Query 029217
Match_columns 197
No_of_seqs 162 out of 359
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 15:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a77a1 a.60.7.1 (A:209-316) F 29.9 8.6 0.00063 26.4 1.2 22 75-96 15-38 (108)
2 d1v8ha1 b.1.18.19 (A:2-107) Su 22.8 34 0.0025 23.7 3.4 49 10-70 10-58 (106)
3 d1cmwa1 a.60.7.1 (A:174-289) 5 12.0 50 0.0037 22.1 2.0 24 68-97 17-40 (116)
4 d1xo1a1 a.60.7.1 (A:186-290) T 9.7 48 0.0035 22.6 1.1 23 68-96 18-40 (105)
5 d1gm5a2 b.40.4.9 (A:106-285) R 9.0 51 0.0037 23.5 1.1 32 75-107 10-41 (180)
6 d1rxwa1 a.60.7.1 (A:220-324) F 7.1 78 0.0057 21.1 1.3 24 67-96 14-37 (105)
7 d1kfta_ a.60.2.3 (A:) Excinucl 6.5 1.1E+02 0.0078 18.4 1.7 15 82-96 9-23 (56)
8 d1ah9a_ b.40.4.5 (A:) Translat 6.2 1.3E+02 0.0098 19.2 2.1 20 14-33 14-35 (71)
9 d1c20a_ a.4.3.1 (A:) DNA-bindi 5.9 97 0.0071 21.4 1.3 46 84-130 4-49 (128)
10 d2i1qa1 a.60.4.1 (A:5-64) DNA 5.7 90 0.0066 19.0 0.9 13 82-94 6-18 (60)
No 1
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.90 E-value=8.6 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.111 Sum_probs=16.6
Q ss_pred CCCCCC--CcCCCCchhhHHHHhC
Q 029217 75 TDTEKP--RMRGPKRASKIRKLFN 96 (197)
Q Consensus 75 Td~~~p--~~lgPKRaskIrKlFn 96 (197)
||.+.| ...|||.|.++-+-|+
T Consensus 15 ~dyn~pGV~GIGpktA~klIk~~g 38 (108)
T d1a77a1 15 TDYNPGGVKGIGFKRAYELVRSGV 38 (108)
T ss_dssp CTTSTTCSTTCCHHHHHHHHHTTC
T ss_pred CcCCCCCCCCcCHHHHHHHHHHcC
Confidence 555443 5789999999988776
No 2
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=22.80 E-value=34 Score=23.75 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=32.2
Q ss_pred CcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcC
Q 029217 10 PMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHD 70 (197)
Q Consensus 10 PMkqgVlt~~RvrlLLskG~sgyrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~ 70 (197)
|++--.=..-+|++|++. |..+|-|+=+ .|..|.++ .|+.+++..+.+.
T Consensus 10 p~~~~~G~v~~vk~li~H--------PMeTG~r~d~--~g~~IPa~--~I~~v~v~~ng~~ 58 (106)
T d1v8ha1 10 PAKPKAGEEFRLQVVAQH--------PNEPGTRRDA--EGKLIPAK--YINLVEVYFEGEK 58 (106)
T ss_dssp SSSCCTTCEEEEEEEECC--------CCBCSCCBCT--TSCBCCCB--CEEEEEEEETTEE
T ss_pred CCccCCCCeEEEEEEEEC--------CCccccccCC--CCCEecHH--heEEEEEEECCEE
Confidence 444333334578888873 8888987754 48888766 4666777766554
No 3
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=11.98 E-value=50 Score=22.08 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=19.1
Q ss_pred CcCCCCCCCCCCCCcCCCCchhhHHHHhCC
Q 029217 68 EHDLPGLTDTEKPRMRGPKRASKIRKLFNL 97 (197)
Q Consensus 68 ek~I~gLTd~~~p~~lgPKRaskIrKlFnL 97 (197)
...|||+. ..|||-|.++-+-|+-
T Consensus 17 sDnipGv~------GiG~KtA~kll~~~gs 40 (116)
T d1cmwa1 17 SDNLPGVK------GIGEKTARKLLEEWGS 40 (116)
T ss_dssp SSCCCCCC------CSTTCTTTTTGGGGGT
T ss_pred ccCccccc------ccCchhHHHHHHhcch
Confidence 46788874 5899999999888863
No 4
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=9.71 E-value=48 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.3
Q ss_pred CcCCCCCCCCCCCCcCCCCchhhHHHHhC
Q 029217 68 EHDLPGLTDTEKPRMRGPKRASKIRKLFN 96 (197)
Q Consensus 68 ek~I~gLTd~~~p~~lgPKRaskIrKlFn 96 (197)
...|||+. ..|||.|.++-+-|+
T Consensus 18 sDnipGV~------GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 18 GDNIRGVE------GIGAKRGYNIIREFG 40 (105)
T ss_dssp GGTBCCCT------TCCHHHHHHHHHHHC
T ss_pred ccCCcCcC------CcCHHHHHHHHHHcc
Confidence 34577764 589999999999887
No 5
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.99 E-value=51 Score=23.49 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCCCCCcCCCCchhhHHHHhCCCCcchHhHhh
Q 029217 75 TDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYV 107 (197)
Q Consensus 75 Td~~~p~~lgPKRaskIrKlFnLsk~ddV~kyV 107 (197)
||.+.=+..|||++..+.++ |+..-.|+--|.
