Query 029221
Match_columns 197
No_of_seqs 148 out of 1038
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 15:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029221.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029221hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c9wc1 d.42.1.1 (C:17-112) El 8.6 42 0.003 21.1 0.4 20 119-138 75-94 (96)
2 d1y08a_ d.3.1.12 (A:) IgG-spec 7.0 1.4E+02 0.011 22.8 3.0 53 119-187 19-75 (291)
3 d1a05a_ c.77.1.1 (A:) 3-isopro 5.7 86 0.0062 24.5 1.0 26 126-151 232-257 (357)
4 d1e7la1 a.140.4.1 (A:104-157) 5.6 1.3E+02 0.0094 17.0 1.5 13 134-146 2-14 (54)
5 d1v53a1 c.77.1.1 (A:1-356) 3-i 5.4 97 0.0071 24.1 1.2 26 125-150 231-256 (356)
6 d2gola1 a.61.1.1 (A:7-107) HIV 5.3 89 0.0064 20.2 0.7 17 109-125 11-27 (101)
7 d1ecwa_ a.61.1.1 (A:) SIV matr 5.2 92 0.0067 20.5 0.7 16 110-125 13-28 (114)
8 d3e46a1 a.5.2.1 (A:157-198) Ub 4.8 97 0.0071 16.3 0.5 11 132-142 1-11 (42)
9 d1j32a_ c.67.1.1 (A:) Aspartat 4.6 2.2E+02 0.016 21.4 2.8 25 113-137 307-331 (388)
10 d1j46a_ a.21.1.1 (A:) SRY {Hum 4.4 2.9E+02 0.021 16.1 2.9 17 170-186 57-73 (85)
No 1
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=42 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.7
Q ss_pred ccccccCcCccCcccccchh
Q 029221 119 KEYKIPTSGLFDKVVCPHYL 138 (197)
Q Consensus 119 ~~y~iP~gglF~~vscPnY~ 138 (197)
.+..||..-+|+.+..+||+
T Consensus 75 ~~fdi~~~~l~eLi~AAnyL 94 (96)
T d2c9wc1 75 PEFPIAPEIALELLMAANFL 94 (96)
T ss_dssp CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhhh
Confidence 35668888888888888886
No 2
>d1y08a_ d.3.1.12 (A:) IgG-specific endopeptidase IdeS (Sib38) {Streptococcus pyogenes [TaxId: 1314]}
Probab=7.01 E-value=1.4e+02 Score=22.75 Aligned_cols=53 Identities=9% Similarity=0.180 Sum_probs=32.1
Q ss_pred cccccc---CcCccCcccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCC
Q 029221 119 KEYKIP---TSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRAWYLSKF-EDFPK 187 (197)
Q Consensus 119 ~~y~iP---~gglF~~vscPnY~~Eil~w~g~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~wY~~~F-~~yp~ 187 (197)
.-|+-| ..|+|+---..|+-.. -.+.+.++.||+.+..++.+-|.+.| +++|.
T Consensus 19 ~vy~ap~~~g~G~yD~nK~~n~~D~----------------n~CwAA~ASNmLhWWldqN~~~i~~ylk~~~~ 75 (291)
T d1y08a_ 19 DVFHAPYVANQGWYDITKTFNGKDD----------------LLSGAATAGNMLHWWFDQNKDQIKRYLEEHPE 75 (291)
T ss_dssp SCEEECCCTTSSCCCCCCCCCSSST----------------TCHHHHHHHHHHHHHHHHTHHHHHHHHHHCGG
T ss_pred ceEeccccCCCceeeccccCCCCcc----------------chhHHHHHHHHHHHHHHhcchHHHHHHhhCCc
Confidence 345444 3577777777773211 12345677899888777666666666 45553
No 3
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=5.72 E-value=86 Score=24.49 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred cCccCcccccchhhHHHHHHHHHHHh
Q 029221 126 SGLFDKVVCPHYLFEILGFWGIFFIA 151 (197)
Q Consensus 126 gglF~~vscPnY~~Eil~w~g~~l~~ 151 (197)
-+-|+.+-|||++|.|+.=++-.+..
