BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029217
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
Length = 251
Score = 362 bits (928), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/191 (93%), Positives = 186/191 (97%)
Query: 1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVSPDLSVLN
Sbjct: 53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 112
Query: 61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 120
LVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK
Sbjct: 113 LVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGK 172
Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
SKAPKIQRLVTPLTLQRKRARIAEKK+R+AKAK+EAAEYQKLLA+RLKEQR+RRSESL
Sbjct: 173 TCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESL 232
Query: 181 AKKRSRLSAAS 191
AKKRSRLSAA+
Sbjct: 233 AKKRSRLSAAA 243
>sp|P51430|RS62_ARATH 40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1
SV=3
Length = 249
Score = 353 bits (905), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 176/197 (89%), Positives = 186/197 (94%)
Query: 1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLN
Sbjct: 53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112
Query: 61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 120
LVIVKKG DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GK
Sbjct: 113 LVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172
Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
KVSKAPKIQRLVTPLTLQRKRARIA+KK+RIAKA ++AA+YQKLLA+RLKEQR+RRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232
Query: 181 AKKRSRLSAASKPSIAA 197
AKKRSRLS+A +AA
Sbjct: 233 AKKRSRLSSAPAKPVAA 249
>sp|O48549|RS61_ARATH 40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1
SV=2
Length = 250
Score = 332 bits (852), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 175/197 (88%), Positives = 188/197 (95%), Gaps = 1/197 (0%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLNL
Sbjct: 54 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE 173
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
VSKAPKIQRLVTPLTLQRKRARIA+KK++IAKA ++AA+YQKLLA+RLKEQR+RRSESLA
Sbjct: 174 VSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLA 233
Query: 182 KKRSRL-SAASKPSIAA 197
KKRSRL SAA+KPS+ A
Sbjct: 234 KKRSRLSSAAAKPSVTA 250
>sp|P29345|RS6_TOBAC 40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6
PE=2 SV=2
Length = 199
Score = 323 bits (827), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 169/197 (85%), Positives = 180/197 (91%), Gaps = 5/197 (2%)
Query: 1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
MGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVSPDLSVLN
Sbjct: 8 MGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 67
Query: 61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 120
LVIVKKGE+DLPGLTDTEKPRMRGP+ + L+ KEDDVRKYVNT FTTK
Sbjct: 68 LVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNTTAE-FTTKW-- 122
Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
K SKAPKIQRLVTPLTLQRKRARIA+KK+RIAKAK+EAAEYQKLLA+RLKEQRE+RSESL
Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182
Query: 181 AKKRSRLSAASKPSIAA 197
AKKRSRLSAASKPSIAA
Sbjct: 183 AKKRSRLSAASKPSIAA 199
>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1
Length = 249
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1
Length = 249
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1
Length = 249
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1
Length = 249
Score = 234 bits (597), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|Q5E995|RS6_BOVIN 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1
Length = 249
Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 145/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|P47838|RS6_CHICK 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1
Length = 249
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EAA+Y KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|Q90YR8|RS6_ICTPU 40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1
Length = 249
