Query 029223
Match_columns 197
No_of_seqs 197 out of 488
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u28_C H/ACA ribonucleoprotein 100.0 1.2E-40 4.2E-45 258.5 9.0 97 41-137 18-114 (114)
2 2ey4_C Small nucleolar RNP sim 99.9 1.7E-25 6E-30 164.8 6.7 76 47-126 5-81 (82)
3 2hvy_B GAR1, small nucleolar R 99.9 2.5E-24 8.7E-29 164.9 9.5 78 47-128 5-83 (104)
4 2eqn_A Hypothetical protein LO 99.9 1.4E-21 5E-26 149.1 8.8 80 46-125 20-103 (103)
5 2v3m_A NAF1; ribosomal protein 99.8 1.9E-20 6.7E-25 148.4 7.4 83 46-128 26-115 (131)
6 1b34_A Protein (small nuclear 97.5 4.8E-05 1.6E-09 58.6 2.8 71 65-141 7-89 (119)
7 1wez_A HnRNP H', FTP-3, hetero 96.6 0.0017 5.8E-08 47.2 3.7 47 42-89 9-56 (102)
8 1h2v_Z 20 kDa nuclear CAP bind 96.2 0.00074 2.5E-08 52.0 -0.0 41 44-84 35-75 (156)
9 3pgw_S U1-70K; protein-RNA com 96.2 0.0016 5.5E-08 59.3 2.0 39 45-83 99-137 (437)
10 2dh8_A DAZ-associated protein 96.2 0.0021 7.3E-08 45.9 2.3 86 42-141 10-98 (105)
11 2lcw_A RNA-binding protein FUS 95.1 0.00088 3E-08 49.1 0.0 32 43-74 2-33 (116)
12 1x4c_A Splicing factor, argini 96.0 0.0027 9.3E-08 46.0 2.2 38 44-81 11-48 (108)
13 2cqd_A RNA-binding region cont 95.8 0.0061 2.1E-07 44.3 3.4 40 42-81 11-50 (116)
14 2cq3_A RNA-binding protein 9; 95.8 0.0021 7.2E-08 45.8 0.6 88 41-141 8-96 (103)
15 1why_A Hypothetical protein ri 95.7 0.0011 3.7E-08 46.9 -1.0 31 42-72 11-41 (97)
16 2dnz_A Probable RNA-binding pr 95.7 0.0021 7.2E-08 44.9 0.4 38 45-82 2-39 (95)
17 3ex7_B RNA-binding protein 8A; 95.6 0.00088 3E-08 49.5 -1.9 30 43-72 17-46 (126)
18 1u6f_A Tcubp1, RNA-binding pro 95.6 0.0026 8.9E-08 47.7 0.7 84 45-141 39-125 (139)
19 1x4a_A Splicing factor, argini 95.6 0.0075 2.6E-07 43.4 3.0 31 43-73 17-47 (109)
20 2hgn_A Heterogeneous nuclear r 95.5 0.00084 2.9E-08 52.3 -2.4 32 42-73 40-71 (139)
21 2cq0_A Eukaryotic translation 95.4 0.0076 2.6E-07 42.8 2.5 40 43-82 10-49 (103)
22 2dgv_A HnRNP M, heterogeneous 95.3 0.0033 1.1E-07 43.6 0.4 46 44-89 4-49 (92)
23 2dgw_A Probable RNA-binding pr 95.3 0.0068 2.3E-07 42.1 1.9 83 43-140 5-89 (91)
24 1x5t_A Splicing factor 3B subu 95.3 0.0036 1.2E-07 43.8 0.5 86 45-141 2-89 (96)
25 2cq1_A PTB-like protein L; RRM 95.3 0.0036 1.2E-07 46.0 0.4 30 42-71 9-38 (101)
26 1wf0_A TDP-43, TAR DNA-binding 95.3 0.0057 2E-07 42.3 1.4 80 45-141 2-81 (88)
27 2cqb_A Peptidyl-prolyl CIS-tra 95.2 0.0031 1.1E-07 44.7 -0.1 89 42-141 6-95 (102)
28 1wex_A Hypothetical protein (r 95.2 0.0061 2.1E-07 44.9 1.4 30 43-72 10-39 (104)
29 2cpf_A RNA binding motif prote 95.0 0.0026 9E-08 44.8 -1.1 38 45-82 2-39 (98)
30 1sjq_A Polypyrimidine tract-bi 95.0 0.0024 8.3E-08 47.9 -1.4 83 44-141 12-95 (105)
31 3r27_A HnRNP L, heterogeneous 94.9 0.0015 5.2E-08 48.6 -2.5 31 43-73 16-46 (100)
32 2dgu_A Heterogeneous nuclear r 94.9 0.0059 2E-07 43.6 0.7 28 44-71 7-34 (103)
33 2d9p_A Polyadenylate-binding p 94.9 0.0078 2.7E-07 42.8 1.4 42 42-83 9-50 (103)
34 1x5s_A Cold-inducible RNA-bind 94.9 0.0029 9.8E-08 44.9 -1.1 40 43-82 7-46 (102)
35 2dgs_A DAZ-associated protein 94.9 0.0045 1.5E-07 43.7 -0.0 39 43-81 5-43 (99)
36 2cpz_A CUG triplet repeat RNA- 94.9 0.0059 2E-07 44.4 0.6 42 43-84 20-61 (115)
37 2y9a_D Small nuclear ribonucle 94.7 0.0087 3E-07 46.6 1.2 68 63-136 8-83 (126)
38 2lxi_A RNA-binding protein 10; 94.7 0.0018 6.3E-08 45.9 -2.5 82 48-141 1-86 (91)
39 2dnm_A SRP46 splicing factor; 94.7 0.016 5.5E-07 41.1 2.4 31 43-73 8-38 (103)
40 2dng_A Eukaryotic translation 94.7 0.012 4.1E-07 41.9 1.7 84 42-140 9-95 (103)
41 4f25_A Polyadenylate-binding p 94.6 0.0032 1.1E-07 46.3 -1.4 42 48-89 5-46 (115)
42 1whw_A Hypothetical protein ri 94.6 0.011 3.7E-07 41.6 1.4 29 44-72 4-32 (99)
43 2dhg_A TRNA selenocysteine ass 94.5 0.0092 3.2E-07 42.3 0.9 86 43-141 4-93 (104)
44 2fc8_A NCL protein; structure 94.5 0.007 2.4E-07 42.8 0.1 30 42-71 9-38 (102)
45 1x4b_A Heterogeneous nuclear r 94.5 0.0068 2.3E-07 44.1 0.0 85 46-141 25-109 (116)
46 2do0_A HnRNP M, heterogeneous 94.4 0.011 3.6E-07 42.7 1.0 42 41-82 8-49 (114)
47 2hgl_A HNRPF protein, heteroge 94.4 0.012 4E-07 45.5 1.2 47 43-89 39-89 (136)
48 2cpy_A RNA-binding protein 12; 94.4 0.0057 1.9E-07 44.8 -0.5 84 41-138 8-94 (114)
49 2ad9_A Polypyrimidine tract-bi 94.4 0.0026 8.7E-08 48.6 -2.6 40 42-81 25-64 (119)
50 2dgt_A RNA-binding protein 30; 94.4 0.0095 3.3E-07 41.5 0.6 31 42-72 4-34 (92)
51 2div_A TRNA selenocysteine ass 94.3 0.013 4.4E-07 41.2 1.2 42 43-84 4-46 (99)
52 1x4h_A RNA-binding protein 28; 94.3 0.0073 2.5E-07 43.3 -0.1 39 43-81 10-48 (111)
53 3bs9_A Nucleolysin TIA-1 isofo 94.2 0.0033 1.1E-07 43.1 -2.0 38 45-82 3-40 (87)
54 1x4d_A Matrin 3; structural ge 94.2 0.0079 2.7E-07 44.4 -0.1 31 42-72 9-40 (102)
55 2cqi_A Nucleolysin TIAR; RNA r 94.1 0.0074 2.5E-07 42.9 -0.4 42 42-83 9-50 (103)
56 2cqg_A TDP-43, TAR DNA-binding 94.1 0.019 6.5E-07 40.7 1.8 86 42-141 9-96 (103)
57 2dnq_A RNA-binding protein 4B; 94.1 0.01 3.5E-07 41.2 0.3 30 43-72 3-32 (90)
58 2cpj_A Non-POU domain-containi 94.0 0.0087 3E-07 42.3 -0.3 32 42-73 9-40 (99)
59 2fc9_A NCL protein; structure 94.0 0.012 4E-07 41.7 0.4 30 42-71 9-38 (101)
60 2do4_A Squamous cell carcinoma 93.9 0.01 3.5E-07 41.9 0.0 41 42-82 11-51 (100)
61 2cpx_A Hypothetical protein FL 93.9 0.009 3.1E-07 43.2 -0.3 29 43-71 20-48 (115)
62 1x4f_A Matrin 3; structural ge 93.9 0.0066 2.3E-07 45.8 -1.1 38 43-80 20-58 (112)
63 1wi8_A EIF-4B, eukaryotic tran 93.8 0.014 5E-07 41.5 0.7 30 43-72 10-39 (104)
64 2cqp_A RNA-binding protein 12; 93.8 0.025 8.6E-07 39.6 1.9 39 44-82 11-49 (98)
65 2dnh_A Bruno-like 5, RNA bindi 93.8 0.017 5.8E-07 41.0 1.0 40 43-82 10-49 (105)
66 1wel_A RNA-binding protein 12; 93.7 0.013 4.6E-07 43.3 0.4 40 43-82 20-59 (124)
67 2dgo_A Cytotoxic granule-assoc 93.7 0.014 5E-07 42.1 0.5 42 41-82 8-49 (115)
68 2cph_A RNA binding motif prote 93.5 0.0056 1.9E-07 43.6 -2.0 31 42-72 9-39 (107)
69 2kxn_B Transformer-2 protein h 93.3 0.0095 3.2E-07 45.0 -1.1 41 42-82 40-80 (129)
70 2cpi_A CCR4-NOT transcription 93.3 0.014 4.8E-07 42.4 -0.2 86 43-141 10-104 (111)
71 3d2w_A TAR DNA-binding protein 93.3 0.01 3.5E-07 41.9 -0.9 80 43-139 6-85 (89)
72 1x5u_A Splicing factor 3B subu 93.2 0.0098 3.3E-07 42.3 -1.1 32 42-73 9-40 (105)
73 2err_A Ataxin-2-binding protei 93.2 0.012 4.2E-07 42.7 -0.6 41 43-83 24-64 (109)
74 2dnp_A RNA-binding protein 14; 93.2 0.0079 2.7E-07 41.8 -1.6 30 42-71 3-32 (90)
75 3s8s_A Histone-lysine N-methyl 93.1 0.011 3.8E-07 43.5 -1.0 41 45-85 3-43 (110)
76 2rs2_A Musashi-1, RNA-binding 93.0 0.011 3.6E-07 43.1 -1.2 40 43-82 20-59 (109)
77 2cpe_A RNA-binding protein EWS 93.0 0.022 7.5E-07 41.0 0.5 32 43-74 10-41 (113)
78 2ek1_A RNA-binding protein 12; 92.9 0.014 4.9E-07 40.5 -0.6 39 44-82 11-49 (95)
79 1x4g_A Nucleolysin TIAR; struc 92.9 0.011 3.8E-07 42.6 -1.2 28 44-71 21-48 (109)
80 1p27_B RNA-binding protein 8A; 92.8 0.0068 2.3E-07 43.2 -2.4 40 44-83 19-58 (106)
81 2dgx_A KIAA0430 protein; RRM d 92.8 0.0089 3.1E-07 42.3 -1.8 41 44-84 5-49 (96)
82 2db1_A Heterogeneous nuclear r 92.6 0.031 1E-06 41.3 0.8 30 43-72 12-41 (118)
83 1wg5_A Heterogeneous nuclear r 92.2 0.023 7.8E-07 40.8 -0.4 31 43-73 10-40 (104)
84 2dis_A Unnamed protein product 92.2 0.01 3.6E-07 42.4 -2.2 30 44-73 4-33 (109)