T Consensus 232 P~~fdViv~~Nl~GDIlSDl~a~l~G 257 (357)
T d1a05a_ 232 PAQFDVLLTGNMFGDILSDEASQLTG 257 (357)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHTTS
T ss_pred cccccEEechHHHHHHHHHHHHHHhc
Confidence 45699999999999999998876653
No 4
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=5.63 E-value=1.3e+02 Score=17.04 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=9.7
Q ss_pred ccchhhHHHHHHH
Q 029221 134 CPHYLFEILGFWG 146 (197)
Q Consensus 134 cPnY~~Eil~w~g 146 (197)
||||..+..=|++
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 7888888777764
No 5
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]}
Probab=5.44 E-value=97 Score=24.05 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.0
Q ss_pred CcCccCcccccchhhHHHHHHHHHHH
Q 029221 125 TSGLFDKVVCPHYLFEILGFWGIFFI 150 (197)
Q Consensus 125 ~gglF~~vscPnY~~Eil~w~g~~l~ 150 (197)
+-+-|+.+.|||++|.|+.=++-.+.
T Consensus 231 ~P~~fdViv~~Nl~GDIlSDl~a~l~ 256 (356)
T d1v53a1 231 NPGQFDVIVTENMFGDILSDEASVIT 256 (356)
T ss_dssp CGGGCSEEEECHHHHHHHHHHHTTTT
T ss_pred cccccceeechHHHHHHHHHHHHHHh
Confidence 35559999999999999987766554
No 6
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=5.28 E-value=89 Score=20.15 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.6
Q ss_pred HHHhcccCCCccccccC
Q 029221 109 LLSKMRRNGEKEYKIPT 125 (197)
Q Consensus 109 ~L~~lR~~~~~~y~iP~ 125 (197)
.-.+||+.|.++|++-+
T Consensus 11 EkirLrpggKKkY~lKH 27 (101)
T d2gola1 11 EKIRLRPGGKKQYKLKH 27 (101)
T ss_dssp HHCBSSTTCSCBCCHHH
T ss_pred heeeecCCCCcchhhhh
Confidence 34578888888888654
No 7
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=5.15 E-value=92 Score=20.52 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=12.0
Q ss_pred HHhcccCCCccccccC
Q 029221 110 LSKMRRNGEKEYKIPT 125 (197)
Q Consensus 110 L~~lR~~~~~~y~iP~ 125 (197)
-.+||+.|.++|++-+
T Consensus 13 kirLRpggKKkY~lKH 28 (114)
T d1ecwa_ 13 KIRLRPGGKKKYMLKH 28 (114)
T ss_dssp TSBSSSSCSCBCCHHH
T ss_pred heeecCCCCcchhhhH
Confidence 4578888888888754
No 8
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=97 Score=16.26 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=7.3
Q ss_pred ccccchhhHHH
Q 029221 132 VVCPHYLFEIL 142 (197)
Q Consensus 132 vscPnY~~Eil 142 (197)
||+|.|+..|=
T Consensus 1 vsspeyt~kid 11 (42)
T d3e46a1 1 VSSPEYTKKIE 11 (42)
T ss_dssp CCCHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 56777776653
No 9
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}
Probab=4.56 E-value=2.2e+02 Score=21.41 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=17.7
Q ss_pred cccCCCccccccCcCccCcccccch
Q 029221 113 MRRNGEKEYKIPTSGLFDKVVCPHY 137 (197)
Q Consensus 113 lR~~~~~~y~iP~gglF~~vscPnY 137 (197)
|++.+.-+...|+||.|-++.+|+-
T Consensus 307 l~~~~g~~~~~p~gg~~l~~~l~~~ 331 (388)
T d1j32a_ 307 LNAMPGLECPKPDGAFYMFPSIAKT 331 (388)
T ss_dssp HHTCTTCBCCCCCBTTEECCBCGGG
T ss_pred HHhCCCCEecCCCceEEEEEECCCC
Confidence 3333334566789999999999864
No 10
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.41 E-value=2.9e+02 Score=16.08 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcccCC
Q 029221 170 RSYATRAWYLSKFEDFP 186 (197)
Q Consensus 170 ~a~~~~~wY~~~F~~yp 186 (197)
.|.+..+-|.+++++|.
T Consensus 57 ~A~~~k~~y~~~~~~yk 73 (85)
T d1j46a_ 57 EAQKLQAMHREKYPNYK 73 (85)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 35556677888888774
Done!