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 147/188 (78%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTNGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VI++KGE D+PGLTD+ PR GPKRAS+IRKLFNLSKEDDVR+YV RR T + K
Sbjct: 112 VIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA K+QR K K EAAEY KLLA RLKE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|Q9YGF2|RS6_ONCMY 40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1
Length = 249
Score = 229 bits (584), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 146/188 (77%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCI +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLAKGHSCYRP--RRTGERKRKSVRGCIGDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VI+KKGE D+PGLTD+ PR GPKRASKIRKLFNL+KEDDVR+YV RR T + K
Sbjct: 112 VIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAP+IQRLVTP LQ KR RIA KKQR K K EA+EY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|P39017|RS6_XENLA 40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1
Length = 249
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 144/188 (76%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIV+KGE D+PGLTD PR GPKRAS+IRKLFNLSKEDDVR+YV R+ + K
Sbjct: 112 VIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKP 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQ KR RIA KKQR K K EA+EY KLLA R KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIA 229
Query: 182 KKRSRLSA 189
K+R RLS+
Sbjct: 230 KRR-RLSS 236
>sp|Q9BMX5|RS6_APLCA 40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1
Length = 247
Score = 223 bits (567), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 139/178 (78%), Gaps = 5/178 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLLL + C+R RR GER+RKSVRGCIV +LSVL+L
Sbjct: 54 GGNDKQGFPMKQGVLTATRVRLLLDKNHSCYRP--RRTGERKRKSVRGCIVDSNLSVLSL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VI+KKGE D+PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV RR + GKK
Sbjct: 112 VIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKK 169
Query: 122 V-SKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSE 178
SKAPKIQRLVTP+ LQRKRAR+A KK+R+ K + + AEY KLLA R+KE +ER+ E
Sbjct: 170 AKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME 227
>sp|Q2PQM1|RS6_GLOMM 40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6
PE=2 SV=1
Length = 248
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 136/179 (75%), Gaps = 5/179 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLLL +G C+R RR GER+RKSVRGCIV ++SVL L
Sbjct: 54 GGNDKQGFPMKQGVLTHDRVRLLLKKGHSCYRP--RRTGERKRKSVRGCIVDANMSVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE D+PGLTDT PR GPKRASKIRKL+NLSK DDVR YV RR K KK
Sbjct: 112 VIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKK 169
Query: 122 -VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSES 179
+SKAPKIQRL+TP+ LQRKR RIA KK+R A +K AA+Y KLLA R KE + +R E+
Sbjct: 170 AISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREEA 228
>sp|P29327|RS6_DROME 40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1
SV=1
Length = 248
Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 135/179 (75%), Gaps = 5/179 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV ++SVL L
Sbjct: 54 GGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRP--RRTGERKRKSVRGCIVDANMSVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
V++KKGE D+PGLTDT PR GPKRASKIRKL+NLSKEDDVR++V RR K KK
Sbjct: 112 VVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKK 169
Query: 122 -VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSES 179
SKAPKIQRL+TP+ LQRK RIA KK+R +K +A+Y KLL R KE + +R E+
Sbjct: 170 ATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEA 228
>sp|O01727|RS6_BRAFL 40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3
SV=1
Length = 244
Score = 209 bits (532), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 137/185 (74%), Gaps = 9/185 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT GRVRLLL +G C+R RR GER+RKSVRGCIV +LSVLNL