85 2j76_E EIF-4B, EIF4B, eukaryot 92.1 0.04 1.4E-06 39.1 0.9 29 44-72 15-43 (100)
86 2dgp_A Bruno-like 4, RNA bindi 92.1 0.013 4.3E-07 41.8 -1.8 32 42-73 7-38 (106)
87 2m2b_A RNA-binding protein 10; 92.1 0.013 4.4E-07 43.8 -1.8 42 43-84 18-61 (131)
88 2kvi_A Nuclear polyadenylated 92.0 0.013 4.3E-07 41.4 -1.9 31 43-73 5-36 (96)
89 2hgm_A HNRPF protein, heteroge 92.0 0.015 5.1E-07 44.6 -1.6 30 43-72 37-66 (126)
90 1fjc_A Nucleolin RBD2, protein 91.9 0.038 1.3E-06 38.5 0.6 29 43-71 11-39 (96)
91 2xs2_A Deleted in azoospermia- 91.8 0.017 5.9E-07 40.8 -1.3 39 45-83 6-44 (102)
92 2x1f_A MRNA 3'-END-processing 91.8 0.017 5.7E-07 40.6 -1.4 27 47-73 1-27 (96)
93 3beg_B Splicing factor, argini 91.8 0.035 1.2E-06 40.7 0.2 27 47-73 15-41 (115)
94 1wf1_A RNA-binding protein RAL 91.7 0.034 1.2E-06 40.0 0.2 31 43-73 22-53 (110)
95 2cpd_A Apobec-1 stimulating pr 91.7 0.032 1.1E-06 39.3 -0.0 30 43-72 10-39 (99)
96 2lkz_A RNA-binding protein 5; 91.7 0.0062 2.1E-07 44.1 -3.9 38 46-83 7-46 (95)
97 2e5i_A Heterogeneous nuclear r 91.6 0.013 4.6E-07 44.8 -2.2 41 42-82 17-59 (124)
98 1rk8_A CG8781-PA, CG8781-PA pr 91.4 0.019 6.6E-07 44.6 -1.6 40 44-83 68-107 (165)
99 2cqh_A IGF-II mRNA-binding pro 91.2 0.022 7.5E-07 39.6 -1.3 30 44-73 4-33 (93)
100 2f3j_A RNA and export factor b 91.2 0.06 2.1E-06 42.8 1.1 37 46-82 86-122 (177)
101 2e5g_A U6 snRNA-specific termi 91.1 0.13 4.6E-06 35.7 2.8 29 45-73 5-33 (94)
102 2jrs_A RNA-binding protein 39; 90.9 0.04 1.4E-06 40.0 -0.2 40 43-82 21-60 (108)
103 2e5h_A Zinc finger CCHC-type a 90.9 0.079 2.7E-06 36.6 1.3 33 42-74 10-42 (94)
104 2la4_A Nuclear and cytoplasmic 90.8 0.04 1.4E-06 38.8 -0.2 29 45-73 24-52 (101)
105 1oo0_B CG8781-PA, drosophila Y 90.8 0.011 3.6E-07 42.5 -3.4 31 43-73 21-51 (110)
106 3s7r_A Heterogeneous nuclear r 90.7 0.043 1.5E-06 37.5 -0.2 41 43-83 6-46 (87)
107 2dha_A FLJ20171 protein; RRM d 90.4 0.036 1.2E-06 42.0 -0.8 28 45-72 20-47 (123)
108 1l3k_A Heterogeneous nuclear r 90.3 0.039 1.3E-06 42.5 -0.8 83 46-141 102-186 (196)
109 2lea_A Serine/arginine-rich sp 90.1 0.031 1.1E-06 42.4 -1.5 35 46-80 45-79 (135)
110 2jvo_A Nucleolar protein 3; nu 89.9 0.036 1.2E-06 40.3 -1.2 32 43-74 26-57 (108)
111 2e44_A Insulin-like growth fac 89.9 0.026 9E-07 39.3 -1.8 36 43-78 10-45 (96)
112 2fy1_A RNA-binding motif prote 89.9 0.066 2.2E-06 39.3 0.2 38 45-82 4-41 (116)
113 2ytc_A PRE-mRNA-splicing facto 89.8 0.029 1E-06 38.1 -1.6 30 43-72 7-36 (85)
114 1fj7_A Nucleolin RBD1, protein 89.6 0.0098 3.3E-07 42.1 -4.4 27 46-72 15-41 (101)
115 3zzy_A Polypyrimidine tract-bi 89.6 0.031 1.1E-06 43.3 -1.8 42 43-84 21-64 (130)
116 2e5j_A Methenyltetrahydrofolat 89.5 0.047 1.6E-06 38.4 -0.8 31 43-73 14-44 (97)
117 1x5p_A Negative elongation fac 89.1 0.075 2.6E-06 37.3 0.1 28 43-72 10-37 (97)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.0 0.12 4.2E-06 38.0 1.2 30 43-72 58-87 (140)
119 4a8x_A RNA-binding protein wit 89.0 0.025 8.4E-07 38.6 -2.5 28 45-72 1-28 (88)
120 2khc_A Testis-specific RNP-typ 88.9 0.035 1.2E-06 40.2 -1.9 30 43-72 35-64 (118)
121 3md1_A Nuclear and cytoplasmic 88.9 0.047 1.6E-06 36.8 -1.2 36 48-83 1-36 (83)
122 2i2y_A Fusion protein consists 88.9 0.047 1.6E-06 41.4 -1.3 30 43-72 68-97 (150)
123 1l3k_A Heterogeneous nuclear r 88.5 0.048 1.6E-06 41.9 -1.4 40 44-83 9-48 (196)
124 2lmi_A GRSF-1, G-rich sequence 88.4 0.058 2E-06 38.8 -0.9 30 43-72 6-35 (107)
125 3q2s_C Cleavage and polyadenyl 88.4 0.038 1.3E-06 45.8 -2.3 37 48-84 68-106 (229)
126 2cqc_A Arginine/serine-rich sp 88.3 0.13 4.6E-06 35.4 0.9 42 41-82 8-49 (95)
127 2yh0_A Splicing factor U2AF 65 88.2 0.1 3.5E-06 40.1 0.2 39 45-83 111-149 (198)
128 3ucg_A Polyadenylate-binding p 88.0 0.077 2.6E-06 36.2 -0.5 36 47-82 5-40 (89)
129 2ywk_A Putative RNA-binding pr 88.0 0.061 2.1E-06 37.2 -1.1 39 43-81 11-49 (95)
130 3egn_A RNA-binding protein 40; 88.0 0.061 2.1E-06 40.4 -1.2 31 43-73 40-70 (143)
131 2qfj_A FBP-interacting repress 87.6 0.082 2.8E-06 41.2 -0.6 38 46-83 123-160 (216)
132 2cq2_A Hypothetical protein LO 87.5 0.093 3.2E-06 39.7 -0.4 30 42-71 19-50 (114)
133 3p5t_L Cleavage and polyadenyl 87.2 0.039 1.3E-06 38.4 -2.5 36 49-84 2-39 (90)
134 2hzc_A Splicing factor U2AF 65 87.1 0.031 1.1E-06 38.1 -3.0 28 45-72 3-30 (87)
135 4f02_A Polyadenylate-binding p 87.1 0.096 3.3E-06 41.8 -0.5 40 44-83 11-50 (213)
136 2jwn_A Embryonic polyadenylate 87.1 0.076 2.6E-06 38.7 -1.1 36 47-82 35-70 (124)
137 1x4e_A RNA binding motif, sing 87.0 0.17 5.9E-06 34.2 0.8 38 45-82 2-39 (85)
138 2diu_A KIAA0430 protein; struc 86.9 0.081 2.8E-06 39.5 -1.0 24 43-66 3-27 (96)
139 1nu4_A U1A RNA binding domain; 86.9 0.055 1.9E-06 37.6 -1.8 28 44-71 4-35 (97)
140 2xnq_A Nuclear polyadenylated 86.8 0.064 2.2E-06 38.1 -1.6 29 43-71 17-46 (97)
141 3tyt_A Heterogeneous nuclear r 86.8 0.051 1.7E-06 44.0 -2.4 40 45-84 120-161 (205)
142 2cjk_A Nuclear polyadenylated 86.7 0.064 2.2E-06 40.1 -1.7 80 46-138 85-166 (167)
143 1x5o_A RNA binding motif, sing 85.2 0.18 6E-06 36.2 0.1 41 43-83 20-60 (114)
144 2kt5_A RNA and export factor-b 84.5 0.13 4.3E-06 37.7 -1.0 39 44-82 31-69 (124)
145 2jvr_A Nucleolar protein 3; RN 84.4 0.043 1.5E-06 40.8 -3.6 29 45-73 25-53 (111)
146 2hvz_A Splicing factor, argini 84.3 0.074 2.5E-06 37.4 -2.2 26 49-74 1-26 (101)
147 1sjr_A Polypyrimidine tract-bi 84.3 0.083 2.8E-06 42.6 -2.2 39 45-83 41-81 (164)
148 1p1t_A Cleavage stimulation fa 84.1 0.057 2E-06 38.0 -2.9 38 46-83 6-43 (104)
149 2la6_A RNA-binding protein FUS 84.0 0.31 1.1E-05 34.0 1.0 35 43-77 8-42 (99)
150 2dnn_A RNA-binding protein 12; 83.9 0.08 2.7E-06 39.1 -2.3 33 48-81 16-48 (109)
151 2kn4_A Immunoglobulin G-bindin 83.8 0.061 2.1E-06 40.8 -3.1 29 44-72 66-94 (158)
152 4fxv_A ELAV-like protein 1; RN 83.7 0.078 2.7E-06 38.0 -2.4 37 47-83 18-54 (99)
153 2nlw_A Eukaryotic translation 83.6 0.16 5.6E-06 36.3 -0.7 26 47-72 14-45 (105)
154 4f02_A Polyadenylate-binding p 83.4 0.098 3.4E-06 41.8 -2.1 43 47-89 102-144 (213)
155 3pgw_A U1-A; protein-RNA compl 83.2 0.21 7.3E-06 41.0 -0.2 38 44-81 203-240 (282)
156 2dit_A HIV TAT specific factor 83.2 0.26 9E-06 35.6 0.3 20 42-61 9-28 (112)
157 2ki2_A SS-DNA binding protein 83.1 0.081 2.8E-06 36.3 -2.4 34 49-82 2-35 (90)
158 1fje_B Nucleolin RBD12, protei 82.9 0.2 6.9E-06 37.8 -0.4 79 44-139 95-175 (175)
159 2yh0_A Splicing factor U2AF 65 82.4 0.14 4.8E-06 39.3 -1.5 26 46-71 2-27 (198)
160 3n9u_C Cleavage and polyadenyl 82.2 0.068 2.3E-06 41.7 -3.4 38 47-84 54-93 (156)
161 3lqv_A PRE-mRNA branch site pr 81.5 0.29 9.9E-06 35.1 -0.0 38 44-81 4-41 (115)
162 1uaw_A Mouse-musashi-1; RNP-ty 80.8 0.26 8.9E-06 32.5 -0.5 34 50-83 2-35 (77)
163 3mdf_A Peptidyl-prolyl CIS-tra 79.8 0.23 7.7E-06 33.4 -1.1 29 44-72 3-31 (85)
164 2krb_A Eukaryotic translation 79.7 0.28 9.6E-06 33.1 -0.6 25 48-72 1-31 (81)
165 2ghp_A U4/U6 snRNA-associated 79.6 0.25 8.7E-06 40.7 -1.0 82 44-139 206-292 (292)
166 2cq4_A RNA binding motif prote 79.4 0.14 4.7E-06 36.9 -2.4 34 49-82 26-59 (114)
167 4emh_A Probable U6 snRNA-assoc 78.6 2.2 7.6E-05 31.8 4.1 39 64-107 20-59 (105)
168 3tyt_A Heterogeneous nuclear r 77.7 0.39 1.4E-05 38.6 -0.4 29 45-73 1-30 (205)
