-c--CCCEEEEEECcCCCccC------------HHHHHHHH
Confidence 998888899999999999999997766665 44443332 2 78999999999986421 12233455
Q ss_pred HHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 147 RKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 147 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+.++.. .++++||++|.|++++|++|.+.+..+.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 5555542 4899999999999999999999887654
No 166
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=6.9e-22 Score=153.94 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=112.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----ccc---cCCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLR---PLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~---~~~~~~~ 78 (197)
-.|+++|.|+||||||+++++.... ..+++.|+.......+.+.+ ...+.+||+||..... .+. ..+++.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3799999999999999999997542 23455555433333344431 2567899999974321 122 2235679
Q ss_pred cEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++++|+|+++. +.+++. ..|...+..+. .+.|+++|+||+|+... .+....+.+.++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~ 302 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP 302 (424)
T ss_pred CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC
Confidence 999999999864 556665 66777776654 37899999999998321 2345566666664
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+++++||+++.|++++++++.+.+...+
T Consensus 303 -~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 303 -KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred -cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999998875543
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.5e-22 Score=138.26 Aligned_cols=142 Identities=20% Similarity=0.154 Sum_probs=99.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc----cCCCCCCcEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~~~~i~ 83 (197)
+|+++|.+++|||||++++.+..... ..+ ..+.+... .+|||||.......+ ...+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987543111 111 11222222 269999973222111 123678999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-CeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS-PAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (197)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+ ...+...+++...+. .|++++||++
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 999998876532 233222 23689999999999854 234566677777765 3899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.|++++|+++.+.+...
T Consensus 132 g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ccCHHHHHHHHHHhchhh
Confidence 999999999998877544
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=1.8e-22 Score=143.52 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=100.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC----CCCCC----CCCceeeceeEEEEE------------CCeEEEEEEEEcCCccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN----TFPTD----YVPTVFDNFSANVVV------------DGSTVNLGLWDTAGQED 66 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~----~~~~~----~~~t~~~~~~~~~~~------------~~~~~~l~i~D~~G~~~ 66 (197)
++|+++|++++|||||+++|+.. .+... ..+++.......+.+ .+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 11111 112221111111222 23357888999999865
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
+........+.+|++++|+|+++....... ..+. ..... +.|+++++||+|+..... .....++.++.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~ 148 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK 148 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence 433322335678999999999886544433 2221 12222 679999999999864321 00112222221
Q ss_pred -HHH-----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 147 -RKL-----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 147 -~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
... ....+++++||++|.|++++++++.+.+..+
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 111 1223899999999999999999999887654
No 169
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.9e-22 Score=127.87 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=124.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+.+|-.++||||++..|..+.. ....||.+..+. .+ ...++.+++||.+|++..+.+|++++....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tV--tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EE--EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3578999999999999999999987664 333445443332 22 3334788999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (197)
|+|..+++..++.+.++...+.... .+.|++|.+||.|+.... ...+++.+.. ...+ -+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W-~vqp 157 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNW-YVQP 157 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCcc-Eeec
Confidence 9999999999999889988887765 689999999999998764 3334443322 2223 3567
Q ss_pred eccCCCCCHHHHHHHHHHHHc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++|.+|+|+.+-|.|+.+.+.
T Consensus 158 ~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccccchhHHHHHHHHHhhcc
Confidence 999999999999999988764
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.8e-22 Score=158.27 Aligned_cols=150 Identities=22% Similarity=0.210 Sum_probs=108.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--------cccccCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~ 76 (197)
.+|+++|.+|||||||+++|.+... .....+++.+.......+++ ..+++|||||++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999997653 45555555555566666777 67889999998761 122344567
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+... .....++ ...+...++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~--------------~~~~~~~-~~lg~~~~~ 140 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE--------------EADAYEF-YSLGLGEPY 140 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc--------------hhhHHHH-HhcCCCCCE
Confidence 89999999999886443322 223334444 7999999999996431 1122222 345654589
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
++||++|.|++++++++.+..
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 999999999999999998844
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3.1e-22 Score=158.60 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=111.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCCCCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG 77 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~ 77 (197)
+|+++|.+|||||||+|+|.+... ..++.+++.+.....+...+. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 445556665666666666664 577999999632 22334556788
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|+.++.+..+. .+...++.. +.|+++|+||+|+..... ...+ ...++..++++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--------------~~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--------------VAAE-FYSLGFGEPIP 139 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc--------------cHHH-HHhcCCCCeEE
Confidence 9999999999886444432 344445554 799999999999865321 1112 34566668999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+||++|.|+.++++++.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999888654
No 172
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.9e-23 Score=138.58 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=122.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhC---CCC----CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN---TFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL 73 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~---~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 73 (197)
|.++..+.++++|..++|||||+.++... .+. ....+|.+. ....+.+.+ ..+.|||..||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL-nig~i~v~~--~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL-NIGTIEVCN--APLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce-eecceeecc--ceeEEEEcCChHHHHHHHHH
Confidence 34566789999999999999999776532 221 112222222 233444454 56779999999999999999
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHH
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKL 149 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (197)
++..+|++|+++|+++++.|+.....+...+.... .+.|+++.+||.|+.+.. ...++... +..
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~ 156 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL 156 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence 99999999999999999999988566655554443 699999999999997652 23333322 333
Q ss_pred hC--CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 150 IG--SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 150 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.+ ..++.++||.+|+||++-..|+.+.+.++
T Consensus 157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 32 23678999999999999999999998876
No 173
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=1.3e-21 Score=138.58 Aligned_cols=162 Identities=22% Similarity=0.248 Sum_probs=109.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCC-------------------CCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
++..+|+++|+.++|||||+++|......... ...+.......+........++++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35789999999999999999999854321100 00001111122221233467889999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
..|.......+..+|++++|+|+.++..... ...+..+... ++|+++++||+|+...+. ....++..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHH
T ss_pred cceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHH
Confidence 9888777777889999999999987754443 3455556666 899999999999973211 01112222
Q ss_pred -HHHHHhC-----CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 145 -ELRKLIG-----SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 145 -~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
.+.+..+ ..|++++||.+|.|++++++.+.+.+.
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3434443 347999999999999999999998764
No 174
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.4e-21 Score=154.20 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=109.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----cc---ccCCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~ 77 (197)
...|+|+|.|++|||||+++|+.... ..+++.|+.......+...+ ..+++||+||..... .+ ...+++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 35799999999999999999987543 34556666554455555655 567899999963211 11 1224578
Q ss_pred CcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCccCCcccccCCCCCccccHH
Q 029215 78 ADVFILAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA 141 (197)
Q Consensus 78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (197)
++++++|+|+++. +.+.+. ..+...+..+. .+.|+++|+||+|+.+... ..+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e 304 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAE 304 (500)
T ss_pred cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHH
Confidence 9999999999853 233333 33433333322 3789999999999965322 122
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 142 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.........+. +++++||+++.|+++++.+|.+.+...+
T Consensus 305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 22333334465 8999999999999999999999876543
No 175
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=142.32 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=121.4
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc--------ccc
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLR 71 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~ 71 (197)
...+.--|+++|.|++|||||+|++++... ..+.+.|+.......+..++ ..+.|+||||...-. ...
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 345677899999999999999999998764 45556666777777776665 667799999954322 122
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+..+|+++||+|+++.....+ +..++.+... +.|+++++||+|...... ........+.....
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~ 145 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP 145 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence 345788999999999988544332 3445555553 789999999999877542 22344444445566
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+..++++||+.|.|++.+.+.+...+...+
T Consensus 146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 146 FKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 668899999999999999999999887654
No 176
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=7.3e-22 Score=141.38 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=79.1
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
..+.||||||++.|...+...+.++|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~-~l~~~~~~-~~~~iiivvNK~Dl~~~~~----- 154 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-E-HLAALEIM-GLKHIIIVQNKIDLVKEEQ----- 154 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-H-HHHHHHHc-CCCcEEEEEEchhccCHHH-----
Confidence 57889999999988777777788899999999998741 11111 2 22222222 1347999999999965321
Q ss_pred CCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 133 PGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.....++++++...+ ...+++++||++|.|++++|+++.+.+..++
T Consensus 155 ---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 155 ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred ---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 001123333443332 1237999999999999999999998887654
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=8.9e-22 Score=161.61 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=111.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee---eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
.+..+|+++|..++|||||+++|....+.....+... ..+.......+....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3567999999999999999999988766443332221 1122223333445788999999999999998888999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-------HHHhC-C
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-------RKLIG-S 152 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~ 152 (197)
+++|+|++++...+.. ..| ..+... ++|+++++||+|+.... .+.+.+. ...++ .
T Consensus 322 aILVVDA~dGv~~QT~-E~I-~~~k~~--~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAI-NYIQAA--NVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred EEEEEECcCCCChhhH-HHH-HHHHhc--CceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCC
Confidence 9999999886433333 222 223333 79999999999986531 1111111 22233 3
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.+++++||++|.|++++++++....
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhh
Confidence 4899999999999999999998764
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=2.1e-21 Score=152.09 Aligned_cols=156 Identities=20% Similarity=0.180 Sum_probs=107.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--ccccc------CCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~~ 77 (197)
.+|+++|.+|+|||||+|+|++..+. .+..+++.+.....+...+. ..+.+|||+|.... ..++. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986542 23344444444445555442 25679999997432 11221 23578
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+... ... . ....+...++
T Consensus 277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-------------~~~-~-~~~~~~~~~v 340 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-------------PRI-D-RDEENKPIRV 340 (426)
T ss_pred CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-------------HHH-H-HHhcCCCceE
Confidence 9999999999998877765 44444444433 3799999999999864211 001 1 1123442358
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++||++|.|++++++++.+.+..
T Consensus 341 ~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 341 WLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999998854
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.3e-21 Score=139.41 Aligned_cols=161 Identities=18% Similarity=0.125 Sum_probs=102.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc----------ccccccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~ 72 (197)
....++|+++|.+|+|||||++++.+..+.....++.+..........+ ..+.+|||||.. .+..+..
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3456899999999999999999999876444444443222211111112 568899999953 2222222
Q ss_pred CCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 73 LSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 73 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.++ ...+++++++|.+++.+.... .+...+... +.|+++++||+|+.+... .....+.+......
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence 233 345788899998876443322 222333333 789999999999865321 00112223333333
Q ss_pred hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 150 IGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
... +++++||+++.|++++++.|.+.+.
T Consensus 167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GDD-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 333 8899999999999999999987764
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=3.9e-22 Score=142.64 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCC-cEEEEEEe
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS 86 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 86 (197)
+|+++|+++||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988766554443222222222123346788999999999988888888888 99999999
Q ss_pred CCCH-hHHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccCC
Q 029215 87 LISK-ASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDD 125 (197)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~ 125 (197)
+++. .++.+....+...+... .+++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 67777644544444332 258999999999998764
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=3.4e-21 Score=159.42 Aligned_cols=159 Identities=17% Similarity=0.228 Sum_probs=109.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+...|+++|+.++|||||+++|....+.....+.+. ......+.+++ ..++||||||++.|..++...+..+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678899999999999999999988776544333321 12123344455 56789999999999999888889999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH--HHHHHHHHhC-CCeEEEec
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA--QGEELRKLIG-SPAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~S 159 (197)
+|||++++...+.. ..| ...... ++|+++++||+|+..... ..+..+ +...++..++ ..+++++|
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~~--~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKAA--GVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHhc--CCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 99999885333322 222 223333 899999999999964211 001000 0011223333 24899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 029215 160 SKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~ 176 (197)
|++|.|++++|++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999999864
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=6.4e-22 Score=139.14 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=95.8
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECCeEEEEEEEEcCCccc----------cccc
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNRL 70 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~----------~~~~ 70 (197)
++...++|+++|.+|+|||||++++.+..+.....++...... ..+..++ .+.+|||||... +..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 4567899999999999999999999987643333333222111 1122232 578999999532 2222
Q ss_pred ccCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 71 RPLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 71 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
...+++ .++++++|+|++++-+..+. .+...+... +.|+++++||+|+..... .....+++++..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~l 158 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKAL 158 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHHH
Confidence 223333 46899999999876544443 333444444 799999999999964321 012234444454
Q ss_pred HHhCC-CeEEEeccCCCCCHH
Q 029215 148 KLIGS-PAYIECSSKTQQNVK 167 (197)
Q Consensus 148 ~~~~~-~~~~~~Sa~~~~~i~ 167 (197)
...+. .+++++||++|+|++
T Consensus 159 ~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 159 KKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhccCCCceEEEECCCCCCCC
Confidence 44432 279999999999974
No 183
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.5e-21 Score=148.63 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=113.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----c---ccCCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~ 78 (197)
-.|+++|.|+||||||+|+|+.... ...++.|+.......+...+. ..+.++||||...-.+ + ...+++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3689999999999999999987543 345566665555555555432 3577999999753211 1 12346789
Q ss_pred cEEEEEEeCC---CHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 79 DVFILAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 79 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++++|+|++ +.+.++.. ..|+..+..+. .+.|+++|+||+|+..... ..+....+.+..+.
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~ 306 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGW 306 (390)
T ss_pred CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCC
Confidence 9999999998 44555555 66766666654 3789999999999864321 23344455555443
Q ss_pred -CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 153 -PAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.+++++||+++.|+++++++|.+.+...
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2689999999999999999999988654
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2e-21 Score=161.60 Aligned_cols=157 Identities=22% Similarity=0.233 Sum_probs=113.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------cccc-c
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRL-R 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~-~ 71 (197)
..++|+++|.++||||||+++|++... ..++.+|+.+.+...+..++.. +.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998763 4566777766666666777754 45999999642 1111 1
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH-
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL- 149 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 149 (197)
...++.+|++++|+|++++.+.++. . +...+... ++|+++|+||+|+.+... .+... .+...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence 2346789999999999998877776 3 44444444 799999999999965321 11111 12222
Q ss_pred --hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 150 --IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 150 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
....+.+++||++|.|++++++.+.+.+..
T Consensus 591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 233477899999999999999999998765
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.4e-21 Score=152.20 Aligned_cols=160 Identities=20% Similarity=0.217 Sum_probs=110.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------c
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~ 71 (197)
..++|+++|.+++|||||++++++.. ......+++.+.....+..++ ..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999754 244555566555555555666 44569999996433221 1
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
..+++.+|++++|+|++++.+..+. .+...+... +.|+++++||+|+.+... .....++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--------~~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT--------MEEFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH--------HHHHHHHHHHhccccc
Confidence 2356789999999999998776654 444444444 799999999999964321 0001111111112223
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
..+++++||++|.|++++++.+.+...
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999887653
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=5.4e-21 Score=155.28 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=111.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC---CCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+.|+++|++++|||||+++|++. .+..++..++ .+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47899999999999999999863 2322222222 222222344555 67889999999999888778888999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC---CCeEEEe
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG---SPAYIEC 158 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (197)
+|+|++++...+.. ..+..+... ++| +++|+||+|+.+... .....+++..+....+ ..+++++
T Consensus 79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 99999984322222 222233333 778 999999999975431 0012345556665553 2489999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
||++|.|++++++++.+.+...
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHhC
Confidence 9999999999999998776543
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=6.1e-21 Score=155.22 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=114.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----C---------CCceeeceeEEEEE---CCeEEEEEEEEcC
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----Y---------VPTVFDNFSANVVV---DGSTVNLGLWDTA 62 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~i~D~~ 62 (197)
..++.-+++++|+.++|||||+.+|+.. .+... . .+.+.......+.+ ++..+.+++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 3445679999999999999999999753 22110 0 00000000111112 4556899999999
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
|+.+|...+..+++.+|++++|+|++++...+.. ..|.... .. +.|+++|+||+|+.... ....
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~~--~lpiIvViNKiDl~~a~------------~~~v 146 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-EN--DLEIIPVLNKIDLPAAD------------PERV 146 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-HC--CCCEEEEEECCCCCccc------------HHHH
Confidence 9999998888899999999999999987665554 4443322 22 78999999999986431 1222
Q ss_pred HHHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 143 GEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 143 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..++...++.. .++++||++|.|+++++++|.+.+..+.
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 23444445542 4899999999999999999999887654
No 188
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=4e-21 Score=155.25 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=104.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee----ce-eEEEE------------ECCeEEEEEEEEcCCcccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD----NF-SANVV------------VDGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~----~~-~~~~~------------~~~~~~~l~i~D~~G~~~~ 67 (197)
+..-|+++|.+++|||||+++|.+..+.....++... .+ ..... +......+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3456999999999999999999987765443332211 11 10000 0000113789999999999
Q ss_pred cccccCCCCCCcEEEEEEeCCCH---hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC-------CCCcc
Q 029215 68 NRLRPLSYRGADVFILAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH-------PGAVP 137 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-------~~~~~ 137 (197)
..++..+++.+|++++|+|+++. +++... ..+... ++|+++++||+|+.+........ .....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 99888888999999999999974 443332 233333 78999999999996421100000 00000
Q ss_pred c-------cHHHHHHHHH-------------HhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 138 I-------TTAQGEELRK-------------LIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 138 ~-------~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+ ......++.+ ..+..+++++||++|+|+++++.++.....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0 0000111111 123358999999999999999999876543
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=8.4e-21 Score=157.94 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=108.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc--------cccccCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~ 75 (197)
..+|+++|.++||||||+|+|++... .+..++++.+........++ ..+.+|||||.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999997653 34445555555444555556 46779999997632 12223456
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+.+|++++|+|+++.....+ ..|...+... +.|+++|+||+|+.... .....+. ..+....
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--------------~~~~~~~-~lg~~~~ 413 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE--------------YDAAEFW-KLGLGEP 413 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch--------------hhHHHHH-HcCCCCe
Confidence 88999999999987533222 3555566554 89999999999985421 1112222 2343356
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++||++|.|+.++|+++++.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 799999999999999999998865
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=6.8e-21 Score=145.89 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=118.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc--cc-------ccCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--RL-------RPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--~~-------~~~~~ 75 (197)
..|+++|-|+||||||+|||.+.. ..+++++++.+.......+.+.. +.++||+|.+... .+ ....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 679999999999999999999875 46888899988888888888854 7799999987433 11 23346
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+.||+++||+|...+-+..+. .+...++.. ++|+++|+||+|-.. .++...-...+|....
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~---------------~e~~~~efyslG~g~~ 142 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLK---------------AEELAYEFYSLGFGEP 142 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCch---------------hhhhHHHHHhcCCCCc
Confidence 789999999999886555543 555555544 799999999999742 2333333455677689
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+.+||..|.|+.++++++++.+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 99999999999999999999984
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=7.1e-21 Score=154.71 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=106.6
Q ss_pred CCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc------ccCCC--CCCcEEEE
Q 029215 13 GDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFIL 83 (197)
Q Consensus 13 G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~i~ 83 (197)
|.+|+|||||+|++.+... ..++++++.+.....+..++. .+++|||||++.+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 344555555555555666664 5679999999877653 22222 46899999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+|+++.+.. ..+...+.+. +.|+++|+||+|+.+... +. .+.+.+.+..+. +++++||++|
T Consensus 79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg 140 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG 140 (591)
T ss_pred EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence 9999875432 1222233333 899999999999965432 22 346778888887 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIKVV 177 (197)
Q Consensus 164 ~~i~~~~~~i~~~~ 177 (197)
.|++++++++.+.+
T Consensus 141 ~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 141 RGIERLKDAIRKAI 154 (591)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=9e-20 Score=132.89 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=102.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------cccCCCCCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~~ 79 (197)
+++++|++|+|||||+++|.+... ...+..++.......+...+ ..+++||+||+..... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999997652 33445555444455555666 5678999999754331 1234678999
Q ss_pred EEEEEEeCCCHhH-HHHHHHHHH-----------------------------------------HHHhhh----------
Q 029215 80 VFILAFSLISKAS-YENVAKKWI-----------------------------------------PELRHY---------- 107 (197)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~---------- 107 (197)
++++|+|+++++. .+.+ ...+ ..+.++
T Consensus 80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 2222 1111 111111
Q ss_pred ---------------CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215 108 ---------------APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172 (197)
Q Consensus 108 ---------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (197)
..-+|+++|+||+|+.. .+++..+++. .+++++||+++.|++++|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~ 220 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER 220 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence 12368999999999843 3444444432 36899999999999999999
Q ss_pred HHHHH
Q 029215 173 AIKVV 177 (197)
Q Consensus 173 i~~~~ 177 (197)
+.+.+
T Consensus 221 i~~~L 225 (233)
T cd01896 221 IWDKL 225 (233)
T ss_pred HHHHh
Confidence 98865
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=7.2e-21 Score=150.29 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=102.5
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCC--CCCC------------------------------CCCceeeceeEEEE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVV 48 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~ 48 (197)
|+++..++|+++|++++|||||+++|+... .... ..+++.+.....+
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~- 79 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF- 79 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE-
Confidence 788899999999999999999999998421 1110 1112212222223
Q ss_pred ECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 128 (197)
....+.+.+|||||++.|.......+..+|++++|+|+++...+.......+..+... ...|+++++||+|+.....
T Consensus 80 -~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~- 156 (425)
T PRK12317 80 -ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE- 156 (425)
T ss_pred -ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence 3334778899999998887655556788999999999987211211112222233333 1246899999999964211
Q ss_pred ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHHH
Q 029215 129 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 170 (197)
.......+++.++....+. .+++++||++|+|+++..
T Consensus 157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0000123455566665553 378999999999998743
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.7e-20 Score=128.79 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=102.0
Q ss_pred EECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc-------CCCCCCcEE
Q 029215 11 TVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF 81 (197)
Q Consensus 11 v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~~~~~ 81 (197)
++|++|+|||||++++.+.... ....+++............ ...+.+||+||...+..... ..+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876443 2223333333333333221 35788999999876654332 356789999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH--HHHHHHHhCCCeEEEec
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ--GEELRKLIGSPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S 159 (197)
++++|+++....... . +....... +.|+++|+||+|+..... ..... ...........+++++|
T Consensus 80 l~v~~~~~~~~~~~~-~-~~~~~~~~--~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEE-K-LLELLRER--GKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHH-H-HHHHHHhc--CCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence 999999998776665 2 33333333 899999999999976432 11110 11222233344899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 029215 160 SKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~ 176 (197)
|+++.|++++++++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999999875
No 195
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.5e-21 Score=130.47 Aligned_cols=162 Identities=27% Similarity=0.416 Sum_probs=135.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++++++|..|.||||++.+...+.|...+.+|.+...... +..+...+++..|||.|++.+..+...++-++.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 379999999999999999999999999999999986555443 3334446999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
+||++.+-+.... ..|...+...+.++|+++.|||.|..... .......+-+..++ .++++||+.+
T Consensus 89 mFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn 154 (216)
T KOG0096|consen 89 MFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSN 154 (216)
T ss_pred Eeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeecccc
Confidence 9999999999998 89998888888899999999999986542 11222234444555 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029215 164 QNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (197)
.|.+.-|-|+++.+.-.
T Consensus 155 ~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTGD 171 (216)
T ss_pred cccccchHHHhhhhcCC
Confidence 99999999999987543
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=6.1e-20 Score=152.61 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=112.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc----------C
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----------~ 73 (197)
+.++|+++|.+|||||||+|++++... ..++++++.+.....+..++ ..+++|||||...+..... .
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHH
Confidence 357899999999999999999987543 34555555544444444444 5677999999987654211 1
Q ss_pred C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 74 S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+ ...+|++++|+|+++.+... .+...+.+. +.|+++++||+|+.+... + ..+.+++.+.++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG 142 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLG 142 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhC
Confidence 2 24789999999999865432 233344444 899999999999875432 2 345677888889
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
. |++++||+++.|++++.+.+.+..
T Consensus 143 ~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 143 C-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 7 999999999999999999998765
No 197
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=122.67 Aligned_cols=167 Identities=25% Similarity=0.534 Sum_probs=134.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
.++|.++|.+..|||||+-.+.++.+.+.+..+.+.. ....+.+.+..+.+.+||++|++++....+....++.+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 6899999999999999999999998876666565444 456788899999999999999999999999889999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCC-CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
||.+.+.++..+ ..|.+..+.... .+| ++||+|.|+.-... ++..+....+++..++-++. +.+.+|+...
T Consensus 100 FDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s 171 (205)
T KOG1673|consen 100 FDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS 171 (205)
T ss_pred EecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence 999999999999 899888777653 344 67899999754321 00011233456677777887 8999999999
Q ss_pred CCHHHHHHHHHHHHcCC
Q 029215 164 QNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~~ 180 (197)
-++.++|.-+...+..-
T Consensus 172 INv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 172 INVQKIFKIVLAKLFNL 188 (205)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999888877653
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=136.40 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=122.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------c
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~ 71 (197)
..++|+++|-|++|||||+|++++.. ...+..+|+.+.+...+..++..+. ++||+|..+-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 47999999999999999999999865 4677888999999999999996655 9999995432211 1
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH----HHHHHH
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA----QGEELR 147 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~ 147 (197)
...+..++.+++|+|++.+-+-++. .+...+.+. +.+++||.||.|+.+... ...+ +.....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l 320 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL 320 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence 2235679999999999998776665 666677766 899999999999977532 2233 333333
Q ss_pred HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 148 KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
...++.+.+.+||++|.|+.++|+.+.+...
