Query 029216
Match_columns 197
No_of_seqs 151 out of 1389
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:12:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4.1E-42 1.4E-46 262.9 18.3 182 2-197 54-239 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.4E-41 4.7E-46 260.6 17.3 179 2-197 51-232 (303)
3 2lck_A Mitochondrial uncouplin 100.0 8.5E-33 2.9E-37 211.8 11.5 144 2-150 148-291 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.2E-31 1.4E-35 201.9 12.5 136 2-144 157-296 (297)
5 1y9i_A Low temperature require 30.5 85 0.0029 21.5 4.4 49 129-184 111-159 (178)
6 2acm_A Mucin-1; auto-catalytic 25.0 12 0.00041 20.5 -0.4 19 99-117 41-59 (66)
7 3f2e_A SIRV coat protein; four 24.8 1.1E+02 0.0037 17.7 5.9 55 95-149 6-67 (100)
8 2l5r_A Antimicrobial peptide a 23.6 34 0.0012 14.6 1.0 21 5-26 2-22 (26)
9 3tgu_G UQCRQ, mitochondrial ub 19.8 1.5E+02 0.005 17.4 3.9 37 112-148 33-69 (81)
10 1rfz_A Hypothetical protein AP 18.5 1.7E+02 0.0057 19.8 4.0 48 129-183 113-160 (168)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.1e-42 Score=262.92 Aligned_cols=182 Identities=27% Similarity=0.456 Sum_probs=157.5
Q ss_pred hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (197)
Q Consensus 2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl 81 (197)
++++++++++||++|||||+.+++++.++.++++|.+||.+++.+......+..........+++|++||+++.++++|+
T Consensus 54 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pl 133 (297)
T 1okc_A 54 IDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 133 (297)
T ss_dssp HHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 58899999999999999999999999999999999999999995433211111112345678999999999999999999
Q ss_pred HHHHHHHHhcCC----CCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhhccCCCC
Q 029216 82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTS 157 (197)
Q Consensus 82 d~vk~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (197)
|++|+|+|++.. ..+|+++++++++++++||++|||||+.+++++.+++++++|.+||.+|+.+.+.
T Consensus 134 d~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------- 204 (297)
T 1okc_A 134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------- 204 (297)
T ss_dssp HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---------
T ss_pred HHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---------
Confidence 999999999743 3568999999999999999999999999999999999999999999999966432
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhhchHHHHHhhhcC
Q 029216 158 STGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV 197 (197)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvvk~rmQ~ 197 (197)
.+.+....++++++||++++++++|+||||+|||+
T Consensus 205 -----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 205 -----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp -----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 12456678899999999999999999999999995
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=260.65 Aligned_cols=179 Identities=23% Similarity=0.371 Sum_probs=160.8
Q ss_pred hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (197)
Q Consensus 2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl 81 (197)
++++++|+++||++|||||+.+++++.+++++++|.+||.+++.+.+... ..+....+++|++||+++.++++|+
T Consensus 51 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pl 125 (303)
T 2lck_A 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPT 125 (303)
T ss_dssp HHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcH
Confidence 57899999999999999999999999999999999999999999875411 3456788999999999999999999
Q ss_pred HHHHHHHHhcCC---CCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhhccCCCCC
Q 029216 82 DLLRTILASQGE---PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSS 158 (197)
Q Consensus 82 d~vk~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
|++|+|+|++.. ...|++.++++++++++||++|||||+.+++++.+++++++|.+||.+|+.+.+...
T Consensus 126 d~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-------- 197 (303)
T 2lck_A 126 DVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-------- 197 (303)
T ss_dssp HHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--------
T ss_pred HHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------
Confidence 999999999753 357899999999999999999999999999999999999999999999998765321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhchHHHHHhhhcC
Q 029216 159 TGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQV 197 (197)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvvk~rmQ~ 197 (197)
...+....+++|++||++++++++|+||||+|||+
T Consensus 198 ----~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~ 232 (303)
T 2lck_A 198 ----MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMN 232 (303)
T ss_dssp ----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 23456678999999999999999999999999995
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.5e-33 Score=211.80 Aligned_cols=144 Identities=22% Similarity=0.352 Sum_probs=130.4
Q ss_pred hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (197)
Q Consensus 2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl 81 (197)
++++++|+++||++|||||+.+++++.++.++++|.+||.+++.+..... ...+....+++|++||++++++++|+
T Consensus 148 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~----~~~~~~~~~~~g~~ag~~~~~~~~P~ 223 (303)
T 2lck_A 148 VEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL----MTDDLPCHFTSAFGAGFCTTVIASPV 223 (303)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS----CCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCchHHHHHHHHHHHHHHHHHcCHH