169 1d3b_A Protein (small nuclear 77.6 1.8 6.2E-05 30.0 3.1 39 64-107 9-48 (75)
170 3ulh_A THO complex subunit 4; 77.6 0.43 1.5E-05 33.6 -0.1 40 43-82 24-63 (107)
171 3tht_A Alkylated DNA repair pr 77.2 0.54 1.8E-05 41.8 0.3 29 43-71 13-43 (345)
172 2adc_A Polypyrimidine tract-bi 77.2 0.18 6.3E-06 40.6 -2.5 31 43-73 29-60 (229)
173 2a3j_A U1 small nuclear ribonu 77.1 0.18 6E-06 38.3 -2.5 29 43-71 24-56 (127)
174 1fxl_A Paraneoplastic encephal 76.8 0.29 9.9E-06 36.1 -1.3 37 47-83 1-37 (167)
175 3pgw_A U1-A; protein-RNA compl 75.9 0.57 1.9E-05 38.4 0.1 29 43-71 4-36 (282)
176 1b7f_A Protein (SXL-lethal pro 75.5 0.18 6E-06 37.6 -2.9 28 47-74 2-29 (168)
177 2dnl_A Cytoplasmic polyadenyla 75.4 0.53 1.8E-05 34.0 -0.2 31 45-75 5-35 (114)
178 2g4b_A Splicing factor U2AF 65 75.3 0.24 8.1E-06 37.1 -2.2 26 47-72 3-28 (172)
179 1s79_A Lupus LA protein; RRM, 75.1 0.49 1.7E-05 34.2 -0.5 40 43-82 6-45 (103)
180 3sde_A Paraspeckle component 1 74.0 0.29 9.9E-06 40.3 -2.2 28 45-72 19-46 (261)
181 2adc_A Polypyrimidine tract-bi 73.5 0.32 1.1E-05 39.1 -2.0 30 43-72 146-175 (229)
182 1qm9_A Polypyrimidine tract-bi 72.7 0.27 9.3E-06 38.0 -2.5 31 43-73 115-145 (198)
183 2wbr_A GW182, gawky, LD47780P; 72.5 0.37 1.3E-05 35.3 -1.7 38 45-82 4-41 (89)
184 1whx_A Hypothetical protein ri 72.3 0.56 1.9E-05 33.9 -0.7 26 46-71 8-33 (111)
185 2ghp_A U4/U6 snRNA-associated 71.7 0.42 1.4E-05 39.3 -1.7 41 44-84 37-77 (292)
186 2qfj_A FBP-interacting repress 68.1 0.3 1E-05 37.9 -3.2 36 46-81 26-61 (216)
187 1iqt_A AUF1, heterogeneous nuc 67.3 0.29 9.9E-06 32.2 -3.0 23 50-72 1-23 (75)
188 2mss_A Protein (musashi1); RNA 66.9 0.44 1.5E-05 31.3 -2.2 25 50-74 1-25 (75)
189 2bz2_A Negative elongation fac 66.8 1.2 4E-05 33.0 -0.0 29 43-73 34-62 (121)
190 2g4b_A Splicing factor U2AF 65 66.8 0.76 2.6E-05 34.3 -1.1 39 45-83 91-129 (172)
191 1wg1_A KIAA1579 protein, homol 66.5 1.4 4.9E-05 30.0 0.4 34 46-80 3-36 (88)
192 3u28_C H/ACA ribonucleoprotein 65.8 0.43 1.5E-05 36.7 -2.6 69 60-131 45-114 (114)
193 2pi2_E Replication protein A 1 65.3 7 0.00024 30.6 4.2 49 48-101 44-97 (142)
194 2cjk_A Nuclear polyadenylated 64.6 0.69 2.4E-05 34.3 -1.7 26 47-72 2-27 (167)
195 3nmr_A Cugbp ELAV-like family 63.6 1.1 3.9E-05 33.2 -0.6 38 47-84 2-39 (175)
196 3smz_A Protein raver-1, ribonu 62.5 1.7 5.7E-05 35.5 0.2 39 44-82 180-219 (284)
197 1fje_B Nucleolin RBD12, protei 61.0 0.22 7.6E-06 37.6 -5.1 28 44-71 9-36 (175)
198 3u1l_A PRE-mRNA-splicing facto 60.0 0.78 2.7E-05 38.8 -2.4 27 45-71 131-166 (240)
199 3md3_A Nuclear and cytoplasmic 59.5 1.1 3.8E-05 32.8 -1.3 34 49-82 1-34 (166)
200 2f1l_A 16S rRNA processing pro 55.9 16 0.00056 29.4 5.0 35 75-109 118-152 (187)
201 3ns6_A Eukaryotic translation 55.3 1 3.6E-05 31.7 -2.0 35 47-81 5-45 (100)
202 2kk4_A Uncharacterized protein 54.8 16 0.00055 26.7 4.2 41 81-125 11-56 (95)
203 1pm3_A MTH1895; unknown functi 54.3 20 0.0007 25.8 4.9 25 76-100 28-52 (97)
204 3md3_A Nuclear and cytoplasmic 53.4 2.9 0.0001 30.5 0.1 41 43-83 82-122 (166)
205 1fxl_A Paraneoplastic encephal 52.3 2 6.9E-05 31.4 -0.9 39 45-83 85-123 (167)
206 3kdf_A Replication protein A 1 52.0 17 0.00058 27.5 4.2 49 48-101 23-76 (121)
207 3pgw_B SM B; protein-RNA compl 51.7 13 0.00044 31.6 3.8 37 64-105 8-45 (231)
208 1m5q_A SMAP3, small nuclear ri 50.3 16 0.00054 28.1 3.9 39 67-110 7-46 (130)
209 2f1l_A 16S rRNA processing pro 49.0 34 0.0012 27.5 5.9 87 44-132 14-108 (187)
210 3h9n_A Ribosome maturation fac 47.3 22 0.00076 28.2 4.4 34 75-108 100-133 (177)
211 1qm9_A Polypyrimidine tract-bi 46.4 1.8 6E-05 33.3 -2.2 26 48-73 3-29 (198)
212 3ahu_A Protein HFQ; SM-like mo 46.4 8.7 0.0003 27.4 1.7 35 59-96 10-45 (78)
213 4emk_A U6 snRNA-associated SM- 45.1 13 0.00043 27.1 2.4 39 63-106 23-62 (94)
214 4gop_A Putative uncharacterize 43.8 61 0.0021 24.0 6.2 58 47-109 18-83 (114)
215 1b7f_A Protein (SXL-lethal pro 42.8 5.9 0.0002 29.0 0.3 39 44-82 85-123 (168)
216 3smz_A Protein raver-1, ribonu 42.6 5.1 0.00017 32.6 -0.1 38 45-82 92-129 (284)
217 2dnr_A Synaptojanin-1; RRM dom 42.1 6.6 0.00023 28.7 0.5 15 43-57 2-16 (91)
218 2ylb_A Protein HFQ; RNA-bindin 40.3 13 0.00044 26.2 1.7 34 60-96 9-43 (74)
219 2dyi_A Probable 16S rRNA-proce 39.8 35 0.0012 26.7 4.5 33 76-109 95-127 (162)
220 1n9r_A SMF, small nuclear ribo 39.7 25 0.00085 25.2 3.3 38 65-107 26-65 (93)
221 3nmr_A Cugbp ELAV-like family 37.2 6.1 0.00021 29.1 -0.4 37 45-81 92-128 (175)
222 1u1s_A HFQ protein; SM-like ba 37.0 20 0.00068 25.8 2.4 33 61-96 8-41 (82)
223 1h64_1 SnRNP SM-like protein; 37.0 23 0.00077 23.9 2.6 38 65-107 9-47 (75)
224 3s6n_F Small nuclear ribonucle 36.9 19 0.00063 25.4 2.2 38 64-106 10-48 (86)
225 1i4k_A Putative snRNP SM-like 36.6 22 0.00076 24.1 2.5 38 65-107 9-47 (77)
226 2voo_A Lupus LA protein; RNA-b 36.5 4.2 0.00014 32.3 -1.5 35 48-82 109-143 (193)
227 1rzh_H Reaction center protein 36.1 45 0.0015 28.7 4.9 32 76-107 149-183 (260)
228 2qgg_A 16S rRNA-processing pro 35.5 42 0.0014 26.7 4.4 32 76-107 110-145 (182)
229 1ljo_A Archaeal SM-like protei 35.2 22 0.00074 24.2 2.3 39 64-107 9-49 (77)
230 3sde_A Paraspeckle component 1 35.0 7.3 0.00025 31.7 -0.3 38 46-83 94-131 (261)
231 2j8a_A Histone-lysine N-methyl 35.0 13 0.00044 29.2 1.2 41 49-89 3-49 (136)
232 1th7_A SnRNP-2, small nuclear 33.5 24 0.00081 24.3 2.3 39 64-107 13-52 (81)
233 1mgq_A SM-like protein; LSM, R 33.4 25 0.00087 24.4 2.4 39 64-107 19-58 (83)
234 2wjn_H Reaction center protein 33.4 54 0.0018 28.2 4.9 32 76-107 153-187 (258)
235 2y90_A Protein HFQ; RNA-bindin 32.4 22 0.00074 26.7 2.0 34 60-96 9-43 (104)
236 3htr_A Uncharacterized PRC-bar 32.1 34 0.0012 25.4 3.1 32 76-107 21-55 (120)
237 2dyi_A Probable 16S rRNA-proce 31.4 1.2E+02 0.004 23.6 6.3 78 50-132 3-84 (162)
238 4emk_B U6 snRNA-associated SM- 30.8 25 0.00086 23.9 2.0 38 64-106 8-46 (75)
239 1eys_H Photosynthetic reaction 29.3 66 0.0023 27.6 4.8 34 75-108 151-187 (259)
240 2qqr_A JMJC domain-containing 29.1 61 0.0021 24.6 4.1 54 73-131 63-118 (118)
241 3s6n_G Small nuclear ribonucle 28.0 67 0.0023 21.7 3.8 40 63-107 7-47 (76)
242 4he6_A Peptidase family U32; u 27.2 75 0.0026 21.9 4.1 48 78-125 22-74 (89)
243 1i8f_A Putative snRNP SM-like 25.6 35 0.0012 23.5 2.0 39 64-107 15-54 (81)
244 2jys_A Protease/reverse transc 25.0 16 0.00054 27.4 0.1 57 80-139 35-97 (107)
245 3h43_A Proteasome-activating n 25.0 1.2E+02 0.0042 21.2 4.9 30 107-137 47-76 (85)
246 1owx_A Lupus LA protein, SS-B, 24.9 25 0.00084 26.6 1.2 28 44-71 14-42 (121)
247 3kf8_B Protein TEN1; OB fold; 24.9 1.3E+02 0.0045 23.1 5.3 27 42-68 18-44 (123)
248 2qgg_A 16S rRNA-processing pro 24.5 2.6E+02 0.0088 21.9 7.3 86 45-132 6-99 (182)
249 3ue2_A Poly(U)-binding-splicin 24.0 11 0.00039 27.7 -0.9 15 46-60 18-32 (118)
250 2qtx_A Uncharacterized protein 21.6 64 0.0022 22.5 2.7 24 70-96 23-47 (71)
251 3bw1_A SMX4 protein, U6 snRNA- 21.6 52 0.0018 23.5 2.3 39 63-106 13-52 (96)
252 3u5c_h Suppressor protein STM1 21.2 20 0.00069 31.1 0.0 10 127-136 204-214 (273)
253 2xdp_A Lysine-specific demethy 20.7 69 0.0024 24.5 2.9 56 72-132 63-120 (123)
254 1kq1_A HFQ, HOST factor for Q 20.4 29 0.001 24.5 0.7 34 60-96 7-41 (77)
255 1xe1_A Hypothetical protein PF 20.2 1.8E+02 0.0063 21.9 5.2 74 45-125 32-114 (116)
