Query 029221
Match_columns 197
No_of_seqs 148 out of 1038
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.6 4.7E-15 1.6E-19 119.7 9.8 111 86-197 75-194 (194)
2 1rpq_W Peptide E131; receptor- 23.4 26 0.0009 17.9 0.7 9 132-140 1-9 (26)
3 2fnj_C Transcription elongatio 10.2 1.6E+02 0.0056 19.6 2.4 21 119-139 75-95 (96)
4 2ket_A Cathelicidin-6; antimic 9.6 18 0.0006 18.7 -2.2 19 176-194 4-22 (27)
5 1pp9_G Ubiquinol-cytochrome C 8.5 4.4E+02 0.015 17.3 3.9 31 157-187 48-79 (81)
6 1a05_A IPMDH, IMDH, 3-isopropy 8.2 1.1E+02 0.0039 26.0 1.0 25 126-150 232-256 (358)
7 2y3z_A 3-isopropylmalate dehyd 8.0 1.2E+02 0.0041 25.9 1.0 25 126-150 230-254 (359)
8 1w0d_A 3-isopropylmalate dehyd 7.9 1.2E+02 0.0042 25.6 1.0 26 126-151 222-247 (337)
9 1wpw_A 3-isopropylmalate dehyd 7.8 1.2E+02 0.0042 25.6 1.0 25 127-151 211-235 (336)
10 3blx_A Isocitrate dehydrogenas 7.5 1.3E+02 0.0044 25.6 1.0 26 126-151 227-252 (349)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.59 E-value=4.7e-15 Score=119.73 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--CCCccccccCcCccCcccccchhhHHHHHHHHHHHhhHHHHHHH--H
Q 029221 86 IDLKFLGMILFLLGISGNFYHHNLLSK-MRR--NGEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCY--A 160 (197)
Q Consensus 86 ~~~~~~g~~lf~~g~~~n~~~h~~L~~-lR~--~~~~~y~iP~gglF~~vscPnY~~Eil~w~g~~l~~~~~~~~~~--~ 160 (197)
.....+|+++++.|......++.+|.+ ++. +++++.++.++|+|+++|||||+||++.++|++++.+++..++. .
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~ 154 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIV 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 356789999999999999999999954 443 34567899999999999999999999999999999888765432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cccCCCCcceeecccC
Q 029221 161 IGVTFYLMGRSYATRAWYLSK----FEDFPKHVKSIFPYIF 197 (197)
Q Consensus 161 ~~~~~~l~~~a~~~~~wY~~~----F~~yp~~r~~lIPfi~ 197 (197)
.++.. +..+....+++.+++ ++||.++.+++||+|.
T Consensus 155 ~~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 155 AWAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 22222 234444444445554 4678888889999974
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=23.39 E-value=26 Score=17.92 Aligned_cols=9 Identities=56% Similarity=1.453 Sum_probs=6.7
Q ss_pred ccccchhhH
Q 029221 132 VVCPHYLFE 140 (197)
Q Consensus 132 vscPnY~~E 140 (197)
|.|||+-.|
T Consensus 1 vqcphfcye 9 (26)
T 1rpq_W 1 VQCPHFCYE 9 (26)
T ss_dssp CCCCTHHHH
T ss_pred CCCCeeeee
Confidence 568888766
No 3
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=10.23 E-value=1.6e+02 Score=19.62 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.6
Q ss_pred ccccccCcCccCcccccchhh
Q 029221 119 KEYKIPTSGLFDKVVCPHYLF 139 (197)
Q Consensus 119 ~~y~iP~gglF~~vscPnY~~ 139 (197)
.+.+++.+-+|+.+..+||+.
T Consensus 75 ~~w~vd~~~l~eLi~AAnyLd 95 (96)
T 2fnj_C 75 PEFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp CCCCCCTTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHhC
Confidence 345799999999999999973
No 4
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=9.56 E-value=18 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHhcccCCCCcceeec
Q 029221 176 AWYLSKFEDFPKHVKSIFP 194 (197)
Q Consensus 176 ~wY~~~F~~yp~~r~~lIP 194 (197)
+++++||++--++-...||
T Consensus 4 krfrkkfkklfkklspvip 22 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 4556666543333444555
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=8.45 E-value=4.4e+02 Score=17.34 Aligned_cols=31 Identities=3% Similarity=-0.106 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCC
Q 029221 157 FCYAIGVTFYLMGRSYATRAWYLSKF-EDFPK 187 (197)
Q Consensus 157 ~~~~~~~~~~l~~~a~~~~~wY~~~F-~~yp~ 187 (197)
++..+.++..+..+|.+.++...+|- +||..
