BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029223
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U28|C Chain C, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|C Chain C, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 114
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 73/93 (78%)
Query: 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFS 104
GPP V+E+ +FLH CEGD V + N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+
Sbjct: 22 GPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFT 81
Query: 105 VKMMEGIVATSYSLGDKFYIDPSKLLPLARFLP 137
+K +G+ ATS+ GDKFYI KLLP+ RFLP
Sbjct: 82 IKCGDGVQATSFKEGDKFYIAADKLLPIERFLP 114
>pdb|2V3M|A Chain A, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|B Chain B, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|C Chain C, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|D Chain D, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|E Chain E, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|F Chain F, Structure Of The Gar1 Domain Of Naf1
Length = 131
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 82 LQNKTQIGKVDEIFGPINESYFSVKM 107
L+++T IG + E+FGP+ ++ +K+
Sbjct: 65 LEDRTLIGXLTEVFGPLQNPFYRIKL 90
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 88 IGKVDEIFGPINESYFSVKMMEGIVATSYS-LGDKFYIDPSKL 129
+ K+ E Y ++MM + T Y LGD F DP KL
Sbjct: 318 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL 360
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
Query: 83 QNKTQIGKVDEIFGPI--NESYFSVKMME 109
+ KTQI K+D+IF PI N+S++++ +++
Sbjct: 93 RKKTQIDKLDKIFTPINLNQSHWALGIID 121
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
Query: 83 QNKTQIGKVDEIFGPI--NESYFSVKMME 109
+ KTQI K+D+IF PI N+S++++ +++
Sbjct: 93 RKKTQIDKLDKIFTPINLNQSHWALGIID 121
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 88 IGKVDEIFGPINESYFSVKMMEGIVATSY-SLGDKFYIDPSKL 129
+ K+ E Y ++MM + T Y LGD F DP KL
Sbjct: 247 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL 289
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 88 IGKVDEIFGPINESYFSVKMMEGIVATSY-SLGDKFYIDPSKL 129
+ K+ E Y ++MM + T Y LGD F DP KL
Sbjct: 337 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,184,163
Number of Sequences: 62578
Number of extensions: 109778
Number of successful extensions: 225
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)