BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029216
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 8 IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLS--YV 65
I +E+G FWRGN+ ++ P A+ F K K G + H Y +
Sbjct: 60 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAGNLA 117
Query: 66 SGALAGCAATVGSYPFDLLRTILASQ----GEPKVYPTMRSAFVDIISTRGFRGLYAGLS 121
SG AG + YP D RT LA+ + + + + I + G RGLY G +
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 122 PTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCA 181
++ II Y FG YDT K D N+ ++ A
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLPD--------------PKNVHIIVSWMIAQTVTAVA 223
Query: 182 KLVCHPLDVVKKR 194
LV +P D V++R
Sbjct: 224 GLVSYPFDTVRRR 236
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 8 IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSG 67
IF+ +GL G ++G ++ ++ Y A F V K HI +S ++
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV--HIIVSWMIAQTVT 220
Query: 68 ALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVD 106
A+AG SYPFD +R + Q K M + VD
Sbjct: 221 AVAGLV----SYPFDTVRRRMMMQSGRKGADIMYTGTVD 255
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 20/191 (10%)
Query: 8 IFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSG 67
+ R EG + G V L M + +++ + +K F +K H + + L ++G
Sbjct: 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQF---YTKGSEHAGIGSRL--LAG 111
Query: 68 ALAGCAATVGSYPFDLLRTILASQ---GEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTL 124
+ G A + P D+++ +Q G + Y + A+ I G RGL+ G SP +
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV 171
Query: 125 VEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLV 184
+ TYD K + N + ++L F AG C ++
Sbjct: 172 ARNAIVNCAELVTYDLIKDTLLKANLM----------TDDLPCH--FTSAFGAGFCTTVI 219
Query: 185 CHPLDVVKKRF 195
P+DVVK R+
Sbjct: 220 ASPVDVVKTRY 230
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 62 LSYVSGALAGCAATVGSYPFDLLRTILASQGEPK---------VYPTMRSAFVDIISTRG 112
+ ++ A C A + ++P D + L QGE + Y + + ++ T G
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 113 FRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFV 172
R LY GL L + +A ++ G YD+ K++ + + G + L +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-------TKGSEHAGIGSRL------L 109
Query: 173 CGLAAGTCAKLVCHPLDVVKKRFQ 196
G G A V P DVVK RFQ
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQ 133
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 3 QATKDIFREEGLWGFWRGNVPALLM--------VMPYTAIQFTVLHKLKTFAAGSSKAEN 54
+A K I REEG+ G W+G P + ++ Y I+ T+L N
Sbjct: 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK------------AN 196
Query: 55 HINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFVDIISTRGFR 114
+ + S AG TV + P D+++T + + + A ++ G R
Sbjct: 197 LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALT-MLRKEGPR 255
Query: 115 GLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTM 146
Y G P+ + + + + F TY+ KR M
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 95 KVYPTMRSAFVDIISTRGFRGLY---AGLSPTLVEIIP 129
KVYP + S +D + +G++G+ GL T +IIP
Sbjct: 311 KVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIP 348
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 91 QGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEII-PYAGLQFGTYDTFKRWTMDWN 149
G ++Y + A++ I+ G G G++ L +I+ P + T F W+++ N
Sbjct: 106 NGLKQIYEGIEDAYILIL---GAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN 162
Query: 150 RIRSSNTSSTGADNNLSSFQLFVCGLAAG 178
+I S+ A+++L F + + AG
Sbjct: 163 KINLSH-----AESHLDEFDIIINTTPAG 186
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 7 DIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVS 66
D+F +GL+ R VP+ Y A++ K + G SKA HIN + + VS
Sbjct: 22 DLFTSKGLF---RAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVS 78
Query: 67 GAL 69
L
Sbjct: 79 KKL 81
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 7 DIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVS 66
D+F +GL+ R VP+ Y A++ K + G SKA HIN + + VS
Sbjct: 23 DLFTSKGLF---RAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVS 79
Query: 67 GAL 69
L
Sbjct: 80 KKL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,574,631
Number of Sequences: 62578
Number of extensions: 207538
Number of successful extensions: 582
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)