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 4456668999999999999999999887653
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=121.05 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=117.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCC--------CCCCCC---ce-eeceeEEEEECCeEEEEEEEEcCCcccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~---t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 71 (197)
....||+|.|+.++||||+++++..... ...+.. |+ ...+......++ ..+.++|||||++|.-+|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHHH
Confidence 3568999999999999999999987653 111111 22 222222222222 456799999999999999
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI- 150 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (197)
.-.++.+.++++++|.+.+..+ .. ..++..+....+ +|++|++||.|+... ...+.++++...-
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~~ 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLEL 150 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhcc
Confidence 9999999999999999999888 33 466666666532 999999999999876 3456666555544
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 151 GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
--.+.++.+|.++++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHhh
Confidence 23489999999999999999998876
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=139.60 Aligned_cols=153 Identities=25% Similarity=0.301 Sum_probs=116.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (197)
.-++++++|.|++|||||+|.|.+.. ...+.++|+.+.....+.++| +.+.+.||+|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 35899999999999999999999764 467889999999999999999 677799999987554332 234
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+++||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+..... . ... +...-.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~------------~---~~~-~~~~~~~ 352 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE------------L---ESE-KLANGDA 352 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc------------c---chh-hccCCCc
Confidence 6789999999999986333332 2222 2224799999999999976532 1 111 1222227
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.+.+|+++|.|++.+.+.|.+.+...
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999999999999887655
No 201
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=7.3e-20 Score=118.43 Aligned_cols=156 Identities=22% Similarity=0.298 Sum_probs=116.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|-.++|||||+..|.+....+ ..+|. -+..........+.+++||.+|+...+..|..|+++.|++||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~--GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTN--GFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccC--CcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 467999999999999999999997754322 22232 222222223445899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-------CCeE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-------SPAY 155 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 155 (197)
|+|.+|...|+++-..+.+.+.+.. ..+|+.|..||.|+...-. +...+...+ .-.+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~---------------~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK---------------VEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc---------------hHHHHHhcchhhhhhceEEe
Confidence 9999999999988777777766554 6899999999999864421 112222211 1134
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 029215 156 IECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
-++||..++|+.+-.+|+....
T Consensus 157 q~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeCccccccCccCcchhhhcCC
Confidence 5799999999998888887654
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.2e-19 Score=143.43 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=101.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhh--CCCCCC------------------------------CCCceeeceeEEEEEC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVFDNFSANVVVD 50 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~ 50 (197)
+...++|+++|+.++|||||+.+|+. +.+... ..+.+.+... ....
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 45679999999999999999999985 222110 0011111111 2233
Q ss_pred CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
...+.++||||||++.|.......+..+|++++|+|+++++++... ...+...... ....|+++++||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~-- 158 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDE-- 158 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccH--
Confidence 3347888999999998876666667889999999999988543211 0111122222 22357899999999964211
Q ss_pred cCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215 130 IDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (197)
........+++++++..+. .+++++||++|.|+.+
T Consensus 159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 0001224566667776653 3789999999999986
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=1.2e-19 Score=147.22 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=109.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh--CCCCCCCC---------------CceeeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYV---------------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~--~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (197)
+|+++|+.++|||||+++|+. +.+..... +.+.......+...+ +.+++|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 799999999999999999985 33322110 000011112233344 78889999999999988
Q ss_pred ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-
Q 029215 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL- 149 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (197)
+..+++.+|++++|+|+++....+. ..|+..+... ++|+++++||+|+...+. ....++...+...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAEL 147 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhh
Confidence 8888999999999999987543222 4555555555 799999999999865321 0112333333322
Q ss_pred ------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215 150 ------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 150 ------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 181 (197)
..+ |++++||++|. |+..+|+.+.+.+..+.
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 233 78999999996 79999999999987664
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=3.5e-19 Score=144.51 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=112.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh--CCCCCCCC------------Cce-eeceeEEEEECCeEEEEEEEEcCCcccccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~~------------~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (197)
+.-+|+++|+.++|||||+++|+. +.+..... .+. .+.......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457999999999999999999986 33432211 011 111122233344458889999999999999
Q ss_pred cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+..+++.+|++++|+|+++....+.. .++..+... ++|.++++||+|+..... ....+++..+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~ 150 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN 150 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence 888999999999999999886444332 333333444 789999999999865321 0112233333211
Q ss_pred -------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215 150 -------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 150 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 181 (197)
..+ |++.+||++|. |+..+++.|.+.+..+.
T Consensus 151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 233 78999999998 68999999999887664
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=7.9e-20 Score=121.13 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=97.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc----ccccCCCCCCcEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~~~~~~~~~~~i~ 83 (197)
||+++|+.|+|||||+++|.+... .+..|.. +.+ .=.++||||..... .-......+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988654 2222221 111 11379999954221 111223358999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
+.|++++.+.-. ..+...+ +.|++-|+||+|+..+. ...+.++++.+.-|....|++|+.+|
T Consensus 70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 999998754321 1222221 68999999999998432 35678888888889988999999999
Q ss_pred CCHHHHHHHHH
Q 029215 164 QNVKAVFDAAI 174 (197)
Q Consensus 164 ~~i~~~~~~i~ 174 (197)
+|++++.++|.
T Consensus 132 eGi~eL~~~L~ 142 (143)
T PF10662_consen 132 EGIEELKDYLE 142 (143)
T ss_pred cCHHHHHHHHh
Confidence 99999999874
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=2.9e-19 Score=126.70 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=96.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC------------CCC-----CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF------------PTD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~------------~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
.++|+++|..++|||||+++|+.... .+. ..+.+... ...........+.++||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999975310 000 11111111 122223334567899999998877
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
......+..+|++++|+|+..+...+. ...+..+... ++| +++++||+|+..... ......+++..+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l 148 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL 148 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence 666677889999999999987643332 3444455555 677 778999999864221 0111233455555
Q ss_pred HHhCC----CeEEEeccCCCCCH
Q 029215 148 KLIGS----PAYIECSSKTQQNV 166 (197)
Q Consensus 148 ~~~~~----~~~~~~Sa~~~~~i 166 (197)
...+. .+++++||++|.++
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 55543 58999999999874
No 207
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2e-20 Score=121.36 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=120.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+..+++++|-.|+||||+.-++.-++... ..|+++.... .+..+++.+++||+.|+-..+..|+.++.+.+++|||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 67899999999999999998887766533 3344432221 1233558899999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH---HHH-HhCCCeEEEec
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE---LRK-LIGSPAYIECS 159 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~S 159 (197)
+|.+|+........++...+.+.. .+..+++++||.|..... ...++.. +-+ +.....++++|
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEeec
Confidence 999999887766567777776655 567788999999986542 2222211 111 11223789999
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 029215 160 SKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (197)
|.+|+|++..++|+.+.+..+
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999887653
No 208
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=5.6e-19 Score=144.07 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=104.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC---CCCCCC--CCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN---TFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
-|+++|+.++|||||+++|++. .+.+.. ..|+...+......++ ..+.||||||++.|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 5889999999999999999853 222221 2222222221111133 34789999999998776667788999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC--CeEEEec
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS--PAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S 159 (197)
+|+|++++..-+.. +.+..+... ++| +++|+||+|+.+... .....+++..+....+. .+++++|
T Consensus 80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 99999875332222 223334333 566 579999999965321 00123444555544442 4899999
Q ss_pred cCCCCCHHHHHHHHHHHHcCC
Q 029215 160 SKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~ 180 (197)
|++|.|++++++.|.+.....
T Consensus 148 A~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred CCCCCCCHHHHHHHHHhhccc
Confidence 999999999999998765443
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=3.6e-19 Score=129.95 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=108.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC-C-----CCCCceee-----------ceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFP-T-----DYVPTVFD-----------NFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~-~-----~~~~t~~~-----------~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (197)
+|+++|+.|+|||||+++|+...-. . ....+..+ ..............+++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753110 0 00000000 01111222223367889999999999888
Q ss_pred ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc---------------cCC---
Q 029215 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF---------------IDH--- 132 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---------------~~~--- 132 (197)
+..+++.+|++++|+|+++...... ..+...+... ++|+++++||+|+....... ...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8888999999999999998754432 4555555555 89999999999987431110 000
Q ss_pred -----------------------------CCCccccHHHHHHH----HHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 133 -----------------------------PGAVPITTAQGEEL----RKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 133 -----------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
-+....+.+++..- .......|++..||.++.|+..+++.+.+.+..
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 00011222222221 122334578888999999999999999988754
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=2.9e-19 Score=128.41 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=93.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC--CCCC------------------------------CCCceeeceeEEEEECCeEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVDGSTVN 55 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 55 (197)
||+++|++++|||||+++|+... .... ..+++.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 68999999999999999987432 1100 01111111122233334 46
Q ss_pred EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 135 (197)
+.+|||||+++|.......+..+|++++|+|++++..-... .....+... ...++++|+||+|+..... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~ 149 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV 149 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence 77999999988766566678899999999999876432222 222222222 1235778999999864211 00
Q ss_pred ccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHHH
Q 029215 136 VPITTAQGEELRKLIGS--PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 169 (197)
......+.+.+.+.++. .+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00122345556666664 35899999999998753
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=1.9e-19 Score=141.14 Aligned_cols=164 Identities=17% Similarity=0.133 Sum_probs=104.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC------ceeece-----------------eEEEEECC------eEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP------TVFDNF-----------------SANVVVDG------STV 54 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~------t~~~~~-----------------~~~~~~~~------~~~ 54 (197)
...++|+++|..++|||||+++|.... .+.+.. |....+ ......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 457899999999999999999996431 111111 110000 00000011 135
Q ss_pred EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
.+++||+||+++|...+...+..+|++++|+|++++. ..+. ...+..+... ...|+++++||+|+.+...
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt--~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~------ 151 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT--KEHLMALEII-GIKNIVIVQNKIDLVSKEK------ 151 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch--HHHHHHHHHc-CCCeEEEEEEccccCCHHH------
Confidence 7889999999999877777777899999999999653 1111 1222233222 1346899999999975321
Q ss_pred CCccccHHHHHHHHHHh---CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 134 GAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.....+++..+.... +. +++++||++|+|+++++++|...+..+
T Consensus 152 --~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 152 --ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred --HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 001123344444332 33 899999999999999999999876543
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=8e-19 Score=142.48 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce----eece-eEEEE--ECCeE-----E-----EEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNF-SANVV--VDGST-----V-----NLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~----~~~~-~~~~~--~~~~~-----~-----~l~i~D~~G~~~ 66 (197)
.++..|+++|++++|||||+++|.+..+.....+.. +..+ ..... ..+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 455679999999999999999998765443333221 1111 10000 00111 1 267999999999
Q ss_pred ccccccCCCCCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC----C--CCC-c
Q 029215 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID----H--PGA-V 136 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~----~--~~~-~ 136 (197)
|..++...+..+|++++|+|+++ ++++..+ ..+... ++|+++++||+|+......... + ... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888889999999999998 4444433 223333 8999999999998532110000 0 000 0
Q ss_pred ccc---HH---HH-HHHHH-------------HhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 137 PIT---TA---QG-EELRK-------------LIGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 137 ~~~---~~---~~-~~~~~-------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.+. .+ +. ..+.. ..+..+++++||++|.|++++++.+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000 00 00 11110 11334789999999999999998886533
No 213
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=2.4e-19 Score=129.41 Aligned_cols=166 Identities=16% Similarity=0.123 Sum_probs=101.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCC-----------CCce------eece---eEEEEE---CCeEEEEEEEEcCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ 64 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~ 64 (197)
+|+++|+.++|||||+++|+........ ..+. +..+ ...+.. ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 0000 0000 111111 345688999999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC--CCCCccccHHH
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPITTAQ 142 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~--~~~~~~~~~~~ 142 (197)
..|......++..+|++++|+|+++..+... ..++...... +.|+++|+||+|+......... .........++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9988777778889999999999988766543 2444444333 6899999999998521110000 00000011223
Q ss_pred HHHHHHHhCC------Ce----EEEeccCCCCCHH--------HHHHHHHHHH
Q 029215 143 GEELRKLIGS------PA----YIECSSKTQQNVK--------AVFDAAIKVV 177 (197)
Q Consensus 143 ~~~~~~~~~~------~~----~~~~Sa~~~~~i~--------~~~~~i~~~~ 177 (197)
+..++...+. .| +++.|++.++++. .+++.|...+
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 3344444433 12 6788999988765 5666655544
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=6.2e-19 Score=122.30 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=96.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCccc----------ccccccCCC-
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED----------YNRLRPLSY- 75 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~- 75 (197)
.|+++|.+|+|||||++.+.++.+.....++..... ...+..++ .+.+|||||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996655444444432211 22222232 778999999533 222222222
Q ss_pred --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCC
Q 029215 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGS 152 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (197)
.+++++++++|..+..+... ......+... +.|+++++||+|+..... ............+ ....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID 145 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence 35678999999876532222 1222333333 689999999999854321 0011122222222 2444
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.+++++||+++.|+.+++++|.+.+
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHhC
Confidence 5889999999999999999998753
No 215
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.81 E-value=1e-19 Score=142.23 Aligned_cols=165 Identities=27% Similarity=0.390 Sum_probs=126.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|..|+|||||+-.+....+.+.-++-. ...+...+... .+...+.|++..+.-+.....-++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 467999999999999999999999998877655443 12222223223 355679999877665555566678999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHH-HHHHHHHh-CCCeEEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ-GEELRKLI-GSPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 157 (197)
++|+++++++.+.+...|+..+++.. .++|+|+||||+|...... .+.+. ...+...+ .+..+++
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999988 6999999999999987643 11121 22222232 3346899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
|||++..++.++|....+++.++
T Consensus 155 cSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhhHhhhhhhhheeecc
Confidence 99999999999999999988765
No 216
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=2.6e-19 Score=130.32 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=106.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc--eeeceeEEEEECCeEEEEEEEEcCCccccc------------c
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------R 69 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------~ 69 (197)
.+.++|+|+|.|++|||||.|.+.+.....-.... +.......++... ..+.|+||||.-.-. .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence 46899999999999999999999998765433333 3333333444344 677899999942111 1
Q ss_pred cccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc------CCCCCccccHHHH
Q 029215 70 LRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI------DHPGAVPITTAQG 143 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~------~~~~~~~~~~~~~ 143 (197)
.....+..||.+++++|+++.... +....+..+..+ .++|-++|.||.|......... -+........+-.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~--l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTP--LHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCc--cChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 122345689999999999963221 112333333333 2889999999999876533210 0000000011111
Q ss_pred HHHHHHh---------C---CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 144 EELRKLI---------G---SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 144 ~~~~~~~---------~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..+...- | +..+|.+||++|+|++++-++++..+...+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 1111111 1 224788999999999999999999887654
No 217
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=6.9e-19 Score=137.97 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=103.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCC------Cceeece---eE----------EEEE----C--C----eE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTVFDNF---SA----------NVVV----D--G----ST 53 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~t~~~~~---~~----------~~~~----~--~----~~ 53 (197)
+.+.++|+++|+.++|||||+.+|.+. +.+... .|....+ .. .+.. + + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 456799999999999999999988542 111111 1111110 00 0000 0 1 12
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
..+++|||||++.|..........+|++++|+|++++. ..+.. ..+ ..+... ...|+++|+||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~----- 156 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER----- 156 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh-----
Confidence 57889999999988765555566789999999999643 22221 111 222222 1246899999999965321
Q ss_pred CCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 133 PGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.....++++.+.+.. ...+++++||++|.|++++++.|.+.+..+
T Consensus 157 ---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 157 ---ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred ---HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 001123444444332 123899999999999999999999877543
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=3.1e-18 Score=123.97 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee--------------e-----ce--e------------------EEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------D-----NF--S------------------ANVV 48 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~--------------~-----~~--~------------------~~~~ 48 (197)
||+++|+.++|||||+.+|..+.+.+....... . .. . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997665331110000 0 00 0 0111
Q ss_pred ECCeEEEEEEEEcCCcccccccccCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 49 VDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
.. ...+.++||||++.|.......+ ..+|++++|+|+..+..-.+ ..++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence 12 25677999999998865444334 36899999999987644333 3555556555 79999999999986432
Q ss_pred ccccCCCCCccccHHHHHHHHHH-------------------------hCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215 127 QFFIDHPGAVPITTAQGEELRKL-------------------------IGSPAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
.. ....++..++... ....|+|.+||.+|.|++++...|..
T Consensus 155 ~~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 IL--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HH--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 10 0111122222211 12348999999999999999877643
No 219
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-21 Score=132.01 Aligned_cols=167 Identities=27% Similarity=0.456 Sum_probs=137.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEEC-CeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.-++++|+|..|+|||+++.++....|...|..|++..+... ...+ ...+++++||+.||++|..+..-+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 458999999999999999999999888888888886555432 2233 34578999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC--C---CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA--P---GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|||++...+|+.. ..|.+.+.... | -.|+++..||||...... ........++.++.|+...++
T Consensus 104 iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceee
Confidence 99999999999988 88888776654 2 466788899999876532 112366778888999989999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+|++.+.++++.-..+++.+...-
T Consensus 174 ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 174 TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eccccccChhHHHHHHHHHHHhhc
Confidence 999999999999999999876543
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5e-18 Score=135.76 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=122.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc------cCCC--C
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY--R 76 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~--~ 76 (197)
..+++++|.||||||||+|++++.. ..+++++.+-++....+...++. +++.|+||........ +.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999854 57889999988888888888865 5699999976544322 2222 3
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|+++-|+|+++.+.--.+.- ++.+. +.|++++.|++|...... ..-+..++.+..|. |++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl----QLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL----QLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH----HHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 5799999999998865443322 33333 899999999999977643 33456788889998 999
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++||+.|.|++++.+.+.+....+.
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999988766554
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.4e-18 Score=133.65 Aligned_cols=164 Identities=19% Similarity=0.183 Sum_probs=107.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCC------------CC-----CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.++.++|+++|+.++|||||+++|+..... +. ..+.+.+. ....+......+.++||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 456899999999999999999999752110 00 11111111 122233333567799999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|++++...+. ...+..+... ++| +++++||+|+.+... ......+++.
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~ 155 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence 887666666778999999999987543333 2333444444 788 578899999864321 0001223555
Q ss_pred HHHHHhCC----CeEEEeccCCCC--------CHHHHHHHHHHHHcC
Q 029215 145 ELRKLIGS----PAYIECSSKTQQ--------NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~ 179 (197)
.+....+. .+++++||++|. ++.++++.+.+.+..
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 66555553 489999999983 678888888877653
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.78 E-value=4.4e-18 Score=121.30 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee---cee-EEEEECCeEEEEEEEEcCCcccccc-----cccCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFS-ANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYR 76 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~---~~~-~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~ 76 (197)
+++|+++|.+|+|||||+|.+.+.........+... ... ..+.. .....+.+|||||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543221111110 001 11111 1123578999999753221 1122356
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC--ccccHHHHHHHHH----H-
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPITTAQGEELRK----L- 149 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~- 149 (197)
.+|+++++.+. .+......|+..+... +.|+++|+||+|+....... ..+.. .....++.++.+. .
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQR-SKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhc-cccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887432 2333335666677666 78999999999995432100 00000 0111122222222 2
Q ss_pred -hCCCeEEEeccC--CCCCHHHHHHHHHHHHcCCchh
Q 029215 150 -IGSPAYIECSSK--TQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 150 -~~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
...+++|.+|+. .++++..+.+.++..+...++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 234578999998 5799999999999998876543
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.6e-18 Score=125.56 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=90.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC--CCC-------------------------CC-----CCCceeeceeEEEEECCeEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN--TFP-------------------------TD-----YVPTVFDNFSANVVVDGSTVN 55 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~--~~~-------------------------~~-----~~~t~~~~~~~~~~~~~~~~~ 55 (197)
+|+++|+.++|||||+.+|+.. ... +. ..+++.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999988632 110 00 11111111222333444 67
Q ss_pred EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-------HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 128 (197)
+++|||||+..|...+...++.+|++++|+|+++.. ..+.. ..+ ...... ...|+++++||+|+......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLARTL-GVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHHc-CCCeEEEEEEcccccccccc
Confidence 889999999877766666678899999999999852 11111 222 222222 23689999999999732100
Q ss_pred ccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215 129 FIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK 167 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 167 (197)
........+++..+....+. .+++++||++|.|++
T Consensus 156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 00000112233333444443 479999999999986
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=7.8e-18 Score=131.68 Aligned_cols=163 Identities=19% Similarity=0.181 Sum_probs=106.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC-------C-----CCC-----CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT-------F-----PTD-----YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~-----~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
+++.++|+++|.+++|||||+++|+... + .+. ..+.+.+. ....+......+.|+||||++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHH
Confidence 3568999999999999999999998521 0 000 11111111 112222233567799999998
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|+.+....+. ...+..+... ++|.+ +++||+|+.+... .......++.
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~ 155 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR 155 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence 887666677788999999999987543332 2334444444 78866 5799999964221 1112233566
Q ss_pred HHHHHhCC----CeEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029215 145 ELRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKVVL 178 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 178 (197)
.+...++. .+++++||.+|. ++.++++.|.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 66666543 478999999984 67888888887764
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=6.4e-18 Score=132.23 Aligned_cols=149 Identities=20% Similarity=0.164 Sum_probs=96.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC------------CCC-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------------FPT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
+++.++|+++|+.++|||||+++|+... ..+ ...+.+.+. ....+......+.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 4568999999999999999999997320 000 011111111 222333344677899999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.|.......+..+|++++|+|+.++...+.. ..+..+... ++|.+ +++||+|+.+... ......++++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~ 155 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR 155 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence 8876655566789999999999875433332 333344444 67866 6899999965321 0001223566
Q ss_pred HHHHHhCC----CeEEEeccCCCC
Q 029215 145 ELRKLIGS----PAYIECSSKTQQ 164 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~~~~ 164 (197)
.+.+.++. .+++++||.+|.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 66766653 489999999874
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=1.2e-17 Score=120.48 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=78.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC--CCCCCCCc----------------ee-eceeEEEEE------CCeEEEEEEEEcC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPT----------------VF-DNFSANVVV------DGSTVNLGLWDTA 62 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t----------------~~-~~~~~~~~~------~~~~~~l~i~D~~ 62 (197)
+|+++|+.++|||||+.+|+... .......+ .. ......+.. ++..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999997532 11110000 00 001111111 1346889999999
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
|++.|......+++.+|++++|+|++++...+.. . .+...... ++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~-~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-T-VLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-H-HHHHHHHc--CCCEEEEEECCCcc
Confidence 9999998888889999999999999988666543 3 33333333 68999999999986
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=1.5e-17 Score=130.64 Aligned_cols=149 Identities=19% Similarity=0.150 Sum_probs=96.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCC------------C-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP------------T-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
++..++|+++|.+++|||||+++|+...-. + ...+.+.+.. ...+......+.|.||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~--~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEcc--EEEEccCCeEEEEEECCChH
Confidence 456899999999999999999999863110 0 0011111111 11222233566799999998
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.|.......+..+|++++|+|+.....-+. ...+..+... ++| +++++||+|+.+... ......+++.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~ 155 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR 155 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence 876666666788999999999987643333 2344445444 788 678899999975321 0011223555
Q ss_pred HHHHHhCC----CeEEEeccCCCC
Q 029215 145 ELRKLIGS----PAYIECSSKTQQ 164 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~~~~ 164 (197)
.+.+..+. .+++++||.+|+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcc
Confidence 66565543 489999999886
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=5.6e-17 Score=118.78 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=111.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~~ 78 (197)
-.+.++|.|++|||||++++..-+ -...|..|+.......+.+++. ..+.+-|+||.-+-.++. -.+++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 467899999999999999998754 3567777774333333333332 237799999964433322 2346789
Q ss_pred cEEEEEEeCCCH---hHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 79 DVFILAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
..++||+|++.. +-+++. +.+...+..+. .+.|.+||+||+|+.+.. .+...++++...-
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN 341 (366)
T ss_pred ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence 999999999988 666666 55555555544 589999999999996432 2234677777776
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHH
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
..++++||+.++|++++++.|.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 458999999999999999887653
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1e-16 Score=118.14 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=115.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-----ccccC---CC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-----RLRPL---SY 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----~~~~~---~~ 75 (197)
....|+|.|.|+||||||++.+++-.. ..+|+.|+...+..++...+ .++|++||||.-+-. .+-.. .+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 457899999999999999999998654 56788888777777777777 678899999943211 11000 11
Q ss_pred -CCCcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 76 -RGADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 76 -~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+-+++++|++|.+.. -+.+.. ..++..+...+. .|+++|+||+|..+.. ..+++......-+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~ 310 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGG 310 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhcc
Confidence 236889999998763 455665 566667776664 8999999999997543 23444444555555
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.....+++..+.+++.+-..+...+.+.