T Consensus 48 v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d~~n 79 (81)
T 1pp9_G 48 VAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCC-----
T ss_pred eehhHHHHHHHHHHHHHHHHHHhCCCHHHhcc
Confidence 34445555666677877777766665 46654
No 6
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=8.22 E-value=1.1e+02 Score=26.00 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.0
Q ss_pred cCccCcccccchhhHHHHHHHHHHH
Q 029221 126 SGLFDKVVCPHYLFEILGFWGIFFI 150 (197)
Q Consensus 126 gglF~~vscPnY~~Eil~w~g~~l~ 150 (197)
-+-|+-+.|||++|+|+.=.+=.+.
T Consensus 232 P~~FDVivt~NlfGDIlSD~aa~l~ 256 (358)
T 1a05_A 232 PAQFDVLLTGNMFGDILSDEASQLT 256 (358)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHTT
T ss_pred CCcccEEEecCcccHhHHHHHHhhc
Confidence 3568999999999999988776664
No 7
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=7.96 E-value=1.2e+02 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.7
Q ss_pred cCccCcccccchhhHHHHHHHHHHH
Q 029221 126 SGLFDKVVCPHYLFEILGFWGIFFI 150 (197)
Q Consensus 126 gglF~~vscPnY~~Eil~w~g~~l~ 150 (197)
-+-|+-+.|||++|+|+.=.+=.+.
T Consensus 230 P~~FDVivt~NlfGDILSD~aa~l~ 254 (359)
T 2y3z_A 230 PARFDVVVTGNIFGDILSDLASVLP 254 (359)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHTTT
T ss_pred cccccEEEEcCcchHHHHHHHHHhc
Confidence 3568999999999999988776554
No 8
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=7.88 E-value=1.2e+02 Score=25.63 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.6
Q ss_pred cCccCcccccchhhHHHHHHHHHHHh
Q 029221 126 SGLFDKVVCPHYLFEILGFWGIFFIA 151 (197)
Q Consensus 126 gglF~~vscPnY~~Eil~w~g~~l~~ 151 (197)
-+-|+-+.|||++|+|+.=.+-.+..
T Consensus 222 P~~FDVivt~NlfGDIlSD~aa~l~G 247 (337)
T 1w0d_A 222 PGRFDVIVTDNLFGDIITDLAAAVCG 247 (337)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECcchhHHHHHHHhhhcC
Confidence 34689999999999999988777653
No 9
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=7.77 E-value=1.2e+02 Score=25.58 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred CccCcccccchhhHHHHHHHHHHHh
Q 029221 127 GLFDKVVCPHYLFEILGFWGIFFIA 151 (197)
Q Consensus 127 glF~~vscPnY~~Eil~w~g~~l~~ 151 (197)
+-|+-+.|||++|+|+.=.+-.+..
T Consensus 211 ~~FDVivt~NlfGDIlSD~aa~l~G 235 (336)
T 1wpw_A 211 QMFDVIVTENVYGDILSDEASQIAG 235 (336)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEcCcchHHHHHHHHHhcC
Confidence 4589999999999999998877764
No 10
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=7.52 E-value=1.3e+02 Score=25.63 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.9
Q ss_pred cCccCcccccchhhHHHHHHHHHHHh
Q 029221 126 SGLFDKVVCPHYLFEILGFWGIFFIA 151 (197)
Q Consensus 126 gglF~~vscPnY~~Eil~w~g~~l~~ 151 (197)
-+-|+-+.|||++|+|+.=.+-.+..
T Consensus 227 P~~FDVivt~NlfGDIlSD~aa~l~G 252 (349)
T 3blx_A 227 PHQFDVLVTPSMYGTILGNIGAALIG 252 (349)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred cccccEEEECCcchHHHHHHHHhhcC
Confidence 34589999999999999988877763
Done!