No 1
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=100.00 E-value=1.2e-40 Score=258.47 Aligned_cols=97 Identities=61% Similarity=1.090 Sum_probs=91.0
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCc
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGD 120 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~Gd 120 (197)
++|++||++|++||+|+|+|+++||||+++++||||||+||+||+++||||+|||||||++|+|||++++++|+||+++|
T Consensus 18 ~~~~gpp~~v~elG~f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~~gv~a~Sfk~gd 97 (114)
T 3u28_C 18 GSHMGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGD 97 (114)
T ss_dssp -----CCSCEEEEEEEEEEETTEEEEEECSSSEECTTCEEECTTCCEEEEEEEEESBTTSCEEEEEECTTCCGGGCCTTC
T ss_pred CCCCCCCHHHheeeeEEEEeCCeEEEEeCCCCCCCCCCEeEccCCccceeEeEEeCCCCccEEEEEecCCCcccccccCC
Confidence 56999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcCCccCC
Q 029223 121 KFYIDPSKLLPLARFLP 137 (197)
Q Consensus 121 klyIdp~klLPLdrflP 137 (197)
++||+++|||||+||||
T Consensus 98 k~YId~~kllPl~rFlp 114 (114)
T 3u28_C 98 KFYIAADKLLPIERFLP 114 (114)
T ss_dssp EEEEEGGGEECGGGGCC
T ss_pred EEEECccccCcHHhcCC
Confidence 99999999999999997
No 2
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.92 E-value=1.7e-25 Score=164.79 Aligned_cols=76 Identities=21% Similarity=0.450 Sum_probs=68.3
Q ss_pred CcceEEeeceeeec-cCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCcEEEEc
Q 029223 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125 (197)
Q Consensus 47 Ps~vl~lG~~sh~c-e~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~GdklyId 125 (197)
-+++++||+|+|.| +++|||+++ ++|+||++|||+|+++||||+|||||||++|++||+++ ..++++ ++|+|||+
T Consensus 5 ~~~mk~lG~~~h~~~~g~lV~k~~--~~P~~na~Vy~e~~~~IGkV~dIfGPv~~pY~sVk~~~-~~~~s~-~g~klYi~ 80 (82)
T 2ey4_C 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYVD 80 (82)
T ss_dssp ---CBCCCCEEEEETTTEEEEECS--SCCCTTCEEECTTCCCCEEEEEEEEESSSCEEEEEECS-SSCSTT-BTCCCEEC
T ss_pred cceeEEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEeCC-CChhhc-CCCeEEec
Confidence 46799999999999 889999984 79999999999999999999999999999999999997 567777 99999999
Q ss_pred C
Q 029223 126 P 126 (197)
Q Consensus 126 p 126 (197)
+
T Consensus 81 ~ 81 (82)
T 2ey4_C 81 E 81 (82)
T ss_dssp -
T ss_pred C
Confidence 7
No 3
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.91 E-value=2.5e-24 Score=164.89 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=66.8
Q ss_pred CcceEEeeceeeec-cCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCcEEEEc
Q 029223 47 PAEVVEVSSFLHAC-EGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125 (197)
Q Consensus 47 Ps~vl~lG~~sh~c-e~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~GdklyId 125 (197)
-+++++||+|+|.| +++|||+++ ++|+|||+|||+|+++||+|+|||||||++|++||+++ ..++++ ++|+|||+
T Consensus 5 ~~~mk~lG~~~H~~~~g~lVvk~~--~vP~~na~Vy~enk~~IGKV~DIfGPV~~pY~sVKp~~-~s~~~~-~G~klYI~ 80 (104)
T 2hvy_B 5 GEKMKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKV-SNPEIY-VGEVLYVD 80 (104)
T ss_dssp ---CEEEEEEEEEETTTEEEEECS--SCCCTTCEEECTTCCEEEEEEEEEEESSSCEEEEEECS-SCGGGG-TTCEEEEC
T ss_pred cceeeEeEEEEEEcCCCCEEEEeC--CCCCCCCEeEcCCCCEeEEEEEEECCCCCcEEEEEecC-CCcccc-CCCEEEEc
Confidence 46899999999999 889999984 79999999999999999999999999999999999987 333333 89999999
Q ss_pred CCC
Q 029223 126 PSK 128 (197)
Q Consensus 126 p~k 128 (197)
+.+
T Consensus 81 ~~~ 83 (104)
T 2hvy_B 81 ERK 83 (104)
T ss_dssp C--
T ss_pred Ccc
Confidence 766
No 4
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=149.14 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=73.6
Q ss_pred CCc-ceEEeeceeeeccCceEeccccc-ccCcccceEEccCCeeeeeeeEEecccCCceeEEeecC--CccccccccCcE
Q 029223 46 PPA-EVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME--GIVATSYSLGDK 121 (197)
Q Consensus 46 PPs-~vl~lG~~sh~ce~dlV~K~~~~-~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d--~v~a~s~~~Gdk 121 (197)
||+ ++++||+|+|.|++++||+++++ .+|++|++|++|++++||+|+||||||+++|++||+.+ .+++.+++++++
T Consensus 20 ~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~edk~~IGkV~EiFGpV~~PyysVk~~~~~~i~a~~~~~G~k 99 (103)
T 2eqn_A 20 PEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKET 99 (103)
T ss_dssp CTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECTTSBEEEEEEEEESCSSSCEEEECCSSHHHHHHHTCCTTCE
T ss_pred CCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEecCCcEEEEEEEEECCCCCCEEEEEeCcccccccccccCCCE
Confidence 455 88899999999999999999866 58999999999999999999999999999999999965 678889999999
Q ss_pred EEEc
Q 029223 122 FYID 125 (197)
Q Consensus 122 lyId 125 (197)
+||+
T Consensus 100 vY~~ 103 (103)
T 2eqn_A 100 MYFA 103 (103)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 5
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-20 Score=148.44 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCcceEEeeceeeeccCceEecccc---cccCcccceEEccCCeeeeeeeEEecccCCceeEEeecC----Ccccccccc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTN---EKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME----GIVATSYSL 118 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~---~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d----~v~a~s~~~ 118 (197)
|-+++++||+|+|.|++++||+++. .++|++|++|+++|+++||+|+||||||+++|++||+.+ .+++.++++
T Consensus 26 ~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~ledr~~IGkV~EiFGpV~~P~ysVk~~~~~~e~i~~~~~~~ 105 (131)
T 2v3m_A 26 EKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 105 (131)
T ss_dssp TTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEETTCCEEEECCEEESCSSSCEEEEECCGGGHHHHHHHHTTT
T ss_pred CCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEecCCcEEEEEEEEeCCCCCcEEEEEeCCcchhhhhhcccCC
Confidence 3468999999999999999999874 368999999999999999999999999999999999974 478889999
Q ss_pred CcEEEEcCCC
Q 029223 119 GDKFYIDPSK 128 (197)
Q Consensus 119 GdklyIdp~k 128 (197)
++++||+++.
T Consensus 106 G~kvY~~~~~ 115 (131)
T 2v3m_A 106 GEKAFIVTPD 115 (131)
T ss_dssp TSEEEEEC--
T ss_pred CCEEEECcCc
Confidence 9999999765
No 6
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=97.48 E-value=4.8e-05 Score=58.61 Aligned_cols=71 Identities=32% Similarity=0.531 Sum_probs=42.8
Q ss_pred EecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEeecC----Ccccccccc-C--cEEEEcCCCCCcCCccC
Q 029223 65 VTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKMME----GIVATSYSL-G--DKFYIDPSKLLPLARFL 136 (197)
Q Consensus 65 V~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~~d----~v~a~s~~~-G--dklyIdp~klLPLdrfl 136 (197)
|.++.++.| .|.+++.+.+ |++..++-.||.++..++... ..+...+.+ + ..+++.|+. |.+|..|
T Consensus 7 L~~~~gk~V-----~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~-l~~d~~l 80 (119)
T 1b34_A 7 LMKLSHETV-----TIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDS-LPLDTLL 80 (119)
T ss_dssp HHTCTTCEE-----EEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTT-CCHHHHT
T ss_pred HHHhCCCEE-----EEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccc-cccchhH
Confidence 334444556 7888888766 999999999999888886421 122223333 2 334445666 8888877
Q ss_pred ----CCCCC
Q 029223 137 ----PQPKG 141 (197)
Q Consensus 137 ----Pkpk~ 141 (197)
||+|.
