Query 029215
Match_columns 197
No_of_seqs 146 out of 1513
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.7E-41 5.6E-46 243.8 17.6 163 5-179 12-176 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 5E-39 1.7E-43 230.8 19.8 195 1-197 4-202 (212)
3 4dsu_A GTPase KRAS, isoform 2B 100.0 2.4E-37 8.2E-42 217.9 18.7 181 4-197 2-189 (189)
4 3oes_A GTPase rhebl1; small GT 100.0 2.1E-37 7.1E-42 220.7 18.4 181 1-197 19-201 (201)
5 3t5g_A GTP-binding protein RHE 100.0 1.7E-36 5.7E-41 212.4 21.4 172 1-184 1-174 (181)
6 3reg_A RHO-like small GTPase; 100.0 3.7E-36 1.3E-40 213.0 22.5 172 3-182 20-191 (194)
7 2bov_A RAla, RAS-related prote 100.0 1.3E-36 4.4E-41 217.1 18.4 165 4-180 12-178 (206)
8 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.2E-35 4.1E-40 208.7 21.3 181 4-184 3-185 (186)
9 2atx_A Small GTP binding prote 100.0 1.4E-35 4.8E-40 210.0 21.4 177 4-180 16-194 (194)
10 3bwd_D RAC-like GTP-binding pr 100.0 9.2E-37 3.1E-41 213.8 14.8 180 1-180 3-182 (182)
11 3q3j_B RHO-related GTP-binding 100.0 8.4E-36 2.9E-40 214.4 19.8 180 4-183 25-207 (214)
12 2q3h_A RAS homolog gene family 100.0 1.2E-35 4.3E-40 211.4 19.5 179 3-181 17-197 (201)
13 1m7b_A RND3/RHOE small GTP-bin 100.0 1.8E-35 6.3E-40 207.9 19.7 177 3-179 4-183 (184)
14 2gf0_A GTP-binding protein DI- 100.0 4.6E-36 1.6E-40 213.1 16.7 182 3-197 5-199 (199)
15 3tw8_B RAS-related protein RAB 100.0 5.7E-35 1.9E-39 204.3 20.5 169 3-183 6-175 (181)
16 3c5c_A RAS-like protein 12; GD 100.0 3E-35 1E-39 207.3 19.2 164 3-179 18-186 (187)
17 2fu5_C RAS-related protein RAB 100.0 1.3E-35 4.6E-40 208.2 16.8 167 4-182 6-174 (183)
18 2j1l_A RHO-related GTP-binding 100.0 4E-35 1.4E-39 210.9 19.4 179 4-182 32-212 (214)
19 3kkq_A RAS-related protein M-R 100.0 6.9E-35 2.4E-39 204.5 19.1 164 4-179 16-182 (183)
20 1z08_A RAS-related protein RAB 100.0 1.8E-34 6.1E-39 199.9 20.4 165 3-179 3-169 (170)
21 1gwn_A RHO-related GTP-binding 100.0 7E-35 2.4E-39 208.3 18.8 176 4-179 26-204 (205)
22 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-34 4.1E-39 203.8 19.5 165 2-181 16-182 (184)
23 2gco_A H9, RHO-related GTP-bin 100.0 3.1E-34 1.1E-38 204.3 21.8 176 4-179 23-200 (201)
24 2fv8_A H6, RHO-related GTP-bin 100.0 2.7E-34 9.1E-39 205.6 21.3 178 4-181 23-202 (207)
25 4gzl_A RAS-related C3 botulinu 100.0 6.8E-35 2.3E-39 208.2 17.9 174 4-177 28-203 (204)
26 1u8z_A RAS-related protein RAL 100.0 1E-34 3.6E-39 200.5 18.2 163 5-179 3-167 (168)
27 1c1y_A RAS-related protein RAP 100.0 1.5E-34 5.1E-39 199.7 18.9 163 5-178 2-166 (167)
28 2ew1_A RAS-related protein RAB 100.0 1.2E-34 4.1E-39 206.5 18.6 165 4-180 24-190 (201)
29 2bcg_Y Protein YP2, GTP-bindin 100.0 4.5E-34 1.5E-38 204.1 21.7 165 3-179 5-171 (206)
30 2efe_B Small GTP-binding prote 100.0 4E-34 1.4E-38 200.1 20.9 166 4-181 10-177 (181)
31 2iwr_A Centaurin gamma 1; ANK 100.0 9.3E-35 3.2E-39 203.0 17.4 166 1-181 2-171 (178)
32 1z2a_A RAS-related protein RAB 100.0 2.4E-34 8.2E-39 198.8 19.1 165 3-179 2-167 (168)
33 3tkl_A RAS-related protein RAB 100.0 2.9E-34 9.9E-39 203.4 20.0 167 4-182 14-182 (196)
34 2nzj_A GTP-binding protein REM 100.0 1.9E-34 6.5E-39 200.7 18.6 164 4-179 2-169 (175)
35 1r2q_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 198.2 19.8 164 4-179 4-169 (170)
36 2gf9_A RAS-related protein RAB 100.0 5.5E-34 1.9E-38 201.1 21.0 164 4-179 20-185 (189)
37 2fn4_A P23, RAS-related protei 100.0 1.4E-34 4.7E-39 202.3 17.7 167 3-181 6-174 (181)
38 3cpj_B GTP-binding protein YPT 100.0 4.8E-34 1.6E-38 206.4 21.1 167 4-182 11-179 (223)
39 2hup_A RAS-related protein RAB 100.0 9.9E-35 3.4E-39 206.9 16.9 166 4-180 27-194 (201)
40 2a5j_A RAS-related protein RAB 100.0 2.3E-34 7.9E-39 203.4 18.6 165 4-180 19-185 (191)
41 1z0f_A RAB14, member RAS oncog 100.0 4.2E-34 1.5E-38 199.5 19.4 165 3-179 12-178 (179)
42 3q72_A GTP-binding protein RAD 100.0 3.2E-34 1.1E-38 198.0 18.6 161 6-179 2-164 (166)
43 1ek0_A Protein (GTP-binding pr 100.0 5.2E-34 1.8E-38 197.4 19.6 166 5-179 2-169 (170)
44 2g6b_A RAS-related protein RAB 100.0 1.3E-33 4.6E-38 197.3 21.7 166 4-181 8-176 (180)
45 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-33 4.6E-38 195.4 21.3 163 4-178 4-168 (170)
46 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-34 4.9E-39 201.9 15.9 168 3-182 3-176 (178)
47 2atv_A RERG, RAS-like estrogen 100.0 1.7E-34 5.9E-39 204.8 16.1 166 1-179 23-191 (196)
48 2a9k_A RAS-related protein RAL 100.0 2.2E-34 7.5E-39 202.3 16.4 163 5-179 17-181 (187)
49 2bme_A RAB4A, RAS-related prot 100.0 6.3E-34 2.1E-38 200.1 18.7 165 4-180 8-174 (186)
50 3q85_A GTP-binding protein REM 100.0 5.1E-34 1.7E-38 197.5 17.7 163 6-180 2-168 (169)
51 1zbd_A Rabphilin-3A; G protein 100.0 1.2E-33 4.2E-38 201.4 20.0 165 4-180 6-172 (203)
52 1kao_A RAP2A; GTP-binding prot 100.0 4.6E-34 1.6E-38 197.0 17.3 162 5-178 2-165 (167)
53 2fg5_A RAB-22B, RAS-related pr 100.0 7.8E-34 2.7E-38 200.8 18.6 166 4-181 21-188 (192)
54 1g16_A RAS-related protein SEC 100.0 6.8E-34 2.3E-38 196.9 17.9 163 5-180 2-166 (170)
55 2oil_A CATX-8, RAS-related pro 100.0 1.2E-33 4E-38 200.0 19.1 165 4-180 23-189 (193)
56 3con_A GTPase NRAS; structural 100.0 3.5E-33 1.2E-37 197.0 20.7 163 5-180 20-184 (190)
57 1wms_A RAB-9, RAB9, RAS-relate 100.0 4.1E-33 1.4E-37 194.3 20.8 166 3-180 4-175 (177)
58 2o52_A RAS-related protein RAB 100.0 4.2E-34 1.4E-38 203.5 16.0 165 4-180 23-189 (200)
59 2erx_A GTP-binding protein DI- 100.0 6.3E-34 2.2E-38 197.3 16.5 164 5-180 2-168 (172)
60 2p5s_A RAS and EF-hand domain 100.0 8.4E-34 2.9E-38 201.7 17.4 171 3-179 25-197 (199)
61 3bc1_A RAS-related protein RAB 100.0 1.4E-33 4.7E-38 199.4 18.4 165 4-180 9-186 (195)
62 2g3y_A GTP-binding protein GEM 100.0 1.6E-33 5.5E-38 201.7 18.8 163 4-178 35-202 (211)
63 3cbq_A GTP-binding protein REM 100.0 6.4E-34 2.2E-38 201.8 16.6 166 4-181 21-190 (195)
64 1vg8_A RAS-related protein RAB 100.0 2.5E-33 8.5E-38 200.2 19.3 166 4-181 6-177 (207)
65 2il1_A RAB12; G-protein, GDP, 100.0 6.1E-34 2.1E-38 201.4 15.9 165 4-179 24-190 (192)
66 2y8e_A RAB-protein 6, GH09086P 100.0 1.9E-33 6.6E-38 196.2 18.1 163 5-179 13-177 (179)
67 3clv_A RAB5 protein, putative; 100.0 4.5E-33 1.6E-37 198.3 20.3 165 1-179 2-204 (208)
68 1ky3_A GTP-binding protein YPT 100.0 1.6E-33 5.4E-38 197.1 17.4 168 3-180 5-179 (182)
69 2yc2_C IFT27, small RAB-relate 100.0 2E-34 7E-39 205.9 13.2 169 2-182 16-195 (208)
70 1z06_A RAS-related protein RAB 100.0 2.7E-33 9.1E-38 197.5 18.1 163 4-178 18-187 (189)
71 1x3s_A RAS-related protein RAB 100.0 1E-32 3.6E-37 195.1 21.1 165 5-182 14-181 (195)
72 3dz8_A RAS-related protein RAB 100.0 1.4E-34 4.9E-39 204.4 11.5 165 4-180 21-187 (191)
73 2ce2_X GTPase HRAS; signaling 100.0 6.5E-33 2.2E-37 190.9 19.0 161 6-179 3-165 (166)
74 2f7s_A C25KG, RAS-related prot 100.0 1.1E-33 3.6E-38 203.7 14.0 166 4-181 23-201 (217)
75 3cph_A RAS-related protein SEC 100.0 1.2E-32 3.9E-37 197.6 18.3 164 4-180 18-183 (213)
76 2cjw_A GTP-binding protein GEM 100.0 1.5E-32 5.1E-37 194.3 17.9 165 4-180 4-173 (192)
77 3t1o_A Gliding protein MGLA; G 100.0 2E-33 6.9E-38 199.1 12.0 165 3-181 11-194 (198)
78 2wkq_A NPH1-1, RAS-related C3 100.0 7.7E-32 2.6E-36 205.4 20.9 176 5-180 154-331 (332)
79 4djt_A GTP-binding nuclear pro 100.0 1.3E-32 4.3E-37 198.2 14.1 167 4-182 9-178 (218)
80 3l0i_B RAS-related protein RAB 100.0 3.4E-34 1.1E-38 203.8 5.6 165 4-180 31-197 (199)
81 4bas_A ADP-ribosylation factor 100.0 4.8E-32 1.6E-36 192.4 16.4 167 3-181 14-191 (199)
82 3gj0_A GTP-binding nuclear pro 100.0 7.8E-33 2.7E-37 199.8 12.2 165 4-182 13-178 (221)
83 3th5_A RAS-related C3 botulinu 100.0 6.6E-35 2.3E-39 208.2 0.0 174 4-177 28-203 (204)
84 1f6b_A SAR1; gtpases, N-termin 100.0 3.9E-31 1.3E-35 187.9 16.4 157 4-177 23-197 (198)
85 1zj6_A ADP-ribosylation factor 100.0 3.8E-31 1.3E-35 186.2 15.8 163 4-184 14-183 (187)
86 1ksh_A ARF-like protein 2; sma 100.0 1.3E-30 4.6E-35 183.1 18.5 159 4-180 16-181 (186)
87 1r8s_A ADP-ribosylation factor 100.0 6.6E-32 2.3E-36 186.0 11.5 155 7-179 1-162 (164)
88 1m2o_B GTP-binding protein SAR 100.0 1.3E-30 4.4E-35 184.1 18.2 156 4-176 21-189 (190)
89 1upt_A ARL1, ADP-ribosylation 100.0 7.8E-31 2.7E-35 181.7 16.8 164 4-180 5-170 (171)
90 2h57_A ADP-ribosylation factor 100.0 9.9E-31 3.4E-35 184.5 17.2 159 4-179 19-187 (190)
91 1zd9_A ADP-ribosylation factor 100.0 9E-31 3.1E-35 184.5 16.6 160 4-180 20-186 (188)
92 2b6h_A ADP-ribosylation factor 100.0 1.3E-31 4.4E-36 189.5 11.0 159 3-179 26-191 (192)
93 2h17_A ADP-ribosylation factor 100.0 1.3E-30 4.4E-35 182.6 14.3 155 4-176 19-180 (181)
94 2x77_A ADP-ribosylation factor 100.0 5.6E-31 1.9E-35 185.6 12.5 159 4-180 20-185 (189)
95 1fzq_A ADP-ribosylation factor 100.0 9.9E-31 3.4E-35 183.3 13.1 159 4-180 14-179 (181)
96 3llu_A RAS-related GTP-binding 100.0 7E-31 2.4E-35 186.2 12.4 168 3-177 17-195 (196)
97 2f9l_A RAB11B, member RAS onco 100.0 1.4E-29 4.9E-34 179.9 18.5 164 4-179 3-168 (199)
98 2zej_A Dardarin, leucine-rich 100.0 2.5E-31 8.7E-36 186.7 8.7 166 6-182 2-181 (184)
99 1moz_A ARL1, ADP-ribosylation 100.0 2.3E-30 8E-35 181.3 13.6 157 4-178 16-179 (183)
100 1oix_A RAS-related protein RAB 100.0 2.1E-28 7.3E-33 172.8 20.4 161 5-177 28-190 (191)
101 2fh5_B SR-beta, signal recogni 100.0 1.1E-29 3.8E-34 182.3 13.7 173 3-177 4-214 (214)
102 2lkc_A Translation initiation 100.0 6.2E-29 2.1E-33 173.2 16.5 160 3-181 5-173 (178)
103 2qu8_A Putative nucleolar GTP- 100.0 9.1E-29 3.1E-33 179.3 13.9 167 4-184 27-210 (228)
104 2wji_A Ferrous iron transport 100.0 1.4E-28 4.9E-33 169.8 13.7 152 6-177 3-163 (165)
105 3c5h_A Glucocorticoid receptor 100.0 3.8E-29 1.3E-33 184.1 11.3 161 4-178 17-254 (255)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 1.4E-28 4.9E-33 185.5 13.6 169 5-181 2-183 (307)
107 3o47_A ADP-ribosylation factor 100.0 9.5E-29 3.2E-33 188.0 12.7 160 4-180 163-328 (329)
108 3r7w_B Gtpase2, GTP-binding pr 100.0 2.6E-29 8.9E-34 188.4 7.2 164 8-181 1-176 (331)
109 2dyk_A GTP-binding protein; GT 100.0 1.2E-27 4.1E-32 164.0 12.7 150 7-177 2-160 (161)
110 3lvq_E ARF-GAP with SH3 domain 100.0 6E-27 2.1E-31 187.4 18.1 163 4-183 320-488 (497)
111 1svi_A GTP-binding protein YSX 100.0 5.4E-28 1.8E-32 171.0 10.6 159 2-178 19-194 (195)
112 3iev_A GTP-binding protein ERA 99.9 1.3E-26 4.4E-31 174.9 17.6 164 2-180 6-183 (308)
113 3dpu_A RAB family protein; roc 99.9 9E-28 3.1E-32 193.6 10.9 164 3-181 38-210 (535)
114 2wjg_A FEOB, ferrous iron tran 99.9 2E-27 7E-32 167.0 11.1 158 4-181 5-171 (188)
115 3pqc_A Probable GTP-binding pr 99.9 2.1E-27 7.2E-32 167.7 10.9 162 3-179 20-194 (195)
116 3a1s_A Iron(II) transport prot 99.9 6.4E-27 2.2E-31 172.3 13.9 155 4-178 3-166 (258)
117 2gj8_A MNME, tRNA modification 99.9 8E-28 2.7E-32 167.2 8.3 154 5-180 3-167 (172)
118 2cxx_A Probable GTP-binding pr 99.9 8E-28 2.7E-32 169.3 7.5 158 7-182 2-187 (190)
119 3b1v_A Ferrous iron uptake tra 99.9 6.1E-27 2.1E-31 173.4 8.0 153 5-178 2-163 (272)
120 1wf3_A GTP-binding protein; GT 99.9 1.6E-25 5.5E-30 168.1 14.8 157 5-179 6-173 (301)
121 3iby_A Ferrous iron transport 99.9 4.5E-26 1.5E-30 167.5 9.8 150 7-176 2-164 (256)
122 4dhe_A Probable GTP-binding pr 99.9 5.1E-26 1.7E-30 164.1 9.3 165 3-181 26-213 (223)
123 3i8s_A Ferrous iron transport 99.9 2.1E-26 7.3E-31 171.0 7.4 156 5-180 2-170 (274)
124 3gee_A MNME, tRNA modification 99.9 6.3E-25 2.1E-29 173.8 15.4 156 5-178 232-397 (476)
125 3k53_A Ferrous iron transport 99.9 2.5E-25 8.5E-30 165.2 11.3 157 5-180 2-167 (271)
126 2hjg_A GTP-binding protein ENG 99.9 1.8E-25 6.1E-30 176.1 9.9 159 5-179 174-349 (436)
127 4dcu_A GTP-binding protein ENG 99.9 2.5E-25 8.4E-30 176.2 9.4 160 4-179 193-369 (456)
128 1nrj_B SR-beta, signal recogni 99.9 1E-25 3.5E-30 162.0 5.1 148 4-165 10-170 (218)
129 1mky_A Probable GTP-binding pr 99.9 4E-24 1.4E-28 168.6 13.5 153 7-179 2-166 (439)
130 3qq5_A Small GTP-binding prote 99.9 3E-25 1E-29 173.0 6.7 157 4-180 32-197 (423)
131 2e87_A Hypothetical protein PH 99.9 2.5E-23 8.4E-28 160.0 17.2 161 4-180 165-337 (357)
132 1ega_A Protein (GTP-binding pr 99.9 2E-23 6.9E-28 156.9 16.0 159 4-179 6-175 (301)
133 1xzp_A Probable tRNA modificat 99.9 2.5E-24 8.4E-29 170.5 11.5 151 6-178 243-404 (482)
134 1cip_A Protein (guanine nucleo 99.9 8.2E-24 2.8E-28 161.6 12.0 125 54-180 193-345 (353)
135 3sjy_A Translation initiation 99.9 6.1E-23 2.1E-27 160.1 16.1 170 2-181 4-194 (403)
136 1s0u_A EIF-2-gamma, translatio 99.9 1.7E-22 5.8E-27 157.9 16.1 166 1-180 3-199 (408)
137 3geh_A MNME, tRNA modification 99.9 2.2E-23 7.6E-28 164.4 11.2 154 5-181 223-386 (462)
138 1lnz_A SPO0B-associated GTP-bi 99.9 2.4E-23 8.1E-28 158.5 10.1 160 7-182 159-333 (342)
139 2ywe_A GTP-binding protein LEP 99.9 2E-22 6.7E-27 162.8 15.4 165 1-181 1-186 (600)
140 2xtz_A Guanine nucleotide-bind 99.9 1.9E-23 6.4E-28 159.5 9.0 127 52-179 181-345 (354)
141 2xtp_A GTPase IMAP family memb 99.9 1.7E-22 5.7E-27 149.1 13.7 162 5-179 21-208 (260)
142 3ohm_A Guanine nucleotide-bind 99.9 9.3E-23 3.2E-27 153.7 12.2 132 47-181 162-320 (327)
143 1mky_A Probable GTP-binding pr 99.9 3E-22 1E-26 157.9 15.5 159 5-179 179-355 (439)
144 3izy_P Translation initiation 99.9 8E-25 2.7E-29 174.7 0.7 161 4-179 2-168 (537)
145 2hjg_A GTP-binding protein ENG 99.9 2.2E-24 7.6E-29 169.8 2.8 152 7-179 4-165 (436)
146 1wb1_A Translation elongation 99.9 1.3E-22 4.3E-27 161.3 12.1 161 4-178 17-188 (482)
147 3cb4_D GTP-binding protein LEP 99.9 2.3E-22 8E-27 162.6 13.4 162 4-181 2-184 (599)
148 1zcb_A G alpha I/13; GTP-bindi 99.9 4.8E-22 1.7E-26 152.3 13.0 125 54-180 201-354 (362)
149 2c78_A Elongation factor TU-A; 99.9 2.4E-22 8.1E-27 157.0 11.0 165 3-180 8-213 (405)
150 3lxx_A GTPase IMAP family memb 99.9 1.4E-21 4.7E-26 142.5 14.0 168 4-179 27-214 (239)
151 3tr5_A RF-3, peptide chain rel 99.9 9.5E-22 3.3E-26 157.4 13.9 115 5-125 12-149 (528)
152 1kk1_A EIF2gamma; initiation o 99.9 7.5E-22 2.6E-26 154.4 12.9 165 3-181 7-202 (410)
153 3j2k_7 ERF3, eukaryotic polype 99.9 1.4E-21 4.8E-26 153.8 13.8 159 4-171 15-217 (439)
154 1jny_A EF-1-alpha, elongation 99.9 2.8E-22 9.7E-27 157.7 9.4 161 1-170 1-204 (435)
155 1d2e_A Elongation factor TU (E 99.9 1.1E-21 3.8E-26 152.7 12.6 163 5-180 2-196 (397)
156 2qtf_A Protein HFLX, GTP-bindi 99.9 6E-21 2.1E-25 146.5 15.8 161 7-180 179-355 (364)
157 1g7s_A Translation initiation 99.9 3.8E-21 1.3E-25 155.7 15.0 168 4-178 3-217 (594)
158 4fid_A G protein alpha subunit 99.9 1.1E-21 3.9E-26 148.3 11.1 127 53-179 160-328 (340)
159 1azs_C GS-alpha; complex (lyas 99.9 1.3E-21 4.5E-26 151.0 11.5 127 54-181 217-387 (402)
160 3t5d_A Septin-7; GTP-binding p 99.9 2.4E-22 8.3E-27 149.3 6.6 163 2-177 4-202 (274)
161 2ged_A SR-beta, signal recogni 99.9 6.3E-22 2.2E-26 139.5 8.4 114 4-126 46-172 (193)
162 3p26_A Elongation factor 1 alp 99.9 2.3E-21 7.9E-26 154.4 12.0 152 4-168 31-227 (483)
163 3lxw_A GTPase IMAP family memb 99.9 1.6E-20 5.3E-25 137.5 14.5 167 3-179 18-208 (247)
164 1zo1_I IF2, translation initia 99.9 1.6E-22 5.5E-27 160.2 4.2 161 4-176 2-164 (501)
165 1zun_B Sulfate adenylate trans 99.9 5.1E-21 1.8E-25 150.6 12.4 156 4-169 22-214 (434)
166 2qag_A Septin-2, protein NEDD5 99.9 1.5E-22 5E-27 155.6 3.4 160 5-179 36-233 (361)
167 3izq_1 HBS1P, elongation facto 99.8 9.8E-21 3.4E-25 154.1 12.4 155 4-169 165-362 (611)
168 2elf_A Protein translation elo 99.8 2.2E-21 7.7E-26 149.3 8.0 150 8-180 23-181 (370)
169 4dcu_A GTP-binding protein ENG 99.8 3.8E-22 1.3E-26 157.9 3.8 153 6-179 23-185 (456)
170 1f60_A Elongation factor EEF1A 99.8 1.6E-20 5.6E-25 148.4 12.1 156 1-168 1-201 (458)
171 1r5b_A Eukaryotic peptide chai 99.8 1.6E-21 5.5E-26 154.6 6.0 159 3-170 40-243 (467)
172 3avx_A Elongation factor TS, e 99.8 1E-20 3.5E-25 160.2 10.3 166 4-180 294-487 (1289)
173 2aka_B Dynamin-1; fusion prote 99.8 3E-21 1E-25 145.0 5.9 159 5-176 25-250 (299)
174 1pui_A ENGB, probable GTP-bind 99.8 5.4E-20 1.8E-24 131.3 10.0 163 3-180 23-200 (210)
175 3def_A T7I23.11 protein; chlor 99.8 1.1E-19 3.8E-24 134.1 11.1 118 5-125 35-166 (262)
176 2h5e_A Peptide chain release f 99.8 6.5E-19 2.2E-23 141.2 16.3 115 5-125 12-149 (529)
177 2dy1_A Elongation factor G; tr 99.8 1.3E-19 4.6E-24 148.9 12.0 114 4-123 7-139 (665)
178 3mca_A HBS1, elongation factor 99.8 8.9E-21 3E-25 153.9 4.8 165 4-178 175-396 (592)
179 1u0l_A Probable GTPase ENGC; p 99.8 2.2E-20 7.6E-25 140.3 5.2 134 21-175 32-169 (301)
180 1dar_A EF-G, elongation factor 99.8 1.1E-18 3.9E-23 144.0 14.5 115 4-125 10-144 (691)
181 2j69_A Bacterial dynamin-like 99.8 6E-19 2.1E-23 145.7 11.8 172 5-181 68-327 (695)
182 2xex_A Elongation factor G; GT 99.8 3.2E-18 1.1E-22 141.3 15.5 116 4-125 8-142 (693)
183 1h65_A Chloroplast outer envel 99.8 2.9E-18 1E-22 127.0 13.7 118 5-125 38-169 (270)
184 2rdo_7 EF-G, elongation factor 99.8 8.5E-18 2.9E-22 138.9 16.4 117 4-125 8-149 (704)
185 1udx_A The GTP-binding protein 99.8 3E-18 1E-22 133.3 12.9 159 8-182 159-328 (416)
186 2qnr_A Septin-2, protein NEDD5 99.8 8.1E-20 2.8E-24 137.2 3.3 162 5-180 17-215 (301)
187 1jwy_B Dynamin A GTPase domain 99.8 1.4E-19 4.6E-24 137.0 3.9 114 54-181 131-264 (315)
188 2qag_C Septin-7; cell cycle, c 99.8 2.3E-18 8E-23 134.0 10.3 159 5-177 30-225 (418)
189 3t34_A Dynamin-related protein 99.8 2.7E-19 9.2E-24 137.7 4.4 154 6-172 34-254 (360)
190 1wxq_A GTP-binding protein; st 99.7 4.4E-18 1.5E-22 132.0 9.8 84 7-90 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 3E-17 1E-21 117.9 10.0 156 5-181 29-216 (221)
192 3vqt_A RF-3, peptide chain rel 99.7 3.5E-16 1.2E-20 125.9 14.9 115 5-125 30-167 (548)
193 1jal_A YCHF protein; nucleotid 99.7 1.3E-15 4.4E-20 116.3 15.9 84 6-89 2-108 (363)
194 2x2e_A Dynamin-1; nitration, h 99.7 4.1E-18 1.4E-22 130.8 1.5 157 6-175 31-254 (353)
195 2hf9_A Probable hydrogenase ni 99.7 6.8E-18 2.3E-22 121.7 1.1 153 5-178 37-223 (226)
196 3p32_A Probable GTPase RV1496/ 99.7 7E-17 2.4E-21 124.0 6.7 107 54-179 172-284 (355)
197 1n0u_A EF-2, elongation factor 99.6 2E-16 6.9E-21 133.1 7.9 117 3-123 16-163 (842)
198 2qpt_A EH domain-containing pr 99.6 1.7E-16 6E-21 127.8 6.6 117 5-125 64-233 (550)
199 2www_A Methylmalonic aciduria 99.6 9.9E-17 3.4E-21 122.7 3.8 103 54-178 167-278 (349)
200 2dby_A GTP-binding protein; GD 99.6 1.1E-14 3.9E-19 111.6 14.4 83 7-89 2-111 (368)
201 2p67_A LAO/AO transport system 99.6 5E-16 1.7E-20 118.6 4.6 104 54-178 149-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.6 5.6E-15 1.9E-19 108.7 10.0 118 54-178 109-256 (262)
203 3j25_A Tetracycline resistance 99.6 4.8E-16 1.7E-20 127.4 4.2 173 6-182 2-242 (638)
204 4a9a_A Ribosome-interacting GT 99.6 8.7E-14 3E-18 106.7 14.0 143 6-152 72-222 (376)
205 4fn5_A EF-G 1, elongation fact 99.6 8.8E-14 3E-18 115.4 14.9 116 5-124 12-151 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 5.5E-15 1.9E-19 122.0 6.2 157 6-176 51-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.5 4.9E-14 1.7E-18 105.8 9.7 97 64-174 66-164 (302)
208 3l82_B F-box only protein 4; T 99.4 6.6E-14 2.3E-18 97.9 4.0 106 62-181 110-225 (227)
209 2qm8_A GTPase/ATPase; G protei 99.4 1.4E-13 4.9E-18 104.7 5.4 104 54-178 148-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1E-12 3.5E-17 101.2 4.1 88 5-92 21-131 (396)
211 3l2o_B F-box only protein 4; s 99.3 2.4E-12 8.3E-17 94.3 5.6 107 61-181 194-310 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.4E-10 4.7E-15 89.6 14.2 85 5-89 19-127 (392)
213 3h2y_A GTPase family protein; 99.1 1.6E-10 5.4E-15 88.9 6.6 98 63-177 55-158 (368)
214 2qag_B Septin-6, protein NEDD5 99.0 7.1E-09 2.4E-13 80.7 13.5 115 6-125 42-191 (427)
215 2j37_W Signal recognition part 99.0 2.8E-10 9.6E-15 90.5 4.5 152 4-176 99-310 (504)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 4.5E-10 1.5E-14 86.5 4.8 98 63-177 57-160 (369)
217 3ec1_A YQEH GTPase; atnos1, at 98.9 7.7E-11 2.6E-15 90.8 -0.8 140 6-166 162-318 (369)
218 3sop_A Neuronal-specific septi 98.9 6.7E-09 2.3E-13 76.6 9.6 114 6-125 2-155 (270)
219 1tq4_A IIGP1, interferon-induc 98.9 2.7E-08 9.4E-13 77.3 11.5 167 6-181 69-255 (413)
220 3h2y_A GTPase family protein; 98.8 1.6E-10 5.4E-15 89.0 -2.2 111 7-126 161-289 (368)
221 1puj_A YLQF, conserved hypothe 98.8 5.8E-09 2E-13 77.4 4.3 102 58-179 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 7.2E-08 2.5E-12 71.5 5.3 56 5-65 119-176 (282)
223 3dm5_A SRP54, signal recogniti 98.5 2.8E-07 9.7E-12 72.1 8.4 135 5-160 99-274 (443)
224 3cnl_A YLQF, putative uncharac 98.5 4.8E-08 1.7E-12 71.7 3.3 55 7-66 100-156 (262)
225 2v3c_C SRP54, signal recogniti 98.5 3.3E-08 1.1E-12 77.5 2.6 64 54-124 181-252 (432)
226 1t9h_A YLOQ, probable GTPase E 98.4 1.9E-07 6.4E-12 69.9 4.6 92 68-172 77-170 (307)
227 1f5n_A Interferon-induced guan 98.4 2.5E-07 8.6E-12 74.9 5.6 63 4-66 36-103 (592)
228 3cnl_A YLQF, putative uncharac 98.3 1.8E-07 6.2E-12 68.6 2.2 94 61-176 4-98 (262)
229 3kl4_A SRP54, signal recogniti 98.2 2.4E-06 8.3E-11 66.8 6.4 86 54-160 180-273 (433)
230 1j8m_F SRP54, signal recogniti 98.2 3.4E-06 1.2E-10 63.0 6.0 91 54-168 181-280 (297)
231 3szr_A Interferon-induced GTP- 98.1 3.3E-06 1.1E-10 69.1 4.6 23 8-30 47-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.0 4.7E-05 1.6E-09 58.1 9.5 85 75-173 128-213 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.9 1.7E-07 5.8E-12 74.4 -5.1 108 5-117 38-156 (469)
234 3e70_C DPA, signal recognition 97.9 2.2E-05 7.6E-10 59.3 6.5 91 55-168 213-309 (328)
235 3q5d_A Atlastin-1; G protein, 97.7 8.2E-05 2.8E-09 58.4 6.8 24 5-28 66-89 (447)
236 2xxa_A Signal recognition part 97.6 0.0005 1.7E-08 53.9 9.5 64 54-124 184-254 (433)
237 1ye8_A Protein THEP1, hypothet 97.6 5.2E-05 1.8E-09 52.2 3.4 22 8-29 2-23 (178)
238 1kgd_A CASK, peripheral plasma 97.5 6.5E-05 2.2E-09 51.7 3.2 22 8-29 7-28 (180)
239 3asz_A Uridine kinase; cytidin 97.5 6.7E-05 2.3E-09 52.8 3.3 28 1-28 1-28 (211)
240 1t9h_A YLOQ, probable GTPase E 97.4 4.5E-05 1.5E-09 57.0 2.1 23 7-29 174-196 (307)
241 1lvg_A Guanylate kinase, GMP k 97.4 8E-05 2.8E-09 52.1 3.2 22 7-28 5-26 (198)
242 2j41_A Guanylate kinase; GMP, 97.4 0.00011 3.7E-09 51.4 3.5 30 1-30 1-30 (207)
243 4eun_A Thermoresistant glucoki 97.4 0.00013 4.3E-09 51.1 3.5 25 4-28 27-51 (200)
244 1qf9_A UMP/CMP kinase, protein 97.4 0.00014 4.6E-09 50.3 3.6 28 1-28 1-28 (194)
245 3a00_A Guanylate kinase, GMP k 97.4 0.00011 3.9E-09 50.7 3.1 20 9-28 4-23 (186)
246 2yv5_A YJEQ protein; hydrolase 97.3 0.00032 1.1E-08 52.4 5.6 20 8-27 167-186 (302)
247 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 51.1 3.2 22 8-29 9-30 (205)
248 4gp7_A Metallophosphoesterase; 97.3 0.00011 3.7E-09 50.2 2.7 20 8-27 11-30 (171)
249 3ney_A 55 kDa erythrocyte memb 97.3 0.00018 6.1E-09 50.3 3.7 24 6-29 19-42 (197)
250 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 51.7 3.2 22 8-29 18-39 (219)
251 1znw_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 51.0 3.1 22 8-29 22-43 (207)
252 1y63_A LMAJ004144AAA protein; 97.3 0.00019 6.5E-09 49.5 3.6 29 1-29 5-33 (184)
253 1z6g_A Guanylate kinase; struc 97.3 0.00016 5.5E-09 51.3 3.1 22 8-29 25-46 (218)
254 1ex7_A Guanylate kinase; subst 97.3 0.00018 6E-09 49.8 3.2 21 9-29 4-24 (186)
255 1zp6_A Hypothetical protein AT 97.2 0.0002 6.8E-09 49.5 3.4 24 6-29 9-32 (191)
256 3c8u_A Fructokinase; YP_612366 97.2 0.00023 7.7E-09 50.1 3.6 24 5-28 21-44 (208)
257 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.5E-09 50.5 3.2 23 7-29 9-31 (208)
258 1nn5_A Similar to deoxythymidy 97.2 0.0002 6.9E-09 50.4 3.0 28 1-28 4-31 (215)
259 1knq_A Gluconate kinase; ALFA/ 97.2 0.00037 1.3E-08 47.4 4.1 23 6-28 8-30 (175)
260 2qor_A Guanylate kinase; phosp 97.2 0.00025 8.5E-09 49.7 3.2 23 7-29 13-35 (204)
261 3tif_A Uncharacterized ABC tra 97.2 0.00023 7.9E-09 51.2 3.0 22 8-29 33-54 (235)
262 1htw_A HI0065; nucleotide-bind 97.1 0.00028 9.7E-09 47.5 3.1 23 8-30 35-57 (158)
263 3lw7_A Adenylate kinase relate 97.1 0.00027 9.2E-09 47.8 3.0 20 7-26 2-21 (179)
264 1ly1_A Polynucleotide kinase; 97.1 0.00037 1.3E-08 47.5 3.7 22 7-28 3-24 (181)
265 1kag_A SKI, shikimate kinase I 97.1 0.00031 1.1E-08 47.7 3.2 22 7-28 5-26 (173)
266 2bdt_A BH3686; alpha-beta prot 97.1 0.0003 1E-08 48.5 3.1 21 8-28 4-24 (189)
267 2bbw_A Adenylate kinase 4, AK4 97.1 0.00035 1.2E-08 50.5 3.4 22 6-27 27-48 (246)
268 3kb2_A SPBC2 prophage-derived 97.1 0.00035 1.2E-08 47.3 3.2 21 8-28 3-23 (173)
269 2onk_A Molybdate/tungstate ABC 97.1 0.00034 1.2E-08 50.4 3.2 22 8-29 26-47 (240)
270 2pcj_A ABC transporter, lipopr 97.1 0.00029 9.9E-09 50.3 2.7 22 8-29 32-53 (224)