Sbjct: 54 GGNDKQGFPMKQGVLTNGRVRLLLGKGHSCYRP--RRTGERKRKSVRGCIVDSNLSVLNL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VI+KKGE D+PGLTDT PR GPKRA +IRKLFNL+KEDDVR+YV RR K GKK
Sbjct: 112 VILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKK 169
Query: 122 VS-KAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
K PKIQRL+TP LQRKR A K++R AK + E A Y KLLA R KE+R E+
Sbjct: 170 QKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER----EAH 225
Query: 181 AKKRS 185
AK+RS
Sbjct: 226 AKRRS 230
>sp|P05752|RS6A_SCHPO 40S ribosomal protein S6-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps6a PE=1 SV=2
Length = 239
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/187 (59%), Positives = 136/187 (72%), Gaps = 4/187 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPM QGVL P RVRLLL G PC+R RRDGER+RKSVRGCIV DL+VL L
Sbjct: 54 GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRP--RRDGERKRKSVRGCIVGQDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
I+K+GE D+PGLTD P+ GPKRASKIR+ FNLSKEDDVR++V R K GKK
Sbjct: 112 AIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKK 170
Query: 122 -VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
+KAPKIQRLVTP TLQ KR R A K+++ K + EAAE+ +L+A R+ E +++R
Sbjct: 171 PYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVK 230
Query: 181 AKKRSRL 187
A++ S L
Sbjct: 231 ARRASSL 237
>sp|Q9C0Z7|RS6B_SCHPO 40S ribosomal protein S6-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps6b PE=1 SV=1
Length = 239
Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/187 (59%), Positives = 136/187 (72%), Gaps = 4/187 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPM QGVL P RVRLLL G PC+R RRDGER+RKSVRGCIV DL+VL L
Sbjct: 54 GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRP--RRDGERKRKSVRGCIVGQDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
IVK+GE D+PGLTD P+ GPKRASKIR+ FNLSKEDDVR++V R K GKK
Sbjct: 112 AIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKK 170
Query: 122 -VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
+KAPKIQRLVTP TLQ KR R A K+++ K + EAAE+ +L+A R+ E ++++
Sbjct: 171 PYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVK 230
Query: 181 AKKRSRL 187
A++ S +
Sbjct: 231 ARRASSM 237
>sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1
Length = 253
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 123/197 (62%), Positives = 144/197 (73%), Gaps = 8/197 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSVL L
Sbjct: 54 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIV+KGE ++PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV +R K GK+
Sbjct: 112 VIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKE 169
Query: 122 VS----KAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRS 177
+ KAPKIQRLVTP+ LQR+R R+A KK+R+AK K +Y KLLA R KE + RR
Sbjct: 170 NAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQ 229
Query: 178 ESLAKKRSRLSAASKPS 194
E L ++RS SK S
Sbjct: 230 EELKRRRSASMRDSKSS 246
>sp|Q94624|RS6_MANSE 40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1
Length = 253
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 145/197 (73%), Gaps = 8/197 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSVL L
Sbjct: 54 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIV+KGE ++PGLTD PR GPKRASKIRKLFNLSKEDDVR+YV + K GK+
Sbjct: 112 VIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKE 169
Query: 122 VS----KAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRS 177
+ KAPKIQRLVTP+ LQR+R R+A KK+R+AK K+ A+Y KLLA R KE + RR
Sbjct: 170 NAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQ 229
Query: 178 ESLAKKRSRLSAASKPS 194
E + ++RS SK S
Sbjct: 230 EEIKRRRSASMRDSKSS 246
>sp|Q9U761|RS6_AEDAE 40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2
Length = 346
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 125/165 (75%), Gaps = 5/165 (3%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLLL +G C+R RR GER+RKSVRGCIV +LS L L
Sbjct: 54 GGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRP--RRTGERKRKSVRGCIVDQNLSALAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