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 4567889999999999888888876655
No 230
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.9e-17 Score=126.15 Aligned_cols=167 Identities=22% Similarity=0.198 Sum_probs=117.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC-CCCC---------------CCC-ceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTD---------------YVP-TVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~---------------~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (197)
++.-++.|+-+-.-|||||..+|+.-. +.++ ..+ |........+..++..+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 456689999999999999999998521 1111 111 11111122222347779999999999999
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
|.....+.+..|+++++|+|++.+..-+.....|+ .++ . +..+|.|+||+|+...+. .....+..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~l-Afe-~--~L~iIpVlNKIDlp~adp---------e~V~~q~~~l 204 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYL-AFE-A--GLAIIPVLNKIDLPSADP---------ERVENQLFEL 204 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHH-HHH-c--CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence 99999999999999999999999876666633333 222 2 788999999999987532 0111122222
Q ss_pred HHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 147 RKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
....+. +++.+||++|.|++++++.|++.+..+....
T Consensus 205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 222233 6899999999999999999999998876443
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=5.7e-17 Score=120.29 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=77.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC--CCCC--------CCCceee-----------ceeEEEEECCeEEEEEEEEcCCcc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTD--------YVPTVFD-----------NFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~--------~~~t~~~-----------~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
-+|+++|++|+|||||+++|+... .... ...+..+ .......+....+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997421 1100 0001110 011122233344788899999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+|.......++.+|++++|+|+++...... ..+....... ++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 887766667889999999999987643222 3344444444 8999999999998654
No 232
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.2e-16 Score=124.64 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=115.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.=|.++|+..-|||||+..+-.........+.+...+. ..+..+. ..-.+.|+|||||+.|..+..+-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 34567899999999999999999887776655555544433 3333331 234677999999999999998888999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-------h-CCC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-------I-GSP 153 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 153 (197)
++|++++|.--.+.. +-+...+.. ++|+++++||+|..+.+ .+....-..+ | +..
T Consensus 83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v 145 (509)
T COG0532 83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDV 145 (509)
T ss_pred EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCce
Confidence 999999997444443 222333444 99999999999998543 2222222222 2 234
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.++++||++|.|++++++.+.-.....
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999988776544
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=2.9e-17 Score=118.46 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=100.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCC---CceeeceeEEEEECCeEEEEEEEEcCCccccccc-----ccCCCCCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----~~~~~~~~~ 79 (197)
||+++|+.+|||||+.+.++.+-.+.+.. +|.... ...+. ....+.+++||+||+..+... ....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999998765433222 222111 12222 223368899999999755432 355678999
Q ss_pred EEEEEEeCCCHhH---HHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCe
Q 029215 80 VFILAFSLISKAS---YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPA 154 (197)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 154 (197)
++|||+|+.+.+- +... ...+..+.+..|+..+.++++|+|+..+... ..........+.+.+...+ ...
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r----~~~~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSEDER----EEIFRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp EEEEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH----HHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred EEEEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHHHH----HHHHHHHHHHHHHHhhhccccceE
Confidence 9999999984432 3333 4456666777799999999999999654320 0000011122333333444 126
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++.||.-+ ..+-+.+..+++.+....
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 77777777 689999999999887543
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.3e-16 Score=124.73 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=104.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC------------C-----CCCCceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP------------T-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (197)
+..++|+++|+.++|||||+++|+..... + ...+.+.+ .....+......+.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence 56799999999999999999999863110 0 01111111 11222322335677999999988
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
|.......+..+|++++|+|+..+...+. ..++..+... ++|.+ +++||+|+.+... .......++..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~ 156 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE 156 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence 87666667789999999999987643333 3444455555 78976 5899999964221 00012234444
Q ss_pred HHHHhCC----CeEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029215 146 LRKLIGS----PAYIECSSKTQQ----------NVKAVFDAAIKVVL 178 (197)
Q Consensus 146 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~ 178 (197)
+....+. .+++++||.++. ++..+++.|.+.+.
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5444433 488999999875 56788888777654
No 235
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=5.1e-17 Score=120.66 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC--CC------C-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT--FP------T-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~--~~------~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
+|+++|++++|||||+++|+... .. + .....+.......+...+ +.+++|||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 58999999999999999997421 10 0 000111111122333444 677899999998888
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
..+...++.+|++++|+|+.+...-.. ..+...+... ++|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 888888999999999999987643333 2344445544 799999999999865
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=9.8e-17 Score=128.90 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=78.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh--CCCC--C-------------CCCCce---eece-eEEEEECCeEEEEEEEEcCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS--NTFP--T-------------DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~--~~~~--~-------------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G 63 (197)
+.-+|+|+|++++|||||.++|+. +... + ++.+.. +..+ .....+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 467999999999999999999973 2110 0 000000 0011 11122233347788999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
+.+|.......++.+|++++|+|+++...... ..+....... ++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 99888766677889999999999987643222 3444444444 899999999999865
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=8.7e-17 Score=133.94 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=82.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCC--------C-----CC-------CCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--------P-----TD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~-----~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (197)
.+..+|+|+|+.++|||||+++|+...- . .+ +..|.... ...+... .+.+++|||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~~--~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDWD--NHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEEC--CEEEEEEECCC
Confidence 4567999999999999999999985311 0 00 01111111 1123333 37888999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+.+|...+..+++.+|++++|+|+++....... ..| ..+... ++|+++++||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 999888888889999999999999987666554 344 334444 7999999999998754
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.8e-16 Score=124.19 Aligned_cols=165 Identities=21% Similarity=0.192 Sum_probs=102.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC------CC------CC-----CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN------TF------PT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~------~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.+.+++|+++|+.++|||||+++|.+. .. .+ ...+.+.+. ....+......+.|+||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence 356899999999999999999999621 10 00 011112121 122233333567799999998
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.|.......+..+|++++|+|++++...++ .+.+..+... ++|. ++++||+|+.+... .......+..
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~ 204 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELR 204 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHH
Confidence 876655555667999999999987643333 3444455555 7895 68899999975321 0001112333
Q ss_pred HHHHHhCC----CeEEEeccC---CCCC-------HHHHHHHHHHHHcCC
Q 029215 145 ELRKLIGS----PAYIECSSK---TQQN-------VKAVFDAAIKVVLQP 180 (197)
Q Consensus 145 ~~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~ 180 (197)
++....+. .|++++|+. +|.| +.++++.+.+.+..+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 44443332 478888875 4544 778888888776533
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=2.1e-16 Score=125.50 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=95.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC------CCCC-----------CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------FPTD-----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------~~~~-----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
++..++|+++|+.++|||||+++|+... .... ....+.+.....+..++ ..+.++|+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence 3468999999999999999999998521 1110 00111111111122233 567799999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
+|.......+..+|++++|+|+.+....+. .+++..+... ++| +++++||+|+.+... ......+++.
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~ 224 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVR 224 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHH
Confidence 887766666778999999999987754443 3444455555 788 678899999965321 0011223555
Q ss_pred HHHHHhC----CCeEEEeccCCCC
Q 029215 145 ELRKLIG----SPAYIECSSKTQQ 164 (197)
Q Consensus 145 ~~~~~~~----~~~~~~~Sa~~~~ 164 (197)
.+.+..+ ..+++++|+.++.
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHhcCCCcCcceEEEEEccccc
Confidence 5555543 2478999998874
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=2e-16 Score=125.03 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=99.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC--CCC------------------------CCCCce-eece---eEEEEECCe
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------DYVPTV-FDNF---SANVVVDGS 52 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------------------------~~~~t~-~~~~---~~~~~~~~~ 52 (197)
++++++|+++|+.++|||||+.+|+... ... +..+.. .... .........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4568999999999999999998887421 100 000000 0000 111222334
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~ 125 (197)
...++++|+||+++|.......+..+|++++|+|+++..- + ... ......+... ++| +++++||+|+...
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence 4678899999999999888888999999999999987421 0 122 2222233333 675 6888999998621
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHH
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVK 167 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 167 (197)
.. . ........++++.+.+..++ .+++++||.+|+|+.
T Consensus 161 ~~---~-~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 161 KY---S-KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hh---h-HHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 10 0 00001134566777777663 379999999999985
No 241
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.8e-15 Score=111.37 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=110.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-------ccCCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~~~ 77 (197)
--+++++|.|++|||||++.|++... ...|..|+.......+.+++ ..+|+.|+||.-.-.+. .-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 46899999999999999999997653 56788888888888888888 67789999986433322 2345689
Q ss_pred CcEEEEEEeCCCHhH-HHHHHHHH----------------------------------------HHHHhhhC--------
Q 029215 78 ADVFILAFSLISKAS-YENVAKKW----------------------------------------IPELRHYA-------- 108 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~-------- 108 (197)
||.+++|+|+..... .+.+..++ ...+.++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986543 22111111 11111110
Q ss_pred -----------------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHH
Q 029215 109 -----------------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 109 -----------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (197)
.-+|.+.|.||+|+.. .++...+.+.. .++.+||+.+.|++++.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e 282 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE 282 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence 1158899999999843 34445555444 678999999999999999
Q ss_pred HHHHHHc
Q 029215 172 AAIKVVL 178 (197)
Q Consensus 172 ~i~~~~~ 178 (197)
.|.+.+-
T Consensus 283 ~i~~~L~ 289 (365)
T COG1163 283 RIWDVLG 289 (365)
T ss_pred HHHHhhC
Confidence 9999873
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=1.9e-16 Score=126.09 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=93.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC--CCCCC----------CCce-------------------eecee-EEEEEC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------------FDNFS-ANVVVD 50 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~----------~~t~-------------------~~~~~-~~~~~~ 50 (197)
.+..++|+++|+.++|||||+++|+... ..... .++. +.... ......
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3567999999999999999999987432 11100 1110 00001 111122
Q ss_pred CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 130 (197)
.....+.|+||||++.|.......+..+|++++|+|+..+..-+.. ..+ ..+.... ..|+++++||+|+.....
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~lg-~~~iIvvvNKiD~~~~~~--- 177 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLLG-IKHLVVAVNKMDLVDYSE--- 177 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHhC-CCceEEEEEeeccccchh---
Confidence 2335678999999988865555557889999999999876432222 111 1222221 247899999999964211
Q ss_pred CCCCCccccHHHHHHHHHHhC---CCeEEEeccCCCCCHHHH
Q 029215 131 DHPGAVPITTAQGEELRKLIG---SPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 169 (197)
.......++...+....+ ..+++++||++|+|+.++
T Consensus 178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000011123333333433 247999999999998764
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=2.9e-16 Score=116.29 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=112.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----c---ccCCCCCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~~ 79 (197)
-|.++|.|++|||||++.+..-+ -..+|+.|+....-..+.. ...-.+.+-|+||.-+-.+ + .-.+++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 46799999999999999998754 3567888875554444444 2224677999999643322 2 123467789
Q ss_pred EEEEEEeCCCHhH---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 80 VFILAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
++++|+|++..+- .++. ..+...+..|. .+.|.+||+||+|+....+ ......+.+.+..+..
T Consensus 240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE 308 (369)
T ss_pred eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence 9999999986542 3333 55566666665 4899999999999755432 2333344455555553
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..+.+||.++.|++++...+.+.+...+
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 3434999999999999999998877664
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=8.5e-16 Score=116.24 Aligned_cols=80 Identities=25% Similarity=0.246 Sum_probs=54.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEE---------------------ECC-eEEEEEEEEcCCc-
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ- 64 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~i~D~~G~- 64 (197)
|+++|.|+||||||+++++..... .+++.++......... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 3344443222111111 122 3367999999997
Q ss_pred ---ccccccccC---CCCCCcEEEEEEeCC
Q 029215 65 ---EDYNRLRPL---SYRGADVFILAFSLI 88 (197)
Q Consensus 65 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 88 (197)
+++..+... .+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444334 378999999999997
No 245
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=1e-16 Score=125.75 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=92.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC--CCCCC----------CCc----------------------eeeceeEEEEECCe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPT----------------------VFDNFSANVVVDGS 52 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~--~~~~~----------~~t----------------------~~~~~~~~~~~~~~ 52 (197)
++|+++|+.++|||||+.+|+... ..... ..+ +.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 589999999999999999986421 11100 000 001111112223
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
...+.|+||||++.|.......+..+|++++|+|+..+...+.. +.+ ..+... ...++++++||+|+.....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~----- 150 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDE----- 150 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchH-----
Confidence 35778999999998876555677899999999999876433332 222 222222 1235889999999864221
Q ss_pred CCCccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHH
Q 029215 133 PGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA 168 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 168 (197)
.......++...+.+..+. .+++++||++|+|+++
T Consensus 151 -~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 151 -EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 0000112333444454443 3699999999999875
No 246
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=8.3e-16 Score=114.61 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CCCce-eeceeEEEEECCeEEEEEEEEcCCccccc-----
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN----- 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----- 68 (197)
..++|+|+|.+|+|||||+|+|++..+... ..+|. .......+..++..+.+++|||||...+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876432 22333 22334455567778899999999943221
Q ss_pred ---------------------ccccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 69 ---------------------RLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 69 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
......+. .+|+++|+++.+... +......++..+.. .+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 11112333 478888888876521 11111233444442 6899999999999653
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
.+ .......+.+.+..+++ ++|.....
T Consensus 159 ~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~ 185 (276)
T cd01850 159 EE--------LKEFKQRIMEDIEEHNI-KIYKFPED 185 (276)
T ss_pred HH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence 21 01234556666777776 67765543
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=8.7e-17 Score=115.95 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=111.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCC--CCceeeceeEEEEECCeEEEEEEEEcCCccc-------ccccccC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPL 73 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~ 73 (197)
+..+++++++|..|+|||||+|+|+.+...+-. ..+..........+++ -.+.+||+||..+ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 456899999999999999999999975542211 1111111111222344 3567999999654 5555667
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc---ccc--cCCCCCccccHHHHHHHHH
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFF--IDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~--~~~~~~~~~~~~~~~~~~~ 148 (197)
++...|.++++.++.|+.---+. ..|...+..-. +.++++++|.+|..... ... ...+...+...+.+....+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 78889999999999998544443 44444443332 58999999999986542 000 1111112222223322222
Q ss_pred Hh-CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 149 LI-GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 149 ~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.. ...|++.+|...++|++.+...+++.+...
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 21 245888889999999999999999988644
No 248
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=6.4e-16 Score=107.15 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=104.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCc----------ccccccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLR 71 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 71 (197)
+....-|+++|-++||||||+|.|++..-......|.+ +.....+.+++. +.+.|.||- +.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 34567899999999999999999998653222223332 223334445553 669999992 2333333
Q ss_pred cCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 72 PLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 72 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..|++ +..++++++|+-....-.+ .+.++.+... ++|+++++||+|...... ........++
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~ 162 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RNKQLNKVAE 162 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEccccCChhH-----------HHHHHHHHHH
Confidence 34443 3678888999877655444 3666667666 999999999999976432 1112223332
Q ss_pred Hh----CCCe-EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 149 LI----GSPA-YIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 149 ~~----~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
.. ...+ ++..|+..+.|++++...|.+.+..
T Consensus 163 ~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 163 ELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 2211 6678999999999999998887643
No 249
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.70 E-value=2.9e-17 Score=113.66 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEE-CCeEEEEEEEEcCCcccccccccC---CCCCCcEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF 81 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~~~~ 81 (197)
.-.|+++|++|+|||+|+.+|..+...+...+. ..... +.. ......+.++|+||+++.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 357999999999999999999998553332222 11111 111 122245679999999988763333 36789999
Q ss_pred EEEEeCCC-HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCC
Q 029215 82 ILAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~ 125 (197)
|||+|.+. ...+.+..+.++..+.... ...|++|++||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 4556666566666665443 58999999999999765
No 250
>COG2262 HflX GTPases [General function prediction only]
Probab=99.70 E-value=7.6e-16 Score=116.82 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=110.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~ 73 (197)
.....|.++|..++|||||+|+|++.. +..+.-.++-+.....+.+.+ ...+.+-||.|.-+ |.+.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 356889999999999999999999654 334555555555555555553 14556899999432 22221 1
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
-...+|.++.|+|++++.....+ ......+.+.. .+.|+++|.||+|+..+. ..........
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~- 330 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS- 330 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence 23579999999999999666665 66666666654 479999999999986532 1112222222
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+..+.+||++|.|++.+++.|.+.+...
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 2578899999999999999999987643
No 251
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=3.4e-16 Score=123.82 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=97.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce-eece---eEEEEECCe
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV-FDNF---SANVVVDGS 52 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~-~~~~---~~~~~~~~~ 52 (197)
+++.++|+++|+.++|||||+.+|+.. .... +..+.. .... .........
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 456899999999999999999988752 1110 000000 0000 111222334
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~ 125 (197)
...++|+|+||+.+|.......+..+|++++|+|++.+.. + ... .+.+..+... ++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence 4678899999999998777777889999999999987531 0 112 2223334444 777 5689999995321
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (197)
.. . ........+++..+....++ .+++++|+.+|+|+.+
T Consensus 161 ~~---~-~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NY---S-QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hh---h-HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 00 0 00001123344444444443 4789999999999863
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=1.3e-15 Score=122.44 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=78.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh-CCCCCCC-----C----Ccee----------ece-eEEEEECCeEEEEEEEEcC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS-NTFPTDY-----V----PTVF----------DNF-SANVVVDGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~-~~~~~~~-----~----~t~~----------~~~-~~~~~~~~~~~~l~i~D~~ 62 (197)
.+..+|+|+|++++|||||+++|+. ....... . .+.. ..+ .....+....+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999853 2111100 0 0110 111 1122334445788899999
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
|+..|.......+..+|++++|+|+++..... ...+....... ++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR--TRKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECccccC
Confidence 99888776666788999999999998752222 23444444444 899999999999853
No 253
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=7.6e-16 Score=114.86 Aligned_cols=147 Identities=22% Similarity=0.228 Sum_probs=91.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCC-----CCce--------------eeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----VPTV--------------FDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~t~--------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
+|+++|++|+|||||+++++...-.... .+++ .......+..++ +.+++|||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999998753211000 0010 000111233344 678899999998887
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..+...+..+|++++|+|+++....... ..| ..+... ++|.++++||+|..... ..+....+.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~~------------~~~~~~~l~~ 142 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERAD------------FDKTLAALQE 142 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCCC------------HHHHHHHHHH
Confidence 7777788899999999999987554433 333 334444 78999999999986532 2233344545
Q ss_pred HhCCCeEEE--eccCCCCCHHHHHHHH
Q 029215 149 LIGSPAYIE--CSSKTQQNVKAVFDAA 173 (197)
Q Consensus 149 ~~~~~~~~~--~Sa~~~~~i~~~~~~i 173 (197)
.++. ++++ +...++.++..+.+.+
T Consensus 143 ~~~~-~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 143 AFGR-PVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred HhCC-CeEEEEecccCCCceeEEEEcc
Confidence 5554 3433 3445555544443333
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.7e-15 Score=116.53 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=118.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--------------CCCC-ce-eeceeEEEEE-CCeEEEEEEEEcCC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------DYVP-TV-FDNFSANVVV-DGSTVNLGLWDTAG 63 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--------------~~~~-t~-~~~~~~~~~~-~~~~~~l~i~D~~G 63 (197)
.++.-++.++-+-.-|||||..|++.. .+.. ...+ |+ .......+.. ++..|.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345667889999999999999998742 1211 1111 11 2222333443 56889999999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
|-+|.....+.+..|.++++|+|++.+-.-+.+...| ..+.. +.-++-|+||+||+... ...-.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Ad------------pervk 149 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAAD------------PERVK 149 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCC------------HHHHH
Confidence 9999998888999999999999999986666663333 23322 67899999999998753 22333
Q ss_pred HHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 144 EELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 144 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
++.....|.. ..+.+|||+|.|++++++.|++.+..+..
T Consensus 150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 4444555553 46789999999999999999999988763
No 255
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.4e-16 Score=105.98 Aligned_cols=156 Identities=17% Similarity=0.253 Sum_probs=113.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.=|++++|-.++|||||++.|..++. ..+.||.-. .+....+.+ ++++.+|.+|+..-+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHP-TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHP-TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCC-ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 456899999999999999999988765 334444311 123344666 7788999999998888999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH---HHh---C------
Q 029215 85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR---KLI---G------ 151 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~------ 151 (197)
+|+-|.+.|.+.+..+-..+.... .+.|+++.+||+|..... ++++.+-.. +.- +
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhcccccccccC
Confidence 999999999988676655554443 589999999999998752 222222111 111 1
Q ss_pred --C--CeEEEeccCCCCCHHHHHHHHHHH
Q 029215 152 --S--PAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 152 --~--~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
. ...+.||...+.|..+.|.|+.+.
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1 134668888888877878777654
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=9.8e-16 Score=126.48 Aligned_cols=154 Identities=19% Similarity=0.130 Sum_probs=93.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------CCCceee----------------------ceeEEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFD----------------------NFSANVVV 49 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------~~~t~~~----------------------~~~~~~~~ 49 (197)
+..++|+++|++++|||||+++|+... .... ..+++.+ .....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 457999999999999999999988532 1110 1111000 00111222
Q ss_pred CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
++ ..+.|+||||++.|.......+..+|++++|+|++.+...+.. .....+... ...|+++++||+|+.+...
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~-- 174 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ-- 174 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh--
Confidence 33 4667999999988765555567889999999999876433222 112222222 1357889999999964211
Q ss_pred cCCCCCccccHHHHHHHHHHhCC--CeEEEeccCCCCCHHH
Q 029215 130 IDHPGAVPITTAQGEELRKLIGS--PAYIECSSKTQQNVKA 168 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 168 (197)
........+...+....+. .+++++||++|.|+.+
T Consensus 175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0000112233344455554 3689999999999874
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.66 E-value=1.3e-15 Score=120.28 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=103.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCC---CCCC-CC-ceeeceeEE-------------E-EEC------------C
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDY-VP-TVFDNFSAN-------------V-VVD------------G 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~-~~-t~~~~~~~~-------------~-~~~------------~ 51 (197)
....++|.++|+...|||||+..|++..- .++. .+ |+..-+... + ... +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 45679999999999999999999985321 1110 00 100000000 0 000 0
Q ss_pred ----eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 52 ----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ----~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
....+.|+|+||++.|-......+..+|++++|+|+.++ ...+.. +. +..+... .-.|+++|+||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-eh-l~i~~~l-gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EH-LAAVEIM-KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HH-HHHHHHc-CCCcEEEEEecccccCHH
Confidence 023678999999998877666667889999999999874 222222 22 2222222 123688999999997532
Q ss_pred ccccCCCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 127 QFFIDHPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
. .....++++.+.... ...+++++||++|.|++.+++.|.+.+..+
T Consensus 188 ~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 188 Q--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred H--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 1 001122333333221 234899999999999999999999866544
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=2e-15 Score=98.61 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=69.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---------cccCCCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR 76 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~~ 76 (197)
+|+|+|.+|+|||||+|.|++... .....+++.......+..++..+ .++||||...... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999997533 23334444333334555677544 5999999643211 1122347
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (197)
.+|++++|+|++++.. +.. ..++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 8999999999887422 122 34444553 38999999998
No 259
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=5.2e-15 Score=118.57 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=75.7
Q ss_pred EEEEEEEcCCcccc-----cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215 54 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 54 ~~l~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 128 (197)
..+.|.||||...- .......+..+|+++||+|++...+..+. .+...+.....+.|+++|+||+|+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence 45679999997532 11233468899999999999876444443 44555655522369999999999854221
Q ss_pred ccCCCCCccccHHHHHHHHHHh------CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 129 FIDHPGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...+....+.... ....+|++||+.|.|++.+++.|.+.
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2244444443211 23468999999999999999999884
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=5.8e-15 Score=122.92 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=81.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--C------CC-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--F------PT-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
.+..+|+|+|+.++|||||+++|+... . .+ ...+.+.......+..++ ..++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 456799999999999999999997421 1 00 011111112222344445 56789999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
..|...+...++.+|++++|+|+.++...++. ..+..+... ++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88877777788899999999999887544433 344445544 7999999999998753
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=4.5e-15 Score=123.62 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=81.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CC-----CC------------CCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP-----TD------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~-----~~------------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
+.-+|+|+|++++|||||+++|.... .. .. ..+++.......+..++ +.+++|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence 45699999999999999999997421 10 00 01111122223344444 678899999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+|...+...++.+|++++|+|+.+....+.. .+...+... ++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 8887777888999999999999987555443 333344444 7999999999999753
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=118.24 Aligned_cols=172 Identities=16% Similarity=0.046 Sum_probs=123.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------C
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------S 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------~ 74 (197)
+.-.++|+|.|+||||||++.++.... ..+|..|+...+..++.+.. ..++++||||.-+....-.. .
