BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029220
MASTRILSPTAAAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPIT
TSTSTTTTNKETVFFDGGAHYGDLLANLLLGFTLFWLPLTLAAVSRAFNLRYRFTNLRVT
VISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCV
SMAEQPVVFKETGPKGF

High Scoring Gene Products

Symbol, full name Information P value
AT1G14345 protein from Arabidopsis thaliana 7.7e-48

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029220
        (197 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006122 - symbol:AT1G14345 species:3702 "Ara...   500  7.7e-48   1


>TAIR|locus:505006122 [details] [associations]
            symbol:AT1G14345 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR001395
            EMBL:CP002684 GenomeReviews:CT485782_GR PANTHER:PTHR11732
            GO:GO:0009535 EMBL:AY050917 EMBL:AY113966 EMBL:AY085870
            EMBL:AK220597 IPI:IPI00517916 RefSeq:NP_563947.1 UniGene:At.26548
            STRING:Q949S6 PaxDb:Q949S6 PRIDE:Q949S6 EnsemblPlants:AT1G14345.1
            GeneID:837996 KEGG:ath:AT1G14345 TAIR:At1g14345 eggNOG:NOG12260
            HOGENOM:HOG000233072 InParanoid:Q949S6 PhylomeDB:Q949S6
            ProtClustDB:CLSN2687800 ArrayExpress:Q949S6 Genevestigator:Q949S6
            InterPro:IPR005182 Pfam:PF03703 Uniprot:Q949S6
        Length = 196

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 108/197 (54%), Positives = 120/197 (60%)

Query:     2 ASTRILSPTAAAAVGITHKSIYLXXXXXXXXXXXX-XXXXHNRPITKLNVXXXXXXXXXX 60
             AS+ I  P + A   +  KS+ L                   R I +L +          
Sbjct:     3 ASSSI--PPSTAVTSVVRKSLLLSTTFSFPASSLSPSTKLPQRHIQRL-LLASSSASAST 59

Query:    61 XXXXXXXXXXXXVFFDGGAHYGDXXXXXXXXXXXXXXXXXXAAVSRAFNLRYRFTNLRVT 120
                         V+FDGGAHYGD                  AAVSRAFNLRYRFTNLRVT
Sbjct:    60 VPSDSKPAKKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFNLRYRFTNLRVT 119

Query:   121 VISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCV 180
             VISG TG+DRSDFSYKVIKDVQVVPRFIG+WGDIIITLKDGTKVDLRSVPKFREIAKYC+
Sbjct:   120 VISGLTGDDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSVPKFREIAKYCL 179

Query:   181 SMAEQPVVFKETGPKGF 197
             SMA+QP V KE+G KGF
Sbjct:   180 SMADQPAVLKESGAKGF 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       141   0.00091  102 3  11 22  0.40    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.07u 0.14s 10.21t   Elapsed:  00:00:01
  Total cpu time:  10.07u 0.14s 10.21t   Elapsed:  00:00:01
  Start:  Fri May 10 11:06:31 2013   End:  Fri May 10 11:06:32 2013

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