++VKKGE D+PGLTDT PR GPKRAS IRKL+NL+KEDDVR++V +R K GKK
Sbjct: 112 IVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKK 169
Query: 122 V-SKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLL 165
+KAPKIQRL+TP+ LQRKR R+A KK+R+ K AEY K+L
Sbjct: 170 ARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKIL 214
>sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPS6 PE=3 SV=1
Length = 236
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 134/188 (71%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGV+ P RV+LLL +G C+R RR GER+RKSVRGCIV+ DL+VL L
Sbjct: 54 GGNDKQGFPMKQGVMHPTRVKLLLAKGHSCYRP--RRTGERKRKSVRGCIVAQDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
+VK+G+ D+ GLTDT P+ GPKRA+ IRK F L+KEDDVR++V R K KK
Sbjct: 112 SVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFVV---RREVVKGDKK 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP TLQRKRA A+K + + + AAEY +LLA RL E++ R+E
Sbjct: 169 YTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|Q9U762|RS6_AEDAL 40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1
Length = 349
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 124/165 (75%), Gaps = 5/165 (3%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVLT RVRLLL +G C+R RR GER+RKSVRGCIV +LS L L
Sbjct: 54 GGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRP--RRTGERKRKSVRGCIVDQNLSALAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
++VKKGE D+PGLTDT R GPKRAS IRKL+NL+KEDDVR+YV +R K GKK
Sbjct: 112 IVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKK 169
Query: 122 V-SKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLL 165
+KAPKIQRL+TP+ LQRKR R+A KK+R+ K AEY K+L
Sbjct: 170 PRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKIL 214
>sp|Q6C169|RS6_YARLI 40S ribosomal protein S6 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=RPS6 PE=3 SV=1
Length = 242
Score = 191 bits (485), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 127/169 (75%), Gaps = 6/169 (3%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGV+ P RVRLLL + + C+R RR GER+RKSVRGCIVS DLSVL++
Sbjct: 54 GGNDKQGFPMKQGVMHPTRVRLLLSKDSSCYRS--RRAGERKRKSVRGCIVSSDLSVLSV 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVK+G+ D+ GLT PR GPKRA+ IRKLF LSKEDDVR+YV RR TTKSGK
Sbjct: 112 VIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKT 169
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQR-IAKAKAEAAEYQKLLATRL 169
+KAPKIQRL+TP L K A++ EKK + I +K AAEY +LLA R+
Sbjct: 170 YTKAPKIQRLITPRRLAHK-AQLREKKVKAIQASKDAAAEYAQLLAKRV 217
>sp|Q9NEN6|RS6_CAEEL 40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1
SV=1
Length = 246
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 127/173 (73%), Gaps = 4/173 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQG+LT GRVRLLL +G C+R R++GER+RKSVRGCIV ++S L+L
Sbjct: 54 GGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRE--RKNGERKRKSVRGCIVDANMSALSL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKG+ ++ GLTD+ PR GPKRASKIRKLFNL+K DDV KYV T+ +TF K
Sbjct: 112 VIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKT 171
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRE 174
+ APKIQRL+TP + RK+ + +K+ + K + +AA Y KLLA KE+ +
Sbjct: 172 I--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHD 222
>sp|P0CX38|RS6B_YEAST 40S ribosomal protein S6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS6B PE=1 SV=1
Length = 236
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 131/188 (69%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P R++LLL + C+R RRDGER+RKSVRG IV PDL+VL L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRP--RRDGERKRKSVRGAIVGPDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE +L GLTDT P+ GPKRA+ IRK F LSKEDDVR +V RR TK K
Sbjct: 112 VIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV--IRRE-VTKGEKT 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQRKR + A K + + AAEY +LLA RL E++ ++E
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|P0CX37|RS6A_YEAST 40S ribosomal protein S6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS6A PE=1 SV=1