Confidence 68999999999999999999999999999999999999999998875421 13345678999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 029216 82 DLLRTILASQGEPKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNR 150 (197)
Q Consensus 82 d~vk~r~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (197)
|++|+|+|++.. ..|+++++|+++++++||++|||||+.|++++.++.++++|.+||.+|+.+....+
T Consensus 224 dvvktrlq~~~~-~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 224 DVVKTRYMNSAL-GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp HHHHHHHTTCCS-SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhccc-cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999754 46999999999999999999999999999999999999999999999998776543
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.97 E-value=4.2e-31 Score=201.88 Aligned_cols=136 Identities=21% Similarity=0.342 Sum_probs=120.0
Q ss_pred hHHHHHHHHhcChhhhccchhhhhhhhchhhHHHHHHHHHHHHHhccCcccccccChhhHHHHHHHHHHHHHHHHhhccH
Q 029216 2 FQATKDIFREEGLWGFWRGNVPALLMVMPYTAIQFTVLHKLKTFAAGSSKAENHINLSAYLSYVSGALAGCAATVGSYPF 81 (197)
Q Consensus 2 ~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl 81 (197)
++++++|+++||++|||||+.+++++.++.++++|.+||.+++.+.+. ...+....+++|++||++++++++|+
T Consensus 157 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------~~~~~~~~~~~g~~ag~~a~~~t~P~ 230 (297)
T 1okc_A 157 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------KNVHIIVSWMIAQTVTAVAGLVSYPF 230 (297)
T ss_dssp HHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------GCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccHHHHHHHHHHHHHHHHHhcChH
Confidence 689999999999999999999999999999999999999999977543 13345677899999999999999999
Q ss_pred HHHHHHHHhcCC----CCCCCcHHHHHHHHHHhhchhhhccchhhhHHHHhhhhhHHHHHHHHHHHH
Q 029216 82 DLLRTILASQGE----PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRW 144 (197)
Q Consensus 82 d~vk~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (197)
|+||+|+|++.. ...|+++++|+++++++||++|||||+.|++++. +.+++.|.+||.+|+.
T Consensus 231 dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 231 DTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 999999998743 2368999999999999999999999999999995 5789999999998865
No 5
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=30.51 E-value=85 Score=21.46 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Q 029216 129 PYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLV 184 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 184 (197)
....+.|..||..|.+...+.+... .+.-.....++++|.+|++++.++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~-------~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHD-------GIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCC-------SSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhccc-------CCCCcchHHHHHHHHHHHHHHHHH
Confidence 4556677778887766555432111 012245677788888888876543
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.03 E-value=12 Score=20.49 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHhhchhhhc
Q 029216 99 TMRSAFVDIISTRGFRGLY 117 (197)
Q Consensus 99 ~~~~~~~~i~~~~G~~gly 117 (197)
++.+.+.+||++++..|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 6788888999998887764
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=24.76 E-value=1.1e+02 Score=17.69 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCCCcHHHHHHHHHHhhch----hhhccchhhhHHHHhh---hhhHHHHHHHHHHHHHhhhh
Q 029216 95 KVYPTMRSAFVDIISTRGF----RGLYAGLSPTLVEIIP---YAGLQFGTYDTFKRWTMDWN 149 (197)
Q Consensus 95 ~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 149 (197)
.+++++-+-+..++.+.|+ +++|.|++..+.|..- ..-...-..+-+|.++....
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaralnr~g~gpalvnminglkayyisaf 67 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAF 67 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHhcCCchHHHHHHhhhhHhhhHhh
Confidence 4566666667777777775 6789999988766421 11122233455666666553
No 8
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=23.62 E-value=34 Score=14.59 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=13.2
Q ss_pred HHHHHHhcChhhhccchhhhhh
Q 029216 5 TKDIFREEGLWGFWRGNVPALL 26 (197)
Q Consensus 5 ~~~i~~~~G~~gly~G~~~~~~ 26 (197)
+++|++ .|+.+|-+|+.+.+.
T Consensus 2 lkeifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 2 LKEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhHHHHHHHHHHHHh
Confidence 455554 377777777766553
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.79 E-value=1.5e+02 Score=17.35 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=26.6
Q ss_pred chhhhccchhhhHHHHhhhhhHHHHHHHHHHHHHhhh
Q 029216 112 GFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDW 148 (197)
Q Consensus 112 G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (197)
|+-..+|-+...++..+|..++...+|++.++.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777888888999999999888765443
No 10
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=18.47 E-value=1.7e+02 Score=19.81 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 029216 129 PYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKL 183 (197)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 183 (197)
....+.|..||..|.+...+.+.... +.-.....++++|..|++++.+
T Consensus 113 ~~gf~~Fr~fDi~KPgpI~~ld~~~~-------gg~gimlDDivAgi~A~~~~~l 160 (168)
T 1rfz_A 113 SIGFTNYGYIDKQKPGILQYLNDKST-------GKCNTFLDDIVGAIAAAASSRL 160 (168)
T ss_dssp TTHHHHHHHHHHHCCTHHHHHHCSSS-------SCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHhhcccC-------CCCcchHHHHHHHHHHHHHHHH
Confidence 34566677777777665544321111 1224567778888888877644
Done!