271 2rcn_A Probable GTPase ENGC; Y 97.0 0.00037 1.3E-08 53.2 3.3 23 8-30 217-239 (358)
272 1sgw_A Putative ABC transporte 97.0 0.00036 1.2E-08 49.4 3.1 22 8-29 37-58 (214)
273 2i3b_A HCR-ntpase, human cance 97.0 0.00037 1.2E-08 48.4 3.0 21 8-28 3-23 (189)
274 3gfo_A Cobalt import ATP-bindi 97.0 0.00036 1.2E-08 51.4 3.1 22 8-29 36-57 (275)
275 1b0u_A Histidine permease; ABC 97.0 0.00037 1.3E-08 51.0 3.1 22 8-29 34-55 (262)
276 2cbz_A Multidrug resistance-as 97.0 0.00042 1.4E-08 49.9 3.3 22 8-29 33-54 (237)
277 3fb4_A Adenylate kinase; psych 97.0 0.00041 1.4E-08 48.9 3.2 21 8-28 2-22 (216)
278 1g6h_A High-affinity branched- 97.0 0.00039 1.3E-08 50.6 3.0 22 8-29 35-56 (257)
279 3dl0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 48.8 3.2 21 8-28 2-22 (216)
280 1mv5_A LMRA, multidrug resista 97.0 0.00047 1.6E-08 49.8 3.3 22 8-29 30-51 (243)
281 2cdn_A Adenylate kinase; phosp 97.0 0.00057 2E-08 47.6 3.7 25 4-28 18-42 (201)
282 1aky_A Adenylate kinase; ATP:A 97.0 0.00049 1.7E-08 48.7 3.3 24 5-28 3-26 (220)
283 3vaa_A Shikimate kinase, SK; s 97.0 0.00053 1.8E-08 47.8 3.5 23 6-28 25-47 (199)
284 4g1u_C Hemin import ATP-bindin 97.0 0.00041 1.4E-08 50.8 3.0 22 8-29 39-60 (266)
285 3tlx_A Adenylate kinase 2; str 97.0 0.00062 2.1E-08 49.1 3.9 25 4-28 27-51 (243)
286 1np6_A Molybdopterin-guanine d 97.0 0.00049 1.7E-08 47.1 3.2 23 7-29 7-29 (174)
287 2ff7_A Alpha-hemolysin translo 97.0 0.00047 1.6E-08 49.9 3.3 22 8-29 37-58 (247)
288 3ec2_A DNA replication protein 97.0 0.00042 1.4E-08 47.4 2.9 23 6-28 38-60 (180)
289 2olj_A Amino acid ABC transpor 97.0 0.00044 1.5E-08 50.6 3.1 22 8-29 52-73 (263)
290 2v9p_A Replication protein E1; 97.0 0.00048 1.6E-08 51.4 3.3 22 7-28 127-148 (305)
291 2pze_A Cystic fibrosis transme 97.0 0.00051 1.7E-08 49.2 3.3 22 8-29 36-57 (229)
292 3t61_A Gluconokinase; PSI-biol 97.0 0.00047 1.6E-08 48.1 3.1 22 7-28 19-40 (202)
293 2eyu_A Twitching motility prot 97.0 0.00045 1.5E-08 50.5 3.1 21 8-28 27-47 (261)
294 3b85_A Phosphate starvation-in 97.0 0.00041 1.4E-08 48.9 2.8 22 8-29 24-45 (208)
295 3aez_A Pantothenate kinase; tr 97.0 0.00067 2.3E-08 50.9 4.1 25 4-28 88-112 (312)
296 1cke_A CK, MSSA, protein (cyti 97.0 0.00057 2E-08 48.5 3.6 23 6-28 5-27 (227)
297 1vpl_A ABC transporter, ATP-bi 97.0 0.00047 1.6E-08 50.2 3.1 22 8-29 43-64 (256)
298 1ji0_A ABC transporter; ATP bi 97.0 0.00046 1.6E-08 49.8 3.0 22 8-29 34-55 (240)
299 2qi9_C Vitamin B12 import ATP- 96.9 0.00048 1.7E-08 49.9 3.1 22 8-29 28-49 (249)
300 1qhx_A CPT, protein (chloramph 96.9 0.00051 1.8E-08 46.8 3.1 22 7-28 4-25 (178)
301 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00051 1.7E-08 49.8 3.2 22 8-29 31-52 (250)
302 3tqc_A Pantothenate kinase; bi 96.9 0.00073 2.5E-08 50.8 4.0 25 4-28 90-114 (321)
303 1ukz_A Uridylate kinase; trans 96.9 0.00075 2.6E-08 47.0 3.9 25 4-28 13-37 (203)
304 2ghi_A Transport protein; mult 96.9 0.00055 1.9E-08 50.0 3.3 22 8-29 48-69 (260)
305 3cm0_A Adenylate kinase; ATP-b 96.9 0.00071 2.4E-08 46.4 3.7 23 6-28 4-26 (186)
306 2zu0_C Probable ATP-dependent 96.9 0.00055 1.9E-08 50.2 3.2 22 8-29 48-69 (267)
307 3uie_A Adenylyl-sulfate kinase 96.9 0.00048 1.6E-08 48.1 2.8 24 5-28 24-47 (200)
308 2ihy_A ABC transporter, ATP-bi 96.9 0.00058 2E-08 50.4 3.3 22 8-29 49-70 (279)
309 2if2_A Dephospho-COA kinase; a 96.9 0.00053 1.8E-08 47.9 3.0 22 7-28 2-23 (204)
310 2ehv_A Hypothetical protein PH 96.9 0.00054 1.9E-08 49.3 3.2 20 8-27 32-51 (251)
311 1uj2_A Uridine-cytidine kinase 96.9 0.00063 2.2E-08 49.3 3.5 26 3-28 19-44 (252)
312 2jeo_A Uridine-cytidine kinase 96.9 0.00071 2.4E-08 48.8 3.7 24 5-28 24-47 (245)
313 1gvn_B Zeta; postsegregational 96.9 0.00075 2.6E-08 50.0 3.9 24 5-28 32-55 (287)
314 2ixe_A Antigen peptide transpo 96.9 0.0006 2E-08 50.1 3.3 22 8-29 47-68 (271)
315 3sr0_A Adenylate kinase; phosp 96.9 0.00066 2.2E-08 47.8 3.3 21 8-28 2-22 (206)
316 1nks_A Adenylate kinase; therm 96.9 0.00055 1.9E-08 47.2 2.9 21 8-28 3-23 (194)
317 1jjv_A Dephospho-COA kinase; P 96.9 0.00073 2.5E-08 47.3 3.6 22 7-28 3-24 (206)
318 1tev_A UMP-CMP kinase; ploop, 96.9 0.00072 2.4E-08 46.6 3.5 23 6-28 3-25 (196)
319 2rhm_A Putative kinase; P-loop 96.9 0.00065 2.2E-08 46.8 3.2 24 5-28 4-27 (193)
320 2nq2_C Hypothetical ABC transp 96.9 0.00057 2E-08 49.7 3.0 22 8-29 33-54 (253)
321 2jaq_A Deoxyguanosine kinase; 96.9 0.0007 2.4E-08 47.1 3.4 21 8-28 2-22 (205)
322 3iij_A Coilin-interacting nucl 96.9 0.00071 2.4E-08 46.3 3.3 23 6-28 11-33 (180)
323 2yz2_A Putative ABC transporte 96.9 0.00059 2E-08 50.0 3.0 22 8-29 35-56 (266)
324 1kht_A Adenylate kinase; phosp 96.9 0.00072 2.5E-08 46.5 3.3 22 7-28 4-25 (192)
325 3trf_A Shikimate kinase, SK; a 96.9 0.00072 2.4E-08 46.4 3.2 23 6-28 5-27 (185)
326 1u0l_A Probable GTPase ENGC; p 96.8 0.00059 2E-08 50.9 2.9 23 8-30 171-193 (301)
327 3lnc_A Guanylate kinase, GMP k 96.8 0.00043 1.5E-08 49.5 2.1 21 7-27 28-48 (231)
328 1odf_A YGR205W, hypothetical 3 96.8 0.00096 3.3E-08 49.5 4.0 24 4-27 29-52 (290)
329 2pjz_A Hypothetical protein ST 96.8 0.00074 2.5E-08 49.4 3.3 22 8-29 32-53 (263)
330 4a74_A DNA repair and recombin 96.8 0.00059 2E-08 48.4 2.8 23 8-30 27-49 (231)
331 2plr_A DTMP kinase, probable t 96.8 0.00091 3.1E-08 46.8 3.6 23 6-28 4-26 (213)
332 2v54_A DTMP kinase, thymidylat 96.8 0.00095 3.3E-08 46.5 3.6 24 6-29 4-27 (204)
333 2f1r_A Molybdopterin-guanine d 96.8 0.00036 1.2E-08 47.6 1.3 21 8-28 4-24 (171)
334 1lw7_A Transcriptional regulat 96.8 0.0007 2.4E-08 51.9 3.0 24 6-29 170-193 (365)
335 1via_A Shikimate kinase; struc 96.8 0.00073 2.5E-08 46.0 2.8 21 8-28 6-26 (175)
336 1e4v_A Adenylate kinase; trans 96.8 0.00072 2.5E-08 47.7 2.8 21 8-28 2-22 (214)
337 2qt1_A Nicotinamide riboside k 96.8 0.0011 3.6E-08 46.5 3.6 25 5-29 20-44 (207)
338 1zd8_A GTP:AMP phosphotransfer 96.7 0.0008 2.7E-08 47.9 2.9 24 5-28 6-29 (227)
339 2wwf_A Thymidilate kinase, put 96.7 0.00099 3.4E-08 46.7 3.3 24 5-28 9-32 (212)
340 1rz3_A Hypothetical protein rb 96.7 0.0012 4.2E-08 46.1 3.7 24 5-28 21-44 (201)
341 1vht_A Dephospho-COA kinase; s 96.7 0.0012 4E-08 46.6 3.7 24 5-28 3-26 (218)
342 1xjc_A MOBB protein homolog; s 96.7 0.0012 4E-08 45.0 3.4 22 7-28 5-26 (169)
343 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 45.3 3.4 23 6-28 43-65 (195)
344 3nh6_A ATP-binding cassette SU 96.7 0.00064 2.2E-08 50.8 2.3 21 8-28 82-102 (306)
345 2x8a_A Nuclear valosin-contain 96.7 0.00093 3.2E-08 49.1 3.2 20 9-28 47-66 (274)
346 1zak_A Adenylate kinase; ATP:A 96.7 0.00077 2.6E-08 47.8 2.6 24 5-28 4-27 (222)
347 2kjq_A DNAA-related protein; s 96.7 0.00072 2.5E-08 45.0 2.3 21 8-28 38-58 (149)
348 2c95_A Adenylate kinase 1; tra 96.7 0.00097 3.3E-08 46.1 3.0 24 5-28 8-31 (196)
349 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 47.1 3.3 21 8-28 2-22 (223)
350 3tui_C Methionine import ATP-b 96.7 0.001 3.5E-08 50.9 3.2 22 8-29 56-77 (366)
351 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4.1E-08 44.4 3.3 21 8-28 2-22 (168)
352 3jvv_A Twitching mobility prot 96.7 0.00099 3.4E-08 50.9 3.1 21 8-28 125-145 (356)
353 1uf9_A TT1252 protein; P-loop, 96.7 0.0012 4E-08 46.0 3.3 26 4-29 6-31 (203)
354 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00089 3.1E-08 51.1 2.8 22 8-29 32-53 (359)
355 2p5t_B PEZT; postsegregational 96.7 0.00097 3.3E-08 48.4 2.9 24 5-28 31-54 (253)
356 2bbs_A Cystic fibrosis transme 96.7 0.00097 3.3E-08 49.5 2.9 22 8-29 66-87 (290)
357 3umf_A Adenylate kinase; rossm 96.7 0.0011 3.9E-08 46.9 3.2 20 9-28 32-51 (217)
358 1ixz_A ATP-dependent metallopr 96.7 0.0011 3.8E-08 47.9 3.2 22 8-29 51-72 (254)
359 1z47_A CYSA, putative ABC-tran 96.7 0.0011 3.7E-08 50.6 3.2 22 8-29 43-64 (355)
360 3be4_A Adenylate kinase; malar 96.7 0.0011 3.7E-08 46.9 3.0 24 5-28 4-27 (217)
361 2ze6_A Isopentenyl transferase 96.6 0.0011 3.8E-08 48.1 3.1 21 8-28 3-23 (253)
362 2vli_A Antibiotic resistance p 96.6 0.00083 2.8E-08 45.9 2.2 23 6-28 5-27 (183)
363 2yyz_A Sugar ABC transporter, 96.6 0.0012 4E-08 50.5 3.2 22 8-29 31-52 (359)
364 3rlf_A Maltose/maltodextrin im 96.6 0.0012 4E-08 50.8 3.2 22 8-29 31-52 (381)
365 2it1_A 362AA long hypothetical 96.6 0.0012 4.1E-08 50.5 3.2 22 8-29 31-52 (362)
366 1sq5_A Pantothenate kinase; P- 96.6 0.0014 4.9E-08 49.0 3.5 24 5-28 79-102 (308)
367 1rj9_A FTSY, signal recognitio 96.6 0.0012 4.2E-08 49.3 3.1 22 6-27 102-123 (304)
368 2bwj_A Adenylate kinase 5; pho 96.6 0.00096 3.3E-08 46.2 2.4 23 6-28 12-34 (199)
369 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.6E-08 44.3 3.9 24 5-28 12-35 (186)
370 1g29_1 MALK, maltose transport 96.6 0.0013 4.5E-08 50.5 3.2 22 8-29 31-52 (372)
371 2z0h_A DTMP kinase, thymidylat 96.6 0.0014 4.6E-08 45.4 3.0 21 8-28 2-22 (197)
372 1v43_A Sugar-binding transport 96.6 0.0014 4.6E-08 50.4 3.2 22 8-29 39-60 (372)
373 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.5E-08 46.5 3.5 23 6-28 16-38 (233)
374 2ewv_A Twitching motility prot 96.6 0.0014 5E-08 50.3 3.3 22 7-28 137-158 (372)
375 1e6c_A Shikimate kinase; phosp 96.6 0.0015 5.1E-08 44.2 3.1 21 8-28 4-24 (173)
376 1gtv_A TMK, thymidylate kinase 96.6 0.00051 1.7E-08 48.3 0.7 21 8-28 2-22 (214)
377 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.3E-08 44.9 3.2 21 8-28 2-22 (195)
378 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.5E-08 47.2 3.3 21 7-27 28-48 (252)
379 3r20_A Cytidylate kinase; stru 96.5 0.0017 5.8E-08 46.5 3.3 24 5-28 8-31 (233)
380 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.3E-08 44.7 3.0 21 8-28 4-24 (184)
381 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0013 4.4E-08 49.8 2.7 22 8-29 173-194 (330)
382 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0016 5.5E-08 46.1 3.1 21 8-28 25-45 (235)
383 1zuh_A Shikimate kinase; alpha 96.5 0.0019 6.4E-08 43.6 3.3 22 7-28 8-29 (168)
384 2p65_A Hypothetical protein PF 96.5 0.0013 4.6E-08 44.7 2.6 23 6-28 43-65 (187)
385 2gza_A Type IV secretion syste 96.5 0.0013 4.4E-08 50.4 2.7 23 7-29 176-198 (361)
386 1iy2_A ATP-dependent metallopr 96.5 0.0016 5.6E-08 47.8 3.2 22 8-29 75-96 (278)
387 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.002 6.7E-08 47.0 3.6 23 6-28 4-26 (260)
388 3d31_A Sulfate/molybdate ABC t 96.5 0.0011 3.7E-08 50.5 2.2 22 8-29 28-49 (348)
389 3b9q_A Chloroplast SRP recepto 96.5 0.0026 9E-08 47.4 4.2 23 6-28 100-122 (302)
390 1in4_A RUVB, holliday junction 96.5 0.0016 5.6E-08 49.2 3.2 22 7-28 52-73 (334)
391 2f6r_A COA synthase, bifunctio 96.5 0.002 6.8E-08 47.5 3.5 24 5-28 74-97 (281)
392 1p9r_A General secretion pathw 96.5 0.0017 5.7E-08 50.7 3.1 22 8-29 169-190 (418)
393 3bos_A Putative DNA replicatio 96.4 0.0021 7.1E-08 45.7 3.4 23 6-28 52-74 (242)
394 3kta_A Chromosome segregation 96.4 0.0018 6E-08 44.3 2.8 21 8-28 28-48 (182)
395 2pez_A Bifunctional 3'-phospho 96.4 0.002 7E-08 43.9 3.1 23 6-28 5-27 (179)
396 3gd7_A Fusion complex of cysti 96.4 0.0017 5.8E-08 50.2 2.8 21 8-28 49-69 (390)
397 2vp4_A Deoxynucleoside kinase; 96.4 0.0022 7.5E-08 45.8 3.2 24 6-29 20-43 (230)
398 1lv7_A FTSH; alpha/beta domain 96.4 0.0021 7.3E-08 46.5 3.2 23 6-28 45-67 (257)
399 1a7j_A Phosphoribulokinase; tr 96.4 0.0012 4.2E-08 48.9 1.9 27 1-28 1-27 (290)
400 2w58_A DNAI, primosome compone 96.4 0.0026 8.8E-08 44.2 3.4 22 7-28 55-76 (202)
401 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0097 3.3E-07 45.6 6.8 19 9-27 26-44 (365)
402 1oxx_K GLCV, glucose, ABC tran 96.3 0.0011 3.7E-08 50.6 1.5 22 8-29 33-54 (353)
403 4eaq_A DTMP kinase, thymidylat 96.3 0.0035 1.2E-07 44.8 4.0 24 5-28 25-48 (229)
404 2oap_1 GSPE-2, type II secreti 96.3 0.0019 6.5E-08 51.8 2.9 23 7-29 261-283 (511)
405 2grj_A Dephospho-COA kinase; T 96.3 0.003 1E-07 43.9 3.6 24 5-28 11-34 (192)
406 2cvh_A DNA repair and recombin 96.3 0.0024 8.3E-08 44.8 3.1 21 8-28 22-42 (220)
407 1tue_A Replication protein E1; 96.3 0.002 7E-08 45.1 2.6 21 8-28 60-80 (212)
408 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0018 6.2E-08 51.1 2.6 22 8-29 140-161 (460)
409 1n0w_A DNA repair protein RAD5 96.3 0.0026 9E-08 45.4 3.2 22 8-29 26-47 (243)
410 2og2_A Putative signal recogni 96.3 0.0038 1.3E-07 47.7 4.2 23 6-28 157-179 (359)
411 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0029 1E-07 42.0 3.2 19 9-27 26-44 (149)
412 1cr0_A DNA primase/helicase; R 96.3 0.0022 7.4E-08 47.6 2.8 22 8-29 37-58 (296)
413 1m7g_A Adenylylsulfate kinase; 96.3 0.0027 9.2E-08 44.6 3.1 23 6-28 25-47 (211)
414 3n70_A Transport activator; si 96.3 0.0028 9.7E-08 41.7 3.0 24 6-29 24-47 (145)
415 2obl_A ESCN; ATPase, hydrolase 96.3 0.0025 8.7E-08 48.5 3.1 24 7-30 72-95 (347)
416 2yhs_A FTSY, cell division pro 96.2 0.0038 1.3E-07 49.6 4.1 23 6-28 293-315 (503)
417 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0065 2.2E-07 47.7 5.3 23 5-27 66-88 (457)
418 3nwj_A ATSK2; P loop, shikimat 96.2 0.0025 8.6E-08 46.2 2.8 22 7-28 49-70 (250)
419 1ltq_A Polynucleotide kinase; 96.2 0.0034 1.2E-07 46.5 3.6 22 7-28 3-24 (301)
420 1njg_A DNA polymerase III subu 96.2 0.0033 1.1E-07 44.5 3.1 21 8-28 47-67 (250)
421 2chg_A Replication factor C sm 96.2 0.0034 1.1E-07 43.9 3.1 21 8-28 40-60 (226)
422 3gmt_A Adenylate kinase; ssgci 96.1 0.0039 1.3E-07 44.5 3.4 24 5-28 7-30 (230)
423 3h4m_A Proteasome-activating n 96.1 0.0034 1.2E-07 46.1 3.2 24 6-29 51-74 (285)
424 1nij_A Hypothetical protein YJ 96.1 0.0022 7.5E-08 48.2 2.2 23 7-29 5-27 (318)
425 3b9p_A CG5977-PA, isoform A; A 96.1 0.0037 1.3E-07 46.2 3.3 23 6-28 54-76 (297)
426 3t15_A Ribulose bisphosphate c 96.1 0.0032 1.1E-07 46.7 3.0 23 6-28 36-58 (293)
427 1svm_A Large T antigen; AAA+ f 96.1 0.0034 1.2E-07 48.3 3.1 22 7-28 170-191 (377)
428 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0039 1.3E-07 45.0 3.3 23 6-28 39-61 (262)
429 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0038 1.3E-07 50.3 3.4 22 8-29 49-70 (538)
430 3crm_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 46.4 3.7 22 7-28 6-27 (323)
431 3syl_A Protein CBBX; photosynt 96.0 0.0045 1.5E-07 46.0 3.5 23 5-27 66-88 (309)
432 3euj_A Chromosome partition pr 96.0 0.0038 1.3E-07 49.5 3.2 21 8-28 31-51 (483)
433 3cf0_A Transitional endoplasmi 96.0 0.0039 1.3E-07 46.4 2.9 23 7-29 50-72 (301)
434 1d2n_A N-ethylmaleimide-sensit 96.0 0.0063 2.2E-07 44.4 4.0 25 4-28 62-86 (272)
435 3ozx_A RNAse L inhibitor; ATP 96.0 0.0039 1.3E-07 50.3 3.1 22 8-29 27-48 (538)
436 2dpy_A FLII, flagellum-specifi 96.0 0.004 1.4E-07 48.9 3.1 23 8-30 159-181 (438)
437 3d3q_A TRNA delta(2)-isopenten 96.0 0.005 1.7E-07 46.6 3.4 22 7-28 8-29 (340)
438 1l8q_A Chromosomal replication 96.0 0.0043 1.5E-07 46.5 3.1 22 7-28 38-59 (324)
439 3ake_A Cytidylate kinase; CMP 95.9 0.0062 2.1E-07 42.3 3.6 21 8-28 4-24 (208)
440 3zvl_A Bifunctional polynucleo 95.9 0.0062 2.1E-07 47.5 3.9 24 5-28 257-280 (416)
441 1nlf_A Regulatory protein REPA 95.9 0.0041 1.4E-07 45.7 2.8 21 8-28 32-52 (279)
442 3j16_B RLI1P; ribosome recycli 95.9 0.0047 1.6E-07 50.6 3.2 22 8-29 105-126 (608)
443 3b60_A Lipid A export ATP-bind 95.9 0.0042 1.4E-07 50.6 3.0 22 8-29 371-392 (582)
444 1q3t_A Cytidylate kinase; nucl 95.9 0.0059 2E-07 43.7 3.4 24 5-28 15-38 (236)
445 3b5x_A Lipid A export ATP-bind 95.9 0.0049 1.7E-07 50.2 3.2 22 8-29 371-392 (582)
446 1c9k_A COBU, adenosylcobinamid 95.9 0.0048 1.6E-07 42.3 2.7 21 9-29 2-22 (180)
447 2qmh_A HPR kinase/phosphorylas 95.8 0.0057 2E-07 42.6 3.0 23 7-29 35-57 (205)
448 2dr3_A UPF0273 protein PH0284; 95.8 0.005 1.7E-07 44.0 2.8 21 8-28 25-45 (247)
449 1ofh_A ATP-dependent HSL prote 95.8 0.0054 1.8E-07 45.4 3.1 23 6-28 50-72 (310)
450 1fnn_A CDC6P, cell division co 95.8 0.0061 2.1E-07 46.6 3.4 22 8-29 46-67 (389)
451 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0089 3E-07 45.5 4.1 23 5-27 23-45 (359)
452 2qby_A CDC6 homolog 1, cell di 95.8 0.0051 1.7E-07 46.9 2.8 23 6-28 45-67 (386)
453 3bk7_A ABC transporter ATP-bin 95.8 0.006 2E-07 49.9 3.3 22 8-29 119-140 (607)
454 2yl4_A ATP-binding cassette SU 95.8 0.0044 1.5E-07 50.6 2.5 22 8-29 372-393 (595)
455 4fcw_A Chaperone protein CLPB; 95.8 0.0086 2.9E-07 44.4 4.0 22 7-28 48-69 (311)
456 1sxj_E Activator 1 40 kDa subu 95.8 0.0048 1.6E-07 46.7 2.6 20 9-28 39-58 (354)
457 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0064 2.2E-07 49.0 3.4 22 8-29 314-335 (538)
458 3ozx_A RNAse L inhibitor; ATP 95.8 0.0057 1.9E-07 49.3 3.1 22 8-29 296-317 (538)
459 3co5_A Putative two-component 95.7 0.0029 9.9E-08 41.6 1.2 22 7-28 28-49 (143)
460 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0059 2E-07 45.9 3.0 23 7-29 46-68 (322)
461 3qf4_B Uncharacterized ABC tra 95.7 0.005 1.7E-07 50.3 2.7 21 8-28 383-403 (598)
462 3bk7_A ABC transporter ATP-bin 95.7 0.0069 2.4E-07 49.6 3.4 22 8-29 384-405 (607)
463 1sxj_C Activator 1 40 kDa subu 95.7 0.0066 2.2E-07 45.9 3.1 22 8-29 48-69 (340)
464 3eie_A Vacuolar protein sortin 95.7 0.0069 2.4E-07 45.5 3.2 23 6-28 51-73 (322)
465 2px0_A Flagellar biosynthesis 95.6 0.0059 2E-07 45.4 2.6 84 54-158 183-272 (296)
466 1vma_A Cell division protein F 95.6 0.011 3.7E-07 44.1 4.1 85 54-160 187-284 (306)
467 1pzn_A RAD51, DNA repair and r 95.6 0.0062 2.1E-07 46.4 2.8 22 8-29 133-154 (349)
468 3qks_A DNA double-strand break 95.6 0.0081 2.8E-07 42.0 3.2 19 9-27 26-44 (203)
469 4a82_A Cystic fibrosis transme 95.6 0.0042 1.4E-07 50.6 1.9 21 8-28 369-389 (578)
470 4b4t_K 26S protease regulatory 95.6 0.0069 2.4E-07 47.3 3.0 23 6-28 206-228 (428)
471 3ld9_A DTMP kinase, thymidylat 95.6 0.011 3.6E-07 42.1 3.8 26 3-28 18-43 (223)
472 3j16_B RLI1P; ribosome recycli 95.5 0.0078 2.7E-07 49.2 3.2 21 9-29 381-401 (608)
473 3foz_A TRNA delta(2)-isopenten 95.5 0.011 3.9E-07 44.0 3.8 23 6-28 10-32 (316)
474 1sxj_D Activator 1 41 kDa subu 95.5 0.0083 2.8E-07 45.3 3.1 21 8-28 60-80 (353)
475 1p5z_B DCK, deoxycytidine kina 95.5 0.0064 2.2E-07 44.2 2.4 24 5-28 23-46 (263)
476 2v1u_A Cell division control p 95.5 0.008 2.7E-07 45.9 3.1 24 5-28 43-66 (387)
477 3qf4_A ABC transporter, ATP-bi 95.5 0.0058 2E-07 49.8 2.4 21 8-28 371-391 (587)
478 2r62_A Cell division protease 95.5 0.0034 1.2E-07 45.7 0.9 22 7-28 45-66 (268)
479 3pxg_A Negative regulator of g 95.5 0.0076 2.6E-07 47.8 2.9 23 6-28 201-223 (468)
480 2qgz_A Helicase loader, putati 95.5 0.0092 3.2E-07 44.6 3.2 23 6-28 152-174 (308)
481 4b4t_L 26S protease subunit RP 95.5 0.0084 2.9E-07 47.0 3.1 24 5-28 214-237 (437)
482 3exa_A TRNA delta(2)-isopenten 95.5 0.009 3.1E-07 44.7 3.0 22 8-29 5-26 (322)
483 3uk6_A RUVB-like 2; hexameric 95.5 0.0079 2.7E-07 45.8 2.9 22 7-28 71-92 (368)
484 2h92_A Cytidylate kinase; ross 95.4 0.0086 3E-07 42.1 2.8 23 6-28 3-25 (219)
485 2iw3_A Elongation factor 3A; a 95.4 0.01 3.6E-07 51.0 3.7 24 8-31 463-486 (986)
486 3pfi_A Holliday junction ATP-d 95.4 0.0088 3E-07 45.0 3.0 24 6-29 55-78 (338)
487 2qen_A Walker-type ATPase; unk 95.4 0.0095 3.2E-07 44.8 3.2 22 8-29 33-54 (350)
488 2bjv_A PSP operon transcriptio 95.4 0.0094 3.2E-07 43.3 3.0 24 6-29 29-52 (265)
489 3tqf_A HPR(Ser) kinase; transf 95.4 0.011 3.8E-07 40.2 3.1 24 7-30 17-40 (181)
490 2ocp_A DGK, deoxyguanosine kin 95.4 0.011 3.7E-07 42.3 3.3 23 6-28 2-24 (241)
491 3uc9_A Increased recombination 95.4 0.013 4.6E-07 41.6 3.6 25 5-29 28-52 (233)
492 4b4t_M 26S protease regulatory 95.4 0.011 3.7E-07 46.3 3.5 24 5-28 214-237 (434)
493 2qp9_X Vacuolar protein sortin 95.4 0.0092 3.2E-07 45.5 3.0 22 7-28 85-106 (355)
494 3d8b_A Fidgetin-like protein 1 95.4 0.011 3.6E-07 45.2 3.3 23 6-28 117-139 (357)
495 3hws_A ATP-dependent CLP prote 95.4 0.0098 3.3E-07 45.4 3.1 23 6-28 51-73 (363)
496 3u61_B DNA polymerase accessor 95.3 0.025 8.4E-07 42.3 5.2 21 9-29 51-71 (324)
497 4b4t_J 26S protease regulatory 95.3 0.01 3.5E-07 46.0 3.0 23 6-28 182-204 (405)
498 1um8_A ATP-dependent CLP prote 95.3 0.01 3.5E-07 45.5 3.1 23 6-28 72-94 (376)
499 3te6_A Regulatory protein SIR3 95.3 0.0092 3.1E-07 44.8 2.7 24 5-28 44-67 (318)
500 3m6a_A ATP-dependent protease 95.3 0.011 3.8E-07 47.7 3.3 22 7-28 109-130 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.7e-41 Score=243.80 Aligned_cols=163 Identities=31% Similarity=0.542 Sum_probs=139.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.+||+|+|.+|||||||+++|..+.|...+.+|.+ +.....+..++..+.++||||+|+++|..+++.++++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 569999999999999999999999999999999985 4556677788889999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++++|..+ ..|+..+.... ++.|++|||||+|+.+.+. ++.++++++++.+++ +|++|||++
T Consensus 92 v~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAkt 159 (216)
T 4dkx_A 92 VYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKA 159 (216)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred EeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCCC
Confidence 9999999999999 77877776654 7899999999999987655 899999999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.||+++|++|++.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-39 Score=230.84 Aligned_cols=195 Identities=78% Similarity=1.249 Sum_probs=153.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+....++|+++|.+|+|||||+++|..+.+...+.+|....+...+.+++..+.+++|||||++.+..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 66778899999999999999999999999988888888877777777788888999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+++|||+++++++..+...|+..+....++.|+++|+||+|+.+....... ....+..+++.++++.++..+++++||
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999855899999888789999999999999765431100 112347788899999998669999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCchhhh----hhhccccccccC
Q 029215 161 KTQQNVKAVFDAAIKVVLQPPKQKK----KKKKSHRACSIL 197 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~c~~~ 197 (197)
++|.|++++|+++++.+.+.+.++. ++++++.+|+|+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 202 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA 202 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence 9999999999999999987765543 233334468774
No 3
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.4e-37 Score=217.90 Aligned_cols=181 Identities=34% Similarity=0.580 Sum_probs=148.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+..++|+++|.+|||||||+++|.++.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999988888888877777788889999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++..+ ..|...+.... ++.|+++|+||+|+.+.. +..+++..+++.++. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 77877776654 589999999999997533 577888999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhh-----hhhhccccccccC
Q 029215 162 TQQNVKAVFDAAIKVVLQPPKQK-----KKKKKSHRACSIL 197 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~-----~~~~~~~~~c~~~ 197 (197)
+|.|++++|+++.+.+.....+. +++++++.+|+||
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 99999999999999987654333 2344555568775
No 4
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=220.73 Aligned_cols=181 Identities=27% Similarity=0.485 Sum_probs=143.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|...+.+||+|+|.+|||||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 45567899999999999999999999999998888888877776666667777899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +...++..+++.++. +++++
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999998 78888777654 5899999999999976554 778889999999998 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCchhhhhhhccccccccC
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQPPKQKKKKKKSHRACSIL 197 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~ 197 (197)
||++|.|++++|++|.+.+.+.... .+++++|++|
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~ 201 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIARVENS----YGQERRCHLM 201 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred eCCCCCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence 9999999999999999998766533 2334458876
No 5
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.7e-36 Score=212.44 Aligned_cols=172 Identities=29% Similarity=0.424 Sum_probs=150.8
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|...+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 67778999999999999999999999999888888888877777788889999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... +..++++.+++.++. +++++
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES 148 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence 9999999999999998 77877776554 4899999999999976554 788999999999998 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
||++|.|++++|+++++.+...+...