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 456899999999999999999887654 46677777777766666555 67889999995332111001 1
Q ss_pred CCCCcEEEEEEeCCC--HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH--HHHHHHHh
Q 029215 75 YRGADVFILAFSLIS--KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ--GEELRKLI 150 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 150 (197)
.+--.+|+|+.|++. +-|..+. -.++..+...+.+.|+|+|+||+|+..... ++++. ..+....-
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD 313 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence 122356899999976 3566666 567778888888999999999999987654 44433 22333333
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhhhhhhc
Q 029215 151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKK 189 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~ 189 (197)
+..+++++|+.+..|+-++.....+.++..+-+.+.+.+
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~ 352 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSE 352 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhh
Confidence 434899999999999999999999998887766654443
No 263
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.2e-15 Score=115.11 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=109.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.=|-|+|+..-|||||+..|-.........+.+...+.. .+.. +| -.+.|.|||||..|..+..+...-.|+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45668899999999999999998766544444443333321 2222 44 56779999999999999988888899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-H-------HHHhCCCe
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L-------RKLIGSPA 154 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~ 154 (197)
+|+.+.|+--.+.. +-++.... .+.|+++++||+|..+.. .+...+ + ...-|...
T Consensus 230 LVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred EEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCcee
Confidence 99999987444433 12222222 399999999999987542 222222 2 12224457
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
++++||++|+|++.+.+.+.-.+
T Consensus 293 vipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEEeecccCCChHHHHHHHHHHH
Confidence 89999999999999999887765
No 264
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=2.7e-14 Score=118.99 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=80.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh--CCC------CC-----------CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTF------PT-----------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
++..+|+|+|.+++|||||+++|+. +.. .+ ...+.+.+.....+.+.+ ..++++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 3567999999999999999999973 211 00 011122222223344455 57789999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
..|.......++.+|++++|+|+......++. ..+..+... ++|.++++||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 88766666677889999999999877555443 334445555 789999999999874
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.61 E-value=1.3e-13 Score=98.31 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=98.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC---CCceeeceeEEEEECCeEEEEEEEEcCCccccccc-----------cc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~ 72 (197)
++|+++|.+|+|||||+|.+++....... .+.+...........+ ..+.++||||....... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999986542211 1222222233344555 45679999996544210 11
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.....+|++++|+++.+ .+-.+ ...++.+.+.+. -.+++++.|+.|........ ..........+.+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~----~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLE----DYLENSCEALKRLLEK 151 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHH----HHHHhccHHHHHHHHH
Confidence 22467899999999876 22222 344444444431 35889999999976532100 0000012345556666
Q ss_pred hCCCeEEEec-----cCCCCCHHHHHHHHHHHHcC
Q 029215 150 IGSPAYIECS-----SKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 150 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~ 179 (197)
.+. .++..+ +..+.+++++++.+.+.+..
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 554 444443 45678899999998888765
No 266
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.1e-15 Score=113.85 Aligned_cols=166 Identities=22% Similarity=0.216 Sum_probs=110.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-c--------ccC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L--------RPL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~--------~~~ 73 (197)
..++|+++|.|++|||||+|.|.... +..+.++|+.+.....++++| +.+.+.||+|..+... . ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 45899999999999999999999865 467788899999999999999 5666999999765211 1 123
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHH-HHHHHHHhhhC-------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215 74 SYRGADVFILAFSLISKASYENVA-KKWIPELRHYA-------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 145 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
.+..+|++++|+|+.....-.+.. ...+.....-. ...|++++.||.|+...-.- ...-.+.+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~-- 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE----MTKIPVVYPSA-- 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc----ccCCceecccc--
Confidence 456899999999994433222221 22322222221 24799999999999765210 00000000110
Q ss_pred HHHHh-CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 146 LRKLI-GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 146 ~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
... ....+.++|+++++|++.+.+.+.+.+...
T Consensus 419 --~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 419 --EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred --ccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 111 222455699999999999999998876543
No 267
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=1.7e-14 Score=122.72 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=95.2
Q ss_pred CcHHHHHHHHhhCCCCCCCCCceeeceeE-EEEECC------e----------EEEEEEEEcCCcccccccccCCCCCCc
Q 029215 17 VGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDG------S----------TVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 17 ~GKstli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~------~----------~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
++||||+..+.+........+.+...+.. .+..+. . .-.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999877655444444333221 111111 0 012789999999999888777788899
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc------cHHHH--------HH
Q 029215 80 VFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI------TTAQG--------EE 145 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~--------~~ 145 (197)
++++|+|++++-..+.. ..+..+... ++|+++|+||+|+.+........+....+ ...+. .+
T Consensus 552 ivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999999874222221 222333333 78999999999997532210000000000 00000 00
Q ss_pred HH-------------HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 146 LR-------------KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 146 ~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++ ...+..+++++||++|+|+++++.++.....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11 1123458899999999999999998865443
No 268
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=2.6e-14 Score=108.75 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=88.3
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 121 (197)
.+.+.+||++|+...+..|.+++.++++++||+|.++. ..+.+....+...+.... .++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999874 456666455555555433 6899999999999
Q ss_pred ccCCcccc-------cCCCCCccccHHHHHHHHHH-----h---CC-CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 122 LRDDKQFF-------IDHPGAVPITTAQGEELRKL-----I---GS-PAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 122 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+..+.... ++-... ..+.+.+..+... . +. .-.+.++|.+..++..+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 76543211 111110 1234444443332 1 11 12345899999999999999998876543
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=3.2e-14 Score=118.47 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=73.3
Q ss_pred ECCCCCcHHHHHHHHhhCCC--CC--CC-CC-ce-------------eeceeEEEEECCeEEEEEEEEcCCccccccccc
Q 029215 12 VGDGAVGKTCMLISYTSNTF--PT--DY-VP-TV-------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 12 ~G~~~~GKstli~~l~~~~~--~~--~~-~~-t~-------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 72 (197)
+|+.++|||||+++|....- .. .. .. +. .......+...+ +.+++|||||+..|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999964211 00 00 00 11 011112333444 7788999999988877777
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
..+..+|++++|+|+++....... ..| ..+... +.|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCCC
Confidence 788899999999999987655543 333 334444 7899999999998743
No 270
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=8.4e-14 Score=108.44 Aligned_cols=82 Identities=24% Similarity=0.223 Sum_probs=55.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEE---------------------EC-CeEEEEEEEEcCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VD-GSTVNLGLWDTAG 63 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~i~D~~G 63 (197)
++|+++|.|++|||||+++|+..... .+++.++......... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3454444222221111 11 1236789999999
Q ss_pred cc----cccccccCC---CCCCcEEEEEEeCC
Q 029215 64 QE----DYNRLRPLS---YRGADVFILAFSLI 88 (197)
Q Consensus 64 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 88 (197)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 233333334 77899999999997
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.5e-14 Score=108.70 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=97.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--------------C----------------CCCceeeceeEEEEE
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--------------D----------------YVPTVFDNFSANVVV 49 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--------------~----------------~~~t~~~~~~~~~~~ 49 (197)
+.+.+++++++|+..+|||||+-+|+.. .+.. . +.+.+.+ ......
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~--~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTID--VAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEE--EEEEEe
Confidence 4577899999999999999999887732 2211 0 0000000 111122
Q ss_pred CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
....+.+.|.|+||+.+|-..+.....+||+.|+|+|+.+.+.-.. ...+-+ .+....--..+++++||+|+.+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccc
Confidence 2334678899999999888877788889999999999988742111 101111 1111111235688889999976
Q ss_pred CcccccCCCCCccccHHHHHHHHHHhCCC----eEEEeccCCCCCHHH
Q 029215 125 DKQFFIDHPGAVPITTAQGEELRKLIGSP----AYIECSSKTQQNVKA 168 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~ 168 (197)
-.+ . .......+...+.+..|+. +|+++|+..|+|+.+
T Consensus 160 wde-----~-rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDE-----E-RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCH-----H-HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 221 0 0111222334455555543 589999999998754
No 272
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.57 E-value=5.2e-14 Score=103.77 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=117.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC----CcEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG----ADVFI 82 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~----~~~~i 82 (197)
-+|+|+|..++|||||+.+|.+..-...-..-...+...+-...+...++.+|-+.|......+....+.. -..||
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 57999999999999999999876522221111122222233334455788899999987666665554432 35788
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCC-----------------------------------------------------
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAP----------------------------------------------------- 109 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----------------------------------------------------- 109 (197)
++.|+++++.+-+.++.|...+.++..
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL 212 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL 212 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence 999999997765555777666554421
Q ss_pred ---------CCCEEEEeecCCccCCcccc-cCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 110 ---------GVPIILVGTKLDLRDDKQFF-IDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 110 ---------~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++|+++|++|||...-.... ...++........++.|+..+|. ..+.+|++...|++-++.+|.+..+-
T Consensus 213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 15999999999984322111 01122222345577889999998 89999999999999999999998753
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.57 E-value=6e-15 Score=93.84 Aligned_cols=137 Identities=23% Similarity=0.171 Sum_probs=96.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc----ccCCCCCCcEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~----~~~~~~~~~~~i~ 83 (197)
|++++|..|+|||||.+.+.++.... ..|. .+++++. -.+||||....... ......++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ------Ave~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ------AVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cccc------eeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 79999999999999999998764321 1111 1222221 15899995322222 2334568999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|-.++++++.-.. -+. ... ..|+|-|++|.|+.++ -+.+..+++..+-|..++|++|+.++
T Consensus 71 v~~and~~s~f~p--~f~----~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 71 VHAANDPESRFPP--GFL----DIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred eecccCccccCCc--ccc----ccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence 9999998653221 111 111 5669999999999864 34667788888999989999999999
Q ss_pred CCHHHHHHHHHH
Q 029215 164 QNVKAVFDAAIK 175 (197)
Q Consensus 164 ~~i~~~~~~i~~ 175 (197)
.|++++++.+..
T Consensus 132 ~gv~~l~~~L~~ 143 (148)
T COG4917 132 QGVEELVDYLAS 143 (148)
T ss_pred ccHHHHHHHHHh
Confidence 999999998764
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.55 E-value=7.9e-14 Score=100.62 Aligned_cols=124 Identities=19% Similarity=0.122 Sum_probs=71.6
Q ss_pred EEEEEEEEcCCccc-ccccccCCC-------CCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215 53 TVNLGLWDTAGQED-YNRLRPLSY-------RGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~l~i~D~~G~~~-~~~~~~~~~-------~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (197)
.+...++|||||-+ |.+.....+ ....++++++|... +.+|-..--.--..+.+. ..|.+++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence 46677999999853 433222221 34678888998744 444443311112333333 899999999999
Q ss_pred ccCCcccc-------------c--CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 122 LRDDKQFF-------------I--DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 122 ~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+....-.. . ...-...+...-...+..-+.....+-+|+.+|.|++++|..+-+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 97753210 0 000011111111112222233346688999999999999999887764
No 275
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.1e-14 Score=98.97 Aligned_cols=167 Identities=16% Similarity=0.134 Sum_probs=103.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCC---CCcEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVF 81 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~~~~ 81 (197)
+.-.|+++|+.+||||+|+-+|..+.+.+...+. ......+...+.. +.++|.||+++.+.-...++. .+-++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3457999999999999999999887543332221 1222333344433 569999999987654333333 78999
Q ss_pred EEEEeCCC-HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCccccc------------------------CCC
Q 029215 82 ILAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFI------------------------DHP 133 (197)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~------------------------~~~ 133 (197)
+||+|..- .....+..+.++..+.... ...|++|++||.|+.-...... +..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99998743 3445555456666665552 5889999999999975533210 000
Q ss_pred CCccccHHHHHH--HHHHh-CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 134 GAVPITTAQGEE--LRKLI-GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
......-.++.. |+..- ....+.++|++.+ +++++-+|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 000011111111 22211 1225778999998 899999998765
No 276
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.54 E-value=4.2e-13 Score=105.69 Aligned_cols=164 Identities=24% Similarity=0.340 Sum_probs=119.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.++.+.+.|+|+.++|||.|++.+.++.+.+.+.++....+ ...+...+....+.+.|.+-. ....+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 45789999999999999999999999988776656654443 334445577777778887765 222222222 679999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
.++||.+++.+|......+...... ...|+++|++|+|+.+..+ ...+.. .+++++++..+.+..|.+
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q-------~~~iqp---de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQ-------RYSIQP---DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhh-------ccCCCh---HHHHHhcCCCCCeeeccC
Confidence 9999999999998873333222222 4899999999999987643 111222 688899999888889998
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+.-. .++|..|...+..+.
T Consensus 568 ~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCC-chHHHHHHHhhhCCC
Confidence 6333 899999999887665
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.52 E-value=1.5e-13 Score=105.40 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=86.7
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 122 (197)
+.+.+||++|+...+..|.++++++++++||+|.++- ..+.+....|...+.... .++|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5678999999999999999999999999999999973 356666455555554433 68999999999998
Q ss_pred cCCcccc-------cCCCCCccccHHHHHHHHHH-----hC----C-CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 123 RDDKQFF-------IDHPGAVPITTAQGEELRKL-----IG----S-PAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~----~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
....... ++... ..+.+.+..+... .. . .-++.++|.+..++..+|+.+.+.+.++.
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g--~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKG--PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCC--CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 6542211 11111 1233444433322 11 1 12345889999999999999888877654
No 278
>PRK13768 GTPase; Provisional
Probab=99.51 E-value=1e-13 Score=102.27 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=72.1
Q ss_pred EEEEEEcCCcccc---cccccCCC---CC--CcEEEEEEeCCCHhHHHHHH-HHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 55 NLGLWDTAGQEDY---NRLRPLSY---RG--ADVFILAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 55 ~l~i~D~~G~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+||+||+.+. +..+..++ .. ++++++++|+.......+.. ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5679999998653 23332222 22 89999999996654333321 2233222222238999999999999765
Q ss_pred cccccCCCCCc----------------cccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 126 KQFFIDHPGAV----------------PITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 126 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
........... .....+..+..+..+ ..+++++|++++.|++++.++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32100000000 000001111223334 237899999999999999999988774
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=9.5e-14 Score=116.10 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=79.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC---------------CCCC---CCCceeec-eeEEEEECCeEEEEEEEEcCCcc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT---------------FPTD---YVPTVFDN-FSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~---~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
+..+|+++|+.++|||||+++|+... +... ...|.... ........+..+.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999997521 1000 11121111 11222345566889999999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
+|.......++.+|++++|+|+.+....+.. ..| ..+... +.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~~--~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALKE--NVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHHc--CCCEEEEEEChhccc
Confidence 9887777788999999999999875433332 222 223233 678899999999864
No 280
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.48 E-value=1.4e-12 Score=92.90 Aligned_cols=104 Identities=20% Similarity=0.183 Sum_probs=64.5
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
....++++.|........+. -++.++.|+|+.+.++... .....+ ...=++++||+|+.+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence 45557788884322222211 2578999999987765321 111111 122389999999975311
Q ss_pred CCccccHHHHHHHHHH-hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 134 GAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
...+...+..+. ....+++++||++|.|++++|+++.+.+.
T Consensus 155 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ----ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ----ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 123333333333 34458999999999999999999997654
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.48 E-value=6.4e-13 Score=99.06 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCC---CC-------CC--CCceeec-----------------eeEEEE---E
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF---PT-------DY--VPTVFDN-----------------FSANVV---V 49 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~-------~~--~~t~~~~-----------------~~~~~~---~ 49 (197)
..+..+|++.+|+..-||||||-||+...- .+ .. ..+.+.. ++..+. +
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 456679999999999999999999885421 00 00 0111100 011111 1
Q ss_pred CCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
.-..-.+.+-|||||+.|...+-.-...||++|+++|+-.+-.-+.-+..++..+.. =..++++.||+||.+..+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG---IrhvvvAVNKmDLvdy~e-- 156 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG---IRHVVVAVNKMDLVDYSE-- 156 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC---CcEEEEEEeeecccccCH--
Confidence 112235679999999999988877888899999999996543333333444333331 245678889999987532
Q ss_pred cCCCCCccccHHHHHHHHHHhCCC--eEEEeccCCCCCHH
Q 029215 130 IDHPGAVPITTAQGEELRKLIGSP--AYIECSSKTQQNVK 167 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~ 167 (197)
+.......+...|+.+++.. .++++||..|+|+-
T Consensus 157 ----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 ----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 01112334566788887753 57899999999864
No 282
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.48 E-value=3.7e-13 Score=98.81 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=76.8
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
+++..+.+.+++++|.+++|+|++++. ++..+ ..|+..+... ++|+++|+||+|+.+... +..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~~--~i~~vIV~NK~DL~~~~~----------~~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEAQ--NIEPIIVLNKIDLLDDED----------MEKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEECcccCCCHH----------HHHHHH
Confidence 577888888999999999999999887 78777 8888766554 899999999999965432 333344
Q ss_pred HHHHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215 144 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
..+ +..+. +++++||++|.|++++|+.+.+
T Consensus 91 ~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIY-RNIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 444 34676 8999999999999999998764
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=1.7e-14 Score=105.21 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=59.6
Q ss_pred EEEEEEcCCcccccccccCC------C--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCC
Q 029215 55 NLGLWDTAGQEDYNRLRPLS------Y--RGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~ 125 (197)
.+.++|||||.++...|... + ...-++++++|+.-..+.......++..+.... -+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 56799999998765433222 1 345688889998544332222122222222211 28999999999999762
Q ss_pred cccc---c-CCCCC--------ccccHHHHHHHHHHhCCC-eEEEeccCCCCCHHHHHHHHHHHH
Q 029215 126 KQFF---I-DHPGA--------VPITTAQGEELRKLIGSP-AYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 126 ~~~~---~-~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.... . ..... .....+...++...++.. .++++|+++++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2000 0 00000 000111222222334555 789999999999999999987764
No 284
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.9e-13 Score=108.38 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=112.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEE-------------CC----eEEEEEEEEcCCcccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------------DG----STVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~-------------~~----~~~~l~i~D~~G~~~~ 67 (197)
+..-++|+|+..+|||-|+..+.+..+.....+.+...+...+.. ++ ..--+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345689999999999999999987655443333332222111110 00 1113568999999999
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC-------CCccc--
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP-------GAVPI-- 138 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-------~~~~~-- 138 (197)
..+..+....||++|+|+|+..+-..+.+ .-+.+++.. ++|+||++||+|........+..+ +...+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999776333333 223445444 899999999999865543221000 00000
Q ss_pred -----cHHHHHHHHHH-h------------CCCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 139 -----TTAQGEELRKL-I------------GSPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 139 -----~~~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
....+.+|+.+ + ....++++||..|+||.+++-+|++.......++
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 00112223222 0 1235678999999999999999999877655443
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=1.8e-12 Score=96.83 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=71.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-------ccCCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSY 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~ 75 (197)
..++|+++|.+|+||||++|++++.... ....++...........++ ..++++||||..+.... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 5789999999999999999999986532 2222222111112223445 67889999997654211 11111
Q ss_pred --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCC
Q 029215 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~ 125 (197)
...|+++||..++.. .+......++..+...+ --.+++++.|+.|..+.
T Consensus 115 ~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 258999999655432 12212123444444443 13578999999997743
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=99.42 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=111.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCce-------------eeceeEEEEECCeEEEEEEEEcCCccccccc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV-------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 70 (197)
.-+|+++-+..-|||||+..|+.. .|.+...-.. .+...+...+....+.++|.|||||-+|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 458999999999999999999853 2322111000 1111222233344488999999999999999
Q ss_pred ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-
Q 029215 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL- 149 (197)
Q Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (197)
..+.+.-+|++++++|+.++.-.+.- ..+...-+. +.+-|+|+||+|....+. ..-.++...+...
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTr--FVlkKAl~~--gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L 151 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTR--FVLKKALAL--GLKPIVVINKIDRPDARP---------DEVVDEVFDLFVEL 151 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchh--hhHHHHHHc--CCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHh
Confidence 99999999999999999987544432 333333333 778899999999977543 0122333333333
Q ss_pred ------hCCCeEEEeccCCCC----------CHHHHHHHHHHHHcCCc
Q 029215 150 ------IGSPAYIECSSKTQQ----------NVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 150 ------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~ 181 (197)
+.+ |++..|+.+|. ++..+|+.|++.+..+.
T Consensus 152 ~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 152 GATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 344 88889998753 68999999999988775
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=2.1e-12 Score=94.86 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=73.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---c-------c
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~ 71 (197)
...++|+|+|.+|+|||||+|.+++.... ....+++..........++ ..+++|||||...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 35799999999999999999999986542 2233333222223333455 5678999999765421 0 1
Q ss_pred cCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCc
Q 029215 72 PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK 126 (197)
Q Consensus 72 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~ 126 (197)
..++. ..|++++|..++.. .+......+++.+...+. -.++++|.|++|.....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 11222 47888888766542 121221244444544331 25799999999997544
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.42 E-value=6e-12 Score=99.58 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=110.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEE-EEE--CCeEEEEEEEEcCCcccccccccCCCCC----C
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRG----A 78 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~----~ 78 (197)
.-.|+|+|..++|||||+.+|.+.. ...++....|... +.- .+...++.+|-+.|...+..+....+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 3589999999999999999987543 2233333333221 111 2234578899998876666665444432 3
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHhhh-------------------------C-------------------------
Q 029215 79 DVFILAFSLISKASYENVAKKWIPELRHY-------------------------A------------------------- 108 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------~------------------------- 108 (197)
-.+++|+|.+.++.+-+-+..|+..++.+ .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 57888999999876643334443322211 0
Q ss_pred ---C----------CCCEEEEeecCCccCCccccc-CCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHH
Q 029215 109 ---P----------GVPIILVGTKLDLRDDKQFFI-DHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 109 ---~----------~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (197)
| ++|++||++|+|....-.... -.+.........++.++-.+|. .++.+|++...+++-++.+|.
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHH
Confidence 0 269999999999865321100 0011111233456778888998 899999999999999999999
Q ss_pred HHHcCCc
Q 029215 175 KVVLQPP 181 (197)
Q Consensus 175 ~~~~~~~ 181 (197)
+.+....
T Consensus 261 h~l~~~~ 267 (472)
T PF05783_consen 261 HRLYGFP 267 (472)
T ss_pred HHhccCC
Confidence 9887654
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.42 E-value=3.6e-12 Score=92.62 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=82.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.....|+++|.+|+|||||++.+....-........+. + .+ .......+.++||||.. ..+ ....+.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 34678999999999999999998764211110000011 1 11 11223567799999864 111 123567999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccCCcccccCCCCCccccHHHHHH-HHH-HhCCCeEEEecc
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-LRK-LIGSPAYIECSS 160 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa 160 (197)
++|++....... ..++..+... +.|.+ +|+||.|+.+... .......+++. +.. .....+++.+||
T Consensus 110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 999986544333 2444555544 67854 5999999864321 00001122222 322 234458999999
Q ss_pred CCC
Q 029215 161 KTQ 163 (197)
Q Consensus 161 ~~~ 163 (197)
++.
T Consensus 179 ~~~ 181 (225)
T cd01882 179 IVH 181 (225)
T ss_pred ccC
Confidence 986
No 290
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=95.35 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=57.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 68 (197)
..++|+++|.|+||||||+|+|++... ..+++.++.......+.+.+. ...+.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 468999999999999999999987543 445666664444444443322 2347899999965322
Q ss_pred c----cc---cCCCCCCcEEEEEEeCC
Q 029215 69 R----LR---PLSYRGADVFILAFSLI 88 (197)
Q Consensus 69 ~----~~---~~~~~~~~~~i~v~d~~ 88 (197)
+ +. -..++++|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 11 12357899999999974
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.40 E-value=3e-12 Score=97.22 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=67.1
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
.+.+.|+||+|....... ....+|.++++.+...++..+..... .+ ...-++|+||+|+.....
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~----- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTA----- 211 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhH-----
Confidence 367889999997532221 35579999999875555555544211 11 223489999999865321
Q ss_pred CCCccccHHHHHHHHHHh------CCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 133 PGAVPITTAQGEELRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
......+........ ...|++.+||+++.|++++++.+.+.+.
T Consensus 212 ---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 212 ---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001112222222211 1258999999999999999999999754
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.40 E-value=9.4e-12 Score=95.54 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=98.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC----CC-------------CCCCCC----ceeecee--EEEE---ECCeEEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN----TF-------------PTDYVP----TVFDNFS--ANVV---VDGSTVNLGLW 59 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~----~~-------------~~~~~~----t~~~~~~--~~~~---~~~~~~~l~i~ 59 (197)
.+.|.|+|+.++|||||+++|++. .. +....+ |+...+. ..+. .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 588999999999999999999976 22 122222 2233330 1222 23555778899
Q ss_pred EcCCccccccc-----------------------------ccCCCC-CCcEEEEEE-eCC----CHhHHHHHHHHHHHHH
Q 029215 60 DTAGQEDYNRL-----------------------------RPLSYR-GADVFILAF-SLI----SKASYENVAKKWIPEL 104 (197)
Q Consensus 60 D~~G~~~~~~~-----------------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~ 104 (197)
||+|...-..+ ....+. .+++.++|. |.+ .++.+......++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99994321111 111233 688888888 664 1234445557888888
Q ss_pred hhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC--CCCHHHHHHHHHHH
Q 029215 105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT--QQNVKAVFDAAIKV 176 (197)
Q Consensus 105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~~ 176 (197)
.+. ++|+++++|+.|.... ........+...++. |++.+|+.. .+.+..+++.+.-.
