Query 029220
Match_columns 197
No_of_seqs 75 out of 77
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsa_A Pleckstrin homology dom 92.5 1.1 3.9E-05 35.1 9.6 73 111-183 44-124 (126)
2 3b77_A Uncharacterized protein 88.7 1.6 5.5E-05 36.7 7.8 74 111-184 40-123 (193)
3 2gcl_A Hypothetical 63.0 kDa p 78.3 4.5 0.00015 34.7 6.3 54 128-182 190-251 (261)
4 3fss_A Histone chaperone RTT10 69.2 10 0.00035 32.7 6.3 54 127-181 181-236 (237)
5 3f5r_A FACT complex subunit PO 69.0 41 0.0014 27.9 9.7 84 110-197 38-132 (191)
6 2dj1_A Protein disulfide-isome 34.4 71 0.0024 21.7 4.8 36 153-189 94-129 (140)
7 2ckc_A Chromodomain-helicase-D 31.2 32 0.0011 25.5 2.7 41 155-195 29-69 (80)
8 1q90_G Cytochrome B6F complex 31.1 21 0.0007 23.2 1.4 28 87-114 4-31 (37)
9 3r27_A HnRNP L, heterogeneous 30.5 39 0.0013 24.5 3.0 35 134-181 44-79 (100)
10 1mek_A Protein disulfide isome 25.8 54 0.0019 21.1 2.9 33 153-186 84-119 (120)
11 3idv_A Protein disulfide-isome 23.8 82 0.0028 23.3 3.8 32 155-186 208-239 (241)
12 2dzk_A UBX domain-containing p 23.4 1.2E+02 0.0042 21.9 4.6 31 154-184 16-48 (109)
13 1vf5_G Protein PET G; photosyn 23.3 19 0.00066 23.4 0.2 29 86-114 3-31 (37)
14 2d6f_C Glutamyl-tRNA(Gln) amid 22.6 72 0.0025 30.6 4.1 37 144-180 213-250 (619)
15 3gnj_A Thioredoxin domain prot 21.1 1.3E+02 0.0043 19.2 4.0 31 153-184 79-110 (111)
16 1zq1_C Glutamyl-tRNA(Gln) amid 20.9 73 0.0025 30.7 3.7 37 144-180 219-256 (633)
No 1
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=92.48 E-value=1.1 Score=35.09 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=56.4
Q ss_pred EeEEeeeEEEEee--ccCCccc--ceeeeceeeeeEEeeccc-cceeeEEEEecCCc---eEEeecccchHHHHHHHHhh
Q 029220 111 RYRFTNLRVTVIS--GWTGEDR--SDFSYKVIKDVQVVPRFI-GDWGDIIITLKDGT---KVDLRSVPKFREIAKYCVSM 182 (197)
Q Consensus 111 RYrITnRRIsV~s--Gw~Grdr--tdIvY~eI~dV~~VpRG~-G~WGDmVvtLkDGs---rLEmRslP~Frei~~yI~~~ 182 (197)
-|-|||+|+-+.- |.+|+.+ ..++|+.|..+..-.-|. -+=..+=+.+..+. ++|++.--+.+++++.|.+.
T Consensus 44 ~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~~~pi~~~f~k~~di~~i~k~La~~ 123 (126)
T 3hsa_A 44 LFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQHEPLVXELXRGTDVVGIQXTIARY 123 (126)
T ss_dssp EEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTCSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCCceEEEEeccCcccHHHHHHHHHHH
Confidence 4679999987764 6788655 499999999999877774 33356777777655 78899999999999988776
Q ss_pred h
Q 029220 183 A 183 (197)
Q Consensus 183 ~ 183 (197)
+
T Consensus 124 v 124 (126)
T 3hsa_A 124 A 124 (126)
T ss_dssp H
T ss_pred h
Confidence 4
No 2
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=88.68 E-value=1.6 Score=36.70 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=53.6
Q ss_pred EeEEeeeEEEEee--ccCCcccc--eeeec--eeeeeEEeecccc-ceeeEEEEecCCc-eEEeec--ccchHHHHHHHH
Q 029220 111 RYRFTNLRVTVIS--GWTGEDRS--DFSYK--VIKDVQVVPRFIG-DWGDIIITLKDGT-KVDLRS--VPKFREIAKYCV 180 (197)
Q Consensus 111 RYrITnRRIsV~s--Gw~Grdrt--dIvY~--eI~dV~~VpRG~G-~WGDmVvtLkDGs-rLEmRs--lP~Frei~~yI~ 180 (197)
-|-|||+||-+.- |.+|+.+. .++|+ .|..+..-.-|.. +=..|-+....+. .+|++. .-+.+++|+.+.