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC----
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999998776443
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.7e-36 Score=213.02 Aligned_cols=172 Identities=42% Similarity=0.808 Sum_probs=153.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.+||+++|.+|+|||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.+..++..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 34679999999999999999999999999888888888887778888999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||+++++++..+...|+..+....++.|+++|+||+|+.+.. .+.+..+++..+++.++..+++++||++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999997688998888888899999999999997531 1237788999999999985599999999
Q ss_pred CCCHHHHHHHHHHHHcCCch
Q 029215 163 QQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~ 182 (197)
|.|++++|+++.+.+..++.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999987654
No 7
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=217.07 Aligned_cols=165 Identities=31% Similarity=0.551 Sum_probs=147.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+|+|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 35799999999999999999999999988888888877777778888888999999999999999988888999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++.+++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..+++.++. +++++||+
T Consensus 92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (206)
T 2bov_A 92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK 159 (206)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence 9999999999998 78887777765 3899999999999976543 678889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|++.+...
T Consensus 160 ~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999988653
No 8
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.2e-35 Score=208.69 Aligned_cols=181 Identities=64% Similarity=1.059 Sum_probs=153.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999988888888877777777888999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++......|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 9999999999998557988888877799999999999997642100 00011233677888999999986689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchhh
Q 029215 162 TQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
+|.|++++|+++.+.+.+++..+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC--
T ss_pred CccCHHHHHHHHHHHHhcccccC
Confidence 99999999999999998776443
No 9
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-35 Score=210.02 Aligned_cols=177 Identities=53% Similarity=1.004 Sum_probs=151.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|.+|+|||||+++|..+.+...+.+|....+...+..++..+.+++||+||++++..++..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999888888888877777777778888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++.++++.++..+++++||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 9999999999998558988888877899999999999997642110 11112234678899999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++++.+..+
T Consensus 176 ~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp TCTTHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999988653
No 10
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=9.2e-37 Score=213.78 Aligned_cols=180 Identities=93% Similarity=1.453 Sum_probs=135.0
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|+..+.++|+++|.+|+|||||++++..+.+...+.+|....+...+..++..+.+++|||||++.+..++..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 56778899999999999999999999999888888888766655555566777889999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+++|||++++.++..+...|+..+....++.|+++|+||+|+.+.............+..+++..+++.++..+++++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999999985579988888777899999999999976543111112223357788899999998769999999
Q ss_pred CCCCCHHHHHHHHHHHHcCC
Q 029215 161 KTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~ 180 (197)
++|.|++++|+++.+.+.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
No 11
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=8.4e-36 Score=214.44 Aligned_cols=180 Identities=34% Similarity=0.643 Sum_probs=150.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+|+|.+|||||||+++|..+.+...+.+|....+...+..++..+.+++|||+|++.+..++..+++++|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35799999999999999999999999998888888877777777788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++......|+..+....++.|+++|+||+|+.++.... ......+.+..+++..+++.+++.+++++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 9999999999995589999998888899999999999997631000 00011234788899999999998789999999
Q ss_pred CCCC-HHHHHHHHHHHHcCCchh
Q 029215 162 TQQN-VKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 162 ~~~~-i~~~~~~i~~~~~~~~~~ 183 (197)
+|.| ++++|+++.+.+..+...
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999999876543
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=211.38 Aligned_cols=179 Identities=51% Similarity=0.886 Sum_probs=143.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
....++|+++|.+|||||||+++|..+.+...+.+|+...+...+..++..+.+++|||||++.+..++..++.++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 34679999999999999999999999888888888887777777888888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+|||+++++++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++..+++.++..+++++||
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999998557988888877899999999999997532100 0001123367788999999998768999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|+++.+.+.+++
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999886543
No 13
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.8e-35 Score=207.85 Aligned_cols=177 Identities=35% Similarity=0.709 Sum_probs=149.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+...++|+++|++|||||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.|..++..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45689999999999999999999999998888888887766667777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+|||+++++++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++.++++.++..+++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999988678888888877899999999999997531100 0111223477889999999988559999999
Q ss_pred C-CCCCHHHHHHHHHHHHcC
Q 029215 161 K-TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~-~~~~i~~~~~~i~~~~~~ 179 (197)
+ ++.|++++|+++.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998865
No 14
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-36 Score=213.12 Aligned_cols=182 Identities=26% Similarity=0.474 Sum_probs=143.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
....++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45679999999999999999999999988777777776666666777888899999999999999988888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
+|||++++.++... ..|+..+.... ++.|+++|+||+|+.+.. +..+++..++..++. +++++|
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence 99999999999887 55655554432 478999999999997532 567788889999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCchh----------hhhhhccccccccC
Q 029215 160 SKTQQNVKAVFDAAIKVVLQPPKQ----------KKKKKKSHRACSIL 197 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~~~----------~~~~~~~~~~c~~~ 197 (197)
|++|.|++++|++|.+.+..++.. .+.+++++++|++|
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~ 199 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSSSCEECC----------------------
T ss_pred cCCCCCHHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence 999999999999999988765321 11223445669886
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=204.29 Aligned_cols=169 Identities=32% Similarity=0.561 Sum_probs=146.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+++|.+|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999999888766666664 44456677888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... +..+++..++...+. +++++||+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK 153 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 999999999999998 789888888878999999999999976554 677888999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCchh
Q 029215 162 TQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
+|.|++++|+++.+.+.+.+.+
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998765443
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=207.32 Aligned_cols=164 Identities=24% Similarity=0.425 Sum_probs=141.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.+||+++|.+|||||||+++|..+.+...+.+|....+...+..++..+.+++|||||++.+..+ ..+++++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45679999999999999999999999998888888887777677778888899999999999988875 56888999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+...+. +..+++.++++.++. +++++
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~ 164 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEV 164 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEE
Confidence 99999999999998 78887776653 5899999999999976544 778899999999998 99999
Q ss_pred cc-CCCCCHHHHHHHHHHHHcC
Q 029215 159 SS-KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 159 Sa-~~~~~i~~~~~~i~~~~~~ 179 (197)
|| ++|.|++++|+++++.+.+
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHC
T ss_pred eecCccccHHHHHHHHHHHHhh
Confidence 99 8999999999999998754
No 17
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.3e-35 Score=208.18 Aligned_cols=167 Identities=28% Similarity=0.578 Sum_probs=117.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+++|.+|||||||+++|..+.+...+.++.... ....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999888776666666433 3456667888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..++++++++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 77888887764 5899999999999976543 678889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 029215 162 TQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+|.|++++|+++.+.+.++..
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999876543
No 18
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=210.89 Aligned_cols=179 Identities=44% Similarity=0.851 Sum_probs=131.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35799999999999999999999998887778888877777777888988999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++..+...|+..+....++.|+++|+||+|+....... ......+.+..+++..+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 9999999999998558998888877899999999999997653210 00011224677888999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 029215 162 TQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+|.|++++|+++.+.+.+.+.
T Consensus 192 ~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999876543
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=6.9e-35 Score=204.52 Aligned_cols=164 Identities=34% Similarity=0.542 Sum_probs=146.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|+|||||+++|..+.+...+.++....+......++..+.+++|||||++.+..++..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999988888888877777788889999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+. +..++++++++.++. +++++||+
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 163 (183)
T 3kkq_A 96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK 163 (183)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence 9999999999988 67777665532 5899999999999976554 788899999999997 99999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 029215 162 -TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 -~~~~i~~~~~~i~~~~~~ 179 (197)
++.|++++|+++.+.+.+
T Consensus 164 ~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 999999999999998754
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.8e-34 Score=199.94 Aligned_cols=165 Identities=29% Similarity=0.597 Sum_probs=136.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45689999999999999999999999988777777764433 45666778889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++.++++..+. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999988 78877776654 5899999999999976543 677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|.|++++|+++.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998754
No 21
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=7e-35 Score=208.30 Aligned_cols=176 Identities=35% Similarity=0.713 Sum_probs=148.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|||||||+++|..+.+...+.+|....+...+.+++..+.+++|||||++.|..++..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999988888888876666667778888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..++++++++.++..+++++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 9999999999988678888888877899999999999997531100 00112234778889999999885599999999
Q ss_pred -CCCCHHHHHHHHHHHHcC
Q 029215 162 -TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 -~~~~i~~~~~~i~~~~~~ 179 (197)
++.|++++|+++++.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998764
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-34 Score=203.77 Aligned_cols=165 Identities=23% Similarity=0.350 Sum_probs=141.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+.+.+||+++|.+|||||||++++..+.+...+.++. ..+...+.+++..+.+++|||+|++.+. +++++|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 34578999999999999999999999999887777774 4455778889999999999999998877 66779999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.... .+.+..+++.++++.++..+++++|
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence 999999999999998 77988887764 589999999999995321 1237888999999999855999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCc
Q 029215 160 SKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (197)
|++|.|++++|+++++.+.+.+
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999886543
No 23
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3.1e-34 Score=204.32 Aligned_cols=176 Identities=49% Similarity=0.884 Sum_probs=150.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...+||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 35799999999999999999999999888888888776666667788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++......|...+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 9999999999988678888888877899999999999997652110 01111234677889999999987789999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998753
No 24
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-34 Score=205.55 Aligned_cols=178 Identities=48% Similarity=0.863 Sum_probs=145.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999999888777788776666667788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++......|+..+....++.|+++|+||+|+....... ......+.+..+++..++...+..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 9999999999988678888888877899999999999997642110 00011123677888899999887789999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+|.|++++|++|.+.+.+++
T Consensus 183 ~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 25
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=6.8e-35 Score=208.22 Aligned_cols=174 Identities=64% Similarity=1.078 Sum_probs=148.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.+||+++|.+|||||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999998888888887777788888888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++......|+..+....++.|+++|+||+|+....... ......+.+..+++..+++.++..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 9999999999998558999998888899999999999997653211 01112233677889999999998789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIKVV 177 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (197)
+|.|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1e-34 Score=200.46 Aligned_cols=163 Identities=31% Similarity=0.563 Sum_probs=142.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 56999999999999999999999998888888888777777777888889999999999999998888899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||+++++++... ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++.++. +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 77877776654 3899999999999976543 678889999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.|++++|+++.+.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 27
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.5e-34 Score=199.69 Aligned_cols=163 Identities=29% Similarity=0.538 Sum_probs=142.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++||+||++.+..++..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999998888888888777776777788889999999999999999988899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||++++.++... ..|+..+... .++.|+++|+||+|+.+.+. +..+++..+++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999988 6677666554 25899999999999976543 6778889999988444999999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029215 163 QQNVKAVFDAAIKVVL 178 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~ 178 (197)
|.|++++|+++.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998874
No 28
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=206.48 Aligned_cols=165 Identities=30% Similarity=0.580 Sum_probs=144.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|||||||+++|..+.+...+.++.. +.....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999988777777764 444556778888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++..+. +++++||+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888887765 5899999999999976543 677888899998887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+...
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=4.5e-34 Score=204.09 Aligned_cols=165 Identities=30% Similarity=0.606 Sum_probs=144.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+..++|+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+|||||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 34579999999999999999999999988777777765443 45677788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..++...+. +++++||
T Consensus 85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA 152 (206)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999998 77888887765 5899999999999976544 677888999999987 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|.|++++|+++.+.+.+
T Consensus 153 ~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4e-34 Score=200.13 Aligned_cols=166 Identities=33% Similarity=0.562 Sum_probs=143.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|.+|+|||||++++..+.+...+.++.... ....+..++..+.+++||+||++.+...+..+++++|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 457999999999999999999999998877766666433 3456667888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++... ..|+..+.... ++.|+++|+||+|+.+... +..++++.+++..+. +++++||+
T Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence 99999999999988 78887777765 6899999999999976544 678889999999987 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+|.|++++|++|.+.+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999887654
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=9.3e-35 Score=203.02 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=137.3
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|...+.+||+++|.+|||||||+++|..+.+.. +.+|....+...+.+++..+.+++|||||++. ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 667788999999999999999999999998876 67777766777788888889999999999986 345678999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhh---hC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 81 FILAFSLISKASYENVAKKWIPELRH---YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+++|||+++++++..+ ..|+..+.. .. ++.|+++|+||+|+.... .+.+..+++.++++..+..+++
T Consensus 76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999998 666544433 22 589999999999995321 1236788889999887544999
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++||++|.|++++|+++++.+.+.+
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.4e-34 Score=198.83 Aligned_cols=165 Identities=35% Similarity=0.552 Sum_probs=143.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.+..++|+++|++|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999988777777764 34456677788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
++|||++++.++... ..|+..+....++.|+++|+||+|+.+... +..++++.+++..+. +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999988 778877766657899999999999976543 667888999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
++.|++++|+++.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998764
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=203.36 Aligned_cols=167 Identities=31% Similarity=0.606 Sum_probs=146.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+|+|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 3579999999999999999999999988777777664 444566778888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..++..++. +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999998 77888887765 5899999999999977654 677889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 029215 162 TQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+|.|++++|+++.+.+.++..
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999876543
No 34
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=200.68 Aligned_cols=164 Identities=24% Similarity=0.374 Sum_probs=129.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--ccccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~~~~ 81 (197)
.+.++|+++|++|||||||+++|.+..+...+.....+.+...+.+++..+.+++|||||++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999887755444333344556677888889999999999987 566667788899999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
++|||++++.++..+ ..|...+.... ++.|+++|+||+|+.+.+. +..++++.++..++. +++++|
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence 999999999999998 67877776653 5899999999999976544 677888889999987 999999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 029215 160 SKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~ 179 (197)
|++|.|++++|++|.+.+..
T Consensus 150 a~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.6e-34 Score=198.22 Aligned_cols=164 Identities=31% Similarity=0.551 Sum_probs=141.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||+++|..+.+...+.++....+ ...+..++..+.+++||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999888777666664433 456667888899999999999999999989999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++... ..|+..+.... ++.|+++|+||+|+.+... +..+++.+++...+. +++++||+
T Consensus 84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1r2q_A 84 VVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999988 77877776654 6899999999999976443 667888899998887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 152 ~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 152 TSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TCTTHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987643
No 36
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.5e-34 Score=201.06 Aligned_cols=164 Identities=32% Similarity=0.637 Sum_probs=143.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
+..++|+|+|.+|+|||||+++|..+.+...+.++....+ ...+...+..+.+++|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 4579999999999999999999999988777666664333 445667788899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++... ..|+..+.... ++.|+++|+||+|+.+... +..++++++++.++. +++++||+
T Consensus 100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 167 (189)
T 2gf9_A 100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK 167 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999988 77888887765 6899999999999976543 667888999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 168 ~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.4e-34 Score=202.34 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=145.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
....++|+++|.+|+|||||+++|.++.+...+.++....+...+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 34679999999999999999999999998888888887777777888888899999999999999999888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 83 LAFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
+|||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence 99999999999988 6676665 4333 5899999999999976544 677888899988887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|++|.+.+.+..
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999886543
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-34 Score=206.44 Aligned_cols=167 Identities=30% Similarity=0.524 Sum_probs=137.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+|+|.+|||||||+++|..+.+...+.++....+ ...+.+++..+.+++|||||++.+..++..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777765443 456777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..+++..+. +++++||+
T Consensus 91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887765 5899999999999976543 677888999999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 029215 162 TQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (197)
+|.|++++|++|++.+.+...
T Consensus 159 ~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp -CCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999876543
No 39
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=206.91 Aligned_cols=166 Identities=30% Similarity=0.517 Sum_probs=138.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+.+|.... ....+.+++..+.+++|||||++.+..++..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 457999999999999999999999998877777776433 3566777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++++++..+..+++++||+
T Consensus 107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence 99999999999988 78888887765 6899999999999976543 678889999999987689999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 176 ~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988643
No 40
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.3e-34 Score=203.36 Aligned_cols=165 Identities=28% Similarity=0.553 Sum_probs=140.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+|+|.+|+|||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 457999999999999999999999998877666665433 3456777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..++++.+++..+. +++++||+
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 77888777664 6899999999999976543 677888999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 167 ~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.2e-34 Score=199.51 Aligned_cols=165 Identities=30% Similarity=0.566 Sum_probs=143.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+|+|.+|+|||||+++|..+.+...+.++.... ....+..++..+.+.+|||||++.+...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 3467999999999999999999999998877777776543 345666788889999999999999999888899999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..++++++++.++. +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999988 78888777765 6899999999999976543 677889999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|.|++++|+++.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 42
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.2e-34 Score=198.01 Aligned_cols=161 Identities=24% Similarity=0.388 Sum_probs=119.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.+||+++|.+|+|||||++++.+..+. ...++....+...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999866543 2334444455566778899999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+++++++... ..|...+.... ++.|+++|+||+|+.+... +..+++..++...+. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH 148 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence 99999999998 67776666543 5899999999999987654 788889999999997 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029215 164 QNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (197)
.|++++|+++.+.+..
T Consensus 149 ~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 149 HNVQALFEGVVRQIRL 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-34 Score=197.39 Aligned_cols=166 Identities=31% Similarity=0.537 Sum_probs=142.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.++|+++|++|+|||||++++..+.+...+.++.... ....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998877777776443 34566778888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++.++... ..|+..+.... ++.|+++|+||+|+.+... ...+..+++..+++..+. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999988 77887777665 6899999999999976421 123677888899999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.|++++|+++.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887653
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=197.32 Aligned_cols=166 Identities=34% Similarity=0.635 Sum_probs=134.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
+..++|+++|.+|+|||||+++|..+.+. ..+.++....+ ...+..++..+.+++|||||++.+...+..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 46799999999999999999999998874 35556654333 44557788889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..+++.++. +++++||
T Consensus 88 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 155 (180)
T 2g6b_A 88 LLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSA 155 (180)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999988 78888877765 5899999999999976544 677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCc
Q 029215 161 KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|.|++++|+++.+.+.++.
T Consensus 156 ~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 156 KTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-33 Score=195.42 Aligned_cols=163 Identities=25% Similarity=0.540 Sum_probs=142.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|++|+|||||++++.++.+...+.++.+..+ ...+...+..+.+.+|||||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999988777777765433 456667888899999999999999999988999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++... ..|+..+.... +..|+++|+||+|+.+... +..+++..+++..+. +++++||+
T Consensus 84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1z0j_A 84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888887764 6899999999999976543 677888899999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHc
Q 029215 162 TQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~ 178 (197)
+|.|++++|++|.+.+.
T Consensus 152 ~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 152 NAININELFIEISRRIP 168 (170)
T ss_dssp TTBSHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999998764
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.4e-34 Score=201.90 Aligned_cols=168 Identities=27% Similarity=0.411 Sum_probs=142.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECC-eEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
..+.++|+++|.+|||||||+++|..+.+...+.+|.. +.....+..++ ..+.+++|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999887666666663 44455666665 67899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
+++|||+++++++..+ ..|+..+.... .+.| +++|+||+|+.+... +..+++..+++..+. +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence 9999999999999888 78877776643 2556 799999999976543 677888999999997 999
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
++||++|.|++++|++|.+.+...+.
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999877653
No 47
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-34 Score=204.78 Aligned_cols=166 Identities=30% Similarity=0.497 Sum_probs=143.0
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
|...+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345678999999999999999999999999888888888777777777888889999999999988 6677778889999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..+++..+++.++. +++++
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 169 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC 169 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence 9999999999999988 77777776643 5899999999999976543 678889999999987 99999
Q ss_pred ccCCCC-CHHHHHHHHHHHHcC
Q 029215 159 SSKTQQ-NVKAVFDAAIKVVLQ 179 (197)
Q Consensus 159 Sa~~~~-~i~~~~~~i~~~~~~ 179 (197)
||++|. |++++|+++++.+.+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHHHh
Confidence 999999 999999999998864
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.2e-34 Score=202.32 Aligned_cols=163 Identities=31% Similarity=0.564 Sum_probs=145.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999998888888888777777778888889999999999999999888899999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||+++++++... ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++.++. +++++||++
T Consensus 97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (187)
T 2a9k_A 97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT 164 (187)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999988 77777776655 3899999999999976543 677888999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
+.|++++|++|.+.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 165 RANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.3e-34 Score=200.06 Aligned_cols=165 Identities=28% Similarity=0.512 Sum_probs=143.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+|+|++|||||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999988777777765 344556777888889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... +..+++.++++..+. +++++||+
T Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 99999999999988 77877776654 6899999999999976443 677888899999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+.++
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.1e-34 Score=197.53 Aligned_cols=163 Identities=24% Similarity=0.386 Sum_probs=128.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccc-cccCCCCCCcEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL 83 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 83 (197)
.+||+++|.+|||||||+++|.+..+.....++. .+.....+..++..+.+.+||+||++.+.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998766544333333 455566677889899999999999998876 66667888999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..+++..+. +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA 149 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence 9999999999998 77777776665 3899999999999976544 788899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+..+
T Consensus 150 ~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=201.35 Aligned_cols=165 Identities=29% Similarity=0.611 Sum_probs=144.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+|+|.+|||||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 457999999999999999999999998877777776433 3455667888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++..+++.++. +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence 99999999999988 77888887765 5899999999999976544 677889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 154 ~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICEK 172 (203)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.6e-34 Score=197.02 Aligned_cols=162 Identities=30% Similarity=0.578 Sum_probs=142.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|++|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999998888888887776677778888889999999999999998888889999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||++++.++... ..|...+.... .+.|+++|+||+|+.+... +..+++..+++.++. +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999988 66666665543 5899999999999976543 677888899999987 899999999
Q ss_pred CCCHHHHHHHHHHHHc
Q 029215 163 QQNVKAVFDAAIKVVL 178 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~ 178 (197)
|.|++++|+++.+.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998763
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.8e-34 Score=200.83 Aligned_cols=166 Identities=26% Similarity=0.525 Sum_probs=142.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+...+..+.+++|||||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4579999999999999999999999988777777765443 445566777889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+. +..++++++++.++. +++++||+
T Consensus 101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 168 (192)
T 2fg5_A 101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK 168 (192)
T ss_dssp EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 88888887765 5899999999999975443 677889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCc
Q 029215 162 TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~ 181 (197)
+|.|++++|++|.+.+.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp TTBSHHHHHHHHHHTCC---
T ss_pred CCcCHHHHHHHHHHHHHhhC
Confidence 99999999999999876543
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=6.8e-34 Score=196.90 Aligned_cols=163 Identities=32% Similarity=0.642 Sum_probs=136.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++|+++|++|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999988777667665433 4556667778899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... . +..+++.++++.++. +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAKN 148 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-C----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-c----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999888 78888777765 58999999999999432 2 567888899999997 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.|++++|+++.+.+.++
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=199.97 Aligned_cols=165 Identities=30% Similarity=0.503 Sum_probs=142.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+.++.+. .....+...+..+.+.+|||||++.+..++..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999887776666543 33456667888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..... +..++++.++...+. +++++||+
T Consensus 103 ~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 170 (193)
T 2oil_A 103 LVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSAL 170 (193)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 77887777654 5899999999999976543 677888999999887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 171 DSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.5e-33 Score=197.01 Aligned_cols=163 Identities=34% Similarity=0.565 Sum_probs=134.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..++|+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 56999999999999999999999998887778887777777778888889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||+++..++..+ ..|+..+.... .+.|+++|+||+|+.... +..++++++++.++. +++++||++
T Consensus 100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 999999999988 78877776654 389999999999997622 567888999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.|++++|++|.+.+.+.