T Consensus 177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 888 9999999999994321 133344566677886 777777765 34555555555443
No 293
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.2e-11 Score=92.25 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=104.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC----CCCCCCCCce-e----eceeEEE------EECCeEEEEEEEEcCCccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTV-F----DNFSANV------VVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~----~~~~~~~~t~-~----~~~~~~~------~~~~~~~~l~i~D~~G~~~~~ 68 (197)
+..+++.++|...||||||.+++..- .|....+++. + .-++... ...++++.+.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 34699999999999999999999753 2322222222 1 1111111 124567888999999986432
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
........-.|..++|+|+..+..-+.....++..+. -...++|+||+|..++.++ ..-..+.++.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr-------~ski~k~~kk~~K 153 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQR-------ASKIEKSAKKVRK 153 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhh-------hhHHHHHHHHHHH
Confidence 2222222346889999999887655555344444433 2346788899888765431 0112223333333
Q ss_pred Hh------CCCeEEEeccCCC----CCHHHHHHHHHHHHcCCchh
Q 029215 149 LI------GSPAYIECSSKTQ----QNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 149 ~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~ 183 (197)
.+ |..|++++||+.| +++.++.+.+-..+..+.+.
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 32 3358999999999 77888888888887766543
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=2.1e-11 Score=87.56 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=85.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC---------C---CCCCceeece-eEEEEE-CC------------------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---------T---DYVPTVFDNF-SANVVV-DG------------------ 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---------~---~~~~t~~~~~-~~~~~~-~~------------------ 51 (197)
.....|.++|+.|+|||||++++...... + .......... ...+.. ++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 45788999999999999999988753110 0 0000000000 001111 11
Q ss_pred -eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215 52 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 52 -~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 130 (197)
....+.++++.|.-.... .+....+..+.|+|+.+.+..... .... . ..|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~---~--~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK---YPGM---F--KEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh---hHhH---H--hhCCEEEEEHHHccccch---
Confidence 124566788888211111 111134556678888765432111 1111 1 567899999999965321
Q ss_pred CCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 131 DHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
.......+..+.. ...+++++||+++.|++++++++.+.
T Consensus 166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1223333333333 33489999999999999999999874
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=1.5e-12 Score=110.55 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=79.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCce------------eece---eEEEEE--------------CCe
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV------------FDNF---SANVVV--------------DGS 52 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~------------~~~~---~~~~~~--------------~~~ 52 (197)
.+.-+|+|+|+.++|||||+++|+...- ......+. +..+ ...+.+ .+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3567999999999999999999875321 11100000 0000 011111 123
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
.+.++++||||+.+|.......++.+|++++|+|+..+-..... ..| ..+... ++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~-~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHH-HHHHHC--CCCEEEEEECCccc
Confidence 57889999999999988777888899999999999887554443 333 333334 79999999999987
No 296
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.37 E-value=1.8e-11 Score=91.39 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=68.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCC----------CCce-eeceeEEEEECCeEEEEEEEEcCCcccc------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------ 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~------ 67 (197)
-.|+|+|+|.+|+|||||+|.|+........ ..+. .......+..++..+.+.++||||.-..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986543221 0111 1122334455778899999999992211
Q ss_pred ------------c-------ccccCCC--CCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 68 ------------N-------RLRPLSY--RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 68 ------------~-------~~~~~~~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
. ...+... ...|+++|.++.+... +-.++ ..++.+.. .+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~---~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSK---RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhcc---cccEEeEEecccccCH
Confidence 0 0011111 2479999999987531 22232 34444444 5889999999998543
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=3.2e-12 Score=97.83 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=83.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCC-CCCce--eece-eEEEEECCeEEEEEEEEcCCcc--cccc---cccCCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNF-SANVVVDGSTVNLGLWDTAGQE--DYNR---LRPLSY 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~t~--~~~~-~~~~~~~~~~~~l~i~D~~G~~--~~~~---~~~~~~ 75 (197)
.+++|+|+|.+|+|||||||.|.+-.-.++ ..++. ++.. ...+.. ...-.+.+||+||.. .|.. +...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 468999999999999999999975322211 11111 1111 122222 221246699999953 2211 112234
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc--CCcccccCCCCCccccHHHHHHHHHH----
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPITTAQGEELRKL---- 149 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (197)
..-|.+|++.+- .|....-.+...++.. ++|+.+|-+|+|.. ..+...+. .-.......++++-+..
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~-~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPR-TFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-ST-T--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCc-ccCHHHHHHHHHHHHHHHHHH
Confidence 567887776653 2333334556677777 89999999999962 11100000 00001111222222222
Q ss_pred h--CCCeEEEeccCCC--CCHHHHHHHHHHHHcCCchh
Q 029215 150 I--GSPAYIECSSKTQ--QNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 150 ~--~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~~ 183 (197)
. ..+++|-+|+.+- .+...+.+.+.+.+..+++.
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 1 3347888999874 56888889998888766543
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.36 E-value=1.3e-11 Score=103.69 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=77.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCC-ce---------------e-eceeEEEEECCeEEEEEEEEcCCcc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVP-TV---------------F-DNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~-t~---------------~-~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
+.-+|+++|+.++|||||+++|+... ......+ +. . .........++..+.++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45689999999999999999997532 1110000 00 0 0001111224446788999999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
+|.......++.+|++++|+|+..+...+.. ..|. ..... +.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence 9887777788899999999999876444333 3333 22333 578899999999863
No 299
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=2.3e-11 Score=92.05 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=86.3
Q ss_pred EEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH----------HHHHHHHHHHHhh-hC-CCCCE
Q 029215 46 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY----------ENVAKKWIPELRH-YA-PGVPI 113 (197)
Q Consensus 46 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~-~~-~~~p~ 113 (197)
.+.+.+ ..+.++|++||...+.-|.+.+.++++++||+++++-+.. .+. ..+...+-+ .. .++++
T Consensus 189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS-~~LF~sI~n~~~F~~tsi 265 (354)
T KOG0082|consen 189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES-LKLFESICNNKWFANTSI 265 (354)
T ss_pred EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH-HHHHHHHhcCcccccCcE
Confidence 344455 6677999999998889999999999999999999874322 222 122223322 22 68999
Q ss_pred EEEeecCCccCCcccc-----cCCCCCccccHHHHHHHHH-----HhCC--Ce--EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 114 ILVGTKLDLRDDKQFF-----IDHPGAVPITTAQGEELRK-----LIGS--PA--YIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 114 iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~--~~--~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++++||.|+.++.... .-.+-......+++..+.+ .+.. .+ +..+.|.+..+|+.+|+.+.+.+..
T Consensus 266 iLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 266 ILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred EEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 9999999997653321 0000011123334433322 2211 12 2347888889999999999998877
Q ss_pred Cchh
Q 029215 180 PPKQ 183 (197)
Q Consensus 180 ~~~~ 183 (197)
.+-+
T Consensus 346 ~nlk 349 (354)
T KOG0082|consen 346 NNLK 349 (354)
T ss_pred HHHH
Confidence 6644
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=2.3e-12 Score=109.29 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=78.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCcee--ec----------e---eEEEEEC--------CeEEEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVF--DN----------F---SANVVVD--------GSTVNLGLW 59 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~--~~----------~---~~~~~~~--------~~~~~l~i~ 59 (197)
+.-+|+++|+.++|||||+++|+... ......++.. +. + ...+.+. +..+.++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 45699999999999999999998531 1111111100 00 0 0111222 225678899
Q ss_pred EcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
||||+.+|.......++.+|++++|+|+.++-..+.. ..+..+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 9999998887777788899999999999887544443 333444444 78999999999996
No 301
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.34 E-value=4.1e-11 Score=86.35 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=92.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCC---CCceeeceeEEEEECCeEEEEEEEEcCCccccccc--------c---c
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------R---P 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~---~ 72 (197)
++|+|+|..|+||||++|.+++....... .+.+..........++ ..+.++||||..+.... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987653322 1222222233446677 45669999995332211 0 1
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccCCcccccCCCCCcccc----HHHHHH
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPIT----TAQGEE 145 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~ 145 (197)
......|++++|+.+... +-.+ ...+..+...+. -..++||.|..|...... ..... ....+.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-------~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS-------LEDYLKKESNEALQE 148 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-------HHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc-------HHHHHhccCchhHhH
Confidence 123568999999998832 2111 222233333221 245888888888765431 00011 123556
Q ss_pred HHHHhCCCeEEEeccC------CCCCHHHHHHHHHHHHcCCc
Q 029215 146 LRKLIGSPAYIECSSK------TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 146 ~~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~~ 181 (197)
+.+..+. .|+..+.+ ....+.++++.+-+.+....
T Consensus 149 li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 149 LIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 6777776 77777766 33567888888777765543
No 302
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=3.3e-11 Score=79.30 Aligned_cols=113 Identities=26% Similarity=0.371 Sum_probs=77.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCC-CceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
+|++++|..|+|||+|+.++....+...+. ++.. +........+.++.+++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777654332 2222 2223344566789999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQ 164 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (197)
+.++.+++... |...+.... .+.|.++++||.|+.+... +..++. . +++++|++++.
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~--------~-~~~~~s~~~~~ 112 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEG--------L-EFAETSAKTPE 112 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHH--------H-HHHHHhCCCcc
Confidence 99999988654 555554433 4788999999999843211 222222 2 45577888888
Q ss_pred CHH
Q 029215 165 NVK 167 (197)
Q Consensus 165 ~i~ 167 (197)
|+.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 874
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=2.3e-10 Score=82.05 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=105.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYR 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~ 76 (197)
-.-+|+++|.|.+|||||+..++.... ...|..|+.+.++..+.+++ -.+++.|+||.-+-.+.- ....+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 457899999999999999999986543 35677777777888888888 456799999964433221 22346
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHh----hhCCC------------------------------------------
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELR----HYAPG------------------------------------------ 110 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~------------------------------------------ 110 (197)
.||.+++|.|++..+.-....+.-++.+- ...|+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 79999999999876544332222222111 11111
Q ss_pred --------------------CCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215 111 --------------------VPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 111 --------------------~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (197)
++++-|-||+|. ++.++..+++++-+. +.+|+....|++.++
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll 280 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL 280 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence 244445555554 677888888887654 567888889999999
Q ss_pred HHHHHHHc
Q 029215 171 DAAIKVVL 178 (197)
Q Consensus 171 ~~i~~~~~ 178 (197)
+.+.+.+.
T Consensus 281 e~iWe~l~ 288 (364)
T KOG1486|consen 281 ERIWEELN 288 (364)
T ss_pred HHHHHHhc
Confidence 99998764
No 304
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=4e-12 Score=89.68 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=81.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-----cccccCCCCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRG 77 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~~ 77 (197)
..-||+++|.+|+|||++-..++.+-.. ....+.+.+....+...-| ++.+++||++||+.+ .......+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3468999999999999998777654321 1111111222222333323 267889999999844 2345667899
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccCC
Q 029215 78 ADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+++++|||++..+-..++ ..+ ++.+.++.|...+++..+|+|+...
T Consensus 82 V~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred heeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 9999999999998766665 333 4556666688889999999999764
No 305
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=3e-10 Score=87.06 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=56.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeE---------------EEEEEEEcCCcccccc-
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNR- 69 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~- 69 (197)
++|+++|.|++|||||+|++++... ..+++.|+.......+.+.+.. ..+.+.|+||...-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998653 3455666544443333333321 2578999999653211
Q ss_pred ---c---ccCCCCCCcEEEEEEeCC
Q 029215 70 ---L---RPLSYRGADVFILAFSLI 88 (197)
Q Consensus 70 ---~---~~~~~~~~~~~i~v~d~~ 88 (197)
+ .-..++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 122357899999999984
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=2e-11 Score=84.86 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=45.6
Q ss_pred EEEEEEcCCccc----ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215 55 NLGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (197)
Q Consensus 55 ~l~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (197)
.+.|+||||... ....+..+++.+|++++|.+++...+-.+. ..+.+..... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 467999999643 224456677899999999999987665555 6666666666 45589999984
No 307
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.27 E-value=9.3e-12 Score=97.58 Aligned_cols=161 Identities=26% Similarity=0.386 Sum_probs=124.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..+|+.|+|..++|||+|+.+++.+.|..... ..+..+...+...+....+.+.|.+|... ..+-.++|++|||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 46899999999999999999999998865533 44566777777888888888999888432 2345678999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|.+.|..+|+.+ ..+...+..+. ..+|+++++++.-..... .+.+..+.+..++..+....+|++++.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999998 66665665544 478888888775544322 2335566666776666656999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.+++.+|+.+...+...
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999998877654
No 308
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.6e-11 Score=91.59 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=80.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh--hCCCCC---------------CCCCce----eeceeEEEEECCeEEEEEEEEcCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYT--SNTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~--~~~~~~---------------~~~~t~----~~~~~~~~~~~~~~~~l~i~D~~G 63 (197)
+.-..+|+-+|.+|||||-..|+ ++.+.. ++.... ....+..+..+...+.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34567899999999999998875 222210 000000 111233444555568889999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
|++|+.-.-+.+..+|.+++|+|+..+-..+.. .+++..+-. ++|++-++||.|-..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeecccccc
Confidence 999987766677889999999999876444443 555555554 999999999999743
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.22 E-value=1e-10 Score=88.59 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=63.2
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
.+.+.|+||+|.-... ......+|.++++.+....+.+... ...+. ++|.++|+||+|+.....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~----~~~l~----~~~~ivv~NK~Dl~~~~~----- 189 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI----KAGLM----EIADIYVVNKADGEGATN----- 189 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH----HHHHh----hhccEEEEEcccccchhH-----
Confidence 4778899999853211 1235567888887554433332222 22222 678899999999975421
Q ss_pred CCCccccH--H----HHHHHHHH-hCC-CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 133 PGAVPITT--A----QGEELRKL-IGS-PAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 133 ~~~~~~~~--~----~~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
... . ....+... .++ .+++++||+++.|++++++++.+...
T Consensus 190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 0 00111111 111 36899999999999999999988643
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=2.6e-10 Score=78.90 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=63.8
Q ss_pred EEEEEEEcCCcccccccccCCCC-CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
..+.|++..| ..- .+.... ..+.-|+|+|++.++.... +..+.+ -..=++|+||.|+.+.-.
T Consensus 97 ~Dll~iEs~G-NL~---~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~v~----- 159 (202)
T COG0378 97 LDLLFIESVG-NLV---CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPYVG----- 159 (202)
T ss_pred CCEEEEecCc-cee---cccCcchhhceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHHhC-----
Confidence 4566777777 111 111122 2348899999988753221 100111 113389999999987643
Q ss_pred CCCccccHHHHHHHHHH-hCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 133 PGAVPITTAQGEELRKL-IGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.+.+...+-+++ .+..+++++|+++|.|++++++|+...+
T Consensus 160 -----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 -----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred -----ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 444555555554 4555899999999999999999987754
No 311
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.4e-10 Score=91.68 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=94.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce-e---eceeEEEEECCeEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV-F---DNFSANVVVDGSTV 54 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~-~---~~~~~~~~~~~~~~ 54 (197)
..++++++|...+|||||+.+++.. .... +..... + +-......++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 5789999999999999999887632 1100 000000 0 00111222334457
Q ss_pred EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
.+.+.|.||+-.|-..+.....+||+.++|+|++-.+.-..+ ..+....++.. .-..++|++||+|+.+=.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq-- 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ-- 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH--
Confidence 788999999999988887788899999999999765322111 12222222222 1345788999999976211
Q ss_pred cCCCCCccccHHHHHHHH-HHhCC----CeEEEeccCCCCCHHHH
Q 029215 130 IDHPGAVPITTAQGEELR-KLIGS----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~ 169 (197)
+ ...........|. +..|+ ..++++|+..|+|+-..
T Consensus 333 ---~-RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 ---D-RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ---H-HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 0 0001112223333 33332 26899999999997544
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.9e-10 Score=95.01 Aligned_cols=118 Identities=21% Similarity=0.195 Sum_probs=83.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC--CCCC--C-CCC-ce----------e-eceeE--EEEECCeEEEEEEEEcCC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT--D-YVP-TV----------F-DNFSA--NVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~--~-~~~-t~----------~-~~~~~--~~~~~~~~~~l~i~D~~G 63 (197)
..+.-+|.++|+..+|||||..+++.. .... . ..+ +. + +..+. .+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 346789999999999999999998732 1110 0 000 00 0 01111 222332 47889999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
|-+|.....+.++-+|++++|+|+..+-..+.- .-|.+ ...+ ++|.++++||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rq-a~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQ-ADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHH-Hhhc--CCCeEEEEECcccccc
Confidence 999999988999999999999999987655554 44443 3444 7999999999998754
No 313
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.5e-10 Score=87.85 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=101.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCC----CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFP----TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.|+..|.-.-|||||+..+.+..-. ....+++.+.--.. .......+.|+|.||++++-+..-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y--~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY--RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe--ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4788899999999999999875421 11222222221112 22233477899999999987766666677899999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hCCCeEEEecc
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IGSPAYIECSS 160 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa 160 (197)
|++.++.-..+.. +-+..+.-. ++ ..++|+||+|..++.. .....++.... +...+++.+|+
T Consensus 80 vV~~deGl~~qtg--EhL~iLdll--gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~ 144 (447)
T COG3276 80 VVAADEGLMAQTG--EHLLILDLL--GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSA 144 (447)
T ss_pred EEeCccCcchhhH--HHHHHHHhc--CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccccc
Confidence 9999766444443 222233322 34 4599999999976421 11111222222 44457899999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 029215 161 KTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~ 178 (197)
++|+||+++.+.|.+...
T Consensus 145 ~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 145 KTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999999885
No 314
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.8e-10 Score=81.70 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=104.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC----------CCCC-CCCCc------eeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-DYVPT------VFDNFSANVVVDGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~----------~~~~-~~~~t------~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (197)
+.+.+|..+|.-.-|||||.-.++.- .|.. +..|. +...-...+....+.|. ..|+||+.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence 46799999999999999999766531 1100 00111 11111223334454454 899999998
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
|-..+.....+.|+.|+|++++|..-.+.....+ ..++. +.|. ++++||+|+.++.+ ....-..+.++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv--Gvp~ivvflnK~Dmvdd~e-------llelVemEvre 156 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV--GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRE 156 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc--CCcEEEEEEecccccCcHH-------HHHHHHHHHHH
Confidence 8776666667899999999999987666552322 22233 6765 56679999987543 12234457778
Q ss_pred HHHHhCCC----eEEEeccCCC-C-------CHHHHHHHHHHHHcCCc
Q 029215 146 LRKLIGSP----AYIECSSKTQ-Q-------NVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 146 ~~~~~~~~----~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~~ 181 (197)
+...++++ |++.-||..- + .|.++++.+-..+..+.
T Consensus 157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 88888763 5666666531 2 25666666666665554
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.13 E-value=5.7e-10 Score=81.28 Aligned_cols=69 Identities=23% Similarity=0.174 Sum_probs=45.2
Q ss_pred EEEEEEEcCCcccc-------------cccccCCCC-CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215 54 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119 (197)
Q Consensus 54 ~~l~i~D~~G~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (197)
..+.++||||.... ..+...+++ ..+++++|+|+.....-.+. ..+...+... +.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 56789999997422 112344556 45699999998654332232 2444444444 8999999999
Q ss_pred CCccCC
Q 029215 120 LDLRDD 125 (197)
Q Consensus 120 ~D~~~~ 125 (197)
.|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 999754
No 316
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=6.6e-10 Score=82.60 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=81.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC-------CCCCceee--ce----eEEEEEC--------------------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-------DYVPTVFD--NF----SANVVVD-------------------- 50 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~t~~~--~~----~~~~~~~-------------------- 50 (197)
...+-+.|+|++|+|||||++++....... ....+..+ .+ ...+.++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 456789999999999999998877531111 00011100 00 0011111
Q ss_pred CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 130 (197)
.....+.|+++.|.-...... .+ ..+.-+.++++...+.. . ..+-..+ ..+-++|+||+|+.+...
T Consensus 182 ~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk--p-lKyp~~f-----~~ADIVVLNKiDLl~~~~--- 247 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK--P-LKYPHMF-----AAASLMLLNKVDLLPYLN--- 247 (290)
T ss_pred hcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc--c-hhccchh-----hcCcEEEEEhHHcCcccH---
Confidence 112344566666641111100 11 12334566777644221 1 1111111 456799999999975311
Q ss_pred CCCCCccccHHHHHHHH-HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 131 DHPGAVPITTAQGEELR-KLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...+...+.. +.....+++++||++|.|++++++||.+.
T Consensus 248 -------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 248 -------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred -------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 1233333333 33445589999999999999999999774
No 317
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7.8e-10 Score=81.95 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=103.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC---CCCCC----------CCCce-e--------eceeE--EEEEC----CeEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN---TFPTD----------YVPTV-F--------DNFSA--NVVVD----GSTVNL 56 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~---~~~~~----------~~~t~-~--------~~~~~--~~~~~----~~~~~l 56 (197)
..++|.++|+..-|||||...|.+- .+.++ |..+. . ..+.. ..... .-.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4799999999999999999888742 11110 00000 0 00000 00001 112356
Q ss_pred EEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215 57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 135 (197)
.|.|.|||+-.-+.+-+-..-.|++++|+.++.+ ...+.. +.+ ..+.-. .-..++++=||+|+...+.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~-EHl-~AleIi-gik~iiIvQNKIDlV~~E~-------- 157 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTR-EHL-MALEII-GIKNIIIVQNKIDLVSRER-------- 157 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchH-HHH-HHHhhh-ccceEEEEecccceecHHH--------
Confidence 6999999997666555555557999999999874 223332 212 111111 0346788889999975432
Q ss_pred ccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 136 VPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
....++++++|.+.- ...|++++||..+.|++-+++.|.+.+..+.
T Consensus 158 AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 158 ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 112455666666543 2238999999999999999999999987664
No 318
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.11 E-value=1.5e-09 Score=85.18 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 122 (197)
..+.++|++|+...+.-|.+++.+++++|||+++++- ..+.+....|-..+.... .++|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 4567999999998899999999999999999998652 234444344544444433 68999999999998
Q ss_pred cCCccccc-----CCCCC-cc--ccHHHHHHHHHHh--------C--C-CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 123 RDDKQFFI-----DHPGA-VP--ITTAQGEELRKLI--------G--S-PAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 123 ~~~~~~~~-----~~~~~-~~--~~~~~~~~~~~~~--------~--~-~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
........ .-+.. .. -+.+.+..+.... . . .-+..++|.+...+..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 54321110 00111 11 3445555544432 1 1 1234689999999999999987754
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.10 E-value=3e-09 Score=80.34 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=73.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCC----------CCCce-eeceeEEEEECCeEEEEEEEEcCCcccc---ccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY---NRL 70 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~---~~~ 70 (197)
..++|+++|++|+|||||+|.|++....+. ..++. .......+.-++..+.++++||||.-++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 479999999999999999999997644322 11222 1222334445678899999999993211 011
Q ss_pred ----------------------ccC-CC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 71 ----------------------RPL-SY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 71 ----------------------~~~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+. .+ ..+|+++|.+..+.. .+..+.-..+..+.. .+.+|-|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence 111 12 247889998886643 222222244455554 4778888899998543
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=99.10 E-value=6.5e-10 Score=84.09 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=65.1
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
..++|.+++|+|+.+++........|+..+... ++|+++|+||+|+.+.. .......+..+..+. +
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-~ 143 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-D 143 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-e
Confidence 488999999999988866555546777666554 89999999999996322 112233445556676 8
Q ss_pred EEEeccCCCCCHHHHHHHHH
Q 029215 155 YIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~ 174 (197)
++++||+++.|++++++.+.
T Consensus 144 v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEEeCCCCccHHHHHhhcc
Confidence 99999999999999998874
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1e-09 Score=78.25 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=72.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCC---------CCCCceeec-eeEEEEECCeEEEEEEEEcCCcccc---cc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---------DYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY---NR 69 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~---------~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~---~~ 69 (197)
....|+|+|+|.+|.|||||+|.++.....+ .++.|++.. ....+.-++..+.++++||||.-+. ..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 3457999999999999999999998643322 222333322 2345556788899999999993211 11
Q ss_pred c-----------------------ccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 70 L-----------------------RPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 70 ~-----------------------~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
. ....+. .+++++|.+..+.. ++.-+.-++++.+.+- +.++-|+-|+|..