T Consensus 10 ~~i~~lkGvGpk~~~~L~kl-gI~ti~DLL~~~ 41 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKKL-GIETLRDLLEFF 41 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHTT-TCCSSGGGTSCC
T ss_pred CChhhcCCcCHHHHHHHHHh-CCCcHHHHHHhC
Confidence 55666678999999999986 888777754443
No 6
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.07 E-value=78 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCcCCCCCCCCCCCCcCCCCchhhHHHHhC
Q 029217 67 GEHDLPGLTDTEKPRMRGPKRASKIRKLFN 96 (197)
Q Consensus 67 Gek~I~gLTd~~~p~~lgPKRaskIrKlFn 96 (197)
|..-|||+.. .|||.|.++-+-|+
T Consensus 14 GsDn~pGV~G------IG~ktA~kli~~~g 37 (105)
T d1rxwa1 14 GTDYNEGVKG------VGVKKALNYIKTYG 37 (105)
T ss_dssp CBTTBCCCTT------CCHHHHHHHHHHHS
T ss_pred CCCCCCCCCC------cCHHHHHHHHHHhC
Confidence 4455666554 79999999988887
No 7
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=1.1e+02 Score=18.38 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.6
Q ss_pred cCCCCchhhHHHHhC
Q 029217 82 MRGPKRASKIRKLFN 96 (197)
Q Consensus 82 ~lgPKRaskIrKlFn 96 (197)
..||++|.+|-+-|+
T Consensus 9 gVG~~~a~~L~~~F~ 23 (56)
T d1kfta_ 9 GVGPKRRQMLLKYMG 23 (56)
T ss_dssp TCSSSHHHHHHHHHS
T ss_pred CccHHHHHHHHHHhC
Confidence 479999999999997
No 8
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=6.16 E-value=1.3e+02 Score=19.17 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.3
Q ss_pred CCCCCCeEEEeecCCCc--ccc
Q 029217 14 GVLTPGRVRLLLHRGTP--CFR 33 (197)
Q Consensus 14 gVlt~~RvrlLLskG~s--gyr 33 (197)
.+|++++.++.|..|+. ||-
T Consensus 14 e~lg~~~f~V~l~ng~~~~a~i 35 (71)
T d1ah9a_ 14 ETLPNTMFRVELENGHVVTAHI 35 (71)
T ss_dssp EECSSSEEEEEETTSCEEEEEE
T ss_pred EEcCCCEEEEEeCCCCEEEEEc
Confidence 46899999999999985 555
No 9
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.86 E-value=97 Score=21.45 Aligned_cols=46 Identities=13% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCchhhHHHHhCCCCcchHhHhhhhhhccccccCCcccccCCCccc
Q 029217 84 GPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQR 130 (197)
Q Consensus 84 gPKRaskIrKlFnLsk~ddV~kyV~~~irr~~k~~kk~~~KapKIQr 130 (197)
.+.+...|++||-+..+.+-..|... +..-+.....+-.+.|.|..
T Consensus 4 ~~~~~~~~~~l~e~~~~~er~~F~~~-L~~f~~~rg~~~~~~P~i~g 49 (128)
T d1c20a_ 4 FEEQFKQVRQLYEINDDPKRKEFLDD-LFSFMQKRGTPINRLPIMAK 49 (128)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTTTSSCSSCCCEETT
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHH-HHHHHHHcCCccCcCCeECC
Confidence 35678899999988766555556543 33334444566678888863
No 10
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=5.74 E-value=90 Score=18.96 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.1
Q ss_pred cCCCCchhhHHHH
Q 029217 82 MRGPKRASKIRKL 94 (197)
Q Consensus 82 ~lgPKRaskIrKl 94 (197)
..||+++.++.+-
T Consensus 6 GIG~~~a~~L~~~ 18 (60)
T d2i1qa1 6 GVGPSTAEKLVEA 18 (60)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 4699999999886
Done!