T Consensus 167 ~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=4.1e-33 Score=194.33 Aligned_cols=166 Identities=34% Similarity=0.627 Sum_probs=138.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
....++|+++|++|+|||||++++..+.+...+.++... .....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 346799999999999999999999998887777777643 3456677888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+. . +..+++.++++.....+++
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-Q----------VSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHTTCCCEE
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccccc-c----------cCHHHHHHHHHhcCCceEE
Confidence 999999999999988 77777765543 57899999999999732 2 6778888888855444999
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++||++|.|++++|+++.+.+.+.
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 152 ETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 58
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=203.49 Aligned_cols=165 Identities=30% Similarity=0.525 Sum_probs=134.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++.++|+|+|.+|||||||+++|..+.+...+.++... .....+..++..+.+++|||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887776676643 33556677888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... +...++..+++..+. +++++||+
T Consensus 103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~ 170 (200)
T 2o52_A 103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL 170 (200)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78877776654 6899999999999976543 667888899999987 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+.++
T Consensus 171 ~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 171 TGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-34 Score=197.33 Aligned_cols=164 Identities=27% Similarity=0.503 Sum_probs=140.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
+.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+++|||||++.+..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 56899999999999999999999988877777777666666677788888999999999999998888888999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
||++++.++... ..|+..+.... ++.|+++|+||+|+.+... +...++..++..++. +++++||+
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~ 149 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK 149 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence 999999999887 66666565532 5899999999999976544 667788888888887 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 150 ~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 150 LNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTBSHHHHHHHHHHTCCSS
T ss_pred CCcCHHHHHHHHHHHHhhh
Confidence 9999999999999877554
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=201.74 Aligned_cols=171 Identities=30% Similarity=0.480 Sum_probs=135.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+|+|.+|+|||||+++|..+.+...+.++.+. .....+.+++..+.+++|||||++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 346799999999999999999999999887777676653 3345677788889999999999999998888889999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... ....+.+..+++..+++..+. +++++||
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA 178 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSA 178 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence 999999999999998 78888887765 5899999999999963210 001223677888999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 029215 161 KTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~ 179 (197)
++|.|++++|+++++.+.+
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 61
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.4e-33 Score=199.39 Aligned_cols=165 Identities=32% Similarity=0.566 Sum_probs=141.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee--EEEEECCe---------EEEEEEEEcCCccccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~ 72 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+.++....+. ..+..++. .+.+++|||||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 35799999999999999999999998887777777654443 34445554 78999999999999999999
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 150 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.+++++|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... +..+++++++...
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence 999999999999999999999988 78888777665 5899999999999976543 6778889999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+. +++++||++|.|++++|++|.+.+.++
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 97 999999999999999999999998654
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=201.71 Aligned_cols=163 Identities=24% Similarity=0.436 Sum_probs=133.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (197)
...+||+|+|.+|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 35699999999999999999999864 3444444444455566677889889999999999876 55566778889999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++|..+ ..|...+.... +++|+++|+||+|+.+.+. +..++++.++..+++ +++++
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~ 182 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET 182 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 67776665432 5899999999999976443 677788888889987 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHc
Q 029215 159 SSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~ 178 (197)
||++|.|++++|+++++.+.
T Consensus 183 SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 63
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=201.84 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=136.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC-ceeeceeEEEEECCeEEEEEEEEcCCcccccc-cccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~ 81 (197)
...++|+++|.+|||||||+++|.+......+.+ +..+.+...+.+++..+.+++|||+|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 4579999999999999999999975433222222 33444556677889899999999999987764 667778889999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
++|||++++.+|..+ ..|+..+.... .+.|+++|+||+|+...+. +..++++.+++.++. +++++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999998 77887777654 4899999999999976544 678889999999987 999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCc
Q 029215 160 SKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~~~ 181 (197)
|++|.|++++|+++++.+..++
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887544
No 64
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.5e-33 Score=200.22 Aligned_cols=166 Identities=30% Similarity=0.553 Sum_probs=139.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+|+|.+|+|||||+++|.+..+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999988777777763 444556667777889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+... . +..+++..++......++++
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-Q----------VATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-C----------SCHHHHHHHHHHTTSCCEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCccc-c----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999988 77776665543 47899999999999732 2 56778888888444348999
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCc
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+||++|.|++++|++|.+.+.+.+
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=201.40 Aligned_cols=165 Identities=32% Similarity=0.558 Sum_probs=135.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+|+|.+|+|||||+++|..+.+...+.++.. +.....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999887766666663 444556777888899999999999999988888999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++.....+++++||+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999999998 78888887766 4899999999999976543 677888889888633499999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
+|.|++++|++|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.9e-33 Score=196.17 Aligned_cols=163 Identities=34% Similarity=0.566 Sum_probs=141.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++|+|+|++|+|||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 469999999999999999999999888777777664 4455667788888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|||++++.++... ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||++
T Consensus 93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (179)
T 2y8e_A 93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKA 160 (179)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999988 77777766554 5899999999999976543 677888889999987 999999999
Q ss_pred CCCHHHHHHHHHHHHcC
Q 029215 163 QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~ 179 (197)
|.|++++|++|.+.+.+
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987654
No 67
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=4.5e-33 Score=198.25 Aligned_cols=165 Identities=28% Similarity=0.498 Sum_probs=138.9
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeE--------------------------
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST-------------------------- 53 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (197)
|..++.++|+|+|++|+|||||+++|.+..+...+.++....+ ...+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7778899999999999999999999999988777777764333 3344444433
Q ss_pred -----------EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029215 54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122 (197)
Q Consensus 54 -----------~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 122 (197)
+.+.+|||||++.+...+..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-
Confidence 7899999999999999988999999999999999999999988 78887777654 499999999999
Q ss_pred cCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 123 RDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
..... +..++++++++..+. +++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33322 677889999999998 99999999999999999999988753
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-33 Score=197.12 Aligned_cols=168 Identities=30% Similarity=0.574 Sum_probs=126.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEEC-CeEEEEEEEEcCCcccccccccCCCCCCcE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~ 80 (197)
..+.++|+++|++|+|||||++++..+.+...+.++.. +.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34689999999999999999999999988777777764 3334455555 556889999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..... .+..+++.++++..+..++
T Consensus 85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence 9999999999999988 77776665543 5899999999999954321 2567888888885544589
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+++||++|.|++++|+++.+.+.+.
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988643
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2e-34 Score=205.86 Aligned_cols=169 Identities=25% Similarity=0.366 Sum_probs=110.4
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCcee-eceeEEEEECCe--EEEEEEEEcCCcccccccccCCCC
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYR 76 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~ 76 (197)
.....++|+|+|.+|+|||||+++|.++ .+...+.+|.. +.....+.+++. .+.+++|||||++.+..++..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456799999999999999999999998 77777777775 455666777776 789999999999999999999999
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccC-CcccccCCCCCccccHHHHHHHHHHhC
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLDLRD-DKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
++|++++|||++++.++..+ ..|+..+....+ +.|+++|+||+|+.+ ... +..+++..+++.++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT 164 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence 99999999999999999998 788888877653 899999999999976 443 67889999999999
Q ss_pred CCeEEEeccCC-CCCHHHHHHHHHHHHcCCch
Q 029215 152 SPAYIECSSKT-QQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 152 ~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~ 182 (197)
. +++++||++ |.|++++|++|.+.+.+...
T Consensus 165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp C-EEEECCC-------CHHHHHHHHHHHHHHH
T ss_pred C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 7 999999999 99999999999998875543
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.7e-33 Score=197.54 Aligned_cols=163 Identities=29% Similarity=0.524 Sum_probs=138.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCccccc-ccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~ 81 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+.++... .....+..++..+.+++|||||++.+. .++..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 45799999999999999999999999887777777643 345567778888999999999999888 7888889999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEec
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECS 159 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (197)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++..+. +++++|
T Consensus 98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence 999999999999988 77887777664 5899999999999976543 677888999999997 999999
Q ss_pred cCCC---CCHHHHHHHHHHHHc
Q 029215 160 SKTQ---QNVKAVFDAAIKVVL 178 (197)
Q Consensus 160 a~~~---~~i~~~~~~i~~~~~ 178 (197)
|+++ .|++++|++|++.+.
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC----
T ss_pred CCcCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999988764
No 71
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=195.09 Aligned_cols=165 Identities=29% Similarity=0.591 Sum_probs=143.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
+.++|+|+|.+|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 4699999999999999999999999887777777643 334566778888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. +..+++..+++..+. +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999988 78888887765 589999999999995422 567888899999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCch
Q 029215 162 TQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~~~ 182 (197)
++.|++++|++|.+.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999887653
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-34 Score=204.43 Aligned_cols=165 Identities=30% Similarity=0.596 Sum_probs=144.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+|+|.+|||||||+++|..+.+...+.++.... ....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 357999999999999999999999988877776666433 3455666777789999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... +..++++.+++.++. +++++||+
T Consensus 101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999988 77988888766 6899999999999976544 778889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+.++
T Consensus 169 ~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.5e-33 Score=190.94 Aligned_cols=161 Identities=34% Similarity=0.578 Sum_probs=142.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEE
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF 85 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (197)
.++|+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 58999999999999999999999988877788877777777778888899999999999999888888889999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCC
Q 029215 86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQ 163 (197)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (197)
|+++..++... ..|+..+.... .+.|+++|+||+|+.+.. ...+++.++++.++. +++++||++|
T Consensus 83 d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (166)
T 2ce2_X 83 AINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKTR 149 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999988 77877776654 389999999999997632 567888899999997 9999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 029215 164 QNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 164 ~~i~~~~~~i~~~~~~ 179 (197)
.|++++|+++.+.+.+
T Consensus 150 ~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 150 QGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.1e-33 Score=203.73 Aligned_cols=166 Identities=36% Similarity=0.617 Sum_probs=140.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCe----------EEEEEEEEcCCccccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~~ 72 (197)
++.++|+|+|.+|||||||+++|..+.+...+.++....+ ...+.+++. .+.+++|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4679999999999999999999999888766666654333 334555544 68899999999999998888
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 150 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
.+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++.++++.+
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~ 171 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKY 171 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHHC
Confidence 999999999999999999999988 78888776654 5899999999999976543 6778899999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 151 GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+. +++++||+++.|++++|++|.+.+.++.
T Consensus 172 ~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 172 GI-PYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 97 8999999999999999999999887643
No 75
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=197.58 Aligned_cols=164 Identities=32% Similarity=0.614 Sum_probs=140.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceee-ceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+|+|.+|+|||||+++|....+...+.++... .....+..++..+.+++|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999998887776676643 33456777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.. .. +..+++..++..++. +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-cc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999988 78888777765 4799999999999943 22 567788889999997 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.+.
T Consensus 165 ~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TTBSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.5e-32 Score=194.34 Aligned_cols=165 Identities=24% Similarity=0.441 Sum_probs=131.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh--CCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc-ccccccCCCCCCcE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV 80 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~ 80 (197)
...+||+++|.+|||||||+++|.+ ..+...+.++..+.+...+.+++..+.+.+|||+|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4579999999999999999999985 33444444444455566677889889999999999876 55566777788999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 81 FILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
+++|||++++++|... ..|...+.... ++.|+++|+||+|+...+. +..+++..++...+. +++++
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~ 151 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET 151 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence 9999999999999988 77776666542 5899999999999975443 667788888888887 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHcCC
Q 029215 159 SSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 159 Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
||++|.|++++|+++++.+...
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988543
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2e-33 Score=199.08 Aligned_cols=165 Identities=23% Similarity=0.272 Sum_probs=131.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCC-----------Cceeec-eeEEE-EECCeEEEEEEEEcCCcccccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----------PTVFDN-FSANV-VVDGSTVNLGLWDTAGQEDYNR 69 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-----------~t~~~~-~~~~~-~~~~~~~~l~i~D~~G~~~~~~ 69 (197)
.++.+||+++|.+|||||||++.+. +.+...+. +|.... ....+ ..++..+.+++|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 4568999999999999999996554 44444432 233221 11222 3456778999999999999999
Q ss_pred cccCCCCCCcEEEEEEeCC------CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 70 LRPLSYRGADVFILAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
++..+++++|++++|||++ +.+++..+ ..|+..+....++.|+++|+||+|+.+. +..+++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~ 156 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV 156 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence 9999999999999999999 55677776 6777777555579999999999999664 577888
Q ss_pred HHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 144 EELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+++++..+..+++++||++|.|++++|+++.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 99999888768999999999999999999999887544
No 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=7.7e-32 Score=205.39 Aligned_cols=176 Identities=63% Similarity=1.078 Sum_probs=151.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 84 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (197)
..++|+++|.+|+|||||++++..+.+...+.+|+...+...+..++..+.+++|||||++.+...+..+++++|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999999988888888877777788899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--cCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
||++++.++..+...|+..+....++.|+++|+||+|+.+..... ......+.+..+++..+++..+..+++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999998558888888877799999999999997542100 000112346788999999999876899999999
Q ss_pred CCCHHHHHHHHHHHHcCC
Q 029215 163 QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~ 180 (197)
|.|++++|+++.+.+.++
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988765
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.3e-32 Score=198.23 Aligned_cols=167 Identities=28% Similarity=0.444 Sum_probs=137.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
...+||+|+|.+|||||||+++|.++.+...+.++..... ...... .+..+.+.+|||||++.+..++..++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999998887766666654333 233333 34458899999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence 999999999999998 78888777665 4699999999999976544 677888888888887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCch
Q 029215 161 KTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 161 ~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
++|.|++++|+++.+.+.....
T Consensus 157 ~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999877653
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=203.81 Aligned_cols=165 Identities=32% Similarity=0.620 Sum_probs=133.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.+||+|+|.+|||||||+++|..+.+...+.++.. +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999998887666556554 334556777888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+... +..+++..++..++. +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 78888887766 5899999999999976543 455567788888887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|++|.+.+.++
T Consensus 179 ~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp --HHHHHHHHHHTTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999877654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.8e-32 Score=192.36 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=124.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
.....+|+|+|.+|||||||+++|..+.+.. .+.+|...... .+...+ +.+++|||||++.+..++..+++++|++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 3467999999999999999999999998877 66777653322 233334 7888999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-HHHhC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-RKLIG 151 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (197)
++|||+++++++... ..|+..+.... ++.|+++|+||+|+..... ...+........ ++..+
T Consensus 91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence 999999999999998 55655544331 2899999999999976521 000111111111 13345
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
. +++++||++|.|++++|++|.+.+.+..
T Consensus 163 ~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 F-VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp E-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred e-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 5 8999999999999999999999887554
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=7.8e-33 Score=199.78 Aligned_cols=165 Identities=28% Similarity=0.478 Sum_probs=140.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...+||+++|.+|||||||+++++.+.+...+.++.+ +........++..+.+++|||||++.+..++..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4579999999999999999999887766666666663 444556667888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
+|||++++.++..+ ..|+..+....++.|+++|+||+|+.+... ..+...+++..+. +++++||++
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~ 158 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS 158 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999998 789988888878999999999999976432 1244567777887 999999999
Q ss_pred CCCHHHHHHHHHHHHcCCch
Q 029215 163 QQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~~~~~~ 182 (197)
|.|++++|++|.+.+...+.
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999876643
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=208.19 Aligned_cols=174 Identities=64% Similarity=1.076 Sum_probs=145.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||+++|..+.+...+.++....+...+..++..+.+++|||||++.+...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56899999999999999999999998888888888877776667777778899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc--CCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||++++.++......|+..+....++.|+++|+||+|+.+...... .....+.+..+++..+++..+..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999885588888887767899999999999976432110 0111123566778888888886689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIKVV 177 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~ 177 (197)
+|.|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=3.9e-31 Score=187.87 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=118.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++.++.+. .+.+|.... ...+..++ +.+++|||||++.+..++..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999987763 345555433 34556676 788899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|||+++++++... ..|+..+... ..+.|+++|+||+|+... +..+++.++....
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence 9999999999988 6666555443 258999999999999652 4566666665532
Q ss_pred -----CCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 151 -----GSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 151 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
...+++++||++|.|++++|+++.+.+
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 223799999999999999999998643
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.8e-31 Score=186.16 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=122.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||++++..+.+. .+.+|.+. ....+..++ +.+++|||||++++..++..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 56799999999999999999999988775 44555442 233444555 788899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||+++++++... ..|+..+... ..+.|+++|+||+|+... ...+++.+... ..+. +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEE
Confidence 9999999999998 6666666544 258999999999999753 23344433332 2344 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
++||++|.|++++|++|++.+.......
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999987765443
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.3e-30 Score=183.12 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=124.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++.++. ...+.+|.... ...+..++ +.+++|||||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 567999999999999999999999887 55566665422 23444555 778899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||+++++++... ..|+..+... .++.|+++|+||+|+.+.. ..++..+... ..+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 5555544433 2589999999999997642 2233322221 2233 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++||++|.|++++|+++.+.+.++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988654
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=6.6e-32 Score=185.98 Aligned_cols=155 Identities=14% Similarity=0.179 Sum_probs=117.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEe
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS 86 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 86 (197)
+||+++|.+|||||||++++..+.+.. +.+|... ....+...+ +.+++|||||++.+..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887754 4455442 222333344 778899999999999888889999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-----HHHhCCCeEEEec
Q 029215 87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-----RKLIGSPAYIECS 159 (197)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~S 159 (197)
+++++++... ..|+..+... .++.|+++|+||+|+.+.. ..++.... ++..+. +++++|
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 142 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATC 142 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECB
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcc
Confidence 9999999988 5666555432 2589999999999996542 12222111 111233 789999
Q ss_pred cCCCCCHHHHHHHHHHHHcC
Q 029215 160 SKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 160 a~~~~~i~~~~~~i~~~~~~ 179 (197)
|++|.|++++|+++.+.+.+
T Consensus 143 a~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 143 ATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred cCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.3e-30 Score=184.06 Aligned_cols=156 Identities=15% Similarity=0.256 Sum_probs=122.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++..+.+. .+.+|.... ...+..++ +.+++|||||++.+..++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999998764 345555432 44566676 788899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-----------
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI----------- 150 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (197)
|||+++++++... ..|+..+... .++.|+++|+||+|+... +..+++.+.....
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence 9999999999998 5666555432 258999999999999752 4455555544321
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 151 GSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
...+++++||++|.|++++|+++.+.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 22379999999999999999999764
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=7.8e-31 Score=181.70 Aligned_cols=164 Identities=14% Similarity=0.192 Sum_probs=122.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|+|||||++++..+.+.. +.+|.... ...+..++ +.+++|||||++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999888743 44454322 23444554 678899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
|||+++++++... ..|+..+ .... ++.|+++|+||+|+.+... ...+........+...+. +++++||+
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT 151 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence 9999999999888 4554444 3322 5899999999999976421 000111111111223344 79999999
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q 029215 162 TQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~~ 180 (197)
+|.|++++|+++.+.+.++
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988653
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.9e-31 Score=184.51 Aligned_cols=159 Identities=16% Similarity=0.227 Sum_probs=124.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
.+.++|+++|.+|+|||||+++|.++. +...+.+|.. .....+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 457999999999999999999999877 4555556554 2333444555 67889999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH--H---hCCC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK--L---IGSP 153 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~ 153 (197)
+|||++++.++... ..|+..+.... .+.|+++|+||+|+... ...+++.+... . .+.
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~- 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW- 161 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence 99999999999988 55655554432 48999999999999653 34455555543 1 233
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++++||++|.|++++|++|.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999988743
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=9e-31 Score=184.49 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=123.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+.+|....+. .+...+ +.+++|||||++.+..++..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 45799999999999999999999999887777777654443 233444 778899999999999999889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||+++++++... ..|+..+... . .+.|+++|+||+|+.... ..++...... ..+. +++
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 162 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCY 162 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEE
Confidence 9999999999988 5555544432 2 589999999999997542 1222211111 1233 789
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++||++|.|++++|++|.+.+.++
T Consensus 163 ~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 163 SISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.3e-31 Score=189.51 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=116.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
..+.++|+++|++|||||||++++..+.+.. +.+|.. .....+...+ +.+++|||||++.+...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4567999999999999999999999877643 334433 2223344444 78889999999999999888999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH-----HHHhCCCeE
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL-----RKLIGSPAY 155 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 155 (197)
+|||+++++++... ..|+..+.... ++.|+++|+||+|+.+.. ..++..+. +...+. ++
T Consensus 102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~ 167 (192)
T 2b6h_A 102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YV 167 (192)
T ss_dssp EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EE
T ss_pred EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EE
Confidence 99999999999988 56665554332 589999999999996542 12222111 111233 78
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.3e-30 Score=182.61 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=119.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+|||||||+++|..+.+ ..+.+|.+.. ...+..++ +.+++|||||++.+..++..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999877 4444444422 23444565 788899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 156 (197)
|||+++++++... ..|+..+... ..+.|+++|+||+|+... ...++..+... ..+. +++
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ 160 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EEE
Confidence 9999999999988 5555554433 258999999999999653 22333333321 2233 789
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++||++|.|++++|++|.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=5.6e-31 Score=185.58 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=121.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
++.++|+++|.+|+|||||++++..+.+.. +.+|.. .....+..++ +.+++|||||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 568999999999999999999998877643 344443 2223444554 678899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-----HHHHhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-----LRKLIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 156 (197)
|+|+++++++... ..|+..+... . ++.|+++|+||+|+.+.. ..++... .+...+. +++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999988 5555444332 2 589999999999997642 1122221 1122334 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++||++|.|++++|+++.+.+.++
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999987543
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=9.9e-31 Score=183.27 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=119.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
...++|+++|++|||||||++++.++.+ ..+.+|.+. ....+..++ +.+++|||||++.+...+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5679999999999999999999998754 223344332 223444554 778899999999999888889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHH-----HHhCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR-----KLIGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 156 (197)
|||+++++++... ..|+..+... . .+.|+++|+||+|+.+... .++..+.. ...+. +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCC------------HHHHHHHhCchhccCCce-EEE
Confidence 9999999999988 5565544332 2 5899999999999976421 22222211 11233 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++||++|.|++++|+++.+.+.++
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC---
T ss_pred EccCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887543
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=7e-31 Score=186.24 Aligned_cols=168 Identities=14% Similarity=0.181 Sum_probs=121.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEE-CCeEEEEEEEEcCCcccccccc---cCCCCC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRG 77 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~~ 77 (197)
.++.+||+++|.+|||||||++++.+. +........ .........+ ++..+.+++|||||++.|.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 346799999999999999999987764 322211111 1111222233 3556789999999999987765 788999
Q ss_pred CcEEEEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH----HhC
Q 029215 78 ADVFILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK----LIG 151 (197)
Q Consensus 78 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 151 (197)
+|++++|||++++ +++... ..|+..+....++.|+++|+||+|+.+..... ...+.+..+++..+++ ..+
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTSC
T ss_pred CCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999997 666666 66777665556799999999999986532100 0011255566777887 566
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
. +++++||++ .|++++|+.+++.+
T Consensus 172 ~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 L-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp E-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred c-ceEEEEech-hhHHHHHHHHHHHh
Confidence 6 899999999 99999999999875
No 97
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.4e-29 Score=179.90 Aligned_cols=164 Identities=33% Similarity=0.577 Sum_probs=137.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
...++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+++||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999888776667664 334556778898899999999999999888888889999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (197)
+|+|+++..++... ..|+..+.... .+.|+++++||+|+.+... +..++++.++...+. .++++||+
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999887 67777666544 4789999999999976443 566788899998887 89999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 029215 162 TQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~~~~ 179 (197)
++.|++++|+++.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2.5e-31 Score=186.73 Aligned_cols=166 Identities=23% Similarity=0.347 Sum_probs=120.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC--CCCCCCCCceeece-eEEEEE---CCeEEEEEEEEcCCcccccccccCCCCCCc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD 79 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~ 79 (197)
.+||+++|++|||||||+++|.+. .+...+.+|.+..+ ...+.. ++..+.+++|||+|++.+..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 45555566653332 222222 234678899999999999988888889999
Q ss_pred EEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc---HHHHHHHHHHhCCC--
Q 029215 80 VFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT---TAQGEELRKLIGSP-- 153 (197)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 153 (197)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+.+... +. .+.+..+++.++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence 99999999997 578877 788888877667899999999999965432 21 33455666666763
Q ss_pred -eEEEeccCCCC-CHHHHHHHHHHHHcCCch
Q 029215 154 -AYIECSSKTQQ-NVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 154 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~ 182 (197)
+++++||+++. +++++++.+.+.+...+.
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 28999999996 999999999998876543
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-30 Score=181.32 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=118.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|++|||||||++++..+.+ ..+.+|.... ...+..++ +.+.+|||||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998766 3344444322 23444555 778899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-----hCCCeEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-----IGSPAYI 156 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 156 (197)
|+|+++++++... ..|+..+... ..+.|+++|+||+|+.+. ...++..+.... .+. +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~ 157 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIV 157 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEE
Confidence 9999999999988 5666655544 268999999999999654 223333332221 122 789
Q ss_pred EeccCCCCCHHHHHHHHHHHHc
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++||++|.|++++|+++.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.1e-28 Score=172.81 Aligned_cols=161 Identities=34% Similarity=0.580 Sum_probs=138.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeec-eeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
..++++++|++|||||||++++.+..+...+.++.... ....+.+++..+.+++||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 46899999999999999999999988877777776443 35677788988899999999999998888888889999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCC
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKT 162 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (197)
|+|+++..+++.+ ..|+..+.... .+.|+++++||+|+.+... ...++++.++...+. .++++||++
T Consensus 108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald 175 (191)
T 1oix_A 108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD 175 (191)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999998887 66777665543 4789999999999976443 567788999999887 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029215 163 QQNVKAVFDAAIKVV 177 (197)
Q Consensus 163 ~~~i~~~~~~i~~~~ 177 (197)
+.|++++|+++.+.+
T Consensus 176 ~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 176 STNVEAAFQTILTEI 190 (191)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.1e-29 Score=182.28 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=116.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCe-EEEEEEEEcCCcccccc-cccCCCCCCcE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 80 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~~~ 80 (197)
+.+.++|+++|.+|||||||+++|..+.+...+.++...... +.+++. .+.+++|||||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 456799999999999999999999999887777655433332 445533 47889999999999887 77888999999
Q ss_pred EEEEEeCCCHh-HHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccCCcccccC------------------------C
Q 029215 81 FILAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQFFID------------------------H 132 (197)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~------------------------~ 132 (197)
+++|||+++.. ++......|...+... .++.|+++|+||+|+......... .
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999864 4666645666555442 247999999999999765320000 0
Q ss_pred CCCccccHHHHHHHHHHhC--CCeEEEeccCCC------CCHHHHHHHHHHHH
Q 029215 133 PGAVPITTAQGEELRKLIG--SPAYIECSSKTQ------QNVKAVFDAAIKVV 177 (197)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~~ 177 (197)
...+.+..++++.++.... ..+|++|||++| .||+++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000000001111111110 347999999999 99999999998753
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=6.2e-29 Score=173.23 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=117.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
..+.++|+++|.+|+|||||+++|..+.+...+.++.. +.....+..++. .+.+|||||++.+..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34679999999999999999999999887665555442 333345666774 567999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--------CC
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--------SP 153 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 153 (197)
++|+|++++...... .++..+... +.|+++|+||+|+.... .++........+ ..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~~--~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKAA--NVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGGG--SCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred EEEEECCCCCcHHHH--HHHHHHHhC--CCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence 999999884332222 222333333 89999999999996531 122222222221 13
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+++++||++|.|++++|++|++.+...+
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 7999999999999999999999876543
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=9.1e-29 Score=179.30 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=117.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----------cccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~ 72 (197)
...++|+|+|.+|||||||+++|.++.+. .....++.......+...+ +.+.+|||||+.. +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 45799999999999999999999987763 2222223223333334454 6788999999832 111 12
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccH---HHHHHHHH
Q 029215 73 LSYRGADVFILAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT---AQGEELRK 148 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 148 (197)
.++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+.+... +.. ..+..++.
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILD 173 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHH
Confidence 335778999999999998776421 1456666666556899999999999976543 333 35566777
Q ss_pred HhC--CCeEEEeccCCCCCHHHHHHHHHHHHcCCchhh
Q 029215 149 LIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQK 184 (197)
Q Consensus 149 ~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~ 184 (197)
..+ . +++++||++|.|++++|++|.+.+.+.+...
T Consensus 174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~ 210 (228)
T 2qu8_A 174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES 210 (228)
T ss_dssp HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence 665 5 8999999999999999999999987655433
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.4e-28 Score=169.76 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=112.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc-eeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC--
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-- 76 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~-- 76 (197)
.++|+++|++|+|||||+++|.+..+.....++ +.......+..++ ..+++|||||++.+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999987653333333 2333444555666 5788999999987753 2234443
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
++|++++|+|+++.+.. ..|+..+... +.|+++|+||+|+..... +.. ++.++++.++. +++
T Consensus 81 ~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~~ 142 (165)
T 2wji_A 81 KPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KVV 142 (165)
T ss_dssp CCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CEE
T ss_pred CCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CEE
Confidence 79999999999986543 3455555554 799999999999865332 222 35678888887 999
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029215 157 ECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
++||++|.|++++|+++.+.+
T Consensus 143 ~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 143 PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999998875
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=184.12 Aligned_cols=161 Identities=18% Similarity=0.296 Sum_probs=121.9
Q ss_pred cceeEEEEECCC---------CCcHHHHHHHHhh---CCCCCCCCCce-eece-eE--------------EEEECCeEEE
Q 029215 4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDNF-SA--------------NVVVDGSTVN 55 (197)
Q Consensus 4 ~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~t~-~~~~-~~--------------~~~~~~~~~~ 55 (197)
...+||+|+|.+ |||||||+++|.. +.+...+.+++ ...+ .. ...+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 457999999999 9999999999998 56666666664 2111 11 1124566788
Q ss_pred EEEEE-----------------------cCCcccccccccCCCC---------------------CCcEEEEEEeCCCH-
Q 029215 56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK- 90 (197)
Q Consensus 56 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 90 (197)
+++|| ++|+++|..++..++. ++|++++|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888887 79999999999998
Q ss_pred -hHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-CCCeEEEeccCCCCCH
Q 029215 91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-GSPAYIECSSKTQQNV 166 (197)
Q Consensus 91 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 166 (197)
+++..+ ..|+..+... .++.|+++|+||+|+..... + +++++++... +. +++++||++|.|+
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~gv 242 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVNV 242 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence 999988 7887777654 25899999999999965432 2 5677777764 55 8999999999999
Q ss_pred HHHHHHHHHHHc
Q 029215 167 KAVFDAAIKVVL 178 (197)
Q Consensus 167 ~~~~~~i~~~~~ 178 (197)
+++|++|++.+.