T Consensus 40 ~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtfDlDaElki~i~~~~~~Ief~K~~~~di~~lyk~L~ 119 (193)
T 3b77_A 40 EYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTVDLDVEIKFEIGGKHYSIDVDKKQLEHVKDLYKALL 119 (193)
T ss_dssp EEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSSCCEEEEEEEETTEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecceeccCccEEEEEcCceEEEEeCCcchhhHHHHHHHHH
Confidence 4779999998776 67887665 49999 9999998777753 3356666666544 688887 778899998877
Q ss_pred hhhc
Q 029220 181 SMAE 184 (197)
Q Consensus 181 ~~~e 184 (197)
+..+
T Consensus 120 ~is~ 123 (193)
T 3b77_A 120 AIAE 123 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 3
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=78.29 E-value=4.5 Score=34.67 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=43.1
Q ss_pred cccceeeeceeeeeEEeec-cc----cceeeEEEEecCC-ceEEeeccc--chHHHHHHHHhh
Q 029220 128 EDRSDFSYKVIKDVQVVPR-FI----GDWGDIIITLKDG-TKVDLRSVP--KFREIAKYCVSM 182 (197)
Q Consensus 128 rdrtdIvY~eI~dV~~VpR-G~----G~WGDmVvtLkDG-srLEmRslP--~Frei~~yI~~~ 182 (197)
|--.=|.|+||..|..- | |- ...=||+|++|+| ...|..++. .|..+.+|+.+.
T Consensus 190 KP~~~i~~~~I~sV~fs-rvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~~~L~~ylk~k 251 (261)
T 2gcl_A 190 KPTLYIPFSDVSMVNIS-RAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSK 251 (261)
T ss_dssp SSCEEEEGGGEEEEEEE-C--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCcEEEEhhHeeEEEEE-eccCCcccCceEEEEEEEcCCCccEEEcccCHHHHHHHHHHHHHc
Confidence 45578999999999984 5 53 3456999999999 899999988 588999999865
No 4
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=69.15 E-value=10 Score=32.75 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.9
Q ss_pred CcccceeeeceeeeeEEeeccccceeeEEEEecCCceEEeecc--cchHHHHHHHHh
Q 029220 127 GEDRSDFSYKVIKDVQVVPRFIGDWGDIIITLKDGTKVDLRSV--PKFREIAKYCVS 181 (197)
Q Consensus 127 GrdrtdIvY~eI~dV~~VpRG~G~WGDmVvtLkDGsrLEmRsl--P~Frei~~yI~~ 181 (197)
.|--.=|.|++|..|++ .|-.+..=||+|++|+|...|+-.+ -.|..+.+|+.+
T Consensus 181 ~KP~l~i~~~dI~svs~-Srv~~RTFdl~v~~k~g~e~eFsmIDq~E~~~Id~fvk~ 236 (237)
T 3fss_A 181 KKPILLLDASDIESITY-SSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKR 236 (237)
T ss_dssp SSSCEEEEGGGEEEEEE-ESCCSSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHC
T ss_pred CCCeEEEEehhEEEEEE-EeccCcEEEEEEEECCCCeEEEeecCHHHHHHHHHHHhc
Confidence 46677788999999888 4766767799999999998887776 458889999875
No 5
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=68.96 E-value=41 Score=27.95 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=62.3
Q ss_pred eEeEEeeeEEEEeeccCCc-------ccceeeeceeeeeEE--eeccccceeeEEEEecCCceEEeecccc--hHHHHHH
Q 029220 110 LRYRFTNLRVTVISGWTGE-------DRSDFSYKVIKDVQV--VPRFIGDWGDIIITLKDGTKVDLRSVPK--FREIAKY 178 (197)
Q Consensus 110 lRYrITnRRIsV~sGw~Gr-------drtdIvY~eI~dV~~--VpRG~G~WGDmVvtLkDGsrLEmRslP~--Frei~~y 178 (197)
-|+|+++--|.--+--.+. +...|.=+||..+.- ++||.+ +=|.+|||..+.+-+..+ |.++.+|
T Consensus 38 G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~rg~~----LrI~~K~g~~~~fdGF~~~D~~~L~~~ 113 (191)
T 3f5r_A 38 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYD----LKINTKNQGVIQLDGFSQDDYNLIKND 113 (191)
T ss_dssp EEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSSSEE----EEEEESSSCEEEEEEECGGGHHHHHHH
T ss_pred cEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEccCCcE----EEEEECCCceEEecCCCHHHHHHHHHH
Confidence 4677777766444320122 667888899999876 445544 477889999999988875 9999999
Q ss_pred HHhhhcCCeecccCCCCCC
Q 029220 179 CVSMAEQPVVFKETGPKGF 197 (197)
Q Consensus 179 I~~~~e~~~vlk~~~~kgf 197 (197)
+.+.-.-++.-||---||.
