BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029220
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P40020|FIR1_YEAST Factor interacting with REF2 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=FIR1 PE=1 SV=3
          Length = 876

 Score = 33.9 bits (76), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 26  SKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTN 69
           S PP+P+S P+  V H+ P T + +   P  +P+  ++S  T++
Sbjct: 500 STPPAPTSAPSIPVEHSNPCTSIEI---PKRSPLRFTSSPKTSD 540


>sp|B3WEG3|FTHS_LACCB Formate--tetrahydrofolate ligase OS=Lactobacillus casei (strain
          BL23) GN=fhs PE=3 SV=1
          Length = 557

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 28/69 (40%)

Query: 12 AAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNKE 71
          AA +G++   + L+ K  +  SF       ++P  KL + +  N TP     ST T    
Sbjct: 22 AAGLGLSEDDLELYGKAKAKLSFSALNALKDKPFGKLVLVTSINPTPAGEGKSTITVGLG 81

Query: 72 TVFFDGGAH 80
                G H
Sbjct: 82 DALQQRGKH 90


>sp|Q038Y4|FTHS_LACC3 Formate--tetrahydrofolate ligase OS=Lactobacillus casei (strain
          ATCC 334) GN=fhs PE=3 SV=1
          Length = 557

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 28/69 (40%)

Query: 12 AAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNKE 71
          AA +G++   + L+ K  +  SF       ++P  KL + +  N TP     ST T    
Sbjct: 22 AAGLGLSEDDLELYGKAKAKLSFSALNALKDKPFGKLVLVTSINPTPAGEGKSTITVGLG 81

Query: 72 TVFFDGGAH 80
                G H
Sbjct: 82 DALQQRGKH 90


>sp|P17585|AADK_BACSU Aminoglycoside 6-adenylyltransferase OS=Bacillus subtilis (strain
           168) GN=aadK PE=1 SV=1
          Length = 284

 Score = 32.7 bits (73), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 139 KDVQVVPRFIGDWGDIIITLKDGTKVDLRSVPKFREIAKY 178
           +D+++ P  +G+W   II  +DG K+DL  +P  RE   Y
Sbjct: 75  EDMELFPPELGNWFSYIILFEDGNKLDLTLIP-IREAEDY 113


>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
          Length = 1533

 Score = 32.3 bits (72), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 28   PPSPSS----FPTFTVTHNRPITKLNVSSPPNETPITTSTSTTTTNK 70
            PPSPSS    FP  T T  +P++K NV+         +STSTT   K
Sbjct: 1391 PPSPSSPVADFPAVTETI-KPVSKKNVTVKKTAAKSQSSTSTTGAKK 1436


>sp|Q9Y7Q9|YCX2_SCHPO Probable metabolite transporter C2H8.02 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPCC2H8.02 PE=1 SV=1
          Length = 583

 Score = 31.6 bits (70), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 40  THNRPITKLNVSSPPNETPITTSTSTTTTNKETVFFDGGAHYGDL----LANLLLGFTLF 95
            H RP  ++  SS P+  P TTS  + T  KE+    G +          A LL+G  L 
Sbjct: 305 VHIRPNNEVAPSSAPSRAPSTTSVESNTEGKESDIQTGSSFVSYFKEWRHAKLLIGSALS 364

Query: 96  WLPLTLAAVSRAFNLRYRFTNLRVTVISGWTGEDRSDFSYKVIK 139
           W  L +A         +   NL  +VI    G ++    Y +++
Sbjct: 365 WFLLDIA---------FYGINLNQSVILQEMGFNKGVNEYHILQ 399


>sp|Q834D6|FTHS_ENTFA Formate--tetrahydrofolate ligase OS=Enterococcus faecalis (strain
          ATCC 700802 / V583) GN=fhs PE=3 SV=1
          Length = 556

 Score = 30.8 bits (68), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 12 AAAVGITHKSIYLFSKPPSPSSFPTFTVTHNRPITKLNVSSPPNETPITTSTSTTT 67
          A  +G++  S+ L+ K  +   FPT      +P  KL + +  N TP     ST T
Sbjct: 20 AETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVTSINPTPAGEGKSTVT 75


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,489,053
Number of Sequences: 539616
Number of extensions: 2845261
Number of successful extensions: 14107
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 12966
Number of HSP's gapped (non-prelim): 1079
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)