T Consensus 243 ~elf~~l~~~l~ 254 (255)
T 3c5h_A 243 DLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.4e-28 Score=185.50 Aligned_cols=169 Identities=20% Similarity=0.263 Sum_probs=127.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-----cccccCCCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~ 76 (197)
..+||+++|.+|||||||+++++++. +.. .+.+|....+. .+.+.+ .+.+++|||||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 46899999999999999999998873 222 23344433332 344433 478999999999988 677788889
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC-
Q 029215 77 GADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS- 152 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (197)
++|++++|||+++++++..+ ..| +..+....++.|+++|+||+|+.+.... .....+..+++.++++.+|.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887 555 4444545678999999999999762210 00001345788889999883
Q ss_pred -CeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 153 -PAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+++++||++ .++.++|..+++.+....
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 5999999999 899999999998876654
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.5e-29 Score=188.04 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=116.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+|+|.+|+|||||+++|..+.+...+ +|.... ...+...+ +.++||||||++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35689999999999999999999988764432 333222 12333444 778899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (197)
|||++++.++......|...+.... +++|+++|+||+|+.+.. ..++...... ..+. ++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~ 305 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQA 305 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCE-EEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCC-EEEE
Confidence 9999999999988555555555443 689999999999997642 1222222111 1222 6899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCC
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+||++|.|++++|++|.+.+.++
T Consensus 306 vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EECCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999988754
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.6e-29 Score=188.40 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=119.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc---cccCCCCCCcEE
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 81 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~~~~ 81 (197)
||+++|..|||||||++++..+.+.. .+.+|.+..+.. ++ ..+.+++|||+||++|.. .++.++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887654322 244555444332 22 347899999999999964 357889999999
Q ss_pred EEEEeCCCH--hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH----hCCCeE
Q 029215 82 ILAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL----IGSPAY 155 (197)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (197)
++|||++++ +++... ..|+..+....+++|++++|||+|+..+..+. ...+.+..++++++++. +++ +|
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f 151 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF 151 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence 999999998 333333 34455555556799999999999997642100 00122566677777775 455 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++|||++ .+|.++|..+++.+.+..
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 9999998 589999999999887654
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1.2e-27 Score=164.02 Aligned_cols=150 Identities=23% Similarity=0.192 Sum_probs=106.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc-------cccccCCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG 77 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ 77 (197)
.||+++|++|+|||||++++.+..+. ....+++.......+..++. .+.+|||||++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987642 33344444445555666664 6779999999873 3334556789
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEE
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIE 157 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
+|++++|+|++++.+... ..+...+... +.|+++|+||+|+.+.. +++.+++ ..+..++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--------------~~~~~~~-~~~~~~~~~ 140 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE--------------LYLGPLY-GLGFGDPIP 140 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG--------------GGCGGGG-GGSSCSCEE
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch--------------HhHHHHH-hCCCCCeEE
Confidence 999999999998644332 2333344443 89999999999997542 1223344 456557999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 029215 158 CSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~ 177 (197)
+||++|.|++++|+++.+.+
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHC
T ss_pred EecccCCChHHHHHHHHHhC
Confidence 99999999999999998865
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=6e-27 Score=187.44 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=120.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 83 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (197)
.+.++|+++|.+++|||||+++|..+.+.. +.+|....+. .+...+ +.+++|||||++.+..++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 357999999999999999999999988644 3444433322 233344 678899999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH-----HhCCCeEEE
Q 029215 84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK-----LIGSPAYIE 157 (197)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (197)
|||+++++++......+...+.... .++|+++|+||+|+.... ..++...... ..+. ++++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~ 462 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNW-YVQP 462 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCE-EEEE
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCe-EEEE
Confidence 9999999999998444444444332 589999999999997542 2222222111 1122 6899
Q ss_pred eccCCCCCHHHHHHHHHHHHcCCchh
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQPPKQ 183 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~~~~~ 183 (197)
+||++|.|++++|++|.+.+.+..++
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC-----
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988665543
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=5.4e-28 Score=170.95 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=106.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-EEEEECCeEEEEEEEEcCC----------ccccccc
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL 70 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G----------~~~~~~~ 70 (197)
.....++|+|+|.+|+|||||+++|.++.+...+.++...... .....++ .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 3456799999999999999999999988755544444432222 2233333 477999999 6666666
Q ss_pred ccCCCCCC---cEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc--HHHHHH
Q 029215 71 RPLSYRGA---DVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT--TAQGEE 145 (197)
Q Consensus 71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~ 145 (197)
+..+++.+ |++++|+|++++.++.+. .+...+... +.|+++|+||+|+.+... +. .+++.+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~ 161 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGK----------WDKHAKVVRQ 161 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence 66666555 999999999998776654 233344443 899999999999976532 21 122222
Q ss_pred -HHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 146 -LRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 146 -~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++...+ .+++++||++|.|++++|+++.+.+.
T Consensus 162 ~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 221223 48999999999999999999998764
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.3e-26 Score=174.86 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=128.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEEC-CeEEEEEEEEcCCccccc----------
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN---------- 68 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~---------- 68 (197)
+....-.|+++|.+|+|||||+|+|++..+. .....++........... + +.+.||||||+..+.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence 3456788999999999999999999988764 334444444444455555 5 677899999986544
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..+..++..+|++++|+|++++.++.+. ..|+..+... +.|+++|+||+|+..... ...+....+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~ 150 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence 3445567889999999999998888876 6667787775 899999999999973332 45667777888
Q ss_pred HhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 149 LIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.++ ..+++++||++|.|++++|+++.+.+...
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 874 45899999999999999999999988654
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=9e-28 Score=193.60 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=122.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEE---------EECCeEEEEEEEEcCCcccccccccC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV---------VVDGSTVNLGLWDTAGQEDYNRLRPL 73 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~i~D~~G~~~~~~~~~~ 73 (197)
..+.+||+++|.+|||||||++++.+..+...+.+|.+..+.... ..++..+.+++||+||++.+..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999998887777777754443221 11233578899999999999999888
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+++.+|++++|+|+++.+ .. ..|+..+..+.++.|+++|+||+|+.+... +..++++.++...+.
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~- 182 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN- 182 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-
T ss_pred HccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-
Confidence 899999999999998764 33 678888888777899999999999976544 667788888888887
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
+++++||++|.|++++++++.+.+....
T Consensus 183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 183 RFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 8999999999999999999999987754
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2e-27 Score=167.05 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=117.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCC-CCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR 76 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~ 76 (197)
.+.++|+++|++|||||||+++|.+..+... +++++.......+..++ ..+++|||||++.+.. ++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 4679999999999999999999998654322 22223333444555666 6788999999988752 3344443
Q ss_pred --CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 77 --GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 77 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
.++++++|+|.++. ... ..|...+... +.|+++|+||+|+..... +. .++.++++.++. +
T Consensus 83 ~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~ 144 (188)
T 2wjg_A 83 NEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-K 144 (188)
T ss_dssp HHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-C
T ss_pred ccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-C
Confidence 58999999999864 333 4566666554 899999999999965432 22 346778888887 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++++||+++.|++++|+++.+.+....
T Consensus 145 ~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 145 VVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987665
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2.1e-27 Score=167.71 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=111.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC----------ccccccccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP 72 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~ 72 (197)
....++|+++|.+|+|||||+++|++..+. ...++............+ ..+.+||||| ++.+..++.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 345789999999999999999999988642 233333222222222112 2466999999 555555555
Q ss_pred CCCC---CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH
Q 029215 73 LSYR---GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL 149 (197)
Q Consensus 73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+++ .++++++|+|+++..+.... .+...+... +.|+++|+||+|+.+... .....+++++++..
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence 5554 45999999999876443332 223333333 799999999999975422 12344566677776
Q ss_pred hCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 150 IGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
.+..+++++||++|.|++++|+++.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 665599999999999999999999998754
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=6.4e-27 Score=172.29 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=118.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc------cCCC-
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY- 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~- 75 (197)
.+.++|+++|.+|||||||+++|++..+. ..+++++.......+...+ ..+.+|||||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 46799999999999999999999986652 3334444444444455555 678899999998876533 3444
Q ss_pred -CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 76 -RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+..... +.. ++..+++.+++ +
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~~-~~~~l~~~lg~-~ 142 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MKI-DRYELQKHLGI-P 142 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CCB-CHHHHHHHHCS-C
T ss_pred hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hHH-HHHHHHHHcCC-C
Confidence 5899999999999876533 344455554 899999999999965432 222 36778888897 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++++||++|.|++++|+++.+.+.
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=8e-28 Score=167.16 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=112.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (197)
..++|+++|.+|+|||||+++|.+..+ ...+.+++.+.....+.+++. .+.+|||||++.+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998753 344555555556667777774 46799999987543211 124
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
++.+|++++|||++++.++.. ..|+..+.... .++|+++|+||+|+.+... .++...+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------------~~~~~~~~- 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------------GMSEVNGH- 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------------EEEEETTE-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------------hhhhccCC-
Confidence 678999999999999888764 35666665554 4799999999999964321 00111344
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+++++||++|.|++++|+++.+.+...
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 899999999999999999999887543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=8e-28 Score=169.28 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=112.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCC-----------cccccccccCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~~~ 75 (197)
++|+++|.+|||||||++++.++.+...+.++... ....+... .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998876655554321 12222333 577999999 555666666666
Q ss_pred CC-CcEEEEEEeCCCHhHHHHHHHHHHHH---------HhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 76 RG-ADVFILAFSLISKASYENVAKKWIPE---------LRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.. ++++++++++.|..++......|... +.... .+.|+++|+||+|+.... .+++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~ 143 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN 143 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence 65 66666666666667776654555431 11111 489999999999996531 45677
Q ss_pred HHHHHhCCC------eEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 145 ELRKLIGSP------AYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 145 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
.+++.++.. +++++||++|.|++++|+++.+.+.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 888888862 37999999999999999999998865543
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=6.1e-27 Score=173.40 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=113.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCCC-
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR- 76 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~- 76 (197)
..++|+++|.+|||||||+++|++.. +..++++++....... +.. ...+++|||||++.+.. +++.++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 45899999999999999999999865 4455544443322222 333 45788999999987763 3344443
Q ss_pred -CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 77 -GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.+|++++|+|+++.++.. .|...+.+. +.|+++|+||+|+..... +. .++..+++.+++ ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence 699999999999876543 344444444 899999999999865432 22 345678888887 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHc
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
+++||++|.|++++|+++.+.+.
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEEccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=1.6e-25 Score=168.13 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=113.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc--------ccccccCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~ 74 (197)
+..+|+++|.+|+|||||+|+|++..+. ...+.|+.......+...+ ..++||||||+.. +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4678999999999999999999988763 2333444444443444444 6788999999876 33344567
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH-hCCC
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL-IGSP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (197)
++.+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+..... . .....+. .+..
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~~~~~~~ 147 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYHELLPEA 147 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHHHTSTTS
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHHHhcCcC
Confidence 889999999999998754443 334456665556899999999999965321 0 2222333 3445
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++++||++|.|++++++++.+.+..
T Consensus 148 ~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 148 EPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 78999999999999999999987643
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=4.5e-26 Score=167.53 Aligned_cols=150 Identities=14% Similarity=0.229 Sum_probs=113.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc----------cccCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~~ 75 (197)
.+|+++|.+|||||||+++|++... ...+++++.+.....+..++. .+.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998754 233444445555666667774 677999999987764 334455
Q ss_pred --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCC
Q 029215 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSP 153 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (197)
+.+|++++|+|+++.++...+ ...+... +.|+++|+||+|+..... .. .....+++.+++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~- 141 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC- 141 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence 789999999999987654433 3334444 899999999999875432 11 124557778887
Q ss_pred eEEEeccCCCCCHHHHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
+++++||++|.|++++|+++.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999999887
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=5.1e-26 Score=164.11 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=108.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCC---CCCCCCceeeceeEEEEEC-CeEEEEEEEEcCCcc----------ccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQE----------DYN 68 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~----------~~~ 68 (197)
....++|+|+|.+|+|||||+++|++... .....+++... ...... .....+.+|||||.. .+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34578999999999999999999998762 23333332221 122232 223567899999953 223
Q ss_pred ccccCCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH
Q 029215 69 RLRPLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE 145 (197)
Q Consensus 69 ~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (197)
.+...++ ..+|++++|+|+++..+... ..++..+... +.|+++|+||+|+...... ....+...+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~ 171 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK 171 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence 3333343 34889999999987644332 3556666665 8999999999999754320 001222223
Q ss_pred HHHHh------CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 146 LRKLI------GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 146 ~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..... ...+++++||++|.|++++|++|.+.+....
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 33332 3448999999999999999999999987654
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=2.1e-26 Score=171.01 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=114.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc----------cC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~ 73 (197)
+.++|+++|.+|+|||||+|+|++..+. ..+++++.+.....+...+ ..+.+|||||+..+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999987642 2333444444455555556 356699999998876322 11
Q ss_pred C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 74 S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
+ .+.+|++++|+|+++.++... |...+.+. +.|+++|+||+|+.+... . ......+++.++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg 142 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG 142 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence 2 268999999999998765443 33344444 899999999999865432 1 123466778888
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+ +++++||++|.|++++|+++.+.+...
T Consensus 143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 7 999999999999999999999877654
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=6.3e-25 Score=173.76 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=99.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (197)
..++|+++|.+|+|||||+|+|.+.. +...+.+++.+.....+.+++ +.+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35899999999999999999999874 345566666666677777887 567899999987765433 346
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++++|++++|+|++++.++... ..+...+... .+.|+++|+||+|+..... . ....+.+... .+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence 7899999999999998776432 2222222222 2799999999999976532 2 1233444322 48
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++++||++|.|+++++++|.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999886
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.5e-25 Score=165.18 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=114.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccc------cccCCC--
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY-- 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~-- 75 (197)
+.++|+++|++|+|||||+++|++..+.. ...+++.......+...+. .+.+|||||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999876522 2333334444455666664 577999999987765 344444
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
.++|++++|+|+++.+. . ..|...+... ...|+++|+||+|+.+... ... ....+++.++. ++
T Consensus 80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence 67999999999998643 2 2333333333 1399999999999865432 122 26678888887 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+++||++|.|++++|+++.+.+...
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.8e-25 Score=176.09 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=113.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc----------ccccccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP 72 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~ 72 (197)
..++|+++|.+|||||||+++|++..+ ...+.+++.+.....+..++. .+++|||||+. .|..+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 569999999999999999999998765 455566666666667777775 47799999983 3332222
Q ss_pred -CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHHh
Q 029215 73 -LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKLI 150 (197)
Q Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (197)
.+++.+|++++|+|++++.++++. .|...+... +.|+++|+||+|+.+... ...++.. .+.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence 356789999999999998888775 566666654 899999999999976432 2333332 222222
Q ss_pred ---CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 151 ---GSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 151 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+..+++++||++|.|++++|+.+.+.+..
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 33489999999999999999999887753
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2.5e-25 Score=176.19 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=118.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCC----------cccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR 71 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~ 71 (197)
...++|+++|.+++|||||+++|.+.. ....+.+++.+.....+..++. .+++||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999764 3455666666666677777775 677999999 55555544
Q ss_pred c-CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215 72 P-LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 150 (197)
Q Consensus 72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
. .+++.+|++++|+|+++..+..+ ..|...+... +.|+++|+||+|+.+... ...+++.+.++..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence 3 35678999999999998644333 3566666554 899999999999986543 4556666665554
Q ss_pred ----CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 151 ----GSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+..+++++||++|.|++++|+++.+.+..
T Consensus 337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 33599999999999999999999987743
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1e-25 Score=162.01 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=100.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC---
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~--- 77 (197)
.+.++|+++|++|+|||||+++|....+.. .+.++....+ ..+.+++|||||++.+...+..++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467999999999999999999999887643 2333332222 33567899999999998877777766
Q ss_pred -CcEEEEEEeCC-CHhHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh
Q 029215 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI 150 (197)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
+|++++|+|++ +++++... ..|+..+... .++.|+++|+||+|+....... .......+++..++...
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERR 156 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHH
Confidence 89999999999 88888877 4554444332 2589999999999997654300 00001145566777777
Q ss_pred CCCeEEEeccCCCCC
Q 029215 151 GSPAYIECSSKTQQN 165 (197)
Q Consensus 151 ~~~~~~~~Sa~~~~~ 165 (197)
+. +++++||++|.+
T Consensus 157 ~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KK-SLNEVERKINEE 170 (218)
T ss_dssp HH-HHHC--------
T ss_pred hc-cccccccccccc
Confidence 76 788999998754
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=4e-24 Score=168.55 Aligned_cols=153 Identities=22% Similarity=0.203 Sum_probs=105.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc---------cccccCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY 75 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~~ 75 (197)
.+|+++|.+|||||||+|+|++... ..+.++++.+.....+.+.+. .+++|||||++.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3799999999999999999998763 455666666677777778885 4679999998753 22345568
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHH-HHHHHHhCCCe
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG-EELRKLIGSPA 154 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (197)
+++|++++|+|++++.+..+. .+...+... ++|+++|+||+|+... . ..++ .++. ..+..+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~ 141 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE 141 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence 899999999999886554332 223333444 7999999999997431 0 1222 3343 456547
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++++||++|.|++++++++.+.+..
T Consensus 142 ~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 142 PIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHHhccc
Confidence 8999999999999999999998863
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=3e-25 Score=172.99 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=115.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc-------CC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS 74 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~ 74 (197)
...++|+|+|..++|||||+++|+...+ .....+++.+.....+...+. ..+++|||||++.+..+.. .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 4579999999999999999999998765 234444554555555666553 2678999999998876533 36
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++++|+|++..+. ...|+..+... +.|+++|+||+|+..... .+...++++.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence 788999999999933322 25666667666 899999999999977543 2556666667776 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
++++||++|.|++++|++|.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999998554
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.5e-23 Score=160.01 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=116.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc---------ccC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL 73 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~---------~~~ 73 (197)
...++++++|.+|+|||||+++|.+.... .....++.......+...+ ..+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999999987642 1222333222223333444 56789999998653211 112
Q ss_pred CCCCCcEEEEEEeCCCHh--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC
Q 029215 74 SYRGADVFILAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG 151 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (197)
....+|++++|+|+++.. ++... ..|+..+.....+.|+++|+||+|+..... .+++.+++...+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence 334689999999998876 56666 677777766555899999999999965422 245566666677
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 152 SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
. +++++||++|.|++++++++.+.+...
T Consensus 310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 310 L-NPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 6 899999999999999999999988543
No 132
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=2e-23 Score=156.88 Aligned_cols=159 Identities=18% Similarity=0.101 Sum_probs=113.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcc---------ccccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP 72 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~ 72 (197)
.+..+|+++|++|+|||||+++|.+..+. .....++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 34568999999999999999999987652 2233343333333444455 567799999987 3444556
Q ss_pred CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 73 LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
.+++.+|++++|+|+++ -+ .....+...+... +.|+++++||+|+..... ...+....+.+.++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF 148 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence 78899999999999977 22 2212333444433 799999999999975221 234555666666676
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
..++++||+++.|++++++.+.+.+..
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 579999999999999999999987653
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=2.5e-24 Score=170.50 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=115.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc-ccccc--------ccCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS 74 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~ 74 (197)
.++|+++|.+|+|||||+|+|.+.. +..++.+|+.+.....+.+++ ..+.+|||||+. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999864 456677777777777777887 567899999987 65432 1235
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
++.+|++++|+|++++.++++. .+++.+ .+.|+++|+||+|+.+. +..+++.++.. .+. +
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence 6789999999999998777654 333333 37899999999999643 23344444332 233 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
++++||++|.|+++++++|.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999765
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=8.2e-24 Score=161.56 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=96.3
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD 121 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 121 (197)
+.+++|||+|++.++..|..++++++++|||||+++ ..++.+. ..|+..+... .+++|+++++||+|
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence 788999999999999999999999999999999999 4678887 5555555443 26899999999999
Q ss_pred ccCCcccc-----cCCCCCccccHHHHHHHHHH-----------hCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 122 LRDDKQFF-----IDHPGAVPITTAQGEELRKL-----------IGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+....... .-..-...++.+++..++.. .++ .+++|||+++.||+++|+++.+.+.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 96432100 00011123567888888873 333 788999999999999999999988643
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=6.1e-23 Score=160.14 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=114.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-------eEEEE---------E---CCeEEEEEEEEcC
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------SANVV---------V---DGSTVNLGLWDTA 62 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-------~~~~~---------~---~~~~~~l~i~D~~ 62 (197)
.....++|+++|.+++|||||+++|++............... ...+. . ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 345689999999999999999999987533221000000000 00000 0 1123678899999
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
|++.|...+...+..+|++++|+|++++.++... ..++..+.... ..|+++|+||+|+.+... .....++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~--------~~~~~~~ 153 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEE--------ALSQYRQ 153 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHH--------HHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHH--------HHHHHHH
Confidence 9999998888889999999999999987655554 45555555441 358999999999975431 0011122
Q ss_pred HHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 143 GEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 143 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
..++....+ ..+++++||++|.|+++++++|.+.+..+.
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 333332221 338999999999999999999999876543
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=1.7e-22 Score=157.90 Aligned_cols=166 Identities=19% Similarity=0.155 Sum_probs=105.2
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCC---CCCCCCC--ceeecee-EEEEE-------------C--C----eEEE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFS-ANVVV-------------D--G----STVN 55 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~ 55 (197)
|+....++|+++|+.++|||||+++|.+.. +.....+ |....+. ..+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 355678999999999999999999998432 2222222 2221111 11111 1 1 1368
Q ss_pred EEEEEcCCcccccccccCCCCCCcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 131 (197)
+.||||||++.|...+...+..+|++++|+|++++ ++.+.+ . .+... ...|+++++||+|+.+...
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~l-~~~~iivv~NK~Dl~~~~~---- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEIL-GIDKIIIVQNKIDLVDEKQ---- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHHc-CCCeEEEEEEccCCCCHHH----
Confidence 89999999999988877788899999999999964 343333 2 22222 1358999999999976431
Q ss_pred CCCCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 132 HPGAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.....++++++.+.. ...+++++||++|.|+++++++|.+.+..+
T Consensus 153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 112345666666543 234899999999999999999999887654
No 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=2.2e-23 Score=164.37 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=106.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc--------cCC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS 74 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 74 (197)
..++|+++|++|+|||||+|+|.+.. +.....+++.+.....+.+++ ..+.+|||||+..+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35899999999999999999998753 345556666666666677787 556799999986654332 335
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCe
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPA 154 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (197)
+..+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+...... . ...++. ...+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~----------~--~~~~~~---~~~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI----------T--SLEYPE---NITQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS----------T--TCCCCT---TCCC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh----------H--HHHHhc---cCCc
Confidence 788999999999998766554 35555554 4799999999999765431 1 000111 2348
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 155 YIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++++||++|.|+++++++|.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999886543
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=2.4e-23 Score=158.47 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=117.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccc----ccccccCCC---CCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGA 78 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~~---~~~ 78 (197)
.+|+++|.+++|||||+++|+.... ...+..++.......+.+++. ..+.+|||||+.+ +..+...++ +.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3689999999999999999987653 233444443333334444431 4678999999643 333434443 459
Q ss_pred cEEEEEEeCCC---HhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 79 DVFILAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 79 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+++++|+|+++ +.++.+. ..|...+..+. .+.|+++|+||+|+... .+...++++.+..
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l~~ 302 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKLTD 302 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHCCS
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHhhc
Confidence 99999999998 7788887 78888887764 48999999999998542 1345666666652
Q ss_pred -CeEEEeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 153 -PAYIECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
.+++++||+++.|+++++++|.+.+...+.
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 378999999999999999999999876554
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=2e-22 Score=162.85 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=117.6
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC---------C-----CC-ceee-ceeEEEEE-CCeEEEEEEEEc
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------Y-----VP-TVFD-NFSANVVV-DGSTVNLGLWDT 61 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---------~-----~~-t~~~-~~~~~~~~-~~~~~~l~i~D~ 61 (197)
|..++..+|+++|+.++|||||+++|+.. .+... . .+ |... .....+.. ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 45567889999999999999999999752 22111 0 00 1100 01111111 455689999999
Q ss_pred CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHH
Q 029215 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTA 141 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (197)
||+.+|...+...+..+|++++|+|++++.+.+.. ..|..... . ++|+++++||+|+.... ...
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~-~--~ipiIvviNKiDl~~a~------------~~~ 144 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE-Q--DLVIIPVINKIDLPSAD------------VDR 144 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-C--CCCEEEEEeccCccccC------------HHH
Confidence 99999988888889999999999999998777766 55544433 3 79999999999997542 223
Q ss_pred HHHHHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 142 QGEELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
...++...++.. +++++||++|.|++++|+++.+.+..+.
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 345566666652 4899999999999999999999987654
No 140
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=1.9e-23 Score=159.51 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=93.2
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK 119 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK 119 (197)
..+.+++|||+|++.++.+|..++++++++|+|||++ +..++.+. ..|+..+... .+++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 77889988 5565555443 268999999999
Q ss_pred CCccCCcccc---------cCC--CCCccccHHHHHHHHHHh--------------C-CCeEEEeccCCCCCHHHHHHHH
Q 029215 120 LDLRDDKQFF---------IDH--PGAVPITTAQGEELRKLI--------------G-SPAYIECSSKTQQNVKAVFDAA 173 (197)
Q Consensus 120 ~D~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~Sa~~~~~i~~~~~~i 173 (197)
+|+..++... ++. ......+.+++..++... + ...+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 9996532210 000 001223456777775431 1 2246899999999999999999
Q ss_pred HHHHcC
Q 029215 174 IKVVLQ 179 (197)
Q Consensus 174 ~~~~~~ 179 (197)
.+.+.+
T Consensus 340 ~~~I~~ 345 (354)
T 2xtz_A 340 DETLRR 345 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=1.7e-22 Score=149.07 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=106.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCCCc--eeeceeEEEEECCeEEEEEEEEcCCccccccccc---------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP--------- 72 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~--------- 72 (197)
..++|+|+|.+|+|||||+++|++.. +.....++ +...........+ ..+.||||||+..+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999876 44443333 3333444555666 4677999999876543222
Q ss_pred --CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEee-cCCccCCcccccCCCCCccccH-------HH
Q 029215 73 --LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT-KLDLRDDKQFFIDHPGAVPITT-------AQ 142 (197)
Q Consensus 73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~-------~~ 142 (197)
.+++.+|++++|+|+++..........++..+.......|+++++| |+|+.... +.. ++
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~~ 167 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNKA 167 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCHH
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchHH
Confidence 2568899999999998632222111222222211111457777776 99997432 111 34
Q ss_pred HHHHHHHhCCCe--E--EEeccCCCCCHHHHHHHHHHHHcC
Q 029215 143 GEELRKLIGSPA--Y--IECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 143 ~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++.+....+..- + +++||+++.|++++|++|.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 555666665311 2 789999999999999999998754
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=9.3e-23 Score=153.70 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=96.9
Q ss_pred EEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhhC-CCCCEEE
Q 029215 47 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIIL 115 (197)
Q Consensus 47 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ii 115 (197)
+...+ +.+++|||+|++.++..|..++++++++|||||++ +..++.+....|...+.... .++|+++
T Consensus 162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL 239 (327)
T 3ohm_A 162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 239 (327)
T ss_dssp EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEE
Confidence 33444 78899999999999999999999999999999665 66778877343333333332 6899999
Q ss_pred EeecCCccCCcccc-----c-CCCCCccccHHHHHHHHH----------HhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 116 VGTKLDLRDDKQFF-----I-DHPGAVPITTAQGEELRK----------LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 116 v~nK~D~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++||+|+...+... . ..-.....+.+++.++.. ..++ .+++|||+++.||+.+|+.+.+.+.+
T Consensus 240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 99999997543110 0 111112357788887743 2333 67789999999999999999999876
Q ss_pred Cc
Q 029215 180 PP 181 (197)
Q Consensus 180 ~~ 181 (197)
..
T Consensus 319 ~~ 320 (327)
T 3ohm_A 319 LN 320 (327)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=3e-22 Score=157.88 Aligned_cols=159 Identities=20% Similarity=0.199 Sum_probs=107.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-----------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------- 71 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 71 (197)
..++++++|++|||||||++++.+... ..+..+++.+.....+.+++. .+.+|||+|+.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 468999999999999999999998754 455566666666667778885 46799999985433221
Q ss_pred -cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH-HHHHH
Q 029215 72 -PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE-ELRKL 149 (197)
Q Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (197)
..+++.+|++++++|++++.+..+. .+...+... +.|+++|+||+|+.+... ...++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence 1234568999999999987665543 344444444 899999999999975432 2233332 22222
Q ss_pred h---CCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 150 I---GSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 150 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+ +..+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 33489999999999999999999887643
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=8e-25 Score=174.69 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=112.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-eceeEEEEE-CCeEEEEEEEEcCCcccccccccCCCCCCcEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (197)
++..+|+++|++++|||||+++|....+...+.+++. +.....+.. ++ ..++||||||++.|..++..++..+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 3568899999999999999999987654333333332 221222222 23 3577999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHH---HHHh-CCCeEEE
Q 029215 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL---RKLI-GSPAYIE 157 (197)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 157 (197)
++|+|++++...+.. . .+..+... ++|+++++||+|+.+... . ....+.... +..+ +..++++
T Consensus 80 ILVVDa~dg~~~qt~-e-~l~~~~~~--~vPiIVViNKiDl~~~~~-----~----~v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 80 ILVVAADDGVMKQTV-E-SIQHAKDA--HVPIVLAINKCDKAEADP-----E----KVKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp EEECBSSSCCCHHHH-H-HHHHHHTT--TCCEEECCBSGGGTTTSC-----C----SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred EEEEECCCCccHHHH-H-HHHHHHHc--CCcEEEEEecccccccch-----H----HHHHHHHhhhhhHHhcCCCceEEE
Confidence 999999997666554 3 33344444 789999999999975321 0 001111111 1111 1237899
Q ss_pred eccCCCCCHHHHHHHHHHHHcC
Q 029215 158 CSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 158 ~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+||++|.|++++++++...+..
T Consensus 147 vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHTT
T ss_pred EECCCCCCchhHHHHHHHhhhc
Confidence 9999999999999999988754
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.2e-24 Score=169.84 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=100.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc--------cccccccCCCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR 76 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 76 (197)
.+|+++|.+|||||||+|+|.+..+ ..+..+++.+.........+ ..+.+|||||++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 6899999999999999999998654 23444444444443443444 467799999986 44555666788
Q ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 77 GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+|++++|+|++++.+..+. .+...+... +.|+++|+||+|+..... ++.++. ..+..+++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence 99999999999987665543 444555544 899999999999865321 001122 34544789
Q ss_pred EeccCCCCCHHHHHHHHHHHHcC
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
++||++|.|++++++++.+.+..