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v---vNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV---VNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence 1 122233 36788888877654 2222222444444443 5677788899973
No 322
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.4e-09 Score=81.34 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=72.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCC--------CCC-ce-eeceeEEEEECCeEEEEEEEEcCCcccc-------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVP-TV-FDNFSANVVVDGSTVNLGLWDTAGQEDY------- 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~------- 67 (197)
..|+++++|++|.|||||+|.|+...+.++ ... +. -......+.-++..++|+++||||.-+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987654332 011 11 1222333444678899999999993211
Q ss_pred ------------------cccccCCCC--CCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 68 ------------------NRLRPLSYR--GADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 68 ------------------~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
..+.+..+. .+|+++|.+..+.. -..-++ ..+..+.. .+.+|-|+.|+|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~~---~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLSK---KVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHhc---cccccceeeccccCCH
Confidence 111222333 57899999887654 222222 33444433 5788888899998544
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.2e-10 Score=91.02 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=83.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-------------ecee-----EEE---EECCeEEEEEEEEcC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-------------DNFS-----ANV---VVDGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-------------~~~~-----~~~---~~~~~~~~l~i~D~~ 62 (197)
....++.++|+-+.|||+|+..|.....++....+.. ...+ ..+ ...++.+.+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3568999999999999999999986544322111110 0000 011 124677899999999
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
||-.|.......++.+|++++++|+-++-.+..- .++...-+. +.|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq~--~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQN--RLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHhc--cCcEEEEEehhHHH
Confidence 9999998888889999999999999988776654 333333333 79999999999963
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.08 E-value=4.6e-10 Score=79.61 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=65.4
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
+..++..+++.+|++++|+|+++...- |...+.....+.|+++|+||+|+.... ........+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence 466777889999999999999876421 111121122478999999999996432 222333333
Q ss_pred H-----HHhC--CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 147 R-----KLIG--SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 147 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
. +..+ ..+++++||+++.|++++++++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 2222 236899999999999999999998774
No 325
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=5.1e-10 Score=79.83 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=93.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccc-cc--ccCCCCCCcEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RL--RPLSYRGADVFI 82 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~--~~~~~~~~~~~i 82 (197)
..+|+++|...+||||+..-.+++..+.+...-..+.....-.+.+.-+.+++||.|||-.+- .. ....++.+.+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 356999999999999998766654322211100000000011122345789999999986543 22 234578899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHh---hhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh--CC-CeEE
Q 029215 83 LAFSLISKASYENVAKKWIPELR---HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI--GS-PAYI 156 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 156 (197)
||+|+.+. +.+....+...+. .-.+++.+-+.+.|.|-..+.-.. +.++.+-......++..- +. ..++
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki---etqrdI~qr~~d~l~d~gle~v~vsf~ 181 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI---ETQRDIHQRTNDELADAGLEKVQVSFY 181 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhh---hhHHHHHHHhhHHHHhhhhccceEEEE
Confidence 99998654 2222233333333 333788899999999976543210 000001000011111110 11 1344
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.+|- ....+-+.|..+++.+..+
T Consensus 182 LTSI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 182 LTSI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred Eeee-cchHHHHHHHHHHHHHhhh
Confidence 4554 4577999999999887654
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.5e-09 Score=78.08 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=57.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEEC----------------CeEEEEEEEEcCCccc--
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVD----------------GSTVNLGLWDTAGQED-- 66 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~----------------~~~~~l~i~D~~G~~~-- 66 (197)
.+++.++|.|+||||||+|.++..... .+|+.++.+.......+. -....+.|+|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987653 567776633322222111 1235688999998543
Q ss_pred --ccccccCC---CCCCcEEEEEEeCCC
Q 029215 67 --YNRLRPLS---YRGADVFILAFSLIS 89 (197)
Q Consensus 67 --~~~~~~~~---~~~~~~~i~v~d~~~ 89 (197)
-..+-..+ ++++|+++.|+++++
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23333333 578999999999864
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.07 E-value=3.4e-10 Score=77.73 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
+.+.++.++++|++++|+|++++....+ ..+...+... +.|+++|+||+|+.+... ......+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~------------~~~~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLEL--GKKLLIVLNKADLVPKEV------------LEKWKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHhC--CCcEEEEEEhHHhCCHHH------------HHHHHHHH
Confidence 3445566778999999999987643332 1232333322 789999999999853211 11111233
Q ss_pred HHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 148 KLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
...+. +++.+||+++.|++++++.+.+.+.
T Consensus 67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 33454 7899999999999999999988775
No 328
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.05 E-value=7.5e-09 Score=84.16 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=71.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------c---cc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------L---RP 72 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~---~~ 72 (197)
..++|+|+|.+|+||||++|.+++... .. ...+.+..........++ ..+.++||||...... + ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 357999999999999999999998653 22 211222222222233455 4677999999765321 0 11
Q ss_pred CCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccCC
Q 029215 73 LSYR--GADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDD 125 (197)
Q Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~ 125 (197)
.++. .+|++|+|..++.......- ..++..+...+ + -..+|||.|..|..+.
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 1222 47999999877533221111 24455555444 1 3467999999998864
No 329
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.03 E-value=8e-10 Score=80.15 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred EEEEEEEEcCC--cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc
Q 029215 53 TVNLGLWDTAG--QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 53 ~~~l~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 130 (197)
.+.+.|++|.| |.+.. ...-+|.+++|......+..+.+..-+++. +=++|+||+|......
T Consensus 121 G~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~--- 184 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR--- 184 (266)
T ss_dssp T-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH---
T ss_pred CCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH---
Confidence 36677888876 43322 234589999999887777666653333332 3389999999654432
Q ss_pred CCCCCccccHHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 131 DHPGAVPITTAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
...+.+....... .+|++.+||.++.|++++++.|.+..
T Consensus 185 --------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 185 --------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 2333333333221 25899999999999999999988753
No 330
>PRK12289 GTPase RsgA; Reviewed
Probab=99.02 E-value=2.6e-09 Score=82.15 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred ccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
.+.+..+.++|.+++|+|+.++. ....+ ..|+...... ++|+++|+||+|+..... ........
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~~--~ip~ILVlNK~DLv~~~~------------~~~~~~~~ 145 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAEST--GLEIVLCLNKADLVSPTE------------QQQWQDRL 145 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEEchhcCChHH------------HHHHHHHH
Confidence 44455688999999999998775 33333 5666555433 899999999999954321 12222333
Q ss_pred HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
..++. +++.+||+++.|++++++.+...
T Consensus 146 ~~~g~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 146 QQWGY-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HhcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence 45676 88999999999999999988653
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=3.1e-09 Score=80.04 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 74 SYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.+.++|.+++|+|+.++. ++..+ ..|+..+... ++|+++|+||+|+.+.. ............+.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g~ 139 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALALGY 139 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhCCC
Confidence 378899999999999887 77766 6677766655 89999999999996531 11122333344666
Q ss_pred CeEEEeccCCCCCHHHHHHHHHH
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
+++.+||+++.|+++++..+..
T Consensus 140 -~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 -PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999988764
No 332
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.7e-09 Score=79.47 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=99.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC--------------C--c--ee------eceeEEEEE----------CC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV--------------P--T--VF------DNFSANVVV----------DG 51 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~--------------~--t--~~------~~~~~~~~~----------~~ 51 (197)
.++++|+|...+|||||+--|+.+....... . | +. +.....+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5899999999999999997777654422100 0 0 00 000000111 11
Q ss_pred eEEEEEEEEcCCcccccccccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
....+.|+|++|+..|.......+. -.|..++|+++...-.... .+-+..+... ++|++++.+|+|+.......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 2345679999999998876655543 3788999999877644433 3445566666 99999999999998763221
Q ss_pred --------------cCCCCCccccHHHHHHHHHHh---CCCeEEEeccCCCCCHHHH
Q 029215 130 --------------IDHPGAVPITTAQGEELRKLI---GSPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 130 --------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~ 169 (197)
...-.++.-+.+++...+++. ++.|+|.+|+..|+|++-+
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 011111222445555555443 4568899999999998644
No 333
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.97 E-value=1.4e-09 Score=80.83 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=54.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeE---------------EEEEEEEcCCcccccc---
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNR--- 69 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~--- 69 (197)
|+++|.|+||||||+|++++... ..+++.++.......+.+.+.. ..++++|+||...-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998664 3455666544444444443321 2588999999653221
Q ss_pred -cc---cCCCCCCcEEEEEEeCC
Q 029215 70 -LR---PLSYRGADVFILAFSLI 88 (197)
Q Consensus 70 -~~---~~~~~~~~~~i~v~d~~ 88 (197)
+. -..++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 12356899999999874
No 334
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.96 E-value=1.2e-09 Score=82.88 Aligned_cols=171 Identities=17% Similarity=0.131 Sum_probs=101.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce--------------eeceeE---------EEEE-----------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNFSA---------NVVV----------- 49 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~--------------~~~~~~---------~~~~----------- 49 (197)
+.++.+.++|....|||||+-.|..+...+....+. ....+. .+..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 457899999999999999998887665533211110 000000 0000
Q ss_pred --CCeEEEEEEEEcCCcccccccccC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 50 --DGSTVNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 50 --~~~~~~l~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
...+-.+.|.||.|++.|.....+ .-+..|..++++.+++..+-..- +-+...... ..|++++.+|+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk--EHLgi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK--EHLGIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh--Hhhhhhhhh--cCCEEEEEEecccCcH
Confidence 111244569999999988654322 23568999999999998665443 334444444 8999999999999876
Q ss_pred ccccc-------------CCCCCccccHHH----HHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 126 KQFFI-------------DHPGAVPITTAQ----GEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 126 ~~~~~-------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
..... .-+... .+.+. +.......+..|+|.+|+.+|+|++-+ +.+...+.++
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~v-k~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~r 340 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIV-KDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceee-eccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCcc
Confidence 43210 000000 01111 111111223568999999999998644 4444444443
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.95 E-value=8.8e-09 Score=75.92 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=65.0
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDH 132 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 132 (197)
.+.+.|++|.|.-.... ....-+|.++++.-..-++..+....-+++ +.=++|+||.|.......
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a---- 207 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKA---- 207 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHH----
Confidence 46677888877422111 123457989988877777777766333332 234899999996544210
Q ss_pred CCCccccHHHHHHHHH-----HhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 133 PGAVPITTAQGEELRK-----LIGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.-....+.++.. ....+|++.+||..|+|++++++.+.+..
T Consensus 208 ----~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 208 ----ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ----HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 001111112211 11235789999999999999999988764
No 336
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.93 E-value=3.4e-09 Score=78.70 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=93.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC-CceeeceeEEEE-ECCeEEEEEEEEcCCcc---------cccccccCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVV-VDGSTVNLGLWDTAGQE---------DYNRLRPLS 74 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~---------~~~~~~~~~ 74 (197)
.--|.|+|..++|||||++.|+.-...+... ..+-+....... .++ ..+.+.||-|.- .|++.. ..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 4568999999999999999999654433211 112222222222 234 244588999932 122221 22
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
...+|.++-|.|++.+..-... ...+..++... +..| ++=|-||+|..+... . ...
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E~ 315 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EEK 315 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------ccc
Confidence 4579999999999999766555 66666666653 2222 455678888765431 0 112
Q ss_pred hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 150 IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++ .+.+||++|+|++++.+.+-..+..
T Consensus 316 n~---~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 316 NL---DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred CC---ccccccccCccHHHHHHHHHHHhhh
Confidence 22 4678999999999999887766543
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.89 E-value=5.6e-09 Score=81.00 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=68.7
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.....+.|+++|+||+|+.+.. ...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence 4567777777888999999999997653 23333443333478999999999996532 223333
Q ss_pred H----HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHH
Q 029215 144 E----ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 144 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
. ++++..+.. .++.+||++|.|++++++.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 345556652 48899999999999999999765
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=2e-08 Score=77.34 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.++|.+++|++++...++..+ ..|+...... ++|.++|+||+|+.+... ...........+..+. ++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~v 185 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-RV 185 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-eE
Confidence 569999999999877788777 7787655544 799999999999965321 0011222333445676 89
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 029215 156 IECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
+++||+++.|++++++.+...
T Consensus 186 ~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 186 LMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred EEEeCCCCcCHHHHHHHHhhC
Confidence 999999999999999998763
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=8.2e-09 Score=69.66 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
+++++|.+|+|||||+|++.+............+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999876532111111122233344444 4679999995
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=2.1e-08 Score=68.89 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=58.1
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
.++++|.+++|+|+.++..... ..+...+.....+.|+++|+||+|+.+... .......+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 4678999999999988633211 233334433333689999999999954321 11122222222222
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
..+.+||+.+.|++++.+.+.+.+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357799999999999999997764
No 341
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=74.39 Aligned_cols=164 Identities=16% Similarity=0.040 Sum_probs=90.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC-ceeece-eEEEEECCeEEEEEEEEcCCc----------ccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNF-SANVVVDGSTVNLGLWDTAGQ----------EDYNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-t~~~~~-~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 71 (197)
....+++++|-+++|||+|++.++.......... ..+... ...+.+. ..+.+.|.||. .++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999987643222111 222111 1222222 35568999991 1222233
Q ss_pred cCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 72 PLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 72 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..++. +.--+++.+|++-+-.-.+. ..++.+.+. ++|+.+|.||||...........+.... ......+.+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i--~~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNI--KINFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccc--eeehhhccc
Confidence 33332 33345566677654222221 223344445 8999999999998754331111111000 001112222
Q ss_pred Hh--CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 149 LI--GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 149 ~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
.. ..+|.+.+|+.++.|++.++-.|.+.
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 11 12366779999999999888777654
No 342
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.79 E-value=6.4e-08 Score=73.55 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=68.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCC------------------CCCCceee--------------------ceeEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------------------DYVPTVFD--------------------NFSANV 47 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~t~~~--------------------~~~~~~ 47 (197)
..+++|+|...+|||||+--|+++++.. ...++.+. ...+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 5799999999999999996665443311 00000000 011111
Q ss_pred EECCeEEEEEEEEcCCcccccccccC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 48 VVDGSTVNLGLWDTAGQEDYNRLRPL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 48 ~~~~~~~~l~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
...+....+.|+|++|++.|....-. .-+-.|...+++-++-.-- .+..+-+...... .+|+++|.+|+|+.+.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLALaL--~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLALAL--HVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence 11223346779999999998764322 2244677788777654321 1112222222223 7999999999999886
Q ss_pred c
Q 029215 126 K 126 (197)
Q Consensus 126 ~ 126 (197)
+
T Consensus 289 N 289 (641)
T KOG0463|consen 289 N 289 (641)
T ss_pred H
Confidence 5
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2e-08 Score=76.01 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=74.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce--eeceeEEEEE------CC---------------------------
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVV------DG--------------------------- 51 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~--~~~~~~~~~~------~~--------------------------- 51 (197)
-=|+++|.-..|||||++-|+.+.+++...+.. .+++...+.- .|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 458999999999999999999988764322211 1122111110 00
Q ss_pred ------eEEEEEEEEcCCccc-----------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEE
Q 029215 52 ------STVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII 114 (197)
Q Consensus 52 ------~~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 114 (197)
..-.+.++||||.-. |......+.+.+|.++++||+-..+--++. ...+..++.+ .-.+-
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIR 215 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeE
Confidence 023567999999432 222233455789999999998665444444 5555666655 56678
Q ss_pred EEeecCCccCCc
Q 029215 115 LVGTKLDLRDDK 126 (197)
Q Consensus 115 iv~nK~D~~~~~ 126 (197)
||+||.|..+.+
T Consensus 216 VVLNKADqVdtq 227 (532)
T KOG1954|consen 216 VVLNKADQVDTQ 227 (532)
T ss_pred EEeccccccCHH
Confidence 899999987653
No 344
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.73 E-value=9.1e-07 Score=68.58 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=96.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-----------------CC----CCCCceeecee----EEEEE-CCeEEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-----------------PT----DYVPTVFDNFS----ANVVV-DGSTVNLGLW 59 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~----~~~~t~~~~~~----~~~~~-~~~~~~l~i~ 59 (197)
-+-+.|+||..+|||||+.||+.-.. +. ....|++..+. ..+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 47799999999999999999985322 11 12222233331 23333 4667899999
Q ss_pred EcCCc--------cc--ccc----cc---------------cCCCCC-C-cEEEEEEeCC--C--HhHHHHHHHHHHHHH
Q 029215 60 DTAGQ--------ED--YNR----LR---------------PLSYRG-A-DVFILAFSLI--S--KASYENVAKKWIPEL 104 (197)
Q Consensus 60 D~~G~--------~~--~~~----~~---------------~~~~~~-~-~~~i~v~d~~--~--~~s~~~~~~~~~~~~ 104 (197)
|+.|- .+ -.. -| +..+.. + =++++.-|.+ + ++.+..+.+..+..+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99881 10 000 01 111222 2 2444444542 2 566777767778888
Q ss_pred hhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC--CCCHHHHHHHHHH
Q 029215 105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT--QQNVKAVFDAAIK 175 (197)
Q Consensus 105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~ 175 (197)
.+. ++|.++++|-.+-... .....+.++..+|+. |++++++.. .+.+..+++.++-
T Consensus 177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHh
Confidence 888 9999999998886543 356677788888997 888887765 3445555554443
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=4.7e-08 Score=67.16 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=35.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
..++++++|.+|+|||||+|++.+... ....++++.. ...+...+ .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcCC
Confidence 467899999999999999999987543 2233333321 11222222 2569999993
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.71 E-value=5.1e-08 Score=67.86 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
.++++++|.|++|||||+|++.+... ....++++... ..+..+. .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence 48999999999999999999997653 23333333221 1222222 4679999993
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.70 E-value=1.6e-07 Score=64.44 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHH-HHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 79 DVFILAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
|++++|+|+.++.+.... .+. ..+... +.|+++|+||+|+.+... .......+....+ ..++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKEK--GKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhcC--CCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence 689999999887554422 222 233333 799999999999854211 0111112222333 36889
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029215 158 CSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (197)
+||+++.|++++.+.+.+..
T Consensus 65 vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EeccCCcChhhHHHHHHHHh
Confidence 99999999999999998764
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=1e-07 Score=66.45 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=36.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
..++++++|.+++|||||++++....+.. ....++.. ...+... ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999876521 22222211 1222232 24679999994
No 349
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=8.6e-08 Score=78.40 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCce------eec-------eeEEEEECCeEEEEEEEEcCCccc
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTV------FDN-------FSANVVVDGSTVNLGLWDTAGQED 66 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~------~~~-------~~~~~~~~~~~~~l~i~D~~G~~~ 66 (197)
..+..-+++++-+..-|||||...|.... +.....++. .+. .+..+..-...+.++++|+|||-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34567789999999999999998887421 111111111 000 111222323558899999999999
Q ss_pred ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (197)
|.+......+-+|++++++|+..+-..+.. ..+.+.+.+ +...++|+||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~~---~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWIE---GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHHc---cCceEEEEehhh
Confidence 999888888889999999999876444433 222222222 577899999999
No 350
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.4e-07 Score=68.74 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC----------CCCC-------CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~----------~~~~-------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.+.+++|.-+|...-|||||-..++.- .|.+ ...+.+.......+....+.|. =.|+||+.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence 456799999999999999999776631 1110 0111111111222333344443 67999999
Q ss_pred cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 145 (197)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
+|-..+..-..+.|+.|+|+.++|..-.+.-...++ ....-=..+++.+||.|+.++.+ ..++-+-++++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL---ArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE 198 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL---ARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE 198 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH---HHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence 988777777788999999999999866655422222 22211234677889999985532 22233446677
Q ss_pred HHHHhCC----CeEEEeccC---CCCC-------HHHHHHHHHHHHcCC
Q 029215 146 LRKLIGS----PAYIECSSK---TQQN-------VKAVFDAAIKVVLQP 180 (197)
Q Consensus 146 ~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~ 180 (197)
+...+|+ .|++.-||+ .|.+ |.++++.+-..+..+
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 7777764 367765554 4422 555555555555443
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.62 E-value=1.5e-07 Score=65.57 Aligned_cols=88 Identities=24% Similarity=0.153 Sum_probs=58.7
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+.++|.+++|+|++++...... .+...+ .+.|+++|+||+|+.+... .....+..+..+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~ 75 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------TKKWLKYFESKG 75 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------HHHHHHHHHhcC
Confidence 3456789999999999876443221 222222 2679999999999853211 111112222333
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
. .++.+||+++.|++++.+.+.+.+.
T Consensus 76 ~-~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 E-KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 3 6889999999999999999988763
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.62 E-value=1.9e-07 Score=71.92 Aligned_cols=82 Identities=17% Similarity=0.075 Sum_probs=56.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCcccccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~ 69 (197)
+++.++|.|++|||||++.++.... ..+|+.++.......+.+.+. ...+.+.|+||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 345555554443333444332 13577999999654221
Q ss_pred ----c---ccCCCCCCcEEEEEEeCC
Q 029215 70 ----L---RPLSYRGADVFILAFSLI 88 (197)
Q Consensus 70 ----~---~~~~~~~~~~~i~v~d~~ 88 (197)
+ .-..++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2 122467899999999985
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.61 E-value=1.6e-07 Score=70.41 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=37.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
..++++++|.||+|||||+|+|.+... ....++++.. ...+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 468999999999999999999987653 2233333221 22333332 3579999997
No 354
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=63.61 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
..++.+|++++|+|+.++.+..+ ..+...+.....+.|+++|+||+|+.+.. ......+..+..+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~ 72 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI 72 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence 35678999999999988765442 12333333222478999999999985432 12233444445564
Q ss_pred CeEEEeccCCCCC
Q 029215 153 PAYIECSSKTQQN 165 (197)
Q Consensus 153 ~~~~~~Sa~~~~~ 165 (197)
.++++||+++.+
T Consensus 73 -~ii~iSa~~~~~ 84 (141)
T cd01857 73 -VVVFFSALKENA 84 (141)
T ss_pred -eEEEEEecCCCc
Confidence 789999998753
No 355
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.60 E-value=5e-07 Score=65.48 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=55.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc-------cccCCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~ 78 (197)
-++.++|.|.+||||++..+.+..- ...+..|+-..+.......+ -.+++.|+||.-+-.. ......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4889999999999999998876432 33455555555555554555 4677999999543221 112234568
Q ss_pred cEEEEEEeCCCHhH
Q 029215 79 DVFILAFSLISKAS 92 (197)
Q Consensus 79 ~~~i~v~d~~~~~s 92 (197)
+.+++|.|+..+-+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 88899999866433
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.58 E-value=2.3e-07 Score=63.60 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=36.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
...+++++|.+++|||||++++..... ....++.+......+...+ ..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcCC
Confidence 457899999999999999999986542 2223333222222221122 25779999993
No 357
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.57 E-value=6.9e-08 Score=65.88 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=32.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC------C-CCCceeeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~------~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
-.++++|++|||||||+|.|....-.. . ..+...+.....+...+. -.++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 468999999999999999999763211 1 111111222333334332 2489999976543
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.57 E-value=3e-07 Score=69.37 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=37.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
..++++++|.++||||||+|+|.+... ....++++... ..+..++ .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 468999999999999999999998653 22333333221 2233332 36699999973
No 359
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.7e-07 Score=75.04 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=77.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC-CC---C--CCCCceeec-----------eeEEEEECCeEEEEEEEEcCCcccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FP---T--DYVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~---~--~~~~t~~~~-----------~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (197)
+.-+|.++-.-.+||||+-++++... .. + ....++.+. .+.......+.++++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 34567788888999999998876321 10 0 001111111 1111222233689999999999999
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.-...+.++-.|++++++|+..+-.-+.. .-|. .+..+ ++|.+..+||+|....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~r-Q~~ry--~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWR-QMKRY--NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhH-HHHH-HHHhc--CCCeEEEEehhhhcCC
Confidence 98888899999999999998776433333 3443 44555 8999999999997543
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=4.9e-07 Score=67.87 Aligned_cols=90 Identities=22% Similarity=0.119 Sum_probs=60.2
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...++.+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+... .....+..+..+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~------------~~~~~~~~~~~~ 77 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV------------TKQWLKYFEEKG 77 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH------------HHHHHHHHHHcC
Confidence 4457789999999999876443221 222222 2689999999999854211 111111222334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
. +++.+||+++.|++++.+.+.+.+...