T Consensus 81 ~~~~pK~k~ 89 (119)
T 1b34_A 81 VDVEPKVKS 89 (119)
T ss_dssp C--------
T ss_pred hhhcccccc
Confidence 55443
No 7
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.0017 Score=47.24 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=33.0
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc-cCCeeee
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL-QNKTQIG 89 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~-knkt~IG 89 (197)
..+..++.+|+|++|.+.|+++.|.++|+..-+. +..|.. ++....|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G 56 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTG 56 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEee
Confidence 4567788999999999999999888888764332 444443 3333344
No 8
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.23 E-value=0.00074 Score=51.96 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=30.4
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEccC
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn 84 (197)
..+++.+|+|++|.+.++++.|.++|+..-+..+..|..+.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 75 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 34678999999999999998888888765444444554443
No 9
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.18 E-value=0.0016 Score=59.34 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=29.9
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
..|..+|||+||.+.|+++.|.++|...-+...+.|+.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d 137 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS 137 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc
Confidence 456789999999999999999998876555455555544
No 10
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0021 Score=45.92 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCe--eeeeeeEEecccCCceeEEeecCCccccc-ccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKT--QIGKVDEIFGPINESYFSVKMMEGIVATS-YSL 118 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt--~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s-~~~ 118 (197)
....++..+|+|++|.+.++++.|.++|+..-+.....|..+..+ ..| |+ |+.++..+ .|.. ++.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g-----~a-----fV~f~~~~--~a~~a~~~ 77 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRG-----FG-----FVKFKDPN--CVGTVLAS 77 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEE-----EE-----EEEESSTT--HHHHHHHH
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcce-----EE-----EEEECCHH--HHHHHHHh
Confidence 345678899999999999999988888876544444455444322 223 33 55554333 2222 222
Q ss_pred CcEEEEcCCCCCcCCccCCCCCC
Q 029223 119 GDKFYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 119 GdklyIdp~klLPLdrflPkpk~ 141 (197)
+...|+..+ |-+++..|++..
T Consensus 78 -~~~~~~g~~-l~V~~a~~~~~~ 98 (105)
T 2dh8_A 78 -RPHTLDGRN-IDPKPCTPRGMQ 98 (105)
T ss_dssp -CSEEETTEE-EBCCCSCCSSCC
T ss_pred -CCCeECCEE-EEEEEccCCCCC
Confidence 556777666 888887666543
No 11
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.14 E-value=0.00088 Score=49.05 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=26.5
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
+..+|+.+|+|++|.+.++++.|.++|+...+
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 33 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGI 33 (116)
Confidence 34678999999999999999988888876443
No 12
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.03 E-value=0.0027 Score=46.01 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
...++.+|+|++|.+.|+++.|.++|.+.-+...+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~ 48 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY 48 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe
Confidence 34567899999999999998888887654433333333
No 13
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.0061 Score=44.35 Aligned_cols=40 Identities=8% Similarity=-0.064 Sum_probs=29.3
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
....++..+|+|++|.+.++++.|.++|+..-+.....|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 50 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI 50 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEES
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEE
Confidence 4566788999999999999998888887654333333333
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.0021 Score=45.79 Aligned_cols=88 Identities=8% Similarity=0.037 Sum_probs=49.5
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCcccccccc-C
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSL-G 119 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~-G 119 (197)
..+..++..+|+|++|.+.++++.|.++|+..-+.....|..+..+..+ |.-|..++...|..+.. -
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g------------~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG------------FGFVTFENSADADRAREKL 75 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCC------------EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcE------------EEEEEECCHHHHHHHHHHh
Confidence 3456678899999999999999888888876444334444443322112 33343333223322211 1
Q ss_pred cEEEEcCCCCCcCCccCCCCCC
Q 029223 120 DKFYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 120 dklyIdp~klLPLdrflPkpk~ 141 (197)
+...|+..+ |-+++..|++..
T Consensus 76 ~g~~~~g~~-l~v~~a~~~~~~ 96 (103)
T 2cq3_A 76 HGTVVEGRK-IEVNNATARVMT 96 (103)
T ss_dssp TTCEETTEE-CEEEECCSSCCC
T ss_pred CCCEECCEE-EEEEEcccCCCC
Confidence 223455555 777776666544
No 15
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.74 E-value=0.0011 Score=46.95 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=26.1
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
.+..+|+.+|+|++|.+.++++.|.++|++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 41 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRF 41 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3567889999999999999998888887653
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.0021 Score=44.93 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=28.3
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
++|+.+|+|++|.+.++++.|.++|++.-+.....|..
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 39 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK 39 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEee
Confidence 57889999999999999988888876544333334433
No 17
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.64 E-value=0.00088 Score=49.52 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=24.8
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
+..+++.+|+|++|.+.++++.|.++|+..
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 46 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEY 46 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 455677899999999999998888887653
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.63 E-value=0.0026 Score=47.70 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=46.5
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEccCCe--eeeeeeEEecccCCceeEEeecC-CccccccccCcE
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKT--QIGKVDEIFGPINESYFSVKMME-GIVATSYSLGDK 121 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt--~IGkV~EIFGpIn~~Y~sVK~~d-~v~a~s~~~Gdk 121 (197)
.++..+|+|++|.+.++++.|.++|++.-+.....|..+..+ ..| |+ |+.++..+ ...|-. .-+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g-----~a-----fV~f~~~~~a~~A~~--~l~g 106 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRG-----YG-----FVKFQSGSSAQQAIA--GLNG 106 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEE-----EE-----EEEESSHHHHHHHHH--HTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcce-----EE-----EEEECCHHHHHHHHH--HhCC
Confidence 345679999999999999888888766444344444443332 223 33 55553322 222211 1123
Q ss_pred EEEcCCCCCcCCccCCCCCC
Q 029223 122 FYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 122 lyIdp~klLPLdrflPkpk~ 141 (197)
..|...+ |-+++..++++.
T Consensus 107 ~~~~g~~-l~v~~a~~~~~~ 125 (139)
T 1u6f_A 107 FNILNKR-LKVALAASGHQR 125 (139)
T ss_dssp EECSSCE-EEEEESSCCCCC
T ss_pred CEECCeE-EEEEECCCCCCC
Confidence 4555554 777775555443
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.59 E-value=0.0075 Score=43.39 Aligned_cols=31 Identities=6% Similarity=-0.031 Sum_probs=25.6
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+++.+|+|++|.+.++++.|.++|++.-
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 47 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYG 47 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4456789999999999999988888886643
No 20
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.53 E-value=0.00084 Score=52.30 Aligned_cols=32 Identities=3% Similarity=0.019 Sum_probs=23.6
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.++..+..+|+|++|.+.|+++.|.++|++.-
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G 71 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN 71 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34556778999999999999999999887643
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.43 E-value=0.0076 Score=42.83 Aligned_cols=40 Identities=5% Similarity=-0.034 Sum_probs=30.0
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
...+++.+|+|++|.+.++++.|.++|++.-+..+..|..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~ 49 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK 49 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee
Confidence 4467889999999999999988888887654444444443
No 22
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.34 E-value=0.0033 Score=43.62 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=32.4
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeee
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIG 89 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IG 89 (197)
..+++.+|+|++|.+.++++.|.++|++.-+.....|..++....|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g 49 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKG 49 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcce
Confidence 4578899999999999999888888876544444455544333333
No 23
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.31 E-value=0.0068 Score=42.13 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc-CCeeeeeeeEEecccCCceeEEee-cCCccccccccCc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ-NKTQIGKVDEIFGPINESYFSVKM-MEGIVATSYSLGD 120 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k-nkt~IGkV~EIFGpIn~~Y~sVK~-~d~v~a~s~~~Gd 120 (197)
....+..+|+|++|.+.++++.|.++|... ......|..+ +....| |+ |+.++. ++...|-. -+
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g-----~a-----fV~f~~~~~a~~A~~---~~ 70 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTG-----YI-----FVDFSNEEEVKQALK---CN 70 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEE-----EE-----EEECSSHHHHHHHHH---SC
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCce-----EE-----EEEECCHHHHHHHHH---hC
Confidence 455677999999999999998888888765 5555555543 223334 33 444432 22222322 34
Q ss_pred EEEEcCCCCCcCCccCCCCC
Q 029223 121 KFYIDPSKLLPLARFLPQPK 140 (197)
Q Consensus 121 klyIdp~klLPLdrflPkpk 140 (197)
..+|...+ |.+++..++|+
T Consensus 71 g~~~~gr~-i~v~~a~~~~~ 89 (91)
T 2dgw_A 71 REYMGGRY-IEVFREKSGPS 89 (91)
T ss_dssp SEEETTEE-EEEEEESSCCC
T ss_pred CceeCCcE-EEEEECCcCCC
Confidence 45666555 67766666654
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.30 E-value=0.0036 Score=43.76 Aligned_cols=86 Identities=5% Similarity=-0.040 Sum_probs=48.9
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccc-eEEccCCeeeeeeeEEecccCCceeEEeecCCcccccccc-CcEE
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNA-PIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSL-GDKF 122 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na-~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~-Gdkl 122 (197)
++|+.+|+|++|.+.++++.|.++|+..-+.... .|..+..+.. ..-|.-|..++...|..+.. -+..
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~----------~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN----------SKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS----------CCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC----------cCeEEEEEECCHHHHHHHHHHcCCC
Confidence 5688999999999999999888888765554454 4444322211 11244444333333332221 1224
Q ss_pred EEcCCCCCcCCccCCCCCC
Q 029223 123 YIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 123 yIdp~klLPLdrflPkpk~ 141 (197)
.|...+ |-+++..|+++.
T Consensus 72 ~~~g~~-l~v~~a~~~~~~ 89 (96)
T 1x5t_A 72 YLCNRP-ITVSYAFKKDSK 89 (96)
T ss_dssp EETTEE-CEEEESCCCCCC
T ss_pred EECCEE-EEEEEecccCCC
Confidence 455555 777776655443
No 25
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.27 E-value=0.0036 Score=45.97 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
....+|+.+|+|+||.+.|+++.|.++|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~ 38 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLP 38 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTT
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 456789999999999999999888888764
No 26
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.27 E-value=0.0057 Score=42.35 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCcEEEE
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYI 124 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~GdklyI 124 (197)
+.++.+|+|++|.+.++++.|.++|.+.-+.....|..+ ..-|.-|..++...|+.+ .+..+.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------------~~g~afV~f~~~~~a~~~-~~~~~~~ 65 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---------------FRAFAFVTFADDQIAQSL-CGEDLII 65 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---------------CCSCCEEECSCHHHHHHT-TTCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---------------CCCEEEEEECCHHHHHHH-hcCCcee
Confidence 467899999999999999988888876443333333321 122334443343334333 3445666
Q ss_pred cCCCCCcCCccCCCCCC
Q 029223 125 DPSKLLPLARFLPQPKG 141 (197)
Q Consensus 125 dp~klLPLdrflPkpk~ 141 (197)
...+ |-+++..|++..