Length = 236
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 131/188 (69%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P R++LLL + C+R RRDGER+RKSVRG IV PDL+VL L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRP--RRDGERKRKSVRGAIVGPDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE +L GLTDT P+ GPKRA+ IRK F LSKEDDVR +V RR TK K
Sbjct: 112 VIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV--IRRE-VTKGEKT 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQRKR + A K + + AAEY +LLA RL E++ ++E
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|Q6FJH3|RS6_CANGA 40S ribosomal protein S6 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS6A
PE=3 SV=1
Length = 236
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 130/188 (69%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P RV+LLL +G C+R RR GER+RKSVRG IV PDL+VL+L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRVKLLLAKGHSCYRP--RRSGERKRKSVRGAIVGPDLAVLSL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKGE +L G+TD P+ GPKRA+ IRK F L+KEDDVR +V R TK K
Sbjct: 112 VIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFVI---RREVTKGEKT 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQRKR + K + + AAEY +LLA RL E++ ++E+
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|P41798|RS6_KLUMA 40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3
SV=1
Length = 235
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 129/183 (70%), Gaps = 9/183 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P RV+LL+ +GT C+R RR+GER+RKSVRG IV PDL+VL L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRVKLLMAKGTSCYRP--RRNGERKRKSVRGAIVGPDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
VIVKKG+ ++ G+T+ P+ GPKRA+ IRK F L+KEDDVR YV R TK K
Sbjct: 112 VIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYVI---RREVTKGEKT 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQ----RERRS 177
+KAPKIQRLVTP LQRKR + A K + + AAEY +LLA RL E+ R+RR+
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKAEVRKRRA 228
Query: 178 ESL 180
SL
Sbjct: 229 SSL 231
>sp|Q6CM04|RS6_KLULA 40S ribosomal protein S6 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPS6 PE=3 SV=1
Length = 236
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/188 (55%), Positives = 130/188 (69%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P RV+LLL +G C+R RR+GER+RKSVRG IV PDL+VL L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRVKLLLAKGHSCYRP--RRNGERKRKSVRGAIVGPDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
+I KKGE ++ G+T+ P+ GPKRA+ IRK F L+KEDDVR YV RR TK K
Sbjct: 112 IITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV--IRRE-VTKGDKS 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQRKR + + K + + AAEY +LLA RL E++ ++E
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|Q74ZK3|RS6_ASHGO 40S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS6 PE=3 SV=1
Length = 236
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 130/188 (69%), Gaps = 5/188 (2%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DKQGFPMKQGVL P RV+LL+ +GT C+R RR+GER+RKSVRG IV PDL+VL L
Sbjct: 54 GGNDKQGFPMKQGVLLPTRVKLLMAKGTSCYRP--RRNGERKRKSVRGAIVGPDLAVLAL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
+I KKG+ ++ G+T+ P+ GPKRA+ IRK F L+K+DDVR +V RR K K
Sbjct: 112 IITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV--IRRE-VVKGDKT 168
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
+KAPKIQRLVTP LQRKR + A K + + AAEY +LLA RL E++ ++E
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERK 228
Query: 182 KKRSRLSA 189
++ S L A
Sbjct: 229 RRASSLKA 236
>sp|Q54UU3|RS6_DICDI 40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1
SV=1
Length = 236
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 121/174 (69%), Gaps = 3/174 (1%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D +GFPM QGV P RVRLLL + CF+ RDGER+RKSVRGCIV+ D++ L L
Sbjct: 54 GGNDTEGFPMMQGVGAPTRVRLLLDGRSGCFKPS--RDGERKRKSVRGCIVAEDIASLQL 111
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