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEeCcCCCChHHHHHHHHHhcCc
Confidence 99999999999999999998864
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.3e-22 Score=161.33 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=110.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC----C---CCCCC-CceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY 75 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~----~---~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 75 (197)
.+.++|+++|..++|||||+++|.+.. . ..... +.+.+.....+..++ ..+.+|||||++.|...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 357999999999999999999998765 1 11111 111111122344455 6788999999999988888888
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-C--C
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-G--S 152 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 152 (197)
..+|++++|+|++++...+.. ..+..+... ++|+++|+||+|+.+... .....+++.++.... + .
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence 999999999999984222221 222233334 789999999999975321 012234555555544 2 2
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 153 PAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
.+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 163 SSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 48999999999999999999999774
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.3e-22 Score=162.64 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=113.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC-----CC---------CceeeceeEEEEE---CCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YV---------PTVFDNFSANVVV---DGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----~~---------~t~~~~~~~~~~~---~~~~~~l~i~D~~G~ 64 (197)
++..+|+++|+.++|||||+++|+.. .+... .. +.+.......+.+ ++..+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 35789999999999999999999862 22110 00 0000000111222 455689999999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHH
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGE 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
.+|...+...++.+|++++|+|++++.+++.. ..|..... . ++|+++|+||+|+.... ..+...
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~ 145 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE 145 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence 99998888889999999999999998777666 55554433 3 78999999999997542 233445
Q ss_pred HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 145 ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 145 ~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
++...++.. +++++||++|.|++++++++.+.+..+.
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 566666652 4899999999999999999999987654
No 148
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=4.8e-22 Score=152.27 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=87.0
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD 121 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 121 (197)
+.+++|||+|++.++..|..++++++++|||||+++ ..++.+. ..|+..+... ..++|+++++||+|
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence 778899999999999999999999999999999999 6788888 4454444432 36899999999999
Q ss_pred ccCCcccc-----cCCCC-CccccHHHHHHHHH-----------HhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 122 LRDDKQFF-----IDHPG-AVPITTAQGEELRK-----------LIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 122 ~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
+....... .-.+- ...++.+++..++. ..++ .+++|||+++.||+++|+++.+.+.+.
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 96432100 00000 01256677777662 2233 788999999999999999999988643
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=2.4e-22 Score=156.95 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=114.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC--------CCCCC----------CCCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
....++|+++|++++|||||+++|... .+... ..+.+.. .....+......+.+|||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN--TAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS--CEEEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE--eeeeEeccCCeEEEEEECCCh
Confidence 456799999999999999999999863 11110 0011111 122223323356789999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
++|...+...+..+|++++|+|++++...+. ..++..+... ++| +++++||+|+..... ......+++
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~ 154 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEV 154 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHH
Confidence 9998888788899999999999998755443 3455555555 788 889999999974221 000123456
Q ss_pred HHHHHHhCC----CeEEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 029215 144 EELRKLIGS----PAYIECSSKTQQN------------------VKAVFDAAIKVVLQP 180 (197)
Q Consensus 144 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~ 180 (197)
.++...++. .+++++||++|.| +.++++.+.+.+..+
T Consensus 155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 667777663 5899999999987 888888888877644
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=142.49 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=105.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCC---ceeeceeEEEEECCeEEEEEEEEcCCcc-----------cccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYNR 69 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~~ 69 (197)
...++|+|+|.+|+|||||+++|++..+.....+ ++...........+ ..+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999998876444333 22333344555666 466799999943 2333
Q ss_pred cccCCCCCCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 70 LRPLSYRGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
.+...++.+|++++|+|+++...... ....+...+... ...|+++|+||+|+....... .......+.++.+.+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~----~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLH----DYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHH----HHHHhchHHHHHHHH
Confidence 34455678999999999876433211 112222222211 246999999999987543210 000011246778888
Q ss_pred HhCCCeEEEeccCCC-----CCHHHHHHHHHHHHcC
Q 029215 149 LIGSPAYIECSSKTQ-----QNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 149 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~ 179 (197)
..+. .++.+++..+ .++.++|+.+.+.+..
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8887 7777776643 6899999998887743
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.87 E-value=9.5e-22 Score=157.42 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=83.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC------------------CCCC-----CCCceeeceeEEEEECCeEEEEEEEEc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT------------------FPTD-----YVPTVFDNFSANVVVDGSTVNLGLWDT 61 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~------------------~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~ 61 (197)
+..+|+|+|.+++|||||+++|+... ..+. ..+.+.......+...+ +.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 56899999999999999999996211 0000 00111111223344455 67889999
Q ss_pred CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
||+.+|...+..+++.+|++++|+|++++.+.... ..| ..+... ++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 99999999888899999999999999997766665 434 444444 8999999999999653
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=7.5e-22 Score=154.36 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=109.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCC---CCCCCCC--ceeeceeE-EEEE-------------C--C----eEEEEE
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG 57 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~ 57 (197)
....++|+++|+.++|||||+++|.+.. +.....+ |....+.. .+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998532 2222222 22211111 1111 0 1 136789
Q ss_pred EEEcCCcccccccccCCCCCCcEEEEEEeCCCH----hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
||||||++.|...+...+..+|++++|+|++++ ++.+.+ . .+... ...|+++++||+|+.+...
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~------ 154 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK------ 154 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH------
Confidence 999999999887777777889999999999864 333333 2 22222 1358999999999976421
Q ss_pred CCccccHHHHHHHHHHh--CCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 134 GAVPITTAQGEELRKLI--GSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.....++++++.... ...+++++||++|.|+++++++|.+.+..+.
T Consensus 155 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 155 --ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp --HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred --HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 001233444554431 2348999999999999999999998876543
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.4e-21 Score=153.77 Aligned_cols=159 Identities=16% Similarity=0.100 Sum_probs=103.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--CCCCC------------------------------CCceeeceeEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (197)
+..++|+++|.+++|||||+++|+... +.... .+.+.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 467999999999999999999995431 11100 1111111122233344
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 124 (197)
..+.||||||+++|...+...+..+|++++|+|++++... ... ...+..+... ++| +++++||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence 5788999999999998888889999999999999986431 111 2222333333 677 899999999954
Q ss_pred CcccccCCCCCccccHHHHHHHHHHhCC-----CeEEEeccCCCCCHHHHHH
Q 029215 125 DKQFFIDHPGAVPITTAQGEELRKLIGS-----PAYIECSSKTQQNVKAVFD 171 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 171 (197)
.... ........++...+.+..++ .+++++||++|.|+.++++
T Consensus 170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2100 00001223445556656553 3799999999999999654
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=2.8e-22 Score=157.72 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhC--CCCCCC------------------------------CCceeeceeEEEE
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV 48 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (197)
|.....++|+++|++++|||||+++|+.. .+.... .+.+.+.....+.
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 56677899999999999999999999864 332110 0111111111222
Q ss_pred ECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHH------HHHHHHHhhhCCCC-CEEEEeecCC
Q 029215 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVA------KKWIPELRHYAPGV-PIILVGTKLD 121 (197)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~-p~iiv~nK~D 121 (197)
..+ +.+++|||||+++|...+..++..+|++++|+|+++ .+|+... ......+... +. |+++++||+|
T Consensus 81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~D 155 (435)
T 1jny_A 81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMD 155 (435)
T ss_dssp CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGG
T ss_pred cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEccc
Confidence 233 578899999999999888889999999999999998 5565330 2222222222 44 6899999999
Q ss_pred ccCCcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHHH
Q 029215 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 170 (197)
+.+... .........++++.++...+. .+++++||++|.|+.+++
T Consensus 156 l~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 156 LTEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp GSSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 976210 000001234567777777763 479999999999997544
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=1.1e-21 Score=152.70 Aligned_cols=163 Identities=20% Similarity=0.173 Sum_probs=112.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC-------CCCCC----------CCCceeeceeEEEEECCeEEEEEEEEcCCcccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~-------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (197)
..++|+++|++++|||||+++|... .+... ..+.+... ....+......+.+|||||+++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 4689999999999999999999863 11100 00111111 11222223356789999999999
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHH
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL 146 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (197)
...+...+..+|++++|+|++++...+.. ..| ..+... ++| +++++||+|+..... ......++++++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~ 148 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIREL 148 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHH
Confidence 88888889999999999999986544443 333 444444 788 689999999975221 000123566777
Q ss_pred HHHhCC----CeEEEeccCCCCC----------HHHHHHHHHHHHcCC
Q 029215 147 RKLIGS----PAYIECSSKTQQN----------VKAVFDAAIKVVLQP 180 (197)
Q Consensus 147 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~ 180 (197)
.+.++. .+++++||++|.| +.++++.+.+.+..+
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 777763 4899999999764 899999999887654
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=6e-21 Score=146.54 Aligned_cols=161 Identities=20% Similarity=0.156 Sum_probs=108.4
Q ss_pred eE-EEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCccc---------ccccccCCC
Q 029215 7 IK-CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY 75 (197)
Q Consensus 7 ~~-i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~ 75 (197)
++ |+++|++|+|||||+++|.+..+. .++..++.+.....+.+++ ..+.+|||+|... |...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 999999999999999999987652 2333444455566777777 4567999999622 222222 46
Q ss_pred CCCcEEEEEEeCCCHh--HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHh-C
Q 029215 76 RGADVFILAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLI-G 151 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (197)
..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+..... ......+..+++.+ .
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~ 325 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS 325 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence 7899999999999876 44444 55666665543 5889999999999865321 01112333444554 2
Q ss_pred -CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 152 -SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
..+++++||+++.|+++++++|.+.+..+
T Consensus 326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 326 PIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 23678999999999999999999876543
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=3.8e-21 Score=155.74 Aligned_cols=168 Identities=16% Similarity=0.164 Sum_probs=106.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEE-----------C-----CeEEEEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-----------D-----GSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~-----------~-----~~~~~l~i~D~~G~~~ 66 (197)
.+..+|+++|++++|||||+++|.+..+............ ...... . .....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4578999999999999999999987644332211110000 001110 0 0112478999999999
Q ss_pred ccccccCCCCCCcEEEEEEeCCC---HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc-------CCCCCc
Q 029215 67 YNRLRPLSYRGADVFILAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI-------DHPGAV 136 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-------~~~~~~ 136 (197)
|..++...++.+|++++|+|+++ ++++... . .+... ++|+++++||+|+........ ......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999999 5555443 2 23333 899999999999975321000 000000
Q ss_pred cc---cHH---HHHHHHHHh--------------CCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 137 PI---TTA---QGEELRKLI--------------GSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 137 ~~---~~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
.+ ..+ +........ +..+++++||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00 000 111111111 1237899999999999999999998765
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=1.1e-21 Score=148.26 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=94.3
Q ss_pred EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCC----------CHhHHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029215 53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121 (197)
Q Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 121 (197)
.+.+++||++|++.++..|..++++++++|||||++ +..++.+....|...+.... +++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378899999999999999999999999999999998 67888888444444444433 6899999999999
Q ss_pred ccCCcccc-----cCCCCCccccHHHHHHHHHHhC--------------------------CCeEEEeccCCCCCHHHHH
Q 029215 122 LRDDKQFF-----IDHPGAVPITTAQGEELRKLIG--------------------------SPAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~Sa~~~~~i~~~~ 170 (197)
+...+... .-.........+++.++..... ...+++|||+++.+|+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 96532211 0001111225666665544321 2256789999999999999
Q ss_pred HHHHHHHcC
Q 029215 171 DAAIKVVLQ 179 (197)
Q Consensus 171 ~~i~~~~~~ 179 (197)
+.+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.86 E-value=1.3e-21 Score=151.02 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=94.3
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCC----------HhHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD 121 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D 121 (197)
+.+++|||+|++.++..|..++++++++|||||+++ ..++.+. ..|+..+... .+++|+++|+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 788999999999999999999999999999999999 8899998 6676666554 36899999999999
Q ss_pred ccCCcc---cc------cCCC----------C-CccccHHHHHHHH-----HHh-------CCCeEEEeccCCCCCHHHH
Q 029215 122 LRDDKQ---FF------IDHP----------G-AVPITTAQGEELR-----KLI-------GSPAYIECSSKTQQNVKAV 169 (197)
Q Consensus 122 ~~~~~~---~~------~~~~----------~-~~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~ 169 (197)
+..... +. ++.. . ......+++..++ +.. ....+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 965432 10 0000 0 0001245566553 221 1225678999999999999
Q ss_pred HHHHHHHHcCCc
Q 029215 170 FDAAIKVVLQPP 181 (197)
Q Consensus 170 ~~~i~~~~~~~~ 181 (197)
|.++.+.+.+..
T Consensus 376 F~~v~~~I~~~~ 387 (402)
T 1azs_C 376 FNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998886544
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=2.4e-22 Score=149.28 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=89.9
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhhCCC-CCCC-------CCcee-eceeEEEEECCeEEEEEEEEcCCcccc-----
Q 029215 2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY----- 67 (197)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~-------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~----- 67 (197)
.+...++|+|+|.+|+|||||+|+|+.... ...+ .+|.. ......+..++..+.+++|||||...+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 345679999999999999999999876543 3333 23332 222333334555578999999997322
Q ss_pred --cccc------------------cCCC--CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 68 --NRLR------------------PLSY--RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 68 --~~~~------------------~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
..+. +..+ ..+|+++++++.++.... .....++..+.. ++|+++|+||+|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCH
Confidence 1111 1111 237899999977653211 111345555544 7999999999998643
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.. .......+.+.....+. +++++||+++.|+++++++|.+.+
T Consensus 160 ~e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EE--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HH--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HH--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 21 00112234445556676 789999999999999999998865
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.3e-22 Score=139.51 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=83.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCC---CCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCC---
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--- 77 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~--- 77 (197)
...++|+++|++|||||||+++|.+..+.. .+.++... ....+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 456899999999999999999999887543 11222111 1123567899999999888777766655
Q ss_pred -CcEEEEEEeCC-CHhHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCccCCc
Q 029215 78 -ADVFILAFSLI-SKASYENVAKKWIPELRHY-----APGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~ 126 (197)
+|++++|||++ +.+++... ..|+..+... .++.|+++|+||+|+....
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 89999887 4554444322 2489999999999997654
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2.3e-21 Score=154.41 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=97.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--CCC------------------------------CCCCceeeceeEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------------DYVPTVFDNFSANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~ 51 (197)
...+||+++|.+++|||||+++|+... +.. ...+.+.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 457999999999999999999997541 110 00111111112223233
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
.+.+.||||||+++|...+..++..+|++++|+|++++.++.. ........+... ...|+++|+||+|+.+..
T Consensus 110 -~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp -SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred -CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 3678899999999999888888999999999999998754321 112222233322 235699999999997632
Q ss_pred ccccCCCCCccccH----HHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215 127 QFFIDHPGAVPITT----AQGEELRKLIGS----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 127 ~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (197)
. ... +++..+....+. .+++++||++|.|+++
T Consensus 188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 2 222 233444444443 3789999999999874
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=1.6e-20 Score=137.47 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=104.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCC-C--ceeeceeEEEEECCeEEEEEEEEcCCcc--------cccccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P--TVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLR 71 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~ 71 (197)
....++|+|+|.+|+|||||+|++++........ + ++..........++ ..+++|||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3467999999999999999999999876543222 2 33333344555666 567799999963 222222
Q ss_pred cCC----CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCccCCcccccCCCCCccccHHHH
Q 029215 72 PLS----YRGADVFILAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQG 143 (197)
Q Consensus 72 ~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (197)
..+ .+.+|++++|+|+++....+ ..++..+... ..+.|+++++||+|+........ ......+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~----l~~~~~~~l 168 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDY----VSNTENRAL 168 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH----HHHCCCHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHH----HhhcccHHH
Confidence 222 28899999999998532221 2223333322 13689999999999965321000 000011456
Q ss_pred HHHHHHhCCCeEEEeccCC-----CCCHHHHHHHHHHHHcC
Q 029215 144 EELRKLIGSPAYIECSSKT-----QQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~-----~~~i~~~~~~i~~~~~~ 179 (197)
+.+.+..+. .++.+++.. +.|++++++.|.+.+..
T Consensus 169 ~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 777778876 676666554 58999999999888764
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=1.6e-22 Score=160.25 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=106.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCce-eeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (197)
++..+|+++|++++|||||+++|....+.....+.+ .+.....+..++ ..++||||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 467899999999999999999998754433222211 111111222334 35779999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC-CCeEEEeccC
Q 029215 83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG-SPAYIECSSK 161 (197)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 161 (197)
+|+|++++...+.. . .+..+... ++|+++++||+|+........... .... ..++..++ ..+++++||+
T Consensus 80 LVVda~~g~~~qT~-e-~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~-l~~~-----~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-E-AIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE-LSQY-----GILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp EEEETTTBSCTTTH-H-HHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC-CCCC-----CCCTTCCSSSCEEEECCTT
T ss_pred EEeecccCccHHHH-H-HHHHHHhc--CceEEEEEEeccccccCHHHHHHH-HHHh-----hhhHHHhCCCccEEEEeee
Confidence 99999885332222 2 22233333 899999999999975321000000 0000 00111222 2489999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029215 162 TQQNVKAVFDAAIKV 176 (197)
Q Consensus 162 ~~~~i~~~~~~i~~~ 176 (197)
+|.|++++|+++...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998764
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=5.1e-21 Score=150.58 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=102.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC--CCCC----------CCCceeece--------------------eEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------~~~t~~~~~--------------------~~~~~~~~ 51 (197)
+..++|+++|.+++|||||+++|+... +... ..+++...+ ........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456999999999999999999998643 1111 112211000 00111222
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccCCccccc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFI 130 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~ 130 (197)
....+.+|||||+++|...+..++..+|++++|+|++++...+.. .++..+... +. |+++|+||+|+.+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~--- 174 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDE--- 174 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCH---
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccH---
Confidence 235788999999999988887888999999999999987543332 343444433 44 5899999999975311
Q ss_pred CCCCCccccHHHHHHHHHHhC--C--CeEEEeccCCCCCHHHH
Q 029215 131 DHPGAVPITTAQGEELRKLIG--S--PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~ 169 (197)
.......++...+++.++ . .+++++||++|.|++++
T Consensus 175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 000012345666777776 1 37899999999999874
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-22 Score=155.63 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=84.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC-CCCCCC--------Cceee-ceeEEEEECCeEEEEEEEEcCCc-------ccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV--------PTVFD-NFSANVVVDGSTVNLGLWDTAGQ-------EDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~--------~t~~~-~~~~~~~~~~~~~~l~i~D~~G~-------~~~ 67 (197)
..++|+|+|++|+|||||+++|+... +...+. ++... .....+...+..+.+++|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987643 322221 22221 12222334566678999999998 556
Q ss_pred ccccc-------CCC-----------CCCcEEEEEEeCCC-HhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215 68 NRLRP-------LSY-----------RGADVFILAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 68 ~~~~~-------~~~-----------~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 128 (197)
..++. .++ .++++.+++|++++ ..++......|+..+. .++|+++|+||+|+.....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e- 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE- 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence 55543 222 22222334444443 3344444334555443 4799999999999976432
Q ss_pred ccCCCCCccccH--HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 129 FIDHPGAVPITT--AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+.. +++..++...++ +++++||+++.+ ++.|.++.+.+..
T Consensus 192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 322 466677777777 899999999998 7778777776643
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.8e-21 Score=154.07 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=101.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCC--------------------------------CCceeeceeEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~ 51 (197)
...++|+++|.+++|||||+++|+.....-.. .+.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45799999999999999999999865321100 1112222222333344
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHH------HHHHHHHHHHHhhhCCCC-CEEEEeecCCccC
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY------ENVAKKWIPELRHYAPGV-PIILVGTKLDLRD 124 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~ 124 (197)
..+.||||||++.|...+...+..+|++|+|+|++++... ... ...+..+... +. |+++|+||+|+.+
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l--gi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL--GIHNLIIAMNKMDNVD 319 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT--TCCEEEEEEECTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc--CCCeEEEEEecccccc
Confidence 5678999999999999888999999999999999875310 111 2222233322 44 4999999999976
Q ss_pred CcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHHH
Q 029215 125 DKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKAV 169 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~ 169 (197)
... ........++..+....+. .+++++||++|.|+.++
T Consensus 320 ~~~------~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQ------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCH------HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhH------HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 321 0000123344455555553 48999999999999865
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=2.2e-21 Score=149.31 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=104.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 87 (197)
+|+++|.+++|||||+++|+. ...+.+.....+...+ ..+++|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~-------~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK-------KGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE-------EEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHh-------CCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 899999999999999999971 1111111112222333 468899999999998777777889999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCeEEE--eccC
Q 029215 88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIE--CSSK 161 (197)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~ 161 (197)
++.. ..+. ..+...+... ++|. ++++| |+|+ +... .....++++++....+ ..++++ +||+
T Consensus 93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~--------~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~ 159 (370)
T 2elf_A 93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA--------IDELKAKLKVITSGTVLQDWECISLNTNKS 159 (370)
T ss_dssp TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH--------HHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH--------HHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 5443 2233 4555555555 7888 89999 9999 4321 0001244555555443 248999 9999
Q ss_pred C---CCCHHHHHHHHHHHHcCC
Q 029215 162 T---QQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 162 ~---~~~i~~~~~~i~~~~~~~ 180 (197)
+ +.|++++++.|.+.+...
T Consensus 160 ~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 160 AKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp SSSTTTTHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHhhcccc
Confidence 9 999999999999887543
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=3.8e-22 Score=157.95 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=100.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCC--------cccccccccCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY 75 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~ 75 (197)
..+|+++|.+|||||||+|+|.+..+. .+..+++.+.........+ ..+++||||| ++.+...+..++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 578999999999999999999986542 3333333333333333333 5678999999 555566666778
Q ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeE
Q 029215 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAY 155 (197)
Q Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (197)
+++|++++|+|+.+..+..+ ..+...+... +.|+++|+||+|+..... ...++ ...+....
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~ 161 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP 161 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence 89999999999887544333 3444555554 899999999999864321 11111 12344456
Q ss_pred EEeccCCCCCHHHHHHHHHHHHcC
Q 029215 156 IECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
+++||++|.|+.++++++.+.+..
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred EEeecccccchHHHHHHHHhhccc
Confidence 799999999999999999887653
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=1.6e-20 Score=148.44 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=103.5
Q ss_pred CC-CcceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------------------CCCceeeceeEEE
Q 029215 1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV 47 (197)
Q Consensus 1 ~~-~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~ 47 (197)
|. +...++|+++|.+++|||||+++|+.. .+... ..+.+.+.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 44 446799999999999999999999863 22110 0111111111223
Q ss_pred EECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhH---H----HHHHHHHHHHHhhhCCCCC-EEEEeec
Q 029215 48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y----ENVAKKWIPELRHYAPGVP-IILVGTK 119 (197)
Q Consensus 48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~iiv~nK 119 (197)
...+ ..+.||||||+++|...+...+..+|++++|+|++++.. | +.. ..+..+... ++| +++++||
T Consensus 81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~~--~v~~iivviNK 154 (458)
T 1f60_A 81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVNK 154 (458)
T ss_dssp ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEEC
T ss_pred ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHHc--CCCeEEEEEEc
Confidence 3333 678899999999998888888999999999999998642 2 222 222333333 666 8999999
Q ss_pred CCccCCcccccCCCCCccccHHHHHHHHHHhCC----CeEEEeccCCCCCHHH
Q 029215 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS----PAYIECSSKTQQNVKA 168 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 168 (197)
+|+.+... .......+++..+++.+++ .+++++||++|.|+.+
T Consensus 155 ~Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99974211 0001233456667677764 4899999999999864
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1.6e-21 Score=154.57 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=91.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhh--CCCCC------------------------C------CCCceeeceeEEEEEC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVD 50 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~ 50 (197)
....++|+++|+.++|||||+++|+. +.+.. + ..+.+.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 45679999999999999999999974 22210 0 0011100101123334
Q ss_pred CeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh---HHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029215 51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLDLR 123 (197)
Q Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~ 123 (197)
+ ..+.||||||+++|...+...+..+|++|+|+|++++. +|. .. ...+..+... ++| +++++||+|+.
T Consensus 120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l~~~~~~--~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEP 194 (467)
T ss_dssp S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTST
T ss_pred C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcH-HHHHHHHHHc--CCCEEEEEEECccCC
Confidence 4 56789999999999998888899999999999999863 222 11 1222222333 787 99999999996
Q ss_pred CCcccccCCCCCccccHHHHHHHHHHh-CC-----CeEEEeccCCCCCHHHHH
Q 029215 124 DDKQFFIDHPGAVPITTAQGEELRKLI-GS-----PAYIECSSKTQQNVKAVF 170 (197)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~ 170 (197)
.... . ........+++..+.... ++ .+++++||++|.|+.+++
T Consensus 195 ~~~~---~-~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQW---S-EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSS---C-HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred Cccc---c-HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 4210 0 000012234566666665 43 369999999999998754
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1e-20 Score=160.25 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=112.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCC-------CCC--CCC-----Cceeece-eEEEEECCeEEEEEEEEcCCccccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FPT--DYV-----PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
...++|+++|++++|||||+++|.... +.. ..+ .+.+..+ ...+.+......++||||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 100 000 0010000 0112222333677899999999998
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccCCcccccCCCCCccccHHHHHHHH
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELR 147 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (197)
..+...+..+|++|+|+|++++...+.. .++..+... ++| +++++||+|+.+... ......+++.++.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~elL 442 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHHH
Confidence 8888889999999999999987544333 344455544 788 789999999975321 0001235667777
Q ss_pred HHhCC----CeEEEeccCCC--------CCHHHHHHHHHHHHcCC
Q 029215 148 KLIGS----PAYIECSSKTQ--------QNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 148 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~ 180 (197)
...+. .+++++||++| .|+.++++.|.+.+..+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 77763 48999999999 47999999998877643
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=3e-21 Score=144.97 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=100.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCC------CCc-----------------------eeec-------------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPT-----------------------VFDN------------- 42 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~t-----------------------~~~~------------- 42 (197)
..++|+|+|.+|+|||||+++|++..+.+.. .++ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999988764211 121 0000
Q ss_pred --------eeEEEEEC-CeEEEEEEEEcCCccc-------------ccccccCCCCCCcEEE-EEEeCCCHhHHHHHHHH
Q 029215 43 --------FSANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFI-LAFSLISKASYENVAKK 99 (197)
Q Consensus 43 --------~~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 99 (197)
....+.+. .....+.+|||||... +..+...+++.++.++ +|+|+++..+..+. ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 00000000 0125688999999742 2334455677777666 79999876544443 34
Q ss_pred HHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHH--hCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKL--IGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 100 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++..+... +.|+++|+||+|+.+... ...+..+..... .+..+++++||++|.|++++++++.+.
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55555444 799999999999975432 112221110001 133467889999999999999998873
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=5.4e-20 Score=131.27 Aligned_cols=163 Identities=13% Similarity=-0.014 Sum_probs=99.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCcccc----------cccc
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY----------NRLR 71 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~ 71 (197)
.....+|+++|++|+|||||++++.+..+.....++.+... ...+..++ .+.+|||||+... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999987664333333332221 22222323 3569999997431 1111
Q ss_pred cCCC---CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 72 PLSY---RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
..++ ..++++++++|++++.+.... .+...+... +.|+++++||+|+..... .......+..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence 1222 568999999999886554321 222223333 789999999999865321 0012345555555
Q ss_pred HhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 149 LIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
..+ ...++++||+++.|+++++++|.+.+.+.
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 554 23678899999999999999999887553
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=1.1e-19 Score=134.08 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=84.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCC-------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY------- 75 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~------- 75 (197)
+.++|+++|.+|+|||||+++|++..+ ...+.+++.......+..++ ..+++|||||+..+......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 579999999999999999999998764 44445554444455556666 4778999999987765543333
Q ss_pred --CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhC-C--CCCEEEEeecCCccCC
Q 029215 76 --RGADVFILAFSLISKASYENVAKKWIPELRHYA-P--GVPIILVGTKLDLRDD 125 (197)
Q Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~ 125 (197)
..+|++++|++++... +......|+..+.... . ..|+++|+||+|+.+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2689999999987654 3333245666665543 2 3499999999999643
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=6.5e-19 Score=141.20 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=80.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCC--CC------C--CCCCcee-------------eceeEEEEECCeEEEEEEEEc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP------T--DYVPTVF-------------DNFSANVVVDGSTVNLGLWDT 61 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~--~~------~--~~~~t~~-------------~~~~~~~~~~~~~~~l~i~D~ 61 (197)
+..+|+++|++++|||||+++|+... +. + ....+.. ......+...+ +.+++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 57899999999999999999998631 10 0 0000000 01112233444 67889999
Q ss_pred CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
||+..|...+..++..+|++++|+|++++..... ..+...+... ++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 9999998888888999999999999988643332 3344444444 8999999999999754
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=1.3e-19 Score=148.94 Aligned_cols=114 Identities=20% Similarity=0.163 Sum_probs=81.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCc-------------------eeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-------------------VFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t-------------------~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
.+..+|+++|+.|+|||||+++|..........++ ........+...+ +.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 45689999999999999999999843221100010 0011112233333 77889999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
+.|...+..+++.+|++++|+|+++....... .++..+... ++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence 99988888888999999999999887554443 444455544 89999999999986
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=8.9e-21 Score=153.89 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=90.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------------------CCCceeeceeEEEEECC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDG 51 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (197)
+..++|+++|++++|||||+++|+.. .+... ..+++.+.....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 45789999999999999999999642 11000 0011111111122222
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh---HH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCccCC
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD 125 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~ 125 (197)
...+.||||||++.|...+...+..+|++|+|+|++++. .+ .......+..+... ++| +++|+||+|+.+.
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 367889999999999998888999999999999998642 11 11102222233333 666 8999999999752
Q ss_pred cccccCCCCCccccHHHHHHHH-HHhCC----CeEEEeccCCCCCHH--------------HHHHHHHHHHc
Q 029215 126 KQFFIDHPGAVPITTAQGEELR-KLIGS----PAYIECSSKTQQNVK--------------AVFDAAIKVVL 178 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~i~~~~~ 178 (197)
.. ........++..+. ...++ .+++++||++|.|+. .+++.|.+.+.