T Consensus 66 ~g~~-l~v~~a~~~~~~ 81 (88)
T 1wf0_A 66 KGIS-VHISNAEPKHNS 81 (88)
T ss_dssp TTEE-EEEECCCCCCCC
T ss_pred CCEE-EEEEecCCCCCC
Confidence 6555 667765555443
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.21 E-value=0.0031 Score=44.68 Aligned_cols=89 Identities=9% Similarity=-0.048 Sum_probs=49.0
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCcccccccc-Cc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSL-GD 120 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~-Gd 120 (197)
....+++.+|+|++|.+.++++.|.++|+..-+.....|..+..+.. ...|.-|..++...|..+.. -+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK----------HRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC----------CSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC----------cceEEEEEECCHHHHHHHHHHhC
Confidence 35567899999999999999988888887643333333333222210 11244454443333332221 12
Q ss_pred EEEEcCCCCCcCCccCCCCCC
Q 029223 121 KFYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 121 klyIdp~klLPLdrflPkpk~ 141 (197)
...|+..+ |-+++..|+++.
T Consensus 76 g~~~~g~~-l~V~~a~~~~~~ 95 (102)
T 2cqb_A 76 ESELFGRT-IRVNLAKPMRIK 95 (102)
T ss_dssp TEEETTEE-EEEEECCCCCCC
T ss_pred CCEECCcE-EEEEeCCCCCCC
Confidence 34555444 667665555443
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.17 E-value=0.0061 Score=44.85 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=25.5
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+|+++|+|++|.+.++++.|.++|+..
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~f 39 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKF 39 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 456899999999999999998888887653
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.98 E-value=0.0026 Score=44.77 Aligned_cols=38 Identities=3% Similarity=-0.039 Sum_probs=28.7
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
++|+.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 39 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK 39 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 57889999999999999988888876644433444443
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.95 E-value=0.0024 Score=47.87 Aligned_cols=83 Identities=8% Similarity=0.009 Sum_probs=46.8
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEee-cCCccccccccCcEE
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKM-MEGIVATSYSLGDKF 122 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~-~d~v~a~s~~~Gdkl 122 (197)
..+|+.+|+|+||++.++++.|.++|++.-+..+..|..+. | |+ |+.+.. +++..|-.....+..
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G-----fa-----FVeF~~~~~A~~Ai~~l~~~~~ 77 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----N-----QA-----FIEMNTEEAANTMVNYYTSVTP 77 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----T-----EE-----EEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----C-----EE-----EEEECCHHHHHHHHHHhccCCc
Confidence 46788999999999999998888887653333333443321 1 22 444432 222233221122334
Q ss_pred EEcCCCCCcCCccCCCCCC
Q 029223 123 YIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 123 yIdp~klLPLdrflPkpk~ 141 (197)
.|+..+ |.+++..+++..
T Consensus 78 ~l~Gr~-l~V~~A~~~~~~ 95 (105)
T 1sjq_A 78 VLRGQP-IYIQFSNHKELK 95 (105)
T ss_dssp EETTEE-CCBCCCSSSSCC
T ss_pred eECCEE-EEEEEcCCCCCC
Confidence 455555 777776655443
No 31
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.95 E-value=0.0015 Score=48.63 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...||++||+|+||.+.|+++.|.++|+..-
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG 46 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFG 46 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccC
Confidence 4568999999999999999988888876543
No 32
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.95 E-value=0.0059 Score=43.60 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCCcceEEeeceeeeccCceEeccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
...|+.+|+|++|.+.++++.|.++|+.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 34 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQ 34 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3467899999999999999888888754
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.95 E-value=0.0078 Score=42.75 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=30.6
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.....+..+|+|++|.+.++++.|.++|+..-+..+..|..+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 345568899999999999999888888876444444444443
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.91 E-value=0.0029 Score=44.90 Aligned_cols=40 Identities=3% Similarity=-0.058 Sum_probs=29.6
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
...+++.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~ 46 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK 46 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 5577889999999999999988888876543333334433
No 35
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.0045 Score=43.71 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=28.9
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
...+++.+|+|++|.+.++++.|.++|++.-+.....|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 43 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 43 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 446788999999999999998888888764333333343
No 36
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.88 E-value=0.0059 Score=44.37 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn 84 (197)
...|+..+|+|++|.+.++++.|.++|++.-+.....|..+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 61 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 344677999999999999999888888765444455555443
No 37
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=94.73 E-value=0.0087 Score=46.59 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred ceEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEeec--CC--ccccccccC---cEEEEcCCCCCcCCc
Q 029223 63 DAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKMM--EG--IVATSYSLG---DKFYIDPSKLLPLAR 134 (197)
Q Consensus 63 dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~~--d~--v~a~s~~~G---dklyIdp~klLPLdr 134 (197)
++|.++..+.| .|.+++.+.+ |++.+++..||..+..++.. +. .+...+.+. .++++.|+. |.++.
T Consensus 8 ~~L~~~~gk~V-----~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~-l~~~~ 81 (126)
T 2y9a_D 8 KVLHEAEGHIV-----TCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDM-LKNAP 81 (126)
T ss_dssp HHHHSCSSCEE-----EEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSS-CSSSS
T ss_pred HHHHHhCCCEE-----EEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEcccc-ccchH
Confidence 34555666667 8899998877 99999999999998888642 22 223333332 344555666 77777
Q ss_pred cC
Q 029223 135 FL 136 (197)
Q Consensus 135 fl 136 (197)
+|
T Consensus 82 ~l 83 (126)
T 2y9a_D 82 ML 83 (126)
T ss_dssp HH
T ss_pred Hh
Confidence 77
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=94.72 E-value=0.0018 Score=45.91 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=49.1
Q ss_pred cceEEeeceeeeccCceEeccccccc-CcccceEEccCCe--eeeeeeEEecccCCceeEEee-cCCccccccccCcEEE
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKI-PYFNAPIYLQNKT--QIGKVDEIFGPINESYFSVKM-MEGIVATSYSLGDKFY 123 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~V-P~~na~V~~knkt--~IGkV~EIFGpIn~~Y~sVK~-~d~v~a~s~~~Gdkly 123 (197)
|++|+|.+|.+.++++-|.++|++.- +.....|..+..+ ..| |+ |+.++. +++..|-.. ....+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg-----~a-----FV~F~~~~~A~~Ai~~-~~~~~~ 69 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRG-----FA-----FVEFSHLQDATRWMEA-NQHSLN 69 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSS-----EE-----EEECSSHHHHHHHHHT-TTTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCc-----eE-----EEEecCHHHHHHHHHh-cCCCeE
Confidence 68999999999999998888876543 3334444433322 223 33 455532 222222111 123566
Q ss_pred EcCCCCCcCCccCCCCCC
Q 029223 124 IDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 124 Idp~klLPLdrflPkpk~ 141 (197)
|+..+ |.+++..|+|+.
T Consensus 70 ~~gr~-i~V~~a~~~~~~ 86 (91)
T 2lxi_A 70 ILGQK-VSMHYSDPKPKI 86 (91)
T ss_dssp ETTEE-EEEECCCSCCCC
T ss_pred ECCEE-EEEEEcCCCCCC
Confidence 77666 888888787764
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.67 E-value=0.016 Score=41.09 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=25.4
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...++..+|+|++|.+.++++.|.++|++.-
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G 38 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYG 38 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4556789999999999999988888876543
No 40
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.66 E-value=0.012 Score=41.88 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCe--eeeeeeEEecccCCceeEEeec-CCcccccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKT--QIGKVDEIFGPINESYFSVKMM-EGIVATSYSL 118 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt--~IGkV~EIFGpIn~~Y~sVK~~-d~v~a~s~~~ 118 (197)
....+|..+|+|++|.+.++++.|.++|+.. ...+..|..+..+ ..| |+ |+.++.. +...|- .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g-----~a-----fV~f~~~~~a~~A~---~ 74 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKG-----FC-----YVEFDEVDSLKEAL---T 74 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEE-----EE-----EEEESSHHHHHHHG---G
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccce-----EE-----EEEECCHHHHHHHH---h
Confidence 3456788999999999999998888887654 3344445444332 223 33 5555332 222222 1
Q ss_pred CcEEEEcCCCCCcCCccCCCCC
Q 029223 119 GDKFYIDPSKLLPLARFLPQPK 140 (197)
Q Consensus 119 GdklyIdp~klLPLdrflPkpk 140 (197)
-+...|...+ |-+++..|++.
T Consensus 75 l~g~~~~g~~-l~V~~a~~~~~ 95 (103)
T 2dng_A 75 YDGALLGDRS-LRVDIAEGRKQ 95 (103)
T ss_dssp GTTCEETTEE-CEEEECCCCCC
T ss_pred hCCCeECCeE-EEEEEecCCCC
Confidence 1234555554 67776555544
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.62 E-value=0.0032 Score=46.29 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=32.7
Q ss_pred cceEEeeceeeeccCceEecccccccCcccceEEccCCeeee
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIG 89 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IG 89 (197)
+.+|||++|.+.++++.|.++|.+.-+.....|+.+..+..|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg 46 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 46 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCc
Confidence 468999999999999999999887655566677766655444
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.61 E-value=0.011 Score=41.58 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=24.5
Q ss_pred CCCCcceEEeeceeeeccCceEecccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...++.+|+|++|.+.++++.|.++|+..
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 32 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY 32 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 35788999999999999998888887653
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.55 E-value=0.0092 Score=42.34 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=49.3
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccc-ccCcccceEEccC-CeeeeeeeEEecccCCceeEEee-cCCccccccccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNE-KIPYFNAPIYLQN-KTQIGKVDEIFGPINESYFSVKM-MEGIVATSYSLG 119 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~-~VP~~na~V~~kn-kt~IGkV~EIFGpIn~~Y~sVK~-~d~v~a~s~~~G 119 (197)
...+|+.+|+|++|.+.++++.|.++|+. .-+.....|..+. ....| |+ |+.++. ++...|... -
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g-----~a-----fV~f~~~~~a~~A~~~--l 71 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKG-----YG-----FVKFTDELEQKRALTE--C 71 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEE-----EE-----EEEESCHHHHHHHHHH--T
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccc-----eE-----EEEECCHHHHHHHHHH--c
Confidence 45678899999999999999888888776 4444444444432 11223 33 445432 222222211 1
Q ss_pred cEEE-EcCCCCCcCCccCCCCCC
Q 029223 120 DKFY-IDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 120 dkly-Idp~klLPLdrflPkpk~ 141 (197)
+... |+..+ |.+++..|++..
T Consensus 72 ~g~~~~~g~~-l~v~~a~~~~~~ 93 (104)
T 2dhg_A 72 QGAVGLGSKP-VRLSVAIPKASR 93 (104)
T ss_dssp TTCCSSSSSC-CCCCBCCCCCSC
T ss_pred cCCcccCCEe-EEEEEccCCCcC
Confidence 2233 55555 788887655443
No 44
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.47 E-value=0.007 Score=42.83 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
....+++.+|+|++|.+.++++.|.++|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDG 38 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTT
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcC
Confidence 355688899999999999999888888874
No 45
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.45 E-value=0.0068 Score=44.09 Aligned_cols=85 Identities=5% Similarity=-0.016 Sum_probs=49.4
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCcEEEEc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYID 125 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~GdklyId 125 (197)
++..+|+|++|.+.++++.|.++|...-+..+..|..+..+.. ..-|.-|...+...|..+..-+...|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----------~~g~afV~f~~~~~a~~Ai~~~~~~~~ 94 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR----------SRGFGFVTFSSMAEVDAAMAARPHSID 94 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS----------CCSEEEEECSSHHHHHHHHTSCSEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC----------cCceEEEEeCCHHHHHHHHHhCCcEEC
Confidence 3457999999999999988888887654444555554433211 011334433333233322222456666
Q ss_pred CCCCCcCCccCCCCCC
Q 029223 126 PSKLLPLARFLPQPKG 141 (197)
Q Consensus 126 p~klLPLdrflPkpk~ 141 (197)
..+ |.+++..|+++.