T Consensus 114 fk~~f~i~Le~kEls~kGw 132 (191)
T 3f5r_A 114 FHRRFNIQVEQREHSLRGW 132 (191)
T ss_dssp HHHHHCCCCEECSSTTTTC
T ss_pred HHHHcCCCceeeeeecccc
Confidence 9999998888888777663
No 6
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.42 E-value=71 Score=21.67 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=27.4
Q ss_pred eEEEEecCCceEEeecccchHHHHHHHHhhhcCCeec
Q 029220 153 DIIITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVF 189 (197)
Q Consensus 153 DmVvtLkDGsrLEmRslP~Frei~~yI~~~~e~~~vl 189 (197)
.+++. +||....+.+.....++.++|.++...+..-
T Consensus 94 t~~~~-~~G~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 129 (140)
T 2dj1_A 94 TIKIL-KKGQAVDYDGSRTQEEIVAKVREVSQPDWTP 129 (140)
T ss_dssp EEEEE-ETTEEEECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred eEEEE-ECCcEEEcCCCCCHHHHHHHHHHhcCCCCCC
Confidence 34444 8898666777788899999999998877653
No 7
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=31.20 E-value=32 Score=25.52 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred EEEecCCceEEeecccchHHHHHHHHhhhcCCeecccCCCC
Q 029220 155 IITLKDGTKVDLRSVPKFREIAKYCVSMAEQPVVFKETGPK 195 (197)
Q Consensus 155 VvtLkDGsrLEmRslP~Frei~~yI~~~~e~~~vlk~~~~k 195 (197)
|+.++||+|+-=.--|+=+++.++++++-+=.+.+-..+|+
T Consensus 29 ViN~~dGtrL~Ge~AP~~KdL~dWLrqhP~y~vD~p~f~p~ 69 (80)
T 2ckc_A 29 VINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTVDMPSYVPK 69 (80)
T ss_dssp EEETTTTEEECTTSSCBHHHHHHHHHHCTTEEESCCCCCCC
T ss_pred eeecCCCcccccccCccccCHHHHHHHCCCcEEecCCcccc
Confidence 78899999998888899999999999987766655555554
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.14 E-value=21 Score=23.25 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHHHHHHHhHhceeEeEE
Q 029220 87 NLLLGFTLFWLPLTLAAVSRAFNLRYRF 114 (197)
Q Consensus 87 nlllg~TlI~lPltiaAi~RalWlRYrI 114 (197)
++|+|+-+=.+|.+++.+.=+.|+.||=
T Consensus 4 ~lL~GIVlGlipvtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 4 PLLCGIVLGLVPVTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 4677777777888888888888888863
No 9
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=30.49 E-value=39 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=25.1
Q ss_pred eeceeeeeEEee-ccccceeeEEEEecCCceEEeecccchHHHHHHHHh
Q 029220 134 SYKVIKDVQVVP-RFIGDWGDIIITLKDGTKVDLRSVPKFREIAKYCVS 181 (197)
Q Consensus 134 vY~eI~dV~~Vp-RG~G~WGDmVvtLkDGsrLEmRslP~Frei~~yI~~ 181 (197)
.|.+|++|+.++ ||+|. |||.....-....+++..
T Consensus 44 ~fG~V~~v~i~~~kg~AF-------------Vef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 44 EFGPISYVVVMPKKRQAL-------------VEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp GGSCEEEEEEETTTTEEE-------------EEESSHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCCCEEE-------------EEECCHHHHHHHHHHhcC
Confidence 356666666653 78888 999888777777777654
No 10
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=25.77 E-value=54 Score=21.13 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=23.7
Q ss_pred eEEEEecCCceE---EeecccchHHHHHHHHhhhcCC
Q 029220 153 DIIITLKDGTKV---DLRSVPKFREIAKYCVSMAEQP 186 (197)
Q Consensus 153 DmVvtLkDGsrL---EmRslP~Frei~~yI~~~~e~~ 186 (197)
.+++. +||..+ ...+.....++.++|.++.+.+
T Consensus 84 t~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 119 (120)
T 1mek_A 84 TIKFF-RNGDTASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp EEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred EEEEE-eCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence 34444 888764 5666677889999998887654
No 11
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=23.78 E-value=82 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=26.4
Q ss_pred EEEecCCceEEeecccchHHHHHHHHhhhcCC
Q 029220 155 IITLKDGTKVDLRSVPKFREIAKYCVSMAEQP 186 (197)
Q Consensus 155 VvtLkDGsrLEmRslP~Frei~~yI~~~~e~~ 186 (197)
++..+||..++..+.-...++.+||.++....
