Query 029218
Match_columns 197
No_of_seqs 98 out of 100
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 15:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 69.8 1.6 0.00012 35.2 3.4 44 144-187 27-76 (203)
2 d1x3zb1 a.189.1.1 (B:253-309) 69.8 1.1 8E-05 29.5 2.0 30 168-197 28-57 (57)
3 d1v29a_ d.149.1.1 (A:) Cobalt- 59.7 3.8 0.00028 32.8 3.9 44 144-187 26-75 (203)
4 d2qdya1 d.149.1.1 (A:10-206) I 58.9 2.2 0.00016 34.2 2.2 43 145-187 22-70 (197)
5 d1b0na1 a.34.1.1 (A:74-108) Si 45.5 6.8 0.0005 23.4 2.4 22 141-163 9-30 (35)
6 d1b0nb_ a.34.1.1 (B:) SinI ant 22.5 35 0.0026 19.4 2.8 21 141-162 11-31 (31)
7 d1lnza1 b.117.1.1 (A:1-157) Ob 22.4 32 0.0023 25.4 3.3 6 82-87 13-18 (157)
8 d1udxa1 b.117.1.1 (A:1-156) Ob 19.7 36 0.0027 25.1 3.1 6 82-87 13-18 (156)
9 d2p0ta1 a.290.1.1 (A:22-169) U 17.0 72 0.0053 23.2 4.3 26 134-159 21-48 (148)
10 d1bl0a1 a.4.1.8 (A:9-62) MarA 15.6 1E+02 0.0075 17.6 4.1 48 123-171 5-52 (54)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=69.81 E-value=1.6 Score=35.15 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=31.4
Q ss_pred HHHhcCcCHHHHHHHHhh-hcC--cc-hHHHHHHhh--hHHHHhhhcCch
Q 029218 144 AAKTVGIRKMFLLRYLDL-QGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~L-~as--p~-~l~~L~rs~--p~fR~RLLADP~ 187 (197)
.++.|.|+.+.+.++++. +.. |. =.+.+-|+| |.||.|||+|+.
T Consensus 27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 467899999999999994 333 31 023344444 599999999986
No 2
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=69.77 E-value=1.1 Score=29.46 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHhhhHHHHhhhcCchhhhhhhhccC
Q 029218 168 LGFLMRYCFMLRDRMLADPSFLFKVGTEVC 197 (197)
Q Consensus 168 l~~L~rs~p~fR~RLLADP~FL~Kl~~E~V 197 (197)
+--|+.++|-+|+.+|+||.-+..+..|-|
T Consensus 28 le~ls~ryp~lre~im~npe~fismlleav 57 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEAV 57 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhhC
Confidence 455677789999999999997777777754
No 3
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=59.75 E-value=3.8 Score=32.78 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=32.1
Q ss_pred HHHhcCcCHHHHHHHHh-hhcC--cc-hHHHHHHhh--hHHHHhhhcCch
Q 029218 144 AAKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (197)
Q Consensus 144 Aae~GgIrsa~L~Ryl~-L~as--p~-~l~~L~rs~--p~fR~RLLADP~ 187 (197)
.++.|.|+.+.+.+.++ ++.. |. =.+.+-|+| |.||.|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 46889999999999998 4443 31 123455555 499999999987
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=58.95 E-value=2.2 Score=34.17 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHhcCcCHHHHHHHHhh-hcCcch---HHHHHHhh--hHHHHhhhcCch
Q 029218 145 AKTVGIRKMFLLRYLDL-QGSVWP---LGFLMRYC--FMLRDRMLADPS 187 (197)
Q Consensus 145 ae~GgIrsa~L~Ryl~L-~asp~~---l~~L~rs~--p~fR~RLLADP~ 187 (197)
++.|.|+.+.+.++++. +....| .+.+-|+| |.||.|||+|+.
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 46789999999998874 554211 23344444 499999999997
No 5
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=45.50 E-value=6.8 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=17.0
Q ss_pred HHHHHHhcCcCHHHHHHHHhhhc
Q 029218 141 MMEAAKTVGIRKMFLLRYLDLQG 163 (197)
Q Consensus 141 L~eAae~GgIrsa~L~Ryl~L~a 163 (197)
+.+|...| ||+++...||+.++
T Consensus 9 VkeAM~SG-vSK~QFrEflef~k 30 (35)
T d1b0na1 9 VRDAMTSG-VSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHH
T ss_pred HHHHHHcc-CCHHHHHHHHHHHH
Confidence 34555555 99999999999864
No 6
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=22.51 E-value=35 Score=19.41 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=14.9
Q ss_pred HHHHHHhcCcCHHHHHHHHhhh
Q 029218 141 MMEAAKTVGIRKMFLLRYLDLQ 162 (197)
Q Consensus 141 L~eAae~GgIrsa~L~Ryl~L~ 162 (197)
|.+|.+ .-|+++.+.+||-|+
T Consensus 11 mveake-anispeeirkyllln 31 (31)
T d1b0nb_ 11 MVEAKE-ANISPEEIRKYLLLN 31 (31)
T ss_dssp HHHHHH-TTCCHHHHHHHHHHC
T ss_pred HHHHHH-cCCCHHHHHHHHhcC
Confidence 445544 459999999998663
No 7
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.40 E-value=32 Score=25.38 Aligned_cols=6 Identities=83% Similarity=1.708 Sum_probs=2.2
Q ss_pred CCCCCC
Q 029218 82 GDGGAG 87 (197)
Q Consensus 82 G~G~~G 87 (197)
|.|+.|
T Consensus 13 G~GG~G 18 (157)
T d1lnza1 13 GDGGNG 18 (157)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 333333
No 8
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.66 E-value=36 Score=25.07 Aligned_cols=6 Identities=67% Similarity=1.431 Sum_probs=2.7
Q ss_pred CCCCCC
Q 029218 82 GDGGAG 87 (197)
Q Consensus 82 G~G~~G 87 (197)
|.|++|
T Consensus 13 G~GG~G 18 (156)
T d1udxa1 13 GRGGDG 18 (156)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 444444
No 9
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=16.98 E-value=72 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHhc-CcCH-HHHHHHH
Q 029218 134 GVGLPDDMMEAAKTV-GIRK-MFLLRYL 159 (197)
Q Consensus 134 g~SLPaDL~eAae~G-gIrs-a~L~Ryl 159 (197)
..+||.+|.+|+... +|.+ ....|-+
T Consensus 21 ~lpl~e~L~~AI~~~~ri~~~~A~rRQ~ 48 (148)
T d2p0ta1 21 KLPLTDALRKALAEAPKHTANIARKRHI 48 (148)
T ss_dssp TSCCCHHHHHHHHHGGGCCSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhhccchHHHHHH
Confidence 345788899888765 6765 3444433
No 10
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=15.56 E-value=1e+02 Score=17.59 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHhcCcCHHHHHHHHhhhcCcchHHHH
Q 029218 123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFL 171 (197)
Q Consensus 123 ~eeVLaEa~Rrg~SLPaDL~eAae~GgIrsa~L~Ryl~L~asp~~l~~L 171 (197)
+++|++-..+... =|-++.+-++.-++++..+.|.|.=...-.|..||
T Consensus 5 i~~v~~yI~~~~~-~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 5 IHSILDWIEDNLE-SPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHTTTT-SCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 5667776666664 47788888999999999999998866665555553
Done!