+IVKKG+ ++PGLTD P +GPKRAS IRKLF LSK++DVR +V R T K
Sbjct: 112 IIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKA 170
Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRER 175
SKAPKIQRLVTP T+ R++A A+K R KA EAAEY KL+A R + + +R
Sbjct: 171 KSKAPKIQRLVTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKR 224
>sp|Q9NE83|RS6_LEIMA 40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1
Length = 249
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/200 (46%), Positives = 124/200 (62%), Gaps = 13/200 (6%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGT---PCFRGYGRRDGERRRKSVRGCIVSPDLSV 58
GG DK GFPM GVL RV LL+ RG FRGY GERRRK+VRGC+++ D+++
Sbjct: 55 GGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGY---QGERRRKNVRGCVLASDIAL 111
Query: 59 LNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKS 118
+N+ I K G+ + G+TDT PR GPKRASKIRKLFNLS+ +DVRKYV KS
Sbjct: 112 VNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVR---RRVVKS 168
Query: 119 GKKVS-KAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRS 177
GKK KAPKIQRL+TP R+ + + ++ + AE EY +L+A+ + R+R
Sbjct: 169 GKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR-- 226
Query: 178 ESLAKKRSRLSAASKPSIAA 197
+KK +R A + +AA
Sbjct: 227 -DHSKKHTRKVHAQRAEVAA 245
>sp|O44012|RS6_LEIIN 40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1
Length = 249
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 124/200 (62%), Gaps = 13/200 (6%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGT---PCFRGYGRRDGERRRKSVRGCIVSPDLSV 58
GG DK GFPM GVL RV LL+ RG FRGY GERRRK+VRGC+++ D+++
Sbjct: 55 GGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGY---QGERRRKNVRGCVLASDIAL 111
Query: 59 LNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKS 118
+N+ I K G+ + G+TDT PR GPKRASKIRKLFNLS+ +DVRKYV KS
Sbjct: 112 VNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVR---RRVVKS 168
Query: 119 GKKVS-KAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRS 177
GKK KAPKIQRL+TP R+ + + ++ + AE EY +L+A+ + R+R
Sbjct: 169 GKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR-- 226
Query: 178 ESLAKKRSRLSAASKPSIAA 197
+KK ++ A + +AA
Sbjct: 227 -DHSKKHTQKVHAQRAEVAA 245
>sp|Q8SRY0|RS6_ENCCU 40S ribosomal protein S6 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS6 PE=3 SV=1
Length = 203
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D QGFPM G LT RVR LL +G +R + RRRKSVRG IVS ++ VLNL
Sbjct: 39 GGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKG--VRRRKSVRGSIVSEEICVLNL 96
Query: 62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK 121
+I++ GE ++ GLT+ P++ K+RK+F + E+ K V Y R
Sbjct: 97 IILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDD 153
Query: 122 VSKAPKIQR-------------LVTPLTLQRKRARIAEKKQRIAK 153
K PKI+ + + L+RKR E+K+ + K
Sbjct: 154 PKKIPKIRHNGKRMKREQERREQIMKIRLERKRILEEERKEYLEK 198
>sp|Q8TVE6|RS6E_METKA 30S ribosomal protein S6e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps6e PE=3 SV=1
Length = 130
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ + P RVRLLL G P FR R GERRRK+VRG +S D+ +N
Sbjct: 54 GGTDKDGFPMRPDIHGPVRVRLLLS-GPPGFRP--ERKGERRRKTVRGNTISEDIVQVNT 110
Query: 62 VIVKKGE 68
VIV+ G+
Sbjct: 111 VIVEYGD 117
>sp|C5A7C4|RS6E_THEGJ 30S ribosomal protein S6e OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps6e PE=3 SV=1
Length = 125
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ V P RVR+LL RG P FR + GERR+K+VRG +SP++ +N
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVRILLSRG-PGFR--PKEKGERRKKTVRGNTISPEIVQINA 121
Query: 62 VIV 64
V+V
Sbjct: 122 VLV 124
>sp|O26360|RS6E_METTH 30S ribosomal protein S6e OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps6e PE=3 SV=1
Length = 126
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYG-RRDGERRRKSVRGCIVSPDLSVLN 60
GG DK GFPMK+ V R+R L+ G GY RRDGERRRK+ RG +S D+ +N
Sbjct: 51 GGSDKNGFPMKKTVPGARRIRSLVSGGV----GYKPRRDGERRRKTFRGNTISDDIVQIN 106
Query: 61 LVIVKKGEHDL 71
V+++KGE L
Sbjct: 107 TVVIEKGEKPL 117
>sp|C6A2D7|RS6E_THESM 30S ribosomal protein S6e OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rps6e PE=3 SV=1