T Consensus 331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 11 00001123334444 33454 278999999999998 67777766543
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=2.2e-20 Score=140.32 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=108.4
Q ss_pred HHHHHHhhCCCC-CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHH
Q 029215 21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAK 98 (197)
Q Consensus 21 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 98 (197)
+|+.++..+.|. ..+.+|.++.+...+..++ .+++||+ +++|+.+++.+++++|++++|||+++++ ++..+ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 577888888887 7888888866654432222 6789999 9999999999999999999999999987 67666 8
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhC--CCeEEEeccCCCCCHHHHHHHHHH
Q 029215 99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG--SPAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 99 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
.|+..+... ++|+++|+||+|+.+... + +++.++++.++ . +++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 888777664 899999999999965432 2 45677777776 5 8999999999999999988754
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=1.1e-18 Score=143.97 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=83.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCC------C------------CCCCceeeceeEEEEECCeEEEEEEEEcCC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP------T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 63 (197)
.+..+|+|+|++++|||||+++|+.. .+. + ....|.. .....+...+ +.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence 46799999999999999999999842 110 0 0111111 1122233444 6788999999
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+.+|...+..+++.+|++++|+|+++..+++.. ..|.. +... ++|+++++||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence 999988888889999999999999998777665 44543 4444 8999999999999754
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=6e-19 Score=145.66 Aligned_cols=172 Identities=11% Similarity=0.107 Sum_probs=107.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceee--c------eeEEEEE--------------------------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD--N------FSANVVV-------------------------- 49 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~--~------~~~~~~~-------------------------- 49 (197)
..++|+|+|.+|+|||||+|+|++..+.+ ...+++.. . .......
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 57899999999999999999999876422 22222210 0 0001111
Q ss_pred --------------------CCeE--EEEEEEEcCCcccc---cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHH
Q 029215 50 --------------------DGST--VNLGLWDTAGQEDY---NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL 104 (197)
Q Consensus 50 --------------------~~~~--~~l~i~D~~G~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (197)
.... ..+.+|||||.... ...+..+++++|++++|+|++++.+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 24789999996542 33455677889999999999988777766 5565555
Q ss_pred hhhCCCCCEEEEeecCCccCCcccccCCCCCccc--cHHHHHH-----HHHHhC-------CCeEEEeccC---------
Q 029215 105 RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--TTAQGEE-----LRKLIG-------SPAYIECSSK--------- 161 (197)
Q Consensus 105 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~--------- 161 (197)
... +.|+++|+||+|+........ ...... ..+...+ +....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~~~--ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLIDP--DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCSST--TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred Hhh--CCCEEEEEECcccccccccCh--hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 544 789999999999965421000 000000 0001111 111111 1368999999
Q ss_pred -----CCCCHHHHHHHHHHHHcCCc
Q 029215 162 -----TQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 162 -----~~~~i~~~~~~i~~~~~~~~ 181 (197)
++.|++++++.+.+.+...+
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred chhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998876543
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=3.2e-18 Score=141.30 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=83.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh--CCCCC-----------CC------CCceeeceeEEEEECCeEEEEEEEEcCCc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (197)
.+..+|+|+|.+++|||||+++|+. +.+.. ++ ..++.......+...+ +.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4678999999999999999999985 22210 00 0111111122334444 67889999999
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.+|...+..+++.+|++++|+|++++.+.... ..|. .+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence 99988888888899999999999998776665 4443 34444 8999999999999754
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=2.9e-18 Score=127.02 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=81.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC--CCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccccC---------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL--------- 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~--------- 73 (197)
..++|+++|.+|+|||||+++|++..+. ....+++.......+...+ ..+.+|||||+..+......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999999999999987652 3334443333333444455 67889999999776543221
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCC-C--CCEEEEeecCCccCC
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-G--VPIILVGTKLDLRDD 125 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~D~~~~ 125 (197)
....+|++++|+|++.. ++......|+..+..... + .|+++|+||+|+.+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 13468999999998653 343332466666655432 2 699999999999654
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=8.5e-18 Score=138.93 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=82.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC--CCCCC------------------CCCceeeceeEEEEEC-----CeEEEEEE
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------YVPTVFDNFSANVVVD-----GSTVNLGL 58 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------------~~~t~~~~~~~~~~~~-----~~~~~l~i 58 (197)
.+..+|+|+|+.++|||||+++|+.. .+... ...|.... ...+.+. +..+.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 45789999999999999999999743 11110 00011111 1112222 23478999
Q ss_pred EEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
|||||+.+|...+..+++.+|++|+|+|+++....+.. ..| ...... ++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence 99999999988888889999999999999988665554 444 333333 8999999999998654
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=3e-18 Score=133.26 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=106.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccc----cccccC---CCCCCc
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPL---SYRGAD 79 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~---~~~~~~ 79 (197)
.|+|+|++|+|||||++++..... ...+..++.......+..++ ...+.+||+||.... ..+... .++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987532 12333333222222333433 245779999997432 222211 245789
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEE
Q 029215 80 VFILAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYI 156 (197)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (197)
.+++++|++ ...+.++ ..+...+..+. .+.|.++|+||+|+... . ..+...+..+..+. +++
T Consensus 238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi 302 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL 302 (416)
T ss_dssp EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence 999999998 4455555 55555554443 26899999999998643 1 23344444445565 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHcCCch
Q 029215 157 ECSSKTQQNVKAVFDAAIKVVLQPPK 182 (197)
Q Consensus 157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~ 182 (197)
.+||+++.|+++++++|.+.+...+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEECCCccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999876543
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=8.1e-20 Score=137.17 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=86.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC-CCCCCC--------CCcee-eceeEEEEECCeEEEEEEEEcCCc-------ccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~-------~~~ 67 (197)
..++|+|+|++|+|||||+++|.+. .+.... .++.. ..........+....+++||++|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998764 433322 11111 111122222344578899999998 444
Q ss_pred ccccc-------CCC-------------CCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215 68 NRLRP-------LSY-------------RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 68 ~~~~~-------~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 127 (197)
..+.. .++ ..+++++|+.+.+.. +++.....++ .....+.|+++|+||+|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l---~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFM---KAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHH---HHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHH---HHHHhcCCEEEEEEeCCCCCHHH
Confidence 43322 111 123445555553321 2333212233 33334689999999999975322
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029215 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQP 180 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~ 180 (197)
.....+++.++++.+++ +++++||+++ |++++|.++.+.+...
T Consensus 173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence 01234677888889987 9999999999 9999999999988654
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=1.4e-19 Score=136.96 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=69.4
Q ss_pred EEEEEEEcCCccc-------------ccccccCCCCCCcEEEEEEeCCCHhHH-HHHHHHHHHHHhhhCCCCCEEEEeec
Q 029215 54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKASY-ENVAKKWIPELRHYAPGVPIILVGTK 119 (197)
Q Consensus 54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK 119 (197)
..+.+|||||... +......++..+|++++|+|.++.... .+. ..+...+... +.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence 4688999999753 233445567889999999997443211 111 2334444443 7999999999
Q ss_pred CCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEe---ccCC---CCCHHHHHHHHHHHHcCCc
Q 029215 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC---SSKT---QQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Sa~~---~~~i~~~~~~i~~~~~~~~ 181 (197)
+|+..... ...+.+.......+. +++++ |+.+ +.|+.++++.+.+.+...+
T Consensus 208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 99975432 112222110011112 55555 4445 7899999999988876543
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=133.98 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=82.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCC-C-------CCcee-eceeEEEEECCeEEEEEEEEcCCccccc-------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-Y-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN------- 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~-------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~------- 68 (197)
-.++|+|+|++|+|||||+++|++..+... + .++.. ......+...+....+.+||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 358899999999999999999998765221 1 11111 1111111223334578899999976531
Q ss_pred c------------------cccCCCCCCcEEEEEEeCCCH-hHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc
Q 029215 69 R------------------LRPLSYRGADVFILAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF 129 (197)
Q Consensus 69 ~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 129 (197)
. +.+..+.++++.+++|+.+.- .++......|+..+. .++|+++|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e-- 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE-- 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence 1 223455566655555554432 234443235666654 3799999999999965432
Q ss_pred cCCCCCccccH--HHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 130 IDHPGAVPITT--AQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
+.. ..+.+.+...++ +++++|++++.+++++|..+.+.+
T Consensus 185 --------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 --------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp --------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred --------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 333 677778888887 899999999999999998888764
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=2.7e-19 Score=137.72 Aligned_cols=154 Identities=20% Similarity=0.172 Sum_probs=96.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCcee-ece-----------------------------------------
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF----------------------------------------- 43 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~-~~~----------------------------------------- 43 (197)
..+|+|+|.+|||||||+++|.+..+.+...++.. ...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999776333222110 000
Q ss_pred -----------eEEEEE-CCeEEEEEEEEcCCcccc-------------cccccCCCCCCcEEEEEEeCCCHhHHHHHHH
Q 029215 44 -----------SANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVAK 98 (197)
Q Consensus 44 -----------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (197)
...+.+ ......+.+|||||...+ ..+...++.++|++++++|.++.+.......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 000010 011235789999998776 3345567789999999998765432221112
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215 99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDA 172 (197)
Q Consensus 99 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (197)
.+...+... +.|+++|+||+|+..... ...+.+..+....+. +|+++++..+.++++.+..
T Consensus 194 ~l~~~~~~~--~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 194 KISREVDPS--GDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHSCTT--CTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred HHHHHhccc--CCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence 333333332 789999999999976433 233334444444555 7889999988887765544
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=4.4e-18 Score=131.99 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=47.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEE--E-------------------EECC-eEEEEEEEEcCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN--V-------------------VVDG-STVNLGLWDTAG 63 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~--~-------------------~~~~-~~~~l~i~D~~G 63 (197)
++|+++|.+|||||||+|+|++... ..+++.++....... + .+++ ..+.++||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763 234444442222211 1 1222 246799999999
Q ss_pred cccc----ccccc---CCCCCCcEEEEEEeCCCH
Q 029215 64 QEDY----NRLRP---LSYRGADVFILAFSLISK 90 (197)
Q Consensus 64 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 90 (197)
+... ..+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22322 456899999999999874
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=3e-17 Score=117.95 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=95.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-------------eEEEEEC------------------CeE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVD------------------GST 53 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-------------~~~~~~~------------------~~~ 53 (197)
+..+|+++|.+|||||||+++|................. .....++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467999999999999999999986421111000000000 0001111 112
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.+|||+|+...... +...++.+++|+|+++..... ..+... . +.|+++|+||+|+.+...
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh------
Confidence 56779999996221111 112467899999997754211 111111 1 578999999999864321
Q ss_pred CCccccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 134 GAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
...++..+..+..+ ..+++++||++|.|++++++++.+.+....
T Consensus 172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 24455556555543 348999999999999999999999886544
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=3.5e-16 Score=125.91 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=82.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC------------------CCCCC-----CCCceeeceeEEEEECCeEEEEEEEEc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN------------------TFPTD-----YVPTVFDNFSANVVVDGSTVNLGLWDT 61 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~------------------~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~D~ 61 (197)
+.=+|+|+|+.++|||||..+|+.. .+.+. ..+.+...-...+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 4678999999999999999998621 11110 00001111122344555 77889999
Q ss_pred CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
||+.+|.....+.++-+|++|+|+|+.++-..+.. ..| .....+ ++|.++++||+|....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchhc
Confidence 99999999888899999999999999988666654 444 455555 8999999999998653
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.3e-15 Score=116.26 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=56.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc-
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN- 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~- 68 (197)
.++|+++|.+|+|||||+++|++..+ ..+++.++.......+.+.+. ...+++|||||+..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 37899999999999999999998764 233444332222223334432 1468899999998753
Q ss_pred ---ccccC---CCCCCcEEEEEEeCCC
Q 029215 69 ---RLRPL---SYRGADVFILAFSLIS 89 (197)
Q Consensus 69 ---~~~~~---~~~~~~~~i~v~d~~~ 89 (197)
.+... +++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 33333 3678999999999986
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=4.1e-18 Score=130.76 Aligned_cols=157 Identities=22% Similarity=0.189 Sum_probs=92.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC------Cce-----------------------ee-----------c---
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV------PTV-----------------------FD-----------N--- 42 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~t~-----------------------~~-----------~--- 42 (197)
..+|+|+|.+++|||||+++|++..+.+... ++. .. .
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999887642211 110 00 0
Q ss_pred ----e---eEEEEEC-CeEEEEEEEEcCCccc-------------ccccccCCCCCC-cEEEEEEeCCCHhHHHHHHHHH
Q 029215 43 ----F---SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGA-DVFILAFSLISKASYENVAKKW 100 (197)
Q Consensus 43 ----~---~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~ 100 (197)
+ ...+.+. .....+.||||||... +..+...++..+ ++++++.|++....-.+. ..+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~i 189 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKV 189 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HHH
Confidence 0 0001111 1125688999999642 223344455444 556666676653222222 234
Q ss_pred HHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH--HHHHhCCCeEEEeccCCCCCHHHHHHHHHH
Q 029215 101 IPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE--LRKLIGSPAYIECSSKTQQNVKAVFDAAIK 175 (197)
Q Consensus 101 ~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~ 175 (197)
+..+... +.|+++|+||+|+.+... ...+.... +....++.+++++||+++.|++++++++.+
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcC--CCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 899999999999975432 01111110 001123346778999999999999999876
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.67 E-value=6.8e-18 Score=121.73 Aligned_cols=153 Identities=17% Similarity=0.090 Sum_probs=91.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeecee-------------EEEEEC-Ce------------------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GS------------------ 52 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~------------------ 52 (197)
+.++|+++|.+|||||||+++|....+...+.++....+. ..+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999976554433344322211 112221 11
Q ss_pred -EEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccC
Q 029215 53 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 131 (197)
Q Consensus 53 -~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 131 (197)
...+.++|++|.-..... +-...+..+.++|+......... .... . +.|.++|+||+|+.+...
T Consensus 117 ~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~--~~~~iiv~NK~Dl~~~~~---- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK---HPGI---M--KTADLIVINKIDLADAVG---- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT---CHHH---H--TTCSEEEEECGGGHHHHT----
T ss_pred CCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh---hhhH---h--hcCCEEEEeccccCchhH----
Confidence 113456666663111100 11123455667775332111110 0111 1 578899999999865322
Q ss_pred CCCCccccHHHHHHHHHHhC-CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 132 HPGAVPITTAQGEELRKLIG-SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
...+++.++++..+ ..+++++||++|.|++++|+++.+.+.
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 34566666666653 348999999999999999999988764
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=7e-17 Score=123.97 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=68.6
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.||||||.... ....+..+|++++|+|.+..+....+ . ....+.|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence 56789999995321 11234789999999998776544322 1 1112569999999999864321
Q ss_pred CCccccHHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 134 GAVPITTAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
......+........+ ..+++++||++|.|+++++++|.+.+..
T Consensus 235 --~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 235 --ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp --HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0001111222211121 2489999999999999999999988753
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=2e-16 Score=133.06 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=84.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhhC--CC----------CCC-----C-CCceeec-eeEEEE------------ECC
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TF----------PTD-----Y-VPTVFDN-FSANVV------------VDG 51 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~----------~~~-----~-~~t~~~~-~~~~~~------------~~~ 51 (197)
..+..+|+|+|+.++|||||+++|+.. .. .+. . ..|+... ....+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345789999999999999999999863 11 110 0 0111111 111122 134
Q ss_pred eEEEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... .. ++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-GE--RIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-HT--TCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-Hc--CCCeEEEEECCCcc
Confidence 468899999999999999988899999999999999998887776 5554433 33 79999999999986
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=1.7e-16 Score=127.81 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=77.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC---CCCCCceeeceeEEE-------EEC-----------------------C
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANV-------VVD-----------------------G 51 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~t~~~~~~~~~-------~~~-----------------------~ 51 (197)
...+|+|+|.+|+|||||+|+|++..+. ....+++ ....... ..+ +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T-~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC-CSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc-ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4689999999999999999999988763 1222222 1110000 000 0
Q ss_pred eE---------EEEEEEEcCCccc-----------ccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC
Q 029215 52 ST---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV 111 (197)
Q Consensus 52 ~~---------~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (197)
.. ..+.||||||... |...+..++..+|++++|+|+++....... ..++..+... +.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence 00 2478999999864 333444556789999999999875433443 5566666554 68
Q ss_pred CEEEEeecCCccCC
Q 029215 112 PIILVGTKLDLRDD 125 (197)
Q Consensus 112 p~iiv~nK~D~~~~ 125 (197)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999999653
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.63 E-value=9.9e-17 Score=122.72 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=61.3
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.++||+|.... .....+.+|++++|+|++++...+.. .. .+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 46779999995321 12235689999999999876433222 11 11 1568899999999853210
Q ss_pred CCccccHHHHHHHHHH---------hCCCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 134 GAVPITTAQGEELRKL---------IGSPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
. ......+... ...++++.+||++|.|+++++++|.+.+.
T Consensus 230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0 0111222211 11247899999999999999999988753
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=1.1e-14 Score=111.61 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=54.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECC-------------------eEEEEEEEEcCCccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED 66 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~i~D~~G~~~ 66 (197)
++|+++|.+|+|||||++++++... ..+++.++...........+ ....+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999987542 23333333211111222221 224688999999876
Q ss_pred ccc----ccc---CCCCCCcEEEEEEeCCC
Q 029215 67 YNR----LRP---LSYRGADVFILAFSLIS 89 (197)
Q Consensus 67 ~~~----~~~---~~~~~~~~~i~v~d~~~ 89 (197)
+.+ +.. .+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 542 211 23678999999999986
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.60 E-value=5e-16 Score=118.56 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=64.9
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.||||||...+... ....+|++++|+|++..+.+... .. .. . +.|.++|+||+|+.....
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~--~--~~p~ivv~NK~Dl~~~~~------ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL--M--EVADLIVINKDDGDNHTN------ 211 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH--H--HHCSEEEECCCCTTCHHH------
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh--h--cccCEEEEECCCCCChHH------
Confidence 56889999996543322 35789999999999765432211 10 00 1 468899999999864311
Q ss_pred CCcccc--HHHHHHHHHHhC------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 134 GAVPIT--TAQGEELRKLIG------SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
.. ..+.+......+ ..+++++||++|.|+++++++|.+.+.
T Consensus 212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 112222222222 347899999999999999999988764
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=5.6e-15 Score=108.73 Aligned_cols=118 Identities=12% Similarity=-0.051 Sum_probs=69.0
Q ss_pred EEEEEEEcCCccccccccc------CCCCCCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccC
Q 029215 54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
+.+.+|||||+........ ..+.. +++++++|+....+..+....+ ....... +.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc--CCCeEEEEecccccc
Confidence 5788999999876533221 13456 8899999876433322221111 1112222 789999999999865
Q ss_pred CcccccCCCCCccc--cHHHH------------------HHHHHHhCC-CeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 125 DKQFFIDHPGAVPI--TTAQG------------------EELRKLIGS-PAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
...... .... ..+.. .++++.++. .+++++||+++.|++++++++.+.+.
T Consensus 186 ~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKER----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHH----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHH----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 321000 0000 00000 011234443 27899999999999999999988763
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=4.8e-16 Score=127.37 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=109.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh--CCCCC----CCCCcee-----------eceeEEEEECCeEEEEEEEEcCCccccc
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS--NTFPT----DYVPTVF-----------DNFSANVVVDGSTVNLGLWDTAGQEDYN 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~--~~~~~----~~~~t~~-----------~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (197)
.-||+|+|+.++|||||..+|+. +.... ....+.. +..+..+......+.++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45799999999999999999862 22111 0000000 0011111222233678899999999999
Q ss_pred ccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccc--------cC---------
Q 029215 69 RLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--------ID--------- 131 (197)
Q Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~~--------- 131 (197)
....+.++.+|++|+|+|+..+-..+.. ..| .....+ ++|.++++||+|....+... ..
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~-~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILF-HALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHH-HHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9888899999999999999987555543 333 445555 79999999999986542110 00
Q ss_pred ----CCCCccc-cHH-----------------------------HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 132 ----HPGAVPI-TTA-----------------------------QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 132 ----~~~~~~~-~~~-----------------------------~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
....... ..+ ............|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0000000 000 000111122345888899999999999999999988
Q ss_pred cCCch
Q 029215 178 LQPPK 182 (197)
Q Consensus 178 ~~~~~ 182 (197)
..+..
T Consensus 238 p~p~~ 242 (638)
T 3j25_A 238 YSSTH 242 (638)
T ss_dssp CCSGG
T ss_pred cCccc
Confidence 76643
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.7e-14 Score=106.73 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=91.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcccccccc-------cCCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRG 77 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~ 77 (197)
..+|+++|.|+||||||+|+|++... ..+++.|+.+.....+.+.+ ..++++||||.....+.. -..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999997543 45677777777777788888 467799999975332211 123467
Q ss_pred CcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHHHhCC
Q 029215 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGS 152 (197)
Q Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (197)
+|++++|+|++++..-.+....-+..+.....+.|.++++||.|...-.. .........+.++.+.+...+..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc
Confidence 99999999999874322221222222222224788999999999743211 01111122455666666665543
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=8.8e-14 Score=115.41 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=79.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC--------CCCCC-----C------CCceeeceeEEEEEC-----CeEEEEEEEE
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD-----Y------VPTVFDNFSANVVVD-----GSTVNLGLWD 60 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-----~------~~t~~~~~~~~~~~~-----~~~~~l~i~D 60 (197)
+.=||+|+|+.++|||||..+|+.. ...+. + .+.+.......+.+. ...+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4568999999999999999998621 11110 0 000000011122222 1358899999
Q ss_pred cCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccC
Q 029215 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 124 (197)
||||.+|.....+.++-+|++|+|+|+..+-..+.. ..|. ..... ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~-~a~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWR-QANKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHH--TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHH-HHHHc--CCCeEEEEccccccC
Confidence 999999999888889999999999999987665554 4443 44444 799999999999754
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=5.5e-15 Score=121.96 Aligned_cols=157 Identities=20% Similarity=0.128 Sum_probs=96.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCC-CCCCceee-------------------------------------------
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFD------------------------------------------- 41 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~t~~~------------------------------------------- 41 (197)
..+|+|+|.+++|||||+|+|++..+.+ ....++..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4699999999999999999999876522 11111100
Q ss_pred --------ceeEEEEECCeEEEEEEEEcCCccccc-------------ccccCCC-CCCcEEEEEEeCCCHhHHHHHHHH
Q 029215 42 --------NFSANVVVDGSTVNLGLWDTAGQEDYN-------------RLRPLSY-RGADVFILAFSLISKASYENVAKK 99 (197)
Q Consensus 42 --------~~~~~~~~~~~~~~l~i~D~~G~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~ 99 (197)
.....+...+ ...+.|+||||..... .+...++ ..+|++++|+|++......+. ..
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 208 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence 0001111111 1246799999964311 1122222 578999999999875333332 24
Q ss_pred HHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHH-H-HHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEE-L-RKLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 100 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
++..+... +.|+++|+||+|+..... ...+.... . ....++.+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 45555544 799999999999976432 11111110 0 001234467789999999999999998873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.52 E-value=4.9e-14 Score=105.80 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred cccccccccCCCCCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc-HH
Q 029215 64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT-TA 141 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~ 141 (197)
++++..+.+.+++++|++++|+|+++++ ++..+ ..|+..+... ++|+++|+||+|+.+... +. .+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~ 132 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE 132 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence 7788888888999999999999999986 77766 7887776664 899999999999965321 22 34
Q ss_pred HHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHH
Q 029215 142 QGEELRKLIGSPAYIECSSKTQQNVKAVFDAAI 174 (197)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 174 (197)
+...+++..+. +++++||++|.|++++++.+.
T Consensus 133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence 55667777787 899999999999999998764
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.43 E-value=6.6e-14 Score=97.92 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=69.6
Q ss_pred CCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHH---HHHHhhhC--CCCCEEEEeecC-CccCCcccccCCCCC
Q 029215 62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW---IPELRHYA--PGVPIILVGTKL-DLRDDKQFFIDHPGA 135 (197)
Q Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~p~iiv~nK~-D~~~~~~~~~~~~~~ 135 (197)
+||+.++.+|++|++++|++|||+|.+|.+.+. ...++ ...+.+.. .+.|++|++||. |+...
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---------- 178 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------- 178 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----------
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----------
Confidence 488899999999999999999999999986544 32444 44444432 589999999995 67443
Q ss_pred ccccHHHHHHHHHH----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 136 VPITTAQGEELRKL----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 136 ~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+..++.+.... ..+ .+..|||++|+|+.+-++|+.+.+..++
T Consensus 179 --ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 179 --MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp --CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred --CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 333333322111 122 4678999999999999999998776544
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1.4e-13 Score=104.71 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=63.0
Q ss_pred EEEEEEEcCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCC
Q 029215 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHP 133 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 133 (197)
+.+.|+||+|...-.. .....+|.+++++|.+..+..+.+ ... +. ..|.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchh------
Confidence 5677999999643211 224678999999998755332211 111 11 235678889999754221
Q ss_pred CCccccHHHHHHHHHHh---C------CCeEEEeccCCCCCHHHHHHHHHHHHc
Q 029215 134 GAVPITTAQGEELRKLI---G------SPAYIECSSKTQQNVKAVFDAAIKVVL 178 (197)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~ 178 (197)
......+.+.... . .++++.+||+++.|++++++.|.+...
T Consensus 211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222233333221 1 247889999999999999999988653
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=101.23 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=49.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCC-CCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCccccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN 68 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 68 (197)
..++|+++|.+|+|||||+++|.+..+. .+++.++.......+.+.+. ...+++|||||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999987542 23333333333333434332 1358899999987654
Q ss_pred c-------cccCCCCCCcEEEEEEeCCCHhH
Q 029215 69 R-------LRPLSYRGADVFILAFSLISKAS 92 (197)
Q Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s 92 (197)
+ .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 23345678999999999986543
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=94.30 Aligned_cols=107 Identities=8% Similarity=-0.053 Sum_probs=73.8
Q ss_pred cCCcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHH---HHHHHhhh--CCCCCEEEEeec-CCccCCcccccCCCC
Q 029215 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKK---WIPELRHY--APGVPIILVGTK-LDLRDDKQFFIDHPG 134 (197)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~ 134 (197)
.+||+..+.+|++|+++.|++|||+|.+|++.+... .+ +...+.+. ..+.|++|++|| .|+...
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak-~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------- 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQ-DEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------- 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHH-HHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHH-HHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence 468899999999999999999999999998754422 32 33444332 358999999996 587543
Q ss_pred CccccHHHHHHHHHH----hCCCeEEEeccCCCCCHHHHHHHHHHHHcCCc
Q 029215 135 AVPITTAQGEELRKL----IGSPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 135 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+..++.+.... ..+ .+..|||.+|+|+.+-++|+.+.+..++
T Consensus 264 ---ms~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 264 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred ---CCHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 333333322111 122 4668999999999999999999886554
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1.4e-10 Score=89.60 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=58.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCe---------------EEEEEEEEcCCcccc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY 67 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~ 67 (197)
...+++++|++|+|||||++.|++... ..+++.++.......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457899999999999999999998654 344455454444445555541 135789999996543
Q ss_pred cc-------cccCCCCCCcEEEEEEeCCC
Q 029215 68 NR-------LRPLSYRGADVFILAFSLIS 89 (197)
Q Consensus 68 ~~-------~~~~~~~~~~~~i~v~d~~~ 89 (197)
.+ .+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 12233578999999999864
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=1.6e-10 Score=88.93 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=73.7
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
..+.|..+...+.+.++++++|+|+++.. ..|...+.+...+.|+++|+||+|+.+.. ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence 45678888888888899999999999863 35555555555689999999999997542 22233
Q ss_pred HH----HHHHHhCCC--eEEEeccCCCCCHHHHHHHHHHHH
Q 029215 143 GE----ELRKLIGSP--AYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 143 ~~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
.. .+++..+.. +++.+||++|.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 33 335566652 689999999999999999998754
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=7.1e-09 Score=80.67 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=61.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCCC----C-ceeeceeEEEEECCeEEEEEEEEcCCccccc------------
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----P-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------ 68 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------ 68 (197)
.++++|+|++|+|||||++.|.+..+.+... + .............+....+.++|++|.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999998765422111 1 1111111112222223467899999853210
Q ss_pred -------------cccc--CCCCCC--cE-EEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 69 -------------RLRP--LSYRGA--DV-FILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 69 -------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
.... .....+ |+ ++|+.|...+-+..+. .++..+. .+.|+++|.||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 0000 012233 33 5556666554433333 4444444 48999999999998643
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=2.8e-10 Score=90.53 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=85.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHh------hCCC----CCCCCCcee-------e--ceeEEEE----------------
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYT------SNTF----PTDYVPTVF-------D--NFSANVV---------------- 48 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~------~~~~----~~~~~~t~~-------~--~~~~~~~---------------- 48 (197)
.....|+++|.+||||||++++|. +... .+.+.+... . .......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999987 2211 111121110 0 0110000
Q ss_pred ECCeEEEEEEEEcCCcccccc-cccC---C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029215 49 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD 121 (197)
Q Consensus 49 ~~~~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D 121 (197)
.....+.+.|+||||...... ++.. . +..+|.+++|+|++........ ...+.. ..|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence 000235678999999753221 1100 0 1268999999999876432211 222222 2575 89999999
Q ss_pred ccCCcccccCCCCCccccHHHHHHHHHHhCC-----------------CeEEEeccCCCCC-HHHHHHHHHHH
Q 029215 122 LRDDKQFFIDHPGAVPITTAQGEELRKLIGS-----------------PAYIECSSKTQQN-VKAVFDAAIKV 176 (197)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~-i~~~~~~i~~~ 176 (197)
...... .+.......+. .+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 12222233333 1223479999999 99999998876
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=4.5e-10 Score=86.49 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=71.8
Q ss_pred CcccccccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHH
Q 029215 63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQ 142 (197)
Q Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (197)
.++.|.++...+++.++++++|+|+++.++ .|...+.....+.|+++|+||+|+.+.. ...+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~ 119 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK 119 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence 477888888888888999999999999763 3333334444588999999999997642 22233
Q ss_pred HHH----HHHHhCC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 029215 143 GEE----LRKLIGS--PAYIECSSKTQQNVKAVFDAAIKVV 177 (197)
Q Consensus 143 ~~~----~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~ 177 (197)
..+ .++..+. .+++.+||++|.|++++++.+.+..
