BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029220
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PBE|A Chain A, Crystal Structure Of An Aminoglycoside 6-Adenyltransferase
           From Bacillus Subtilis
          Length = 294

 Score = 33.1 bits (74), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 139 KDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKY 178
           +D ++ P  +G+W   II  +DG K+DL  +P  RE   Y
Sbjct: 77  EDXELFPPELGNWFSYIILFEDGNKLDLTLIP-IREAEDY 115


>pdb|3TNY|A Chain A, Structure Of Yfiy From Bacillus Cereus Bound To The
           Siderophore Iron (Iii) Schizokinen
          Length = 303

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 119 VTVISGWTGEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKY 178
           V  +  WTG    D  Y  IKD     + +GD G + +      K DL    K R    Y
Sbjct: 56  VGAVKSWTG----DPWYPHIKDKMKDVKVVGDEGQVNVETIASLKPDLIIGNKMRHEKVY 111

Query: 179 CVSMAEQPVVFKET 192
               A  P VF ET
Sbjct: 112 EQLKAIAPTVFSET 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,000,209
Number of Sequences: 62578
Number of extensions: 123039
Number of successful extensions: 277
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)