Length = 126
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ V P RV++L+ RG P FR R GERR+K+VRG +SP+++ +N+
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVKILISRG-PGFRPQER--GERRKKTVRGNTISPEIAQINV 121
Query: 62 VIV 64
IV
Sbjct: 122 KIV 124
>sp|Q5JDK8|RS6E_PYRKO 30S ribosomal protein S6e OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps6e PE=3 SV=1
Length = 125
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ V P RV++LL RG P FR R GERR+K+V G +SP++ +N+
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVKILLSRG-PGFR--PRERGERRKKTVHGNTISPNIVQVNM 121
Query: 62 VIV 64
IV
Sbjct: 122 KIV 124
>sp|B6YW70|RS6E_THEON 30S ribosomal protein S6e OS=Thermococcus onnurineus (strain NA1)
GN=rps6e PE=3 SV=1
Length = 125
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ V P RV++L+ RG P FR + GERR+K+VRG +SP++ +N+
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVKILVSRG-PGFR--PKEKGERRKKTVRGNTISPEIVQINM 121
Query: 62 VIV 64
+V
Sbjct: 122 KLV 124
>sp|P54067|RS6E_METJA 30S ribosomal protein S6e OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps6e PE=3 SV=1
Length = 131
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D GFPM+ + +VR+LL P F+ +R GERRRK+VRG ++PD+ +N+
Sbjct: 51 GGTDSSGFPMRPDIHGSRKVRVLLS-APPGFKP--KRKGERRRKTVRGNTIAPDIVQINV 107
Query: 62 VIVKKGEHDLPGLTDTE 78
+V+ GE +P L E
Sbjct: 108 KVVEYGEKSIPELLGLE 124
>sp|Q8U3H8|RS6E_PYRFU 30S ribosomal protein S6e OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps6e PE=1 SV=1
Length = 125
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N+
Sbjct: 65 GGTDKDGFPMRPDIHGPRRVRVLLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVNV 121
Query: 62 VIV 64
+V
Sbjct: 122 KLV 124
>sp|Q9UYS3|RS6E_PYRAB 30S ribosomal protein S6e OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps6e PE=3 SV=1
Length = 125
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N+
Sbjct: 65 GGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVNV 121
Query: 62 VIV 64
+V
Sbjct: 122 KLV 124
>sp|O58349|RS6E_PYRHO 30S ribosomal protein S6e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps6e PE=3 SV=1
Length = 125
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N+
Sbjct: 65 GGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVNV 121
Query: 62 VIV 64
+V
Sbjct: 122 KLV 124
>sp|C3N772|RS6E_SULIY 30S ribosomal protein S6e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rps6e PE=3 SV=1
Length = 214
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D GFPM+ V + ++LL G P F Y DGERRRK++RG +S ++ +N
Sbjct: 154 GGSDNSGFPMRFDVTGAAKRKILLS-GPPGF--YPNEDGERRRKTIRGNTISQEIVQINT 210
Query: 62 VIVK 65
+IV+
Sbjct: 211 IIVR 214
>sp|C3MWZ2|RS6E_SULIM 30S ribosomal protein S6e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rps6e PE=3 SV=2
Length = 214
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D GFPM+ V + ++LL G P F Y DGERRRK++RG +S ++ +N
Sbjct: 154 GGSDNSGFPMRFDVTGAAKRKILLS-GPPGF--YPNEDGERRRKTIRGNTISQEIVQINT 210
Query: 62 VIVK 65
+IV+
Sbjct: 211 IIVR 214
>sp|C3MR04|RS6E_SULIL 30S ribosomal protein S6e OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rps6e PE=3 SV=1
Length = 214
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D GFPM+ V + ++LL G P F Y DGERRRK++RG +S ++ +N
Sbjct: 154 GGSDNSGFPMRFDVTGAAKRKILLS-GPPGF--YPNEDGERRRKTIRGNTISQEIVQINT 210
Query: 62 VIVK 65
+IV+
Sbjct: 211 IIVR 214
>sp|C4KID0|RS6E_SULIK 30S ribosomal protein S6e OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=rps6e PE=3 SV=1
Length = 214
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
GG D GFPM+ V + ++LL G P F Y DGERRRK++RG +S ++ +N
Sbjct: 154 GGSDNSGFPMRFDVTGAAKRKILLS-GPPGF--YPNEDGERRRKTIRGNTISQEIVQINT 210
Query: 62 VIVK 65
+IV+
Sbjct: 211 IIVR 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,143,931
Number of Sequences: 539616
Number of extensions: 2606862
Number of successful extensions: 12063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 11463
Number of HSP's gapped (non-prelim): 602
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)