T Consensus 120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 333 3455565 3688999999999999999998765
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.93 E-value=7.7e-11 Score=90.75 Aligned_cols=140 Identities=10% Similarity=0.082 Sum_probs=78.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC------CC-CCCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccc----ccC-
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN------TF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RPL- 73 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~----~~~- 73 (197)
..+++++|.+|+|||||+|+|++. .. ....++++... ..+.+... +.++||||....... ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999875 21 12223333221 12223322 579999996432211 111
Q ss_pred ---C--CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccccHHHHHHHHH
Q 029215 74 ---S--YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK 148 (197)
Q Consensus 74 ---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
. ....+.++++++....-.+..+ .. +..+.. .+.|+++++||.|..+... .......+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~ 301 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYAN 301 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHH
T ss_pred HHHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHH
Confidence 1 1568899999987432111111 11 112222 2789999999999876442 2333344555
Q ss_pred HhCCCeEEEeccCCCCCH
Q 029215 149 LIGSPAYIECSSKTQQNV 166 (197)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i 166 (197)
..+. .+.+.++....++
T Consensus 302 ~~g~-~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 302 QLGE-LLSPPSKRYAAEF 318 (369)
T ss_dssp HBTT-TBCSSCGGGTTTC
T ss_pred hcCC-ccCCCCchhhhhc
Confidence 5665 5555555544443
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.92 E-value=6.7e-09 Score=76.58 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCC---------CCCceeeceeEEEEECC--eEEEEEEEEcCCcccccc-----
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVVVDG--STVNLGLWDTAGQEDYNR----- 69 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~--~~~~l~i~D~~G~~~~~~----- 69 (197)
.++++++|++|+|||||++.+.+...... ...+.. .....+.... -...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 58999999999999999999986422110 011110 0011111122 123677999998421100
Q ss_pred --c---------------------ccCCCCCCcEEEEEEeCC-CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 70 --L---------------------RPLSYRGADVFILAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 70 --~---------------------~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+ .+-.+..+++.++++|.. .+-+..+ ..++..+.. ..++++|++|+|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence 0 011233478889999854 2222222 234444443 3899999999998653
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=2.7e-08 Score=77.33 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=87.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhCCCCCCC----CCceeeceeEEEEECCeEEEEEEEEcCCcccccc-----cccCCCC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYR 76 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~ 76 (197)
...++++|++|+|||||++.+.+-.....- ............ .....-.+.+||++|...... +....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-cccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 458999999999999999999873221110 000000001111 111111467999998532111 1111233
Q ss_pred CCcEEEEEEeCC--CHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccccc-CCCCCccccHHHHHHHHH----H
Q 029215 77 GADVFILAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFI-DHPGAVPITTAQGEELRK----L 149 (197)
Q Consensus 77 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~ 149 (197)
..+..++ ++.. .... ..+...+... +.|+++|.||.|+.--.++.. ..+.......+..+++.. .
T Consensus 148 ~~~~~~~-lS~G~~~kqr-----v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKND-----IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GCSEEEE-EESSCCCHHH-----HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHH-----HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3455554 6765 3222 2333344444 789999999999742111100 001111112233344431 2
Q ss_pred hC--CCeEEEecc--CCCCCHHHHHHHHHHHHcCCc
Q 029215 150 IG--SPAYIECSS--KTQQNVKAVFDAAIKVVLQPP 181 (197)
Q Consensus 150 ~~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~ 181 (197)
.+ ....+.+|+ ..+.|++++.+.+.+.+...+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 22 336788999 556679999999998876544
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.82 E-value=1.6e-10 Score=88.96 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=63.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCC--------CCCCCceeeceeEEEEECCeEEEEEEEEcCCccccccccc------
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP------ 72 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~------ 72 (197)
.+++++|.+|+|||||+|+|++.... ...++++.. ...+.+.+. +.++||||......+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999875211 122222211 122223332 67999999643321110
Q ss_pred --C--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCc
Q 029215 73 --L--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126 (197)
Q Consensus 73 --~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 126 (197)
. .....+.++++++....-.+..+ . .+..+.. .+.|+++++||+|..+..
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence 0 13567888888887422111111 1 1112222 278999999999997653
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=5.8e-09 Score=77.38 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=66.8
Q ss_pred EEEcCCcc-cccccccCCCCCCcEEEEEEeCCCHhHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCC
Q 029215 58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135 (197)
Q Consensus 58 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 135 (197)
+-..||+. .........+.++|+++.|+|+.++.+... ....|+ .++|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~--------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA--------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence 44578875 233334456788999999999999866542 113332 389999999999996421
Q ss_pred ccccHHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHHHcC
Q 029215 136 VPITTAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKVVLQ 179 (197)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~ 179 (197)
..+...++.+..+. +++.+||+++.|++++++.+.+.+..
T Consensus 67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence 11222333344466 88999999999999999988877653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.56 E-value=7.2e-08 Score=71.50 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=34.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCC--CCCCCCceeeceeEEEEECCeEEEEEEEEcCCcc
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (197)
..++++++|.+|+|||||+|++.+... ....++++.... .+.... .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 468999999999999999999997653 222223332111 122222 46799999964
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=2.8e-07 Score=72.07 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=74.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh-----C-CC----CCCCCCce-------eeceeEEEEE-C----------------
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------FDNFSANVVV-D---------------- 50 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~-----~-~~----~~~~~~t~-------~~~~~~~~~~-~---------------- 50 (197)
++..|+++|++|+||||++..|.. + .. .+.+.+.. .......+.. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 367899999999999999977752 1 11 12221210 0000000110 0
Q ss_pred -CeEEEEEEEEcCCcccccc-cc---c--CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029215 51 -GSTVNLGLWDTAGQEDYNR-LR---P--LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123 (197)
Q Consensus 51 -~~~~~l~i~D~~G~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 123 (197)
...+.+.|+||+|...... +. . .....+|.+++|+|++........ ...+.+. -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence 0126778999999543221 00 0 112257899999999876443322 1233322 23557899999986
Q ss_pred CCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 124 DDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
.. ...+.......+. |+..++.
T Consensus 253 ~~--------------gG~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 253 AK--------------GGGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp SS--------------HHHHHHHHHTTCC-CEEEEEC
T ss_pred cc--------------ccHHHHHHHHHCC-CEEEEEc
Confidence 43 2234555556676 6666654
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.52 E-value=4.8e-08 Score=71.66 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=34.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCCCCC--CCCCceeeceeEEEEECCeEEEEEEEEcCCccc
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (197)
++++++|.+|+|||||+|+|.+..... ...+++.. ...+.... .+++|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG--IQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CC--SCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc--eEEEEeCC---CEEEEECCCccc
Confidence 689999999999999999999765421 12222111 11122222 467999999753
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.51 E-value=3.3e-08 Score=77.45 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=39.2
Q ss_pred EEEEEEEcCCcccccc-cc-----cCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCccC
Q 029215 54 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDLRD 124 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~D~~~ 124 (197)
+.+.|+||||...... +. ...+..+|.+++|+|++.... . ......+. +.. | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 5678999999654211 10 112336899999999876542 1 11222222 245 6 789999999853
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=1.9e-07 Score=69.91 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=62.8
Q ss_pred cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc--cHHHHHH
Q 029215 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--TTAQGEE 145 (197)
Q Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~ 145 (197)
..+.+..+.++|.+++|+|+.++..-......++...... ++|.++|+||+|+.+... . ..+....
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~ 144 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAE 144 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHH
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHH
Confidence 3445556789999999999987654333436665544444 899999999999976421 0 0123334
Q ss_pred HHHHhCCCeEEEeccCCCCCHHHHHHH
Q 029215 146 LRKLIGSPAYIECSSKTQQNVKAVFDA 172 (197)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (197)
..+..|. +++.+||.++.|++++++.
T Consensus 145 ~y~~~g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 145 DYRNIGY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred HHHhCCC-eEEEEecCCCCCHHHHHhh
Confidence 4445576 8899999999888776543
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.42 E-value=2.5e-07 Score=74.93 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=39.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeeceeEEEE----E-CCeEEEEEEEEcCCccc
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV----V-DGSTVNLGLWDTAGQED 66 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~l~i~D~~G~~~ 66 (197)
.+..+|+|+|.+|+|||||+|+|++....-...+++......... . ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456899999999999999999999865321223332111111111 1 11124567999999754
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.32 E-value=1.8e-07 Score=68.59 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=59.7
Q ss_pred cCCcccc-cccccCCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCcccc
Q 029215 61 TAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIT 139 (197)
Q Consensus 61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 139 (197)
.|||... .......+.++|+++.|+|+.++.+.... . +. .. ++|.++|+||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence 4666532 12334567889999999999988655421 1 11 11 78999999999996531 1
Q ss_pred HHHHHHHHHHhCCCeEEEeccCCCCCHHHHHHHHHHH
Q 029215 140 TAQGEELRKLIGSPAYIECSSKTQQNVKAVFDAAIKV 176 (197)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 176 (197)
.+...++.+..+. ++ .+||+++.|++++++.+.+.
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 1222334444566 67 99999999999998876543
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.21 E-value=2.4e-06 Score=66.79 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=51.6
Q ss_pred EEEEEEEcCCccc--ccc-cc---cC--CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCC
Q 029215 54 VNLGLWDTAGQED--YNR-LR---PL--SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125 (197)
Q Consensus 54 ~~l~i~D~~G~~~--~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 125 (197)
+.+.++||||... ... +. .. ....++.+++|+|+...+....... .+.+. -.+..+|+||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHHH--CSSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhcc--cCCcEEEEeccccccc
Confidence 5677999999543 111 10 00 0124689999999987644333322 33322 2457899999998642
Q ss_pred cccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 126 KQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
...+.......+. |+..++.
T Consensus 254 --------------~G~als~~~~~g~-Pi~fig~ 273 (433)
T 3kl4_A 254 --------------GGGALSAVVATGA-TIKFIGT 273 (433)
T ss_dssp --------------HHHHHHHHHHHTC-EEEEEEC
T ss_pred --------------chHHHHHHHHHCC-CEEEEEC
Confidence 2345566666776 7776665
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=3.4e-06 Score=62.95 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=53.8
Q ss_pred EEEEEEEcCCccc--ccc-ccc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215 54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (197)
Q Consensus 54 ~~l~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 124 (197)
+.+.++||||... ... +.. .....+|.+++|+|+....... . ....+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~-~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---D-LASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---H-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---H-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence 5678999999765 211 110 1233689999999987542221 1 1222222 356 678999999753
Q ss_pred CcccccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215 125 DKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 168 (197)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (197)
. ...+..+....+. |+..++ .|+++++
T Consensus 254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 2 2345566777776 776665 4555543
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.05 E-value=3.3e-06 Score=69.11 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998753
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=4.7e-05 Score=58.09 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcccccCCCCCccc-cHHHHHHHHHHhCCC
Q 029215 75 YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-TTAQGEELRKLIGSP 153 (197)
Q Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 153 (197)
..++|.+++|... ++..-......++...... ++|.++|+||+|+.+... . ..+.........|.
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY- 193 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC-
Confidence 5789999988654 4543222335555444444 789999999999965321 0 01112223334576
Q ss_pred eEEEeccCCCCCHHHHHHHH
Q 029215 154 AYIECSSKTQQNVKAVFDAA 173 (197)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~i 173 (197)
+++.+||.++.|++++...+
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CEEECBTTTTBTHHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHhc
Confidence 78999999999999887653
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.92 E-value=1.7e-07 Score=74.41 Aligned_cols=108 Identities=16% Similarity=-0.006 Sum_probs=60.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhCCCCCCCCCceeece-eEEEEECCeEEEEEEEEcCCccc--ccccc--------cC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL 73 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~--~~~~~--------~~ 73 (197)
....|+++|.+|+||||+.++|....... ...+..... .......+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887532100 011110000 00000011112335789888732 22222 34
Q ss_pred CCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEe
Q 029215 74 SYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117 (197)
Q Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~ 117 (197)
++...++.++|+|.++.. .... ..|...+... ..+++.+-
T Consensus 117 ~l~~~~G~~vV~D~tn~~-~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTT-RERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCCS-HHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCCC-HHHH-HHHHHHHHhc--CCcEEEEE
Confidence 454567889999999873 4443 6777766665 44555444
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.91 E-value=2.2e-05 Score=59.31 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred EEEEEEcCCcccccccccCC------CCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCccc
Q 029215 55 NLGLWDTAGQEDYNRLRPLS------YRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128 (197)
Q Consensus 55 ~l~i~D~~G~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 128 (197)
.+.++|++|........... .-.+|-.+++.|.......... ...+... --...+++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~--~~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEA--VKIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHH--SCCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHh--cCCCEEEEeCcCCccc---
Confidence 45579999964322111000 1136888999998766432222 2223222 1234788899997432
Q ss_pred ccCCCCCccccHHHHHHHHHHhCCCeEEEeccCCCCCHHH
Q 029215 129 FIDHPGAVPITTAQGEELRKLIGSPAYIECSSKTQQNVKA 168 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (197)
...+.......+. |+..++ +|+++++
T Consensus 284 -----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -----------GGAALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp -----------CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred -----------hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 2345567777787 776666 5555543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=8.2e-05 Score=58.43 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+..-|.|+|++++|||||+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456789999999999999999985
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=0.0005 Score=53.90 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=37.1
Q ss_pred EEEEEEEcCCcccccc-ccc-----CCCCCCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccC
Q 029215 54 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD 124 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 124 (197)
+.+.|+||||...... +.. ..+..++.+++|+|+......... ...+.. ..+ .-+|+||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence 6678999999644321 111 113367899999998765332222 122222 244 346889999753
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.56 E-value=5.2e-05 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888753
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=6.5e-05 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|||||||++.|...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 239
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.48 E-value=6.7e-05 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|.......|+|+|++|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 5555667899999999999999988765
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=4.5e-05 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
-.++++|++|+|||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999764
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.44 E-value=8e-05 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998875
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=0.00011 Score=51.44 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhCC
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
|+-...-.++|+|++||||||+++.|....
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444455679999999999999999987643
No 243
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.36 E-value=0.00013 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...-.++|+|++||||||+++.|..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999988864
No 244
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.36 E-value=0.00014 Score=50.28 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.3
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|+......|++.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 6677777899999999999999988864
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=0.00011 Score=50.71 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
++|+|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999875
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.34 E-value=0.00032 Score=52.41 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 029215 8 KCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~ 27 (197)
.++++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.34 E-value=0.00012 Score=51.10 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.32 E-value=0.00011 Score=50.16 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 029215 8 KCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~ 27 (197)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00018 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.--++|+|++|+|||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999998853
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.30 E-value=0.00014 Score=51.69 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998764
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.29 E-value=0.00015 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988763
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00019 Score=49.48 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
|+..+...|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34455678999999999999999887653
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.27 E-value=0.00016 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988763
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.26 E-value=0.00018 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.25 E-value=0.0002 Score=49.49 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-.++++|++|||||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999764
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00023 Score=50.11 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....++|+|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988765
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.23 E-value=0.00019 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
--|+|+|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999999864
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.20 E-value=0.0002 Score=50.37 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=21.7
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|+..+...|+|.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4444567899999999999999988864
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.17 E-value=0.00037 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
--.++++|++||||||+.+.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.16 E-value=0.00025 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.00023 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988653
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.14 E-value=0.00028 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999887654
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.13 E-value=0.00027 Score=47.85 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.5
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 029215 7 IKCVTVGDGAVGKTCMLISY 26 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l 26 (197)
.-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.12 E-value=0.00037 Score=47.52 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.11 E-value=0.00031 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|+++|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.10 E-value=0.0003 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.08 E-value=0.00035 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~ 27 (197)
.-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.08 E-value=0.00035 Score=47.27 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.07 E-value=0.00034 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.06 E-value=0.00029 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988653
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.05 E-value=0.00037 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++++|++|+|||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00036 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988663
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.04 E-value=0.00037 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999988765
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.04 E-value=0.00036 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.03 E-value=0.00037 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 276
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.02 E-value=0.00042 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988653
No 277
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.01 E-value=0.00041 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988853
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.00 E-value=0.00039 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.00 E-value=0.00044 Score=48.78 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.99 E-value=0.00047 Score=49.80 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00057 Score=47.65 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.....|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988864
No 282
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.98 E-value=0.00049 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999988754
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.00053 Score=47.81 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999988864
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.98 E-value=0.00041 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.98 E-value=0.00062 Score=49.14 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....+|+|.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988864
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00049 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999998763
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.98 E-value=0.00047 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988664
No 288
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.98 E-value=0.00042 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.++++|++|+|||||++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988765
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.97 E-value=0.00044 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988653
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00048 Score=51.42 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999988765
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.97 E-value=0.00051 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.97 E-value=0.00047 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=0.00045 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999988765
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.96 E-value=0.00041 Score=48.89 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.96 E-value=0.00067 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....-++|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457899999999999999988765
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.96 E-value=0.00057 Score=48.49 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.96 E-value=0.00047 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.96 E-value=0.00046 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988763
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.95 E-value=0.00048 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988664
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.00051 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00051 Score=49.84 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998774
No 302
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.00073 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.030 Sum_probs=21.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..++-|+|+|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999987753
No 303
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.93 E-value=0.00075 Score=47.05 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.....|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988864
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.93 E-value=0.00055 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988763
No 305
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.92 E-value=0.00071 Score=46.42 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.92 E-value=0.00055 Score=50.19 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988774
No 307
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.92 E-value=0.00048 Score=48.06 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..-.|+|+|++|+||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987754
No 308
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.92 E-value=0.00058 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00053 Score=47.87 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998876
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.91 E-value=0.00054 Score=49.25 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 029215 8 KCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~ 27 (197)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998876
No 311
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.00063 Score=49.30 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999988754
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00071 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+|+|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988765
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.90 E-value=0.00075 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...-|++.|++||||||+...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999999864
No 314
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.90 E-value=0.0006 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 315
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.90 E-value=0.00066 Score=47.78 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.89 E-value=0.00055 Score=47.16 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.89 E-value=0.00073 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00072 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.89 E-value=0.00065 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988864
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.88 E-value=0.00057 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.0007 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999988865
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.87 E-value=0.00071 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999988864
No 323
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.87 E-value=0.00059 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988653
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00072 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988754
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.85 E-value=0.00072 Score=46.40 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988854
No 326
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00059 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998643
No 327
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.85 E-value=0.00043 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=15.2
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 029215 7 IKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~ 27 (197)
--++|+|++|||||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 328
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.00096 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~ 27 (197)
.....|+|+|++|||||||++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999997765
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.84 E-value=0.00074 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 330
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.00059 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
-++|+|++|+|||||++.+....
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998643
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.81 E-value=0.00091 Score=46.79 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.00095 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999988764
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00036 Score=47.60 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|+|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988875
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.79 E-value=0.0007 Score=51.87 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988763
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.79 E-value=0.00073 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988754
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.78 E-value=0.00072 Score=47.67 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.77 E-value=0.0011 Score=46.50 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
....|+|+|++||||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988763
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.0008 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+...|+|.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988863
No 339
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.00099 Score=46.66 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999988864
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.73 E-value=0.0012 Score=46.05 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+|+|++|||||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 341
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.73 E-value=0.0012 Score=46.65 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998865
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.0012 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..+.++|++|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988875
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.0011 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999987765
No 344
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.72 E-value=0.00064 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999988765
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.00093 Score=49.13 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998876
No 346
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.71 E-value=0.00077 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988754
No 347
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.71 E-value=0.00072 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||+|++.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988875
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.70 E-value=0.00097 Score=46.06 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988853
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.69 E-value=0.0011 Score=47.13 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.68 E-value=0.001 Score=50.86 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988764
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.0012 Score=44.44 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 352
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.68 E-value=0.00099 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998865
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.0012 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999988764
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.00089 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999988764
No 355
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.67 E-value=0.00097 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988764
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.67 E-value=0.00097 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988653
No 357
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.67 E-value=0.0011 Score=46.91 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
|+|+|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67799999999999988764
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.66 E-value=0.0011 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988763
No 359
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.66 E-value=0.0011 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.65 E-value=0.0011 Score=46.90 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+-..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988754
No 361
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.64 E-value=0.0011 Score=48.11 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988854
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.64 E-value=0.00083 Score=45.91 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=16.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.63 E-value=0.0012 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999988764
No 364
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.63 E-value=0.0012 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3789999999999999988764
No 365
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0012 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999988764
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.61 E-value=0.0014 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=21.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988865
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0012 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~ 27 (197)
.-.++++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999999998876
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.60 E-value=0.00096 Score=46.21 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 369
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0019 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+...|+++|.+||||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988754
No 370
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.58 E-value=0.0013 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3789999999999999988764
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.57 E-value=0.0014 Score=45.35 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988865
No 372
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.57 E-value=0.0014 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999988764
No 373
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.57 E-value=0.0016 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988764
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.56 E-value=0.0014 Score=50.30 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
=.++|+|++|||||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999988875
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.55 E-value=0.0015 Score=44.16 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.55 E-value=0.00051 Score=48.26 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999988864
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0016 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.53 E-value=0.0016 Score=47.20 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 029215 7 IKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~ 27 (197)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998887
No 379
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.52 E-value=0.0017 Score=46.54 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..+.|+|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988863
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.52 E-value=0.0016 Score=44.65 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988764
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.51 E-value=0.0013 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.51 E-value=0.0016 Score=46.11 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0019 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988754
No 384
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.50 E-value=0.0013 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987764
No 385
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.50 E-value=0.0013 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999998763
No 386
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.0016 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999988763
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.50 E-value=0.002 Score=46.96 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999988864
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.49 E-value=0.0011 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999988764
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0026 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.--++++|++||||||++..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999987763
No 390
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.48 E-value=0.0016 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999988865
No 391
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.48 E-value=0.002 Score=47.54 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988863
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.46 E-value=0.0017 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|||||||++.+.+-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998763
No 393
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.44 E-value=0.0021 Score=45.72 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 394
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.42 E-value=0.0018 Score=44.30 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988754
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.41 E-value=0.002 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988865
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.39 E-value=0.0017 Score=50.20 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999998875
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.39 E-value=0.0022 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
..-|+|.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 467999999999999999988764
No 398
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.0021 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999988865
No 399
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.38 E-value=0.0012 Score=48.92 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 1 MSASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 1 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
|+.+ .+-|+|.|++||||||+.+.|..
T Consensus 1 Ms~~-~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence 5443 45699999999999999987754
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.35 E-value=0.0026 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988765
No 401
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.35 E-value=0.0097 Score=45.56 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 029215 9 CVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~ 27 (197)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999998876
No 402
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.35 E-value=0.0011 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 403
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.34 E-value=0.0035 Score=44.78 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...-|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999988865
No 404
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.34 E-value=0.0019 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
-.++|+|++|||||||++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998764
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.34 E-value=0.003 Score=43.86 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999988865
No 406
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.33 E-value=0.0024 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999876
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.32 E-value=0.002 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.+++.|+||+|||+++..+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999877754
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0018 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988753
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0026 Score=45.39 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998874
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0038 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.--++++|++||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999987763
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.28 E-value=0.0029 Score=41.99 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 029215 9 CVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~ 27 (197)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998865
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.28 E-value=0.0022 Score=47.56 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999887653
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.28 E-value=0.0027 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999987754
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0028 Score=41.73 Aligned_cols=24 Identities=13% Similarity=-0.063 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988764
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.25 E-value=0.0025 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
=+++++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988753
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.24 E-value=0.0038 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.--++|+|++|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999987763
No 417
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.24 E-value=0.0065 Score=47.69 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~ 27 (197)
+..=|.|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45567799999999999999654
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0025 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988754
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.21 E-value=0.0034 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.16 E-value=0.0033 Score=44.51 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 421
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.16 E-value=0.0034 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988765
No 422
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.14 E-value=0.0039 Score=44.49 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...++.++|+|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999988754
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0034 Score=46.08 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999988653
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.14 E-value=0.0022 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
--++|+|+.|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999865
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.13 E-value=0.0037 Score=46.22 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.12 E-value=0.0032 Score=46.67 Aligned_cols=23 Identities=13% Similarity=-0.096 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+.-+++.|+||+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999988765
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.11 E-value=0.0034 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.079 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 428
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.0039 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988865
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.0038 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.07 E-value=0.0047 Score=46.39 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 431
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.05 E-value=0.0045 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~ 27 (197)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999997554
No 432
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.05 E-value=0.0038 Score=49.53 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999988864
No 433
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.00 E-value=0.0039 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999988753
No 434
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.99 E-value=0.0063 Score=44.42 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhh
Q 029215 4 SRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 4 ~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...-.+++.|++|+|||+|+..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999988865
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0039 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++++|++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.98 E-value=0.004 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~ 30 (197)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999887753
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.97 E-value=0.005 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5689999999999999988865
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.96 E-value=0.0043 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999988765
No 439
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.94 E-value=0.0062 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.93 E-value=0.0062 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...-|+++|.+||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999865
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.92 E-value=0.0041 Score=45.66 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988764
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0047 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988764
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.90 E-value=0.0042 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988653
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0059 Score=43.65 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.87 E-value=0.0049 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988763
No 446
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.87 E-value=0.0048 Score=42.32 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998754
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.84 E-value=0.0057 Score=42.61 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998764
No 448
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.005 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
-++|+|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999876653
No 449
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.82 E-value=0.0054 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988764
No 450
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.81 E-value=0.0061 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888753
No 451
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.80 E-value=0.0089 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~ 27 (197)
...+|+++|++|+||||+...+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999996554
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.77 E-value=0.0051 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988865
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.77 E-value=0.006 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999988764
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.76 E-value=0.0044 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988663
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.76 E-value=0.0086 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999988765
No 456
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0048 Score=46.73 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 029215 9 CVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~ 28 (197)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999988765
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.75 E-value=0.0064 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.0057 Score=49.35 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|++|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 459
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.74 E-value=0.0029 Score=41.60 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
..|++.|++|+|||++.+.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4699999999999999987754
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.73 E-value=0.0059 Score=45.91 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhhC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~ 29 (197)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999988753
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.71 E-value=0.005 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999988865
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0069 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 463
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.0066 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999887653
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.67 E-value=0.0069 Score=45.45 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999988865
No 465
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.64 E-value=0.0059 Score=45.37 Aligned_cols=84 Identities=15% Similarity=0.034 Sum_probs=45.4
Q ss_pred EEEEEEEcCCcccccc--c--ccCCCC--CCcEEEEEEeCCCHhHHHHHHHHHHHHHhhhCCCCCEEEEeecCCccCCcc
Q 029215 54 VNLGLWDTAGQEDYNR--L--RPLSYR--GADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 127 (197)
+.+.|+||+|...... + ....+. ..+.+++|+|++.. ...+ ..+...+... + ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~-~~~~~~~~~l--~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDM-KHIVKRFSSV--P-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHH-HHHTTTTSSS--C-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHH-HHHHHHHhcC--C-CCEEEEeCCCcccc--
Confidence 5677999999764321 1 011122 36788899987643 1222 2332222211 2 23466799997532
Q ss_pred cccCCCCCccccHHHHHHHHHHhCCCeEEEe
Q 029215 128 FFIDHPGAVPITTAQGEELRKLIGSPAYIEC 158 (197)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
...+...+...+. |+..+
T Consensus 255 ------------~g~~~~~~~~~~~-pi~~i 272 (296)
T 2px0_A 255 ------------LGSVFNILAESKI-GVGFM 272 (296)
T ss_dssp ------------CHHHHHHHHTCSC-CCSEE
T ss_pred ------------hhHHHHHHHHHCc-CEEEE
Confidence 2255566677776 55444
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.63 E-value=0.011 Score=44.15 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=47.5
Q ss_pred EEEEEEEcCCcccccc-c----------ccCCC-CCCcEEEEEEeCCCHh-HHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029215 54 VNLGLWDTAGQEDYNR-L----------RPLSY-RGADVFILAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL 120 (197)
Q Consensus 54 ~~l~i~D~~G~~~~~~-~----------~~~~~-~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 120 (197)
+.+.++|+||...... + ....+ ..++.+++|+|++... ..... . .+.+. .+ ..-+|+||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a-~----~~~~~-~~-i~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA-K----IFKEA-VN-VTGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH-H----HHHHH-SC-CCEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH-H----HHHhc-CC-CCEEEEeCC
Confidence 4577999999532211 0 11112 3478899999987442 22222 2 22222 12 234667999
Q ss_pred CccCCcccccCCCCCccccHHHHHHHHHHhCCCeEEEecc
Q 029215 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIECSS 160 (197)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (197)
|.... ...+..+....+. |+..++.
T Consensus 260 D~~~~--------------gG~~l~~~~~~~~-Pi~~i~~ 284 (306)
T 1vma_A 260 DGTAK--------------GGITLAIARELGI-PIKFIGV 284 (306)
T ss_dssp GGCSC--------------TTHHHHHHHHHCC-CEEEEEC
T ss_pred CCccc--------------hHHHHHHHHHHCC-CEEEEeC
Confidence 97532 2346778888887 6666544
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.63 E-value=0.0062 Score=46.37 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.62 E-value=0.0081 Score=42.00 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 029215 9 CVTVGDGAVGKTCMLISYT 27 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~ 27 (197)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999997764
No 469
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.62 E-value=0.0042 Score=50.56 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999976654
No 470
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0069 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+--+++.||||+|||+|++.+-.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998865
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.61 E-value=0.011 Score=42.09 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=20.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhh
Q 029215 3 ASRFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 3 ~~~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..+..-|++.|.+|+||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999977753
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0078 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
++|+|+.|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999988764
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.53 E-value=0.011 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..-|+|+|++|||||+|...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578999999999999988864
No 474
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.0083 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987764
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.52 E-value=0.0064 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+...|+|.|.+||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987764
No 476
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.51 E-value=0.008 Score=45.86 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988765
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.51 E-value=0.0058 Score=49.83 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 029215 8 KCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~ 28 (197)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999987755
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.51 E-value=0.0034 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999988865
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.50 E-value=0.0076 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999977754
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.49 E-value=0.0092 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999977754
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.0084 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.+-.|++.||||+|||+|++.+-.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998865
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.46 E-value=0.009 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-|+|+|++|||||||...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999988653
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.46 E-value=0.0079 Score=45.78 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.45 E-value=0.0086 Score=42.09 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987754
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.44 E-value=0.01 Score=50.98 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCCC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSNTF 31 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~~~ 31 (197)
.++|+|++|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986544
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.43 E-value=0.0088 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
.-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999988653
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.43 E-value=0.0095 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 029215 8 KCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 8 ~i~v~G~~~~GKstli~~l~~~ 29 (197)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.43 E-value=0.0094 Score=43.28 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhhC
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
...+++.|++|+|||++++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 356899999999999999988764
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.42 E-value=0.011 Score=40.20 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhhCC
Q 029215 7 IKCVTVGDGAVGKTCMLISYTSNT 30 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~~~ 30 (197)
.-+++.|++|+||||+.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999888743
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.41 E-value=0.011 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988865
No 491
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.013 Score=41.59 Aligned_cols=25 Identities=16% Similarity=-0.071 Sum_probs=19.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhhC
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~~ 29 (197)
+.+=|+..|+++.|||+|++++++.
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CceEEEecCcccccHHHHHHHHhcc
Confidence 3444455599999999999999886
No 492
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.011 Score=46.30 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.+-.|++.||||+|||+|++.+-.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.39 E-value=0.0092 Score=45.48 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.+++.|++|+|||+|++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999988865
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.37 E-value=0.011 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.36 E-value=0.0098 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
.-.+++.|++|+|||++++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 496
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.34 E-value=0.025 Score=42.31 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 029215 9 CVTVGDGAVGKTCMLISYTSN 29 (197)
Q Consensus 9 i~v~G~~~~GKstli~~l~~~ 29 (197)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455666999999999988653
No 497
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.01 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
+-.+++.||||+|||.|++.+-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 45699999999999999998865
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.32 E-value=0.01 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhh
Q 029215 6 FIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 6 ~~~i~v~G~~~~GKstli~~l~~ 28 (197)
...+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 499
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.0092 Score=44.78 Aligned_cols=24 Identities=4% Similarity=-0.147 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhh
Q 029215 5 RFIKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 5 ~~~~i~v~G~~~~GKstli~~l~~ 28 (197)
..-.++|.|+||+|||++++.+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999988764
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.30 E-value=0.011 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhh
Q 029215 7 IKCVTVGDGAVGKTCMLISYTS 28 (197)
Q Consensus 7 ~~i~v~G~~~~GKstli~~l~~ 28 (197)
-.++++|++|+|||||++.+..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988754
Done!