T Consensus 78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 78 I-KALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 4 788999999999999999998887543
No 361
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.50 E-value=5.2e-07 Score=67.70 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECC---------------eEEEEEEEEcCCccccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------~~~~l~i~D~~G~~~~~ 68 (197)
+.+++.++|.|+||||||+|.|+.... ..+++.++.+.....+.+.. ....++++|++|.-.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 568999999999999999999998765 44555555443333333321 34678899999865432
Q ss_pred ----cccc---CCCCCCcEEEEEEeCCC
Q 029215 69 ----RLRP---LSYRGADVFILAFSLIS 89 (197)
Q Consensus 69 ----~~~~---~~~~~~~~~i~v~d~~~ 89 (197)
.+-. ..++.+|+++-|+++.+
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2222 34577999999998754
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.49 E-value=5.3e-07 Score=61.81 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=36.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
...+++++|.+|+|||||+|.+..... .....+++..... +... ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence 457899999999999999999997643 2223333322222 2222 24679999993
No 363
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=3e-07 Score=65.21 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
..+++++|.+|+|||||+|.|....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998753
No 364
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=4.7e-07 Score=69.28 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=37.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
..++++|+|.|+||||||||+|.+... ....++++ .-...+.++. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCc
Confidence 458899999999999999999998754 22222222 1122222333 2669999995
No 365
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=7.4e-07 Score=69.40 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=56.6
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH----HHHHHhCCC
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE----ELRKLIGSP 153 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 153 (197)
.+.+++|+|+.|.. ..|...+.....+.|+++|+||+|+.+.. ...+.+. .+++..+..
T Consensus 70 ~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~g~~ 132 (365)
T PRK13796 70 DALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKELGLR 132 (365)
T ss_pred CcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhcCCC
Confidence 34899999998743 23334444433478999999999996532 2223333 334555542
Q ss_pred --eEEEeccCCCCCHHHHHHHHHHH
Q 029215 154 --AYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 154 --~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
.++.+||+++.|++++++.+.+.
T Consensus 133 ~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999775
No 366
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=3e-07 Score=70.88 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~ 30 (197)
++++|.+|||||||+|+|....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999754
No 367
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.44 E-value=2.2e-07 Score=66.23 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=76.7
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC--CCCCEEEEeecC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA--PGVPIILVGTKL 120 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~ 120 (197)
.+.+.+.|.+|+...+.-|.++++++..++|++..+.. ...++. ..++..+-.+. .+.++++.+||-
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEechh
Confidence 35566888888877777777777777666666554432 222333 23334444433 589999999999
Q ss_pred CccCCcccc-----c-CCCCCccccHHHHHHHHHHh----C-C-Ce---EEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 121 DLRDDKQFF-----I-DHPGAVPITTAQGEELRKLI----G-S-PA---YIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 121 D~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~----~-~-~~---~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
|+.++.... + .+-..-..+...+++|...+ + . .. -..+.|.+.+|+.-+|..+.+++++.+-
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 998764331 0 00011112333444444332 1 0 01 1246778889999999999988876543
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.4e-06 Score=68.38 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=72.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.++-++|+||||+|||||++.|...-- . .|+...........+..-++.|.++|.+ ...+. ....-||.|++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t-k---~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT-K---QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH-H---hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEE
Confidence 3578899999999999999987765311 0 1111111222335667778889999943 22221 23345899999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCc
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDK 126 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~ 126 (197)
++|.+-+-..+.+ +++..+..+ +.| ++-|++..|+....
T Consensus 140 lIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 140 LIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred EeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence 9999876444554 566666666 555 45688999997653
No 369
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.6e-06 Score=67.91 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=72.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeec----------------------------------------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDN---------------------------------------- 42 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~---------------------------------------- 42 (197)
+...||++.|....||||++|.++...+.+ ...+++.-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 356899999999999999999998654422 111111000
Q ss_pred ---eeEEEEECCe-----EEEEEEEEcCCcc---cccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC
Q 029215 43 ---FSANVVVDGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV 111 (197)
Q Consensus 43 ---~~~~~~~~~~-----~~~l~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (197)
.-..+.++.. .=.+.++|.||.+ ...+....+..++|++|||.++.+.-+..+. .++....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence 0001111111 1145688888865 3334445566789999999999887665554 444444444 44
Q ss_pred CEEEEeecCCccCCc
Q 029215 112 PIILVGTKLDLRDDK 126 (197)
Q Consensus 112 p~iiv~nK~D~~~~~ 126 (197)
.++|+-||.|...+.
T Consensus 263 niFIlnnkwDasase 277 (749)
T KOG0448|consen 263 NIFILNNKWDASASE 277 (749)
T ss_pred cEEEEechhhhhccc
Confidence 566777888987653
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=3.8e-06 Score=64.12 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCccccccc--------c---cCC-CCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215 53 TVNLGLWDTAGQEDYNRL--------R---PLS-YRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 119 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~--------~---~~~-~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (197)
.+.+.++||||....... . ... -..++..++|.|++... .+... ..+... --+.-+|+||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~~~------~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFHEA------VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHHhh------CCCCEEEEEC
Confidence 467889999996432211 0 011 12467889999998653 22222 222211 1244788999
Q ss_pred CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (197)
.|.... ...+...+...+. |+..++ +|++++++-
T Consensus 269 lD~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 269 LDGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 996542 2345566677787 877777 677777654
No 371
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.41 E-value=2.2e-06 Score=62.33 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=54.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCC--CCCCCceeeceeEEEEEC-CeEEEEEEEEcCCccccccc------cc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~------~~ 72 (197)
.+..-|.|+|++++|||+|+|++++. .|. +...+++...+....... +....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 35677899999999999999999987 552 222333333333322221 23467889999997543221 11
Q ss_pred CCCCC--CcEEEEEEeCCCHh
Q 029215 73 LSYRG--ADVFILAFSLISKA 91 (197)
Q Consensus 73 ~~~~~--~~~~i~v~d~~~~~ 91 (197)
..+.. ++.+||..+.+...
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 12223 78888877765543
No 372
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-06 Score=63.63 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----------hHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~ 122 (197)
+.++.+|.+||...+.-|...+.+..++|||+..++- ..+.+.+..+...+.... ..+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 6688999999999999999999999999999987652 223333233333333222 46789999999998
Q ss_pred cCC
Q 029215 123 RDD 125 (197)
Q Consensus 123 ~~~ 125 (197)
...
T Consensus 282 lae 284 (379)
T KOG0099|consen 282 LAE 284 (379)
T ss_pred HHH
Confidence 544
No 373
>PRK01889 GTPase RsgA; Reviewed
Probab=98.39 E-value=2.1e-06 Score=66.61 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=58.2
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-HhCCC
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-LIGSP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (197)
..++|.+++|+++...-....+ ..++..+... ++|.++|+||+|+.+.. .+....+.. ..+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g~- 172 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPGV- 172 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCCC-
Confidence 4789999999999644333333 6666665555 88899999999996531 111222222 2344
Q ss_pred eEEEeccCCCCCHHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~ 174 (197)
+++.+|++++.|++++..++.
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 889999999999999998875
No 374
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.37 E-value=9.9e-06 Score=64.74 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=53.5
Q ss_pred EEEEEEEcCCccc-------------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120 (197)
Q Consensus 54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (197)
-++.+.|+||.-. ...+...+.++.+++|+|+--.+-+.-......+...+... +...|+|++|.
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeec
Confidence 3567899999321 12345667889999999984333222222224444444444 88899999999
Q ss_pred CccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 121 DLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
|+.+.+. -+++.+++....
T Consensus 490 DlAEknl----------A~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNV----------ASPSRIQQIIEG 508 (980)
T ss_pred chhhhcc----------CCHHHHHHHHhc
Confidence 9988754 456666665543
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=1.8e-06 Score=66.21 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=55.8
Q ss_pred EEEEEEEcCCccccccc-c---cCC--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215 54 VNLGLWDTAGQEDYNRL-R---PLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 127 (197)
+.+.++||+|....... . ... .-+.|.+++|.|++...........+...+ -+--+|+||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCCCCc-
Confidence 56889999996543211 1 111 125788999999976543222212222211 2347888999986532
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (197)
..+..++...+. |+..++ +|.+++++.
T Consensus 296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI 322 (336)
T ss_pred -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence 244455556676 777776 688887765
No 376
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=2.7e-05 Score=52.70 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=40.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~ 62 (197)
+..+||.+-|+|||||||++.++...--.. ..+....+...+..+++..-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 456899999999999999997776432111 123344556666677877888888887
No 377
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.6e-07 Score=67.70 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=72.7
Q ss_pred EEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
.+.|.|+||++..-+.+-....-.|++++++..+.. ...+.......-.+.. -..++++-||+|+..+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~---LkhiiilQNKiDli~e~~------ 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK---LKHIIILQNKIDLIKESQ------ 196 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh---hceEEEEechhhhhhHHH------
Confidence 355999999987665544444446777887766542 2222220111111111 245788889999976532
Q ss_pred CCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 134 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.....++++.|.+.- ...|++++||.-++|++-+.+.|.+.+.-+.
T Consensus 197 --A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 197 --ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred --HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 112344555565543 2238999999999999999999999987553
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.36 E-value=1.8e-06 Score=65.13 Aligned_cols=89 Identities=25% Similarity=0.182 Sum_probs=59.7
Q ss_pred cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 72 PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
...+..+|++++|+|+.++.+... ..+...+. +.|+++|+||+|+.+... ........+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~------------~~~~~~~~~~~~ 80 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV------------TKKWIEYFEEQG 80 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH------------HHHHHHHHHHcC
Confidence 445778999999999977644322 12222222 689999999999853210 111122222334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
. +++.+||+++.|++++.+.+.+.+..
T Consensus 81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 I-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4 78899999999999999998887643
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=2.9e-06 Score=58.30 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=36.6
Q ss_pred EEEEEEEcCCcccccccc--------cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215 54 VNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 122 (197)
....++|++|..+-.... ....-.++.+++++|+............+...+... =++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence 456789999964322111 112335889999999865433221113334444332 3778999996
No 380
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.33 E-value=2.1e-06 Score=76.09 Aligned_cols=113 Identities=24% Similarity=0.202 Sum_probs=61.9
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCC----CCc--eeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFPTDY----VPT--VFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~ 74 (197)
.+|+|++|+||||++.+- +-.++-.. ..+ ............+ ...++||+|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999776 22221110 001 0101111111222 234899999321 11223332
Q ss_pred C---------CCCcEEEEEEeCCCH-----hHHHHHHHHH---HHHHhhhC-CCCCEEEEeecCCccCC
Q 029215 75 Y---------RGADVFILAFSLISK-----ASYENVAKKW---IPELRHYA-PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 75 ~---------~~~~~~i~v~d~~~~-----~s~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~D~~~~ 125 (197)
+ +-.+++|+++|+.+. +........+ +..+.... ...||.+++||+|+...
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 358999999998653 2121111222 33333333 58999999999998643
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.30 E-value=4.2e-06 Score=62.55 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=56.1
Q ss_pred EEEEEEEEcCCcccccccc-----------c-CCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215 53 TVNLGLWDTAGQEDYNRLR-----------P-LSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK 119 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~-----------~-~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (197)
.+.+.++||||........ . ..-..+|.+++|+|++... .+... ..+.+.+ -+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEEc
Confidence 3678899999965432211 1 1112478999999997542 22222 2222211 245788899
Q ss_pred CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHH
Q 029215 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (197)
.|..... ..+..+....+. |+..++ +|.+++++-
T Consensus 227 lDe~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 9986532 345556666676 777776 667676654
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.28 E-value=1.8e-06 Score=66.69 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~ 30 (197)
++|+|++|||||||+|.|....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998653
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.26 E-value=1.4e-06 Score=64.15 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++++|.+|||||||+|+|....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999998753
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=1.5e-06 Score=65.57 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
-.++++|++|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998754
No 385
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=8e-06 Score=59.97 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=70.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-----eEEEEECCeEEEEEEEEcCCc-------cccccc-
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-----SANVVVDGSTVNLGLWDTAGQ-------EDYNRL- 70 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~l~i~D~~G~-------~~~~~~- 70 (197)
...|+|+-+|..|.|||||++.|+...+.....+.....+ .....-.+..+.+.+.||.|. +.|..+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 3579999999999999999999999887554333332222 222333566788999999982 111111
Q ss_pred ------cc-------------CCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 71 ------RP-------------LSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 71 ------~~-------------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
.. ..+ ...++++|.+..+.. ++..+.-..+..+.. .+.+|-|+-|.|-..
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds---kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS---KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh---hhhhHHHHHHhhhhh
Confidence 00 012 246777888777653 444442222333332 456666777888643
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=1.8e-05 Score=62.47 Aligned_cols=113 Identities=15% Similarity=0.009 Sum_probs=61.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh-----C-CC----CCCCCCce-------e--eceeEEEEEC--C-------------
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------F--DNFSANVVVD--G------------- 51 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~-----~-~~----~~~~~~t~-------~--~~~~~~~~~~--~------------- 51 (197)
+--|+++|++||||||++..|-. + .. .+.+.+.. . .......... +
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56799999999999999977641 1 10 22222111 0 0011010000 0
Q ss_pred -eEEEEEEEEcCCcccccccc----cC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 52 -STVNLGLWDTAGQEDYNRLR----PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 52 -~~~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
..+.+.|+||+|........ .. ...+++-+++|+|++-++.-.+....+. +. --+.-+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~----~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK----DS--VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH----hc--cCCcEEEEECccCCC
Confidence 24678899999954332110 11 1235788999999976543322213222 21 235678899999854
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.4e-06 Score=64.89 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=34.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC------CCCCC-CCceeeceeEEEEEC-CeEEEEEEEEcCCccccc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~------~~~~~-~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~ 68 (197)
..+++|++|||||||+|+|.... +.+.. .+...+....-+..+ +. .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence 56899999999999999998632 11111 111223333344443 32 279999976544
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=2.1e-05 Score=58.79 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=70.1
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
..+.+-...++|-.++|+.+.+++--......++-..... ++.-+|++||+|+.++.. ...++.....
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y 137 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREY 137 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHH
Confidence 3444555667888888999888865444446666555555 888888999999987643 1113455667
Q ss_pred HHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 148 KLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...|. +.+.+|+++++|++++.+.+...
T Consensus 138 ~~~gy-~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 138 EDIGY-PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HhCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence 77887 88999999999999998887653
No 389
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=7.2e-05 Score=54.27 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=97.6
Q ss_pred eeEEEEECCCCC--cHHHHHHHHhhCCCCCCCCCceeec-eeEEEEE--CCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 6 FIKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 6 ~~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
...++|+|.+|+ ||.+|+.+|....|.+......... +...+.. ....+.+.+- +-.+++.--.....+-..+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcis--hicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCIS--HICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEee--cccchhccCCcccccceee
Confidence 356899999999 9999999998877755433322111 1222211 1111222222 1111211111122344678
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCcccc-------------------------cCC--
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFF-------------------------IDH-- 132 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~-------------------------~~~-- 132 (197)
++++||.+....+..+ +.|+.-.... .. -.+.++||.|..+....- +++
T Consensus 82 ~vmvfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred EEEEEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 9999999999888887 8887533222 22 236788999976542110 010
Q ss_pred -------CCCccccHHHHHHHHHHhCCCeEEEeccCC------------CCCHHHHHHHHHHHHcCCc
Q 029215 133 -------PGAVPITTAQGEELRKLIGSPAYIECSSKT------------QQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 133 -------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~~~~~~ 181 (197)
..........+..++...++ .+++.++.+ -.|++.+|..+-..++...
T Consensus 159 gssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgm 225 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGM 225 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccc
Confidence 01111122345677778887 899988743 2479999998887776543
No 390
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.15 E-value=1e-05 Score=44.82 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=30.5
Q ss_pred CcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215 78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (197)
Q Consensus 78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (197)
+++++|++|.+.. -+.++. ..++..++..+++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 6889999999774 556666 677888888889999999999998
No 391
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=9.3e-07 Score=68.22 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=81.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh--CCC---CC-CCCCce-----------eeceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS--NTF---PT-DYVPTV-----------FDNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~--~~~---~~-~~~~t~-----------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
.-+|.++..-.+||||.-.|++. +.. .+ +...|. .+..+..+..+.+.++++++||||+.+|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 45789999999999999988763 111 00 000010 11223334445555888999999999999
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
-...+.++-.|+++.|||++-+-..+.+ ..|.+. ..+ ++|-...+||+|....
T Consensus 117 leverclrvldgavav~dasagve~qtl-tvwrqa-dk~--~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DKF--KIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-ccc--CCchhhhhhhhhhhhh
Confidence 9888899999999999999987655555 555432 223 7899999999998654
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.13 E-value=5e-06 Score=64.73 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=34.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.+++++|.+|||||||+|++..... ....++|+.... .+...+ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCCC
Confidence 4799999999999999999987432 223333332221 222322 24599999964
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=98.13 E-value=4.4e-06 Score=63.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++++|++|+|||||+|.|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998654
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=4.9e-06 Score=64.89 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=34.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.++.++|.+|||||||+|+|..... ....++|+.... .+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence 4789999999999999999985421 122333332221 2223322 2599999963
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=8.7e-05 Score=57.75 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=49.3
Q ss_pred EEEEEEEEcCCcccccccc----c--CCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCC--CCEEEEeecCCcc
Q 029215 53 TVNLGLWDTAGQEDYNRLR----P--LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPG--VPIILVGTKLDLR 123 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~----~--~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~ 123 (197)
...+.++||+|........ . .....+.-.++|++++.. +...+....+.......... -+-=+|+||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 3577899999965432211 0 112234556888898764 44444433333222111111 1235778999986
Q ss_pred CCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
.. .-.+..+....+. |+..++
T Consensus 295 ~~--------------~G~~l~~~~~~~l-Pi~yvt 315 (374)
T PRK14722 295 SN--------------LGGVLDTVIRYKL-PVHYVS 315 (374)
T ss_pred CC--------------ccHHHHHHHHHCc-CeEEEe
Confidence 53 3455666777776 554443
No 396
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.00 E-value=0.0011 Score=45.64 Aligned_cols=144 Identities=8% Similarity=0.018 Sum_probs=93.8
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.-.|+++|..+.++..|.+.+....- + +.+++.=......- ......-...|.
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~---------------~~l~Vh~a~sLPLp-~e~~~lRprIDl 67 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK------E---------------FKLKVHLAKSLPLP-SENNNLRPRIDL 67 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc------c---------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence 4556788999999999999999999876211 0 11112211111000 001111224699
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|++|....-|++.. +.-+..+...+.--.+.++.+-....+.. .+..+++.+++..+.. |++.+.-
T Consensus 68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-plL~~~l 135 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PLLFADL 135 (176)
T ss_pred EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CEEEeec
Confidence 9999999999999988 44444444433223445555555544432 2789999999999998 9998888
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 029215 161 KTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~ 178 (197)
.+.++...+-+.+.+.+.
T Consensus 136 e~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 136 ENEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 888887777777776654
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.00 E-value=1.1e-05 Score=57.90 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=66.1
Q ss_pred EEEEEEEEcCCcccccccc------cCCCCCCcEEEEE---EeC---CCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeec
Q 029215 53 TVNLGLWDTAGQEDYNRLR------PLSYRGADVFILA---FSL---ISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v---~d~---~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK 119 (197)
.....++|+|||-++-... .+.++..+.=+.+ +|. +++..|-.. ++-.+.... -..|-+=|+.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence 3455699999986543211 1112223333333 333 556555543 222222222 37888999999
Q ss_pred CCccCCcccc--------------------cCCCCCc--cccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215 120 LDLRDDKQFF--------------------IDHPGAV--PITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 120 ~D~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
+|+....... ...+..+ ....+.+..+.+.++...|...+..+.+.+-.+...|-+
T Consensus 173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 9997543310 0111111 123456667777888777777777777777777766654
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.98 E-value=9e-05 Score=58.97 Aligned_cols=83 Identities=16% Similarity=0.044 Sum_probs=46.4
Q ss_pred EEEEEEEcCCcccccccc------cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCCc
Q 029215 54 VNLGLWDTAGQEDYNRLR------PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK 126 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~ 126 (197)
..+.++||+|........ ...+..+|.+++|+|++.....- . ....+. +..++ -+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av---~-~a~~F~---~~l~i~gvIlTKlD~~a~- 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK---N-QAKAFH---EAVGIGGIIITKLDGTAK- 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH---H-HHHHHH---hcCCCCEEEEecccCCCc-
Confidence 477899999965432110 01133578899999987753211 1 112222 12333 577899997543
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
.-.+..++...+. |+..+
T Consensus 248 -------------~G~~ls~~~~~~~-Pi~fi 265 (437)
T PRK00771 248 -------------GGGALSAVAETGA-PIKFI 265 (437)
T ss_pred -------------ccHHHHHHHHHCc-CEEEE
Confidence 2345566666665 54443
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=97.97 E-value=0.00011 Score=58.43 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=46.7
Q ss_pred EEEEEEEEcCCccccccc-cc---C--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL-RP---L--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~-~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~ 125 (197)
.+.+.|+||+|....... .. . ..-.++.+++|+|+...+...+....+.. ..+ .-+|.||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~-------~~~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNE-------ALGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHh-------hCCCCEEEEeCccCccc
Confidence 367889999995432111 00 0 11246778999998765332222132222 122 3577799997432
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
. ..+...+...+. |+..++
T Consensus 256 g--------------G~alsi~~~~~~-PI~fig 274 (433)
T PRK10867 256 G--------------GAALSIRAVTGK-PIKFIG 274 (433)
T ss_pred c--------------cHHHHHHHHHCc-CEEEEe
Confidence 2 235666677776 554443
No 400
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.94 E-value=5.6e-05 Score=51.37 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=35.8
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 121 (197)
.+.+.|+||+|... .. ..++..+|-++++...+-.+...-. +. ..+ ...=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~--~~-~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--SE-VDIASMADTTVVVMAPGAGDDIQAI--KA-GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--hh-hhHHHhCCEEEEEECCCchhHHHHh--hh-hHh-----hhcCEEEEeCCC
Confidence 46788999998542 22 2367789999999887733332222 11 111 223488889987
No 401
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.7e-05 Score=68.09 Aligned_cols=114 Identities=23% Similarity=0.162 Sum_probs=59.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC-CCCCCCCCce-eeceeEEEE--ECCeEEEEEEEEcCCcccc--------cccccC---
Q 029215 9 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTV-FDNFSANVV--VDGSTVNLGLWDTAGQEDY--------NRLRPL--- 73 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~-~~~~~~~~t~-~~~~~~~~~--~~~~~~~l~i~D~~G~~~~--------~~~~~~--- 73 (197)
-+|+|++|+||||++..--.+ .+........ ...-+..+. +.+ .-.++||.|-..- ...|..
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 479999999999999432211 1111111100 000011111 112 3458899983211 122322
Q ss_pred ------CCCCCcEEEEEEeCCCHh----HHH-HHHHHHHH---HHhhhC-CCCCEEEEeecCCccCC
Q 029215 74 ------SYRGADVFILAFSLISKA----SYE-NVAKKWIP---ELRHYA-PGVPIILVGTKLDLRDD 125 (197)
Q Consensus 74 ------~~~~~~~~i~v~d~~~~~----s~~-~~~~~~~~---~~~~~~-~~~p~iiv~nK~D~~~~ 125 (197)
..+-.+++|+.+|+++.- ... .....+.. .+.+.. ...||.+++||.|+.+.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 235689999999986631 111 11122323 333333 58999999999999764
No 402
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.84 E-value=2.4e-05 Score=62.03 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
.+.|.+||.|+|||||+||.|.+.+... ...|...-.+. .+.+.. .+.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ-Ti~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ-TIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE-EEEcCC---CceecCCCCcc
Confidence 5899999999999999999999876522 11111111122 222222 34589999963
No 403
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=3.4e-05 Score=61.17 Aligned_cols=117 Identities=16% Similarity=0.164 Sum_probs=78.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC------------CCCC-----CCC-ce-eeceeEEEE------------ECC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT------------FPTD-----YVP-TV-FDNFSANVV------------VDG 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~~-----~~~-t~-~~~~~~~~~------------~~~ 51 (197)
.++.-++-|+....-|||||-..|.... |.+. ... |+ .+-++..+. -++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3456678899999999999999887532 1110 000 00 011111111 123
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
..+.++++|.||+-+|++.....++--|+.++|+|.-++-..+.- .-+.+.+.+. +.-+++.||.|..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence 468899999999999999998899999999999999887665554 4444555544 3335677999963
No 404
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.81 E-value=0.00014 Score=51.06 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=38.4
Q ss_pred EEEEEEEcCCccccccc--ccCC---CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 54 VNLGLWDTAGQEDYNRL--RPLS---YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
....+++++|...-..+ .... .-..+.++.|+|+.+-.........+...+... =++++||+|+.+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSD 156 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCCh
Confidence 45567888885433333 0000 113588999999977544444434445555433 3889999999654
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=9.7e-05 Score=59.69 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=47.1
Q ss_pred EEEEEEEEcCCccccccc-------ccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL-------RPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+.|+||+|....... ..... ....++|++.+.. ..++ ...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~--~~a~lLVLpAtss--~~Dl-~eii~~f~~---~~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR--QVTSLLVLPANAH--FSDL-DEVVRRFAH---AKPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh--cCCcEEEEECCCC--hhHH-HHHHHHHHh---hCCeEEEEecCcCcc-
Confidence 467889999996432211 01111 1235667776642 2233 223333322 246679999999844
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
....+..+....+. |+..++.