T Consensus 208 ~~~~~~g~~~~~~g~~~~~~l~~~l~~~~~~~ 239 (241)
T 3idv_A 208 LKIFRKGRPYDYNGPREKYGIVDYMIEQSGAA 239 (241)
T ss_dssp EEEEETTEEEECCSCCSHHHHHHHHHHHTTCT
T ss_pred EEEEECCeEEEecCCCCHHHHHHHHHhhhCCC
Confidence 44467899999888889999999999987654
No 12
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=23.36 E-value=1.2e+02 Score=21.92 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=23.5
Q ss_pred EEEEecCCceEEeeccc--chHHHHHHHHhhhc
Q 029220 154 IIITLKDGTKVDLRSVP--KFREIAKYCVSMAE 184 (197)
Q Consensus 154 mVvtLkDGsrLEmRslP--~Frei~~yI~~~~e 184 (197)
+-|-|-||+|++-|=-+ ..+++++||..+.+
T Consensus 16 IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~ 48 (109)
T 2dzk_A 16 IQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG 48 (109)
T ss_dssp EEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC
Confidence 45566699988876544 68999999988743
No 13
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=23.30 E-value=19 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.199 Sum_probs=19.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHhceeEeEE
Q 029220 86 ANLLLGFTLFWLPLTLAAVSRAFNLRYRF 114 (197)
Q Consensus 86 ~nlllg~TlI~lPltiaAi~RalWlRYrI 114 (197)
=++|+|+-+=.+|.+++.+.=+.|+.||=
T Consensus 3 EplL~GIVlGlipvtl~GLfv~Ay~QyrR 31 (37)
T 1vf5_G 3 EPLLDGLVLGLVFATLGGLFYAAYQQYKR 31 (37)
T ss_dssp ------CHHHHHHHHHHHHTHHHHHHTCC
T ss_pred chhhhhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 35677877778888888888888888863
No 14
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=22.64 E-value=72 Score=30.64 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=30.3
Q ss_pred eeccccce-eeEEEEecCCceEEeecccchHHHHHHHH
Q 029220 144 VPRFIGDW-GDIIITLKDGTKVDLRSVPKFREIAKYCV 180 (197)
Q Consensus 144 VpRG~G~W-GDmVvtLkDGsrLEmRslP~Frei~~yI~ 180 (197)
+.||.|.- =|+=|-++.|+|+|+..|..|+.+.+-|.
T Consensus 213 v~~g~GslR~DvNVSi~~G~RvEIKnvns~~~i~~ai~ 250 (619)
T 2d6f_C 213 VKRGLGTIRQDLNISIRDGARVEVKGVQDLDLIPEIVE 250 (619)
T ss_dssp CCCSSTTCEEEEEEECTTSCCEEEECCCCGGGHHHHHH
T ss_pred CccCCCccccccccccCCCceeEeeCCccHHHHHHHHH
Confidence 45665544 68899999999999999999999887654
No 15
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=21.09 E-value=1.3e+02 Score=19.25 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred eEEEEecCCceE-EeecccchHHHHHHHHhhhc
Q 029220 153 DIIITLKDGTKV-DLRSVPKFREIAKYCVSMAE 184 (197)
Q Consensus 153 DmVvtLkDGsrL-EmRslP~Frei~~yI~~~~e 184 (197)
.+++. +||..+ ...+.....++.++|.++.+
T Consensus 79 t~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 79 QILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 44444 889876 46677778888888888754
No 16
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=20.86 E-value=73 Score=30.68 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.0
Q ss_pred eeccccce-eeEEEEecCCceEEeecccchHHHHHHHH
Q 029220 144 VPRFIGDW-GDIIITLKDGTKVDLRSVPKFREIAKYCV 180 (197)
Q Consensus 144 VpRG~G~W-GDmVvtLkDGsrLEmRslP~Frei~~yI~ 180 (197)
+.||.|.- =|+=|-+++|+|+|+..|..|+.+.+-|+
T Consensus 219 v~~g~GslR~DvNVSi~~G~RvEIKnvnS~~~i~~ai~ 256 (633)
T 1zq1_C 219 VKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIE 256 (633)
T ss_dssp BCCSSTTEEEEEEECCTTSCCEEEECCCSGGGHHHHHH
T ss_pred cccCCCccccccccccCCCceeEeeCCccHHHHHHHHH
Confidence 45665544 68888899999999999999999887654
Done!