T Consensus 95 g~~-l~V~~a~~~~~~ 109 (116)
T 1x4b_A 95 GRV-VEPKRAVAREES 109 (116)
T ss_dssp TEE-EEEECCSSCCCC
T ss_pred CEE-EEEEECCCCccC
Confidence 655 778886666554
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.41 E-value=0.011 Score=42.70 Aligned_cols=42 Identities=12% Similarity=-0.051 Sum_probs=31.5
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..+..+|+.+|+|++|.+.++++.|.++|.+.-+..+..|..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 49 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE 49 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 446778899999999999999988888887644434444443
No 47
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.41 E-value=0.012 Score=45.54 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccC---cccceEEc-cCCeeee
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIP---YFNAPIYL-QNKTQIG 89 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP---~~na~V~~-knkt~IG 89 (197)
+...++.+|+|++|.+.|+++.|.++|+..-+ .....|.. ++....|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG 89 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSG 89 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCe
Confidence 44456789999999999999988888876433 33444443 3334445
No 48
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.40 E-value=0.0057 Score=44.78 Aligned_cols=84 Identities=7% Similarity=-0.008 Sum_probs=48.2
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCc-ccceEEccC-CeeeeeeeEEecccCCceeEEeecC-Cccccccc
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPY-FNAPIYLQN-KTQIGKVDEIFGPINESYFSVKMME-GIVATSYS 117 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~-~na~V~~kn-kt~IGkV~EIFGpIn~~Y~sVK~~d-~v~a~s~~ 117 (197)
..+...++.+|+|++|.+.|+++.|.++|+..-+. .+..|+.+. ....| |+ |+.++..+ ...| ++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G-----~a-----fV~F~~~~~a~~A--l~ 75 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG-----QA-----LVQFKNEDDARKS--ER 75 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSS-----CE-----EEECSSHHHHHHH--GG
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcce-----EE-----EEEECCHHHHHHH--HH
Confidence 34566788999999999999999888888764333 334443322 22223 33 45553322 2222 22
Q ss_pred cCcEEEEcCCCCCcCCccCCC
Q 029223 118 LGDKFYIDPSKLLPLARFLPQ 138 (197)
Q Consensus 118 ~GdklyIdp~klLPLdrflPk 138 (197)
. +..+|+..+ |-+++..++
T Consensus 76 ~-~~~~~~gr~-i~v~~a~~~ 94 (114)
T 2cpy_A 76 L-HRKKLNGRE-AFVHVVTLE 94 (114)
T ss_dssp G-CSEEETTEE-EEEEEECHH
T ss_pred h-CCCccCCeE-EEEEECCHH
Confidence 2 556666555 666665533
No 49
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.37 E-value=0.0026 Score=48.62 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.2
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
....+|+.+|+|++|.+.|+++.|.++|+..-...+..|.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~ 64 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML 64 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe
Confidence 4567899999999999999998888888754433344444
No 50
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.37 E-value=0.0095 Score=41.54 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=26.1
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
....+++.+|+|++|.+.++++.|.++|+..
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 34 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEY 34 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3567888999999999999998888887653
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.32 E-value=0.013 Score=41.21 Aligned_cols=42 Identities=5% Similarity=-0.055 Sum_probs=31.7
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcc-cceEEccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYF-NAPIYLQN 84 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~-na~V~~kn 84 (197)
...+++.+|+|++|.+.++++.|.++|++.-+.. +..|..+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR 46 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence 4567889999999999999998888887655444 55555443
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.31 E-value=0.0073 Score=43.28 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=28.3
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
...+|+.+|+|++|.+.++++.|.++|...-+..+..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVV 48 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 445678999999999999998888887654333333333
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.22 E-value=0.0033 Score=43.09 Aligned_cols=38 Identities=11% Similarity=-0.167 Sum_probs=26.4
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+++.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK 40 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe
Confidence 46788999999999999988888877544434444443
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.22 E-value=0.0079 Score=44.42 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=25.5
Q ss_pred CCCCCCcceEEeeceee-eccCceEecccccc
Q 029223 42 RDEGPPAEVVEVSSFLH-ACEGDAVTKLTNEK 72 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh-~ce~dlV~K~~~~~ 72 (197)
....+|+.+|+|+||.+ .|+++.|.++|++.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~f 40 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPF 40 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGG
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhc
Confidence 34567999999999999 99888888887643
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.14 E-value=0.0074 Score=42.88 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=30.8
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
....+++.+|+|++|.+.++++.|.++|+..-+.....|..+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 50 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec
Confidence 345678899999999999999888888765444444444444
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.10 E-value=0.019 Score=40.69 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=49.5
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCC--eeeeeeeEEecccCCceeEEeecCCccccccccC
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNK--TQIGKVDEIFGPINESYFSVKMMEGIVATSYSLG 119 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knk--t~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~G 119 (197)
....++..+|+|++|.+.++++.|.++|...-+.....|..+.. ...| |+ |+.+ ++...|..+..
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g-----~a-----fV~f--~~~~~a~~A~~- 75 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKG-----FG-----FVRF--TEYETQVKVMS- 75 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEE-----EE-----EEEE--SSHHHHHHHHH-
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccc-----eE-----EEEE--CCHHHHHHHHH-
Confidence 34557788999999999999988888887654444444444332 2223 33 4444 33223332222
Q ss_pred cEEEEcCCCCCcCCccCCCCCC
Q 029223 120 DKFYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 120 dklyIdp~klLPLdrflPkpk~ 141 (197)
+...|+..+ |-+++..+++..
T Consensus 76 ~~~~~~g~~-l~v~~a~~~~~~ 96 (103)
T 2cqg_A 76 QRHMIDGRW-CDCKLPNSKQSQ 96 (103)
T ss_dssp SCEEETTEE-EEEECCCTTCCC
T ss_pred cCCeeCCeE-EEEEecCCCCcC
Confidence 224555554 777776665544
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.10 E-value=0.01 Score=41.18 Aligned_cols=30 Identities=3% Similarity=0.036 Sum_probs=25.0
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+++.+|+|++|.+.++++.|.++|+..
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 32 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQY 32 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhC
Confidence 346788999999999999998888887653
No 58
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.98 E-value=0.0087 Score=42.31 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=26.0
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
....+|+.+|+|++|.+.++++.|.++|++.-
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYG 40 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcC
Confidence 34557889999999999999988888876543
No 59
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.97 E-value=0.012 Score=41.69 Aligned_cols=30 Identities=3% Similarity=0.083 Sum_probs=25.8
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
....+++.+|+|++|.+.++++.|.++|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 38 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEK 38 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 356678999999999999999888888775
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.91 E-value=0.01 Score=41.90 Aligned_cols=41 Identities=5% Similarity=0.084 Sum_probs=30.1
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
....+++.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 51 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT 51 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 34567889999999999999988888887644433444443
No 61
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.90 E-value=0.009 Score=43.15 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
...+|+.+|+|++|.+.++++.|.++|..
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~ 48 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFAR 48 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 44578899999999999999888888765
No 62
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.88 E-value=0.0066 Score=45.84 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCCCcceEEeeceeee-ccCceEecccccccCcccceE
Q 029223 43 DEGPPAEVVEVSSFLHA-CEGDAVTKLTNEKIPYFNAPI 80 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~-ce~dlV~K~~~~~VP~~na~V 80 (197)
...+|+.+|+|+||.+. ++++.|.++|+..-+..+..|
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i 58 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL 58 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE
Confidence 34689999999999998 888888888765443334444
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.83 E-value=0.014 Score=41.49 Aligned_cols=30 Identities=3% Similarity=0.014 Sum_probs=24.9
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+|+.+|+|++|.+.++++.|.++|++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGL 39 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTS
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHC
Confidence 445688999999999999998888887643
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.80 E-value=0.025 Score=39.57 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=28.7
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..++..+|+|++|.+.++++.|.++|...-+.....++.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~ 49 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE
Confidence 446678999999999999988888887644443444443
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=93.78 E-value=0.017 Score=41.00 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=30.1
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
+..+++.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR 49 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 4567899999999999999988888887654444444443
No 66
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.74 E-value=0.013 Score=43.26 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=29.2
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
....+..+|||++|.+.++++.|.++|...-+...+.++.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~ 59 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA 59 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 3345668999999999999998998887654444434443
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.67 E-value=0.014 Score=42.13 Aligned_cols=42 Identities=7% Similarity=-0.095 Sum_probs=30.4
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.....+++.+|+|++|.+.++++.|.++|...-+.....|..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 49 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 345567889999999999999988888877544433444443
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.53 E-value=0.0056 Score=43.62 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=25.8
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
.+..+++.+|+|++|.+.++++.|.++|+..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 39 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTF 39 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTT
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHcc
Confidence 3556788999999999999998888887654
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=93.33 E-value=0.0095 Score=45.03 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
....+|+.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 80 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 80 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 45567889999999999999988888887654444444443
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.28 E-value=0.014 Score=42.44 Aligned_cols=86 Identities=9% Similarity=-0.072 Sum_probs=48.9
Q ss_pred CCCCCcceEEeeceeeeccCceEe---cccccccCcccceEEccCCe-----eeeeeeEEecccCCceeEEeecCCcccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVT---KLTNEKIPYFNAPIYLQNKT-----QIGKVDEIFGPINESYFSVKMMEGIVAT 114 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~---K~~~~~VP~~na~V~~knkt-----~IGkV~EIFGpIn~~Y~sVK~~d~v~a~ 114 (197)
..-.++++|+|++|.+.++++.|. ++|...-+.....|..+..+ ..| |+ |+++ ++...|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G-----~a-----fV~f--~~~~~A~ 77 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSA-----SA-----YVTY--IRSEDAL 77 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCE-----EE-----EEEE--SSHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCe-----EE-----EEEE--CcHHHHH
Confidence 345678999999999999998777 77765444444444433321 112 22 4444 3322222
Q ss_pred ccccC-cEEEEcCCCCCcCCccCCCCCC
Q 029223 115 SYSLG-DKFYIDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 115 s~~~G-dklyIdp~klLPLdrflPkpk~ 141 (197)
..... +...|+..+ |-+++..|++..