T Consensus 499 -------------~lG~aLsv~~~~~L-PI~yvt~ 519 (559)
T PRK12727 499 -------------RFGSALSVVVDHQM-PITWVTD 519 (559)
T ss_pred -------------chhHHHHHHHHhCC-CEEEEeC
Confidence 33566677777776 6655543
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.0002 Score=56.63 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=46.1
Q ss_pred EEEEEEEcCCccccccc----ccC--CCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 54 VNLGLWDTAGQEDYNRL----RPL--SYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~----~~~--~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
..+.++||+|....... ... .....+-.++|+|++.. ....+. ...+.. --+-=+|+||.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~----~~~f~~---~~~~~~I~TKlDEt~~- 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV----ISAYQG---HGIHGCIITKVDEAAS- 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH----HHHhcC---CCCCEEEEEeeeCCCC-
Confidence 46679999996532211 011 11234567888898843 333332 222221 1233678899998653
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
...+..++...+. |+..++
T Consensus 342 -------------~G~~l~~~~~~~l-Pi~yvt 360 (420)
T PRK14721 342 -------------LGIALDAVIRRKL-VLHYVT 360 (420)
T ss_pred -------------ccHHHHHHHHhCC-CEEEEE
Confidence 3455667777776 555543
No 407
>PRK13695 putative NTPase; Provisional
Probab=97.79 E-value=0.0015 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988653
No 408
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.78 E-value=0.0003 Score=49.01 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=37.5
Q ss_pred EEEEEEEEcCCccccccc----ccCC--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+.++|++|...+... .... ....+.+++|+|........ .+...+.+.. + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~-~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEAL-G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhC-C-CCEEEEECCcCCCC
Confidence 356778999997422111 0111 12489999999987553322 2222322222 2 35677799998654
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.77 E-value=0.00046 Score=54.87 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=48.2
Q ss_pred EEEEEEEEcCCccccccc-cc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 53 TVNLGLWDTAGQEDYNRL-RP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
.+.+.|+||+|....... .. ...-.++.+++|+|++..+.... +...+.... + ..=+|.||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~----~a~~f~~~v-~-i~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVN----TAKTFNERL-G-LTGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHH----HHHHHHhhC-C-CCEEEEeCccCccc-
Confidence 367889999995432211 00 01224788899999876532222 222222221 1 23577899996432
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
...+...+...+. |+..++.
T Consensus 255 -------------~G~~lsi~~~~~~-PI~fi~~ 274 (428)
T TIGR00959 255 -------------GGAALSVRSVTGK-PIKFIGV 274 (428)
T ss_pred -------------ccHHHHHHHHHCc-CEEEEeC
Confidence 2246677777776 6554433
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00013 Score=56.94 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=47.4
Q ss_pred EEEEEEEcCCccccccc----ccCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215 54 VNLGLWDTAGQEDYNRL----RPLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 127 (197)
+.+.|+||+|....... ....+ ...+.+++|+|++... .++ ..+...+... -.-=+|+||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~-~~i~~~F~~~---~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDM-IEIITNFKDI---HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHH-HHHHHHhcCC---CCCEEEEEcccCCCC--
Confidence 67889999996432211 11111 2356788899986432 122 2222333321 223678899998653
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
...+..++...+. |+..++
T Consensus 393 ------------~G~iLni~~~~~l-PIsyit 411 (436)
T PRK11889 393 ------------SGELLKIPAVSSA-PIVLMT 411 (436)
T ss_pred ------------ccHHHHHHHHHCc-CEEEEe
Confidence 3456677777777 555443
No 411
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.65 E-value=5.8e-05 Score=58.12 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=37.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
++.+++.|+|.|++||||+||+|....... ...++. +.....+..+ -.+.|.|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ld---k~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLD---KKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheecc---CCceeccCCcee
Confidence 467999999999999999999999876521 111111 1111222222 245699999953
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.00049 Score=53.62 Aligned_cols=84 Identities=24% Similarity=0.173 Sum_probs=46.0
Q ss_pred EEEEEEEEcCCcccccccc----cCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRLR----PLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~ 125 (197)
.+.+.++||.|...++... ..++. ...-+.+|++++... .++ ...+..++ .+|+ -+++||.|...
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dl-kei~~~f~----~~~i~~~I~TKlDET~- 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDL-KEIIKQFS----LFPIDGLIFTKLDETT- 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHH-HHHHHHhc----cCCcceeEEEcccccC-
Confidence 5678899999976554321 11111 223455677776542 233 33333333 3444 47779999764
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+......+....+. |+-.+
T Consensus 353 -------------s~G~~~s~~~e~~~-PV~Yv 371 (407)
T COG1419 353 -------------SLGNLFSLMYETRL-PVSYV 371 (407)
T ss_pred -------------chhHHHHHHHHhCC-CeEEE
Confidence 34455566666665 54444
No 413
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.61 E-value=5.4e-05 Score=49.42 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 414
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.61 E-value=0.00014 Score=54.44 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=36.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCC-------CCCCCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
...++++|+|-||+|||||+|.+..... .+.+++.+ ..+...+.+... -.+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT-~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVT-RRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCce-eeehhheEeccC-CceEEecCCCc
Confidence 3578999999999999999987764321 12222222 122222333332 23678999994
No 415
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00019 Score=55.53 Aligned_cols=162 Identities=15% Similarity=0.090 Sum_probs=89.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCCC------------------------CCCCce------eeceeEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV------FDNFSANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~------------------------~~~~t~------~~~~~~~~~~~~ 51 (197)
..++++.++|....||||+-..++.. .... +..... ...-...+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte- 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE- 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence 56799999999999999998554421 0000 000000 00001112222
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---HHHHH-HHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YENVA-KKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 127 (197)
.-++.+.|.||+..|-..+..-..+||..++|+++--.+. |+.-- ..=...+.....-...++++||+|-...+.
T Consensus 156 -~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 -NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred -ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 2456799999998887776667778999999998743221 11100 000112222222456788899999765432
Q ss_pred cccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCCHHHHHH
Q 029215 128 FFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 171 (197)
+.. ......+....+.+..|. ..++++|..+|.++++..+
T Consensus 235 ---s~e-Ry~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 ---SNE-RYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ---chh-hHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 000 000122334445454332 3578999999999887654
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.00028 Score=47.40 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=59.0
Q ss_pred EEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC
Q 029215 10 VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 89 (197)
Q Consensus 10 ~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (197)
+.-|..|+|||++.-.+-..-.... ..+.. ...........+.+.++|+|+... ......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~--vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLL--LDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEE--EECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence 4567889999999854432110000 00000 000000001116778999987532 22335677899999999876
Q ss_pred HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 90 KASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
..++... ...++.+.......++.+|+|+.+..
T Consensus 78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 4444444 34444444433456788999999753
No 417
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.60 E-value=0.0021 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
=.+|.|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3567899999999999999854
No 418
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=6.5e-05 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999888753
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00063 Score=52.99 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=46.3
Q ss_pred EEEEEEEcCCcccccccc----cCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCc
Q 029215 54 VNLGLWDTAGQEDYNRLR----PLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDK 126 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~ 126 (197)
+.+.++||+|........ ..+. -..+.+++|.+++.. ..++ ..+...+. .. +--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~-~~i~~~f~----~l~i~glI~TKLDET~~- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADV-MTILPKLA----EIPIDGFIITKMDETTR- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHH-HHHHHhcC----cCCCCEEEEEcccCCCC-
Confidence 678899999974332211 1111 134666777776322 2222 22222222 22 33677899998643
Q ss_pred ccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 127 QFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
...+..++...+. |+..++.
T Consensus 358 -------------~G~~Lsv~~~tgl-PIsylt~ 377 (407)
T PRK12726 358 -------------IGDLYTVMQETNL-PVLYMTD 377 (407)
T ss_pred -------------ccHHHHHHHHHCC-CEEEEec
Confidence 3466677777777 6555543
No 420
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=9.9e-05 Score=41.95 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
..+|.|+.|+|||||++.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988764
No 421
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.55 E-value=0.00011 Score=52.82 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|.++...-|+|+|++|||||||++.+..
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 6677888999999999999999998875
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.53 E-value=8.4e-05 Score=52.05 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
+|+|+|+||+||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 423
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=7.9e-05 Score=51.92 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|+|++|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00069 Score=57.27 Aligned_cols=88 Identities=19% Similarity=0.030 Sum_probs=47.5
Q ss_pred EEEEEEEEcCCccccccc----cc--CCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL----RP--LSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~----~~--~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+.|+||+|....... .. ......+-.++|+|++.. +.+.++ ...+.....--+-=+|+||.|....
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCCC
Confidence 356789999994322110 00 112345678899998753 333333 2222221100134678899998653
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
.-.+..+....+. |+..++
T Consensus 339 --------------~G~iL~i~~~~~l-PI~yit 357 (767)
T PRK14723 339 --------------LGPALDTVIRHRL-PVHYVS 357 (767)
T ss_pred --------------ccHHHHHHHHHCC-CeEEEe
Confidence 3355666677776 555543
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00081 Score=54.16 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=53.0
Q ss_pred EEEEEEEcCCcccccc-------cccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 54 VNLGLWDTAGQEDYNR-------LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+.+.++||+|...... ..... ....-.++|+|++... .+.+. +..+...-..-+|+||.|....
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~-~~p~e~~LVLdAt~~~~~l~~i-------~~~f~~~~~~g~IlTKlDet~~ 406 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGA-GAPVKRLLLLNATSHGDTLNEV-------VQAYRGPGLAGCILTKLDEAAS 406 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhcc-CCCCeeEEEEeCCCcHHHHHHH-------HHHhccCCCCEEEEeCCCCccc
Confidence 4567999999432221 11111 1123367888987542 22222 2222212334577899997543
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH-HHHH----HHHHHHHcC
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV-KAVF----DAAIKVVLQ 179 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~ 179 (197)
...+..+....+. |+..++ +|.+| +++. +.+++.++.
T Consensus 407 --------------~G~~l~i~~~~~l-PI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 --------------LGGALDVVIRYKL-PLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred --------------chHHHHHHHHHCC-CeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 3466777777887 655553 34455 3332 445555544
No 426
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.50 E-value=0.0054 Score=47.09 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCe
Q 029215 77 GADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPA 154 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (197)
..|+++-|+|+..-..... .......++. ..=+|++||.|+.... ..+..+...+.+ ...+
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~ 178 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLVDAE------------ELEALEARLRKLNPRAR 178 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCCCHH------------HHHHHHHHHHHhCCCCe
Confidence 3688999999976543222 2133333333 2348999999997643 133334444443 4446
Q ss_pred EEEeccCCCCCHHHHHH
Q 029215 155 YIECSSKTQQNVKAVFD 171 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~ 171 (197)
++.+|. .+.+..+++.
T Consensus 179 i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 179 IIETSY-GDVDLAELLD 194 (323)
T ss_pred EEEccc-cCCCHHHhhc
Confidence 777666 3344444443
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00057 Score=45.56 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.-.+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999887654
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=8.3e-05 Score=49.99 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
|+++|+||||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0001 Score=52.49 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCe---EE--EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 142 QGEELRKLIGSPA---YI--ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 142 ~~~~~~~~~~~~~---~~--~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+...+|+.+-..| .| +|||.+.+-+.++++.+.+.+...
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 3334555544333 23 499999999999999988877543
No 430
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.43 E-value=0.00018 Score=51.76 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.9
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
...+.+.|+|.|++|||||||++.|...
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999888753
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00065 Score=50.73 Aligned_cols=85 Identities=18% Similarity=0.066 Sum_probs=47.8
Q ss_pred EEEEEEEEcCCccccccc----ccCC--CCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL----RPLS--YRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+.++||+|....... +... ....+-+++|+|++.. +... .+...+.. --+--++.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~----~~~~~f~~---~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI----EIITNFKD---IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH----HHHHHhCC---CCCCEEEEEeecCCCC
Confidence 367889999997533211 1111 1245678999998643 2222 22222222 1233678899998653
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
...+..++...+. |+..++
T Consensus 227 --------------~G~~l~~~~~~~~-Pi~~it 245 (270)
T PRK06731 227 --------------SGELLKIPAVSSA-PIVLMT 245 (270)
T ss_pred --------------ccHHHHHHHHHCc-CEEEEe
Confidence 2355666677776 555443
No 432
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.42 E-value=0.00031 Score=48.75 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=30.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~ 61 (197)
||++-|++|+|||||+.++...--.. .-...-.+...+..++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999998887532100 11122233334444555566666666
No 433
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.0002 Score=49.78 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
|......-+.|+|++|||||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 55556667899999999999999998764
No 434
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.41 E-value=0.0013 Score=40.63 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=42.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc-ccCCCCCCcEEEEEEeC
Q 029215 9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL 87 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (197)
+++.|..|+||||+...+...-....+. ....+ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 6788999999999997665422111110 01111 5669999986533221 13445678999999887
Q ss_pred CCH
Q 029215 88 ISK 90 (197)
Q Consensus 88 ~~~ 90 (197)
+..
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 654
No 435
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.40 E-value=0.00019 Score=42.01 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988764
No 436
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.40 E-value=0.00044 Score=48.19 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=28.5
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 79 DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
|++++|+|+.++.+... ..+...+.....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999988633221 233333211112689999999999954
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.37 E-value=0.00012 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 438
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0027 Score=50.67 Aligned_cols=86 Identities=17% Similarity=0.065 Sum_probs=47.7
Q ss_pred EEEEEEEEcCCcccccc----cccCCCC---CCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 53 TVNLGLWDTAGQEDYNR----LRPLSYR---GADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~----~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
.+.+.++||+|...... .....+. ...-+.+|++++-. ..+..+ ...+... + +--++.||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~--~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL--P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC--C-CCEEEEecccccc
Confidence 36788999999643321 1111111 33466777888644 222222 2233221 1 2368899999854
Q ss_pred CcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
. ...+..+....+. |+..++.
T Consensus 372 ~--------------~G~i~~~~~~~~l-Pv~yit~ 392 (424)
T PRK05703 372 S--------------LGSILSLLIESGL-PISYLTN 392 (424)
T ss_pred c--------------ccHHHHHHHHHCC-CEEEEeC
Confidence 3 3356777777887 6555543
No 439
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.35 E-value=0.0053 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 577899999999999999854
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00024 Score=50.16 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
..=|+|+|++|||||||+++|...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999864
No 441
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.33 E-value=0.00018 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++|+|++|||||||++-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998754
No 442
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0032 Score=45.58 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=61.1
Q ss_pred eeEEEEECCCC---Cc----HHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEc-CCcccccccccCCCCC
Q 029215 6 FIKCVTVGDGA---VG----KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT-AGQEDYNRLRPLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~---~G----Kstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~-~G~~~~~~~~~~~~~~ 77 (197)
.++++++|.+. .| =+.|+++++.+-... . +.+.+.|| +|.+.|. +...+.
T Consensus 98 ~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~-----------------~--~e~VivDtEAGiEHfg---Rg~~~~ 155 (255)
T COG3640 98 DIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILN-----------------R--YEVVIVDTEAGIEHFG---RGTIEG 155 (255)
T ss_pred CccEEEeccccCCCCcccchHHHHHHHHHHHHhcc-----------------c--CcEEEEecccchhhhc---cccccC
Confidence 48999999875 22 345555555543211 1 34568998 6776554 466788
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCC-CCEEEEeecCCcc
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~ 123 (197)
+|.+|.|+|.+- .++... ....+...+. + .++.+|+||.|..
T Consensus 156 vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 156 VDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred CCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence 999999999874 455554 4444444444 5 8899999999964
No 443
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0019 Score=50.78 Aligned_cols=91 Identities=22% Similarity=0.126 Sum_probs=50.3
Q ss_pred EEEEEEEEcCCccccccc----ccCCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 53 TVNLGLWDTAGQEDYNRL----RPLSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~----~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+.+.++||+|....... ....+. ...-.++|.|++... .++ . ..+..+..--+-=+|+||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~-~---~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDV-K---EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence 467889999996532211 111111 123578899998762 222 2 233333211244688899998643
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCH
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (197)
...+..++...+. |+..++ +|.++
T Consensus 328 --------------~G~~l~~~~~~~~-Pi~yit--~Gq~v 351 (388)
T PRK12723 328 --------------VGNLISLIYEMRK-EVSYVT--DGQIV 351 (388)
T ss_pred --------------chHHHHHHHHHCC-CEEEEe--CCCCC
Confidence 3456677777776 554443 34444
No 444
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.00024 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
..++++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999887754
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.26 E-value=0.00025 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999988664
No 446
>PRK14530 adenylate kinase; Provisional
Probab=97.25 E-value=0.00032 Score=50.74 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988853
No 447
>PRK06217 hypothetical protein; Validated
Probab=97.25 E-value=0.00028 Score=49.74 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988754
No 448
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.25 E-value=0.00031 Score=46.35 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988764
No 449
>PRK14527 adenylate kinase; Provisional
Probab=97.23 E-value=0.00036 Score=49.48 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.8
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|+.+....|+++|+|||||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5566677899999999999999988863
No 450
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.0005 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
+..-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999753
No 451
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.21 E-value=0.00017 Score=55.77 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (197)
+.++.+.|.++|.|++||||+||.|-......-.+-..++.+=..++.-. ++.++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHh---ceeEecCCC
No 452
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.20 E-value=0.0004 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
-....+|+|+|+|||||||+...|..
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999988864
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.0004 Score=54.09 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998643
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0004 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF 31 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~ 31 (197)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999876543
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.18 E-value=0.00037 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999764
No 456
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00034 Score=50.91 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
+.++|++|||||||++-+-+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999987764
No 457
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.18 E-value=0.00032 Score=46.09 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888654
No 458
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.001 Score=47.46 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST 53 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 53 (197)
-.+++||+|||||||++.+-.-. +..+ ..++...+.+++.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmn--dl~~---~~r~~G~v~~~g~n 75 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMN--DLIP---GARVEGEVLLDGKN 75 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhc--ccCc---CceEEEEEEECCee
Confidence 35799999999999998875422 1111 23445555566643
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.15 E-value=0.00041 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999653
No 460
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00034 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
-.=+++.||+|+|||||+++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998754
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.001 Score=50.50 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred eEEEEEEEEcCCcccccc------------cccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEee
Q 029215 52 STVNLGLWDTAGQEDYNR------------LRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGT 118 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~n 118 (197)
+.+.+.++||+|--.... ..+..-..++-++++.|++-++ .+.+. +.+.+.+. ---+++|
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-k~F~eav~------l~GiIlT 292 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-KIFNEAVG------LDGIILT 292 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-HHHHHhcC------CceEEEE
Confidence 357888999999432211 1122222356688888997764 44544 54444332 1257789
Q ss_pred cCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHH
Q 029215 119 KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (197)
|.|-.... -.+..++...+. |+..+- .|++++++
T Consensus 293 KlDgtAKG--------------G~il~I~~~l~~-PI~fiG--vGE~~~DL 326 (340)
T COG0552 293 KLDGTAKG--------------GIILSIAYELGI-PIKFIG--VGEGYDDL 326 (340)
T ss_pred ecccCCCc--------------ceeeeHHHHhCC-CEEEEe--CCCChhhc
Confidence 99954322 233466677887 665542 34555554
No 462
>PRK03839 putative kinase; Provisional
Probab=97.13 E-value=0.00044 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
+|+++|.|||||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888653
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.13 E-value=0.00045 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.|+|+|+.++|||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888753
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.12 E-value=0.00044 Score=48.42 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.12 E-value=0.00046 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 029215 7 IKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~ 27 (197)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999998875
No 466
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.11 E-value=0.0031 Score=44.16 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=57.3
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 131 (197)
..+.+.++|+|+.... .....+..+|.+++++..+.. +.... ..+.+.+... +.|+.+|+|++|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 4578889999965321 223456789999999987743 45555 5555666655 6788999999997432
Q ss_pred CCCCccccHHHHHHHHHHhCCCeEE
Q 029215 132 HPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
...+++++.+..+. +++
T Consensus 159 -------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -------hHHHHHHHHHHcCC-CeE
Confidence 23456677777776 554
No 467
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.09 E-value=0.00045 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998873
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.09 E-value=0.00049 Score=49.07 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988663
No 469
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.08 E-value=0.0026 Score=40.23 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=46.0
Q ss_pred EEEEC-CCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 9 i~v~G-~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
|.+.| ..|+||||+...+...-.. ...++. .+..+ ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 55666 5689999998655432110 101111 11111 11677899999864322 22556678999999886
Q ss_pred CCHhHHHHHHHHHHH
Q 029215 88 ISKASYENVAKKWIP 102 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~ 102 (197)
+ ..++... ..+++
T Consensus 72 ~-~~s~~~~-~~~~~ 84 (104)
T cd02042 72 S-PLDLDGL-EKLLE 84 (104)
T ss_pred C-HHHHHHH-HHHHH
Confidence 5 4455555 44443
No 470
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.08 E-value=0.00047 Score=50.84 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
++++||.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998876
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0025 Score=50.07 Aligned_cols=113 Identities=20% Similarity=0.147 Sum_probs=61.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHH----hhCCC------CCCCCCcee-------eceeEEE-EE----------------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISY----TSNTF------PTDYVPTVF-------DNFSANV-VV---------------- 49 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l----~~~~~------~~~~~~t~~-------~~~~~~~-~~---------------- 49 (197)
.++..|+++|-.|+||||.+-.| ..... .+.|.|... ......+ ..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 45688999999999999988433 32211 222333210 0000000 00
Q ss_pred -CCeEEEEEEEEcCCcccccc-cc-----cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215 50 -DGSTVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD 121 (197)
Q Consensus 50 -~~~~~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D 121 (197)
....+.+.|+||+|-..... +. -...-++|=+++|+|+.-++.-......+.+.+ ++ =+|++|.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l-------~itGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL-------GITGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-------CCceEEEEccc
Confidence 11235778999999543321 11 112346889999999987765444435554433 22 35556666
Q ss_pred cc
Q 029215 122 LR 123 (197)
Q Consensus 122 ~~ 123 (197)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 53
No 472
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.00061 Score=47.65 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.8
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 029215 7 IKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~ 27 (197)
-.++|+|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999875
No 473
>PRK14532 adenylate kinase; Provisional
Probab=97.04 E-value=0.00057 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 474
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.00073 Score=47.31 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.+-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999998753
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.04 E-value=0.00057 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999763
No 476
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.00037 Score=53.77 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=31.3
Q ss_pred eEEEEEEEEcCCcccc-cccccC-----CCCCCcEEEEEEeCCCHhHHHHHHHHHHHH
Q 029215 52 STVNLGLWDTAGQEDY-NRLRPL-----SYRGADVFILAFSLISKASYENVAKKWIPE 103 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~-~~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (197)
..+.+.|.||+|-..- .++... -.-..|-+|||.|++-++.-......+.+.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 4688899999994321 111111 122579999999998776544443444333
No 477
>PRK13949 shikimate kinase; Provisional
Probab=97.03 E-value=0.00063 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|+|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987764
No 478
>PRK14531 adenylate kinase; Provisional
Probab=97.03 E-value=0.00064 Score=47.87 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
.+|+++|+|||||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 479
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.02 E-value=0.00064 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987764
No 480
>PLN02200 adenylate kinase family protein
Probab=97.01 E-value=0.00084 Score=49.22 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..+.|+|+|+|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.01 E-value=0.0021 Score=42.66 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999988865
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.99 E-value=0.00062 Score=49.42 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
|+|.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999988875
No 483
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.00069 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6889999999999999988764
No 484
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.98 E-value=0.00071 Score=47.52 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
|+++|+|||||||+..+|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999988865
No 485
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.0008 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-.++++|++|+|||||++.+.+-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999988764
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.97 E-value=0.00066 Score=48.09 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888653
No 487
>PLN02674 adenylate kinase
Probab=96.95 E-value=0.00085 Score=49.31 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....+|+++|+|||||+|+..+|..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999988865
No 488
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.95 E-value=0.00066 Score=48.93 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 489
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00062 Score=45.65 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3457999999999999999998864
No 490
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.95 E-value=0.00081 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 491
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.00083 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|+|+|++||||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.93 E-value=0.0011 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=20.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~ 27 (197)
..++-|+|.|++|||||||++.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999997664
No 493
>PRK02496 adk adenylate kinase; Provisional
Probab=96.93 E-value=0.00091 Score=47.08 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
.+++|+|+|||||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 494
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.0012 Score=48.32 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.+.+-++|.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999988753
No 495
>PRK00625 shikimate kinase; Provisional
Probab=96.91 E-value=0.00093 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+++|.+||||||+.+.+-.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988854
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.90 E-value=0.00096 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999988764
No 497
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.00079 Score=51.65 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
++++||+|||||||++.+-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988865
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.00089 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
--|+|+|++|||||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999988764
No 499
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.90 E-value=0.00096 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 500
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.89 E-value=0.00096 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
Done!