T Consensus 78 ~Ai~~lng~~~~gr~-l~V~~a~~k~~~ 104 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRT-LKASLGTTKYCS 104 (111)
T ss_dssp HHHHHHTTEEETTEE-EEEESCCCCSCS
T ss_pred HHHHHhCCCEECCEE-EEEEeccccccc
Confidence 22111 334566555 778877777643
No 71
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.26 E-value=0.01 Score=41.85 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccCcEE
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKF 122 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~Gdkl 122 (197)
...+|..+|+|++|++.++++.|.++|+..-+.....|..+ ..| |+ |+++ ++...|+.+ .+..+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srG-----fa-----FV~F--~~~~~A~~~-~~~~~ 69 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRA-----FA-----FVTF--ADDKVAQSL-CGEDL 69 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCS-----EE-----EEEE--SCHHHHHHH-TTCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCC-----EE-----EEEE--CCHHHHHHH-cCCCc
Confidence 45678899999999999999999888865332222222221 112 33 4444 333334332 34556
Q ss_pred EEcCCCCCcCCccCCCC
Q 029223 123 YIDPSKLLPLARFLPQP 139 (197)
Q Consensus 123 yIdp~klLPLdrflPkp 139 (197)
.+...+ |-+++..|++
T Consensus 70 ~~~g~~-v~v~~a~~k~ 85 (89)
T 3d2w_A 70 IIKGIS-VHISNAEPKH 85 (89)
T ss_dssp EETTEE-EEEEECC---
T ss_pred ccCCEE-EEEEEcCCCC
Confidence 666555 5566655543
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.22 E-value=0.0098 Score=42.28 Aligned_cols=32 Identities=13% Similarity=-0.051 Sum_probs=26.3
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
....+++.+|+|++|.+.++++.|.++|+..-
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 40 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAG 40 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 35567889999999999999988888876543
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.19 E-value=0.012 Score=42.72 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
...+++.+|+|++|.+.++++.|.++|+..-+..+..|..+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 64 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 64 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCB
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 45577899999999999999988888876544445555444
No 74
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.19 E-value=0.0079 Score=41.80 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=25.4
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
.+..+++.+|+|++|.+.++++.|.++|+.
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 32 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFER 32 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 356788999999999999999888887754
No 75
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.06 E-value=0.011 Score=43.50 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=32.0
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEccCC
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNK 85 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knk 85 (197)
.||..+|+|++|.+.++++.|.++|++.-+.....|+.+..
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~ 43 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR 43 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC
Confidence 47889999999999999999999887655555556655444
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=93.03 E-value=0.011 Score=43.15 Aligned_cols=40 Identities=3% Similarity=-0.051 Sum_probs=25.6
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
+..+++.+|||++|.+.++++.|.++|+..-+..+..|..
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 59 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR 59 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEE
Confidence 4456789999999999999988888887644433444443
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.97 E-value=0.022 Score=41.04 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
+..+++.+|+|++|.+.++++.|.++|+..-+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 41 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGV 41 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Confidence 45678899999999999999888888876443
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.94 E-value=0.014 Score=40.53 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.1
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..|++.+|+|++|.+.++++.|.++|++.-+..+..++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~ 49 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 356779999999999999988888887643333333433
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.89 E-value=0.011 Score=42.57 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=23.4
Q ss_pred CCCCcceEEeeceeeeccCceEeccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
..++..+|+|++|.+.++++.|.++|..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 48 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSP 48 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 3467889999999999999888887754
No 80
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=92.84 E-value=0.0068 Score=43.18 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=28.9
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
..+++.+|+|++|.+.++++.|.++|+..-+..+..|..+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~ 58 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD 58 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec
Confidence 3466788999999999999888888766444444444443
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.79 E-value=0.0089 Score=42.29 Aligned_cols=41 Identities=7% Similarity=-0.068 Sum_probs=27.4
Q ss_pred CCCCcceEEeeceeeeccCceEe----cccccccCcccceEEccC
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVT----KLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~----K~~~~~VP~~na~V~~kn 84 (197)
.-++..+|+|++|.+.++++.|. ++|++.-+.....|..+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~ 49 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT 49 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC
Confidence 34567899999999999988776 776643333333444333
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.59 E-value=0.031 Score=41.29 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
+...+..+|+|++|.+.|+++.|.++|+..
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~ 41 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDC 41 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHc
Confidence 334566889999999999999898888764
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.17 E-value=0.023 Score=40.82 Aligned_cols=31 Identities=6% Similarity=0.198 Sum_probs=25.4
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
+..+++.+|+|++|.+.|+++.|.++|...-
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 40 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLE 40 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4456779999999999999998888887543
No 84
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.16 E-value=0.01 Score=42.40 Aligned_cols=30 Identities=0% Similarity=-0.088 Sum_probs=25.1
Q ss_pred CCCCcceEEeeceeeeccCceEeccccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.++++.+|||++|.+.++++.|.++|.+..
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G 33 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVT 33 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHS
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhc
Confidence 467889999999999999988888876543
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=92.14 E-value=0.04 Score=39.14 Aligned_cols=29 Identities=3% Similarity=0.060 Sum_probs=21.1
Q ss_pred CCCCcceEEeeceeeeccCceEecccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
..++..+|+|++|.+.++++.|.++|+..
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 43 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGL 43 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34677999999999999999888887653
No 86
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=92.10 E-value=0.013 Score=41.76 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=26.2
Q ss_pred CCCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
....+++.+|+|++|.+.++++.|.++|+..-
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 38 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG 38 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 35567889999999999999988888876543
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=92.06 E-value=0.013 Score=43.84 Aligned_cols=42 Identities=5% Similarity=-0.006 Sum_probs=30.4
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCc--ccceEEccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPY--FNAPIYLQN 84 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~--~na~V~~kn 84 (197)
....+.++|||++|.+.++++.|.++|++.-+. .+..|+.+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK 61 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence 345778999999999999999888888764333 334555444
No 88
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.013 Score=41.42 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=23.2
Q ss_pred CCCCCcceEEeeceee-eccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLH-ACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh-~ce~dlV~K~~~~~V 73 (197)
+..+|+.+|+|++|.+ .++++.|.++|+..-
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G 36 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYG 36 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcC
Confidence 4568999999999999 998888888876543
No 89
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.97 E-value=0.015 Score=44.56 Aligned_cols=30 Identities=7% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+++.+|||++|++.|+++.|.++|+..
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~ 66 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL 66 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC
Confidence 344567899999999999999888888654
No 90
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=91.94 E-value=0.038 Score=38.51 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
...+++.+|+|++|.+.++++.|.++|+.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~ 39 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFED 39 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhh
Confidence 44577899999999999999888888765
No 91
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=91.85 E-value=0.017 Score=40.85 Aligned_cols=39 Identities=8% Similarity=-0.084 Sum_probs=28.4
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.+++.+|+|++|.+.++++.|.++|...-+.....|..+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 456789999999999999888888766444444444443
No 92
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=91.82 E-value=0.017 Score=40.56 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.0
Q ss_pred CcceEEeeceeeeccCceEeccccccc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
|+.+|+|++|.+.++++.|.++|+..-
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G 27 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVG 27 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC
Confidence 789999999999999988888876543
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.76 E-value=0.035 Score=40.70 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=21.6
Q ss_pred CcceEEeeceeeeccCceEeccccccc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.+.+|+|+||.+.|+++.|.++|++.-
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 41 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG 41 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 458999999999999998888876543
No 94
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=91.71 E-value=0.034 Score=39.96 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=24.3
Q ss_pred CCCCCcceEEeeceeee-ccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHA-CEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~-ce~dlV~K~~~~~V 73 (197)
+..+++.+|+|++|.+. ++++.|.++|+..-
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G 53 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYG 53 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGS
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCC
Confidence 34456689999999999 88888888876543
No 95
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.69 E-value=0.032 Score=39.30 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
+..+++.+|+|++|.+.++++.|.++|+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNI 39 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTT
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 445788999999999999998888887655
No 96
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=91.68 E-value=0.0062 Score=44.11 Aligned_cols=38 Identities=5% Similarity=0.011 Sum_probs=28.1
Q ss_pred CCcceEEeeceeeeccCceEecccccc--cCcccceEEcc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEK--IPYFNAPIYLQ 83 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~--VP~~na~V~~k 83 (197)
..=+||||+||++.++++.|.++|++. +...+..|..+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d 46 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD 46 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec
Confidence 445899999999999999999998763 33444444443
No 97
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.63 E-value=0.013 Score=44.81 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCCCCcceEE--eeceeeeccCceEecccccccCcccceEEc
Q 029223 42 RDEGPPAEVVE--VSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 42 ~~~gPPs~vl~--lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+..||++|+. |+||+|.++++.|.++|++.-....+.|+.
T Consensus 17 ~~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 17 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CCCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 36778999975 799999999999999988755444555554
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=91.41 E-value=0.019 Score=44.55 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=29.3
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
..+++.+|||++|.+.|+++.|.++|...-+..+..|..+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~ 107 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD 107 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec
Confidence 3456678999999999999888888876555555555544
No 99
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.22 E-value=0.022 Score=39.61 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCCcceEEeeceeeeccCceEeccccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.+++..+|+|++|.+.++++.|.++|++.-
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 33 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRK 33 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 357889999999999999988888876543
No 100
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=91.20 E-value=0.06 Score=42.80 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=27.4
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
+++.+|+|++|.+.++++.|.++|++.-+.....|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 122 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 122 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 4568999999999999988888887644444444443
No 101
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.15 E-value=0.13 Score=35.72 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=23.9
Q ss_pred CCCcceEEeeceeeeccCceEeccccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+.+|+|++|.+.++++.|.++|...-
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 33 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFG 33 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 44667999999999999998888887543
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=90.91 E-value=0.04 Score=40.04 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=29.3
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
...+++.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 60 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 60 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3457789999999999999988888887644443444443
No 103
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.88 E-value=0.079 Score=36.58 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=26.5
Q ss_pred CCCCCCcceEEeeceeeeccCceEecccccccC
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
....|++.+|+|++|.+.++++.|.++|+..-+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 42 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGK 42 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC
Confidence 355678899999999999999888888765433
No 104
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.85 E-value=0.04 Score=38.81 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=23.6
Q ss_pred CCCcceEEeeceeeeccCceEeccccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.+++.+|+|++|.+.++++.|.++|++.-
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G 52 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFG 52 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCC
Confidence 34568999999999999988888876543
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=90.77 E-value=0.011 Score=42.55 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=25.1
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+++.+|+|++|.+.++++.|.++|+..-
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 51 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG 51 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4457788999999999999988888876543
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.69 E-value=0.043 Score=37.52 Aligned_cols=41 Identities=7% Similarity=0.001 Sum_probs=29.8
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
+..+++.+|+|++|.+.++++.|.++|+..-+..+..|..+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 46 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 46 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec
Confidence 44578899999999999999888888865444444445443
No 107
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.43 E-value=0.036 Score=41.98 Aligned_cols=28 Identities=7% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCcceEEeeceeeeccCceEecccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
.++..+|+|++|.|.|+++.|.++|+..
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~ 47 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQH 47 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 3567899999999999999999988764
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.32 E-value=0.039 Score=42.47 Aligned_cols=83 Identities=7% Similarity=0.030 Sum_probs=45.5
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEccC--CeeeeeeeEEecccCCceeEEeecCCccccccccCcEEE
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN--KTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFY 123 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn--kt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~Gdkly 123 (197)
++..+|+|++|.+.++++.|.++|+..-+.....|..+. ....| |+ |+.++. ...|..+..-...+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g-----~a-----fV~F~~--~~~A~~A~~~~~~~ 169 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG-----FA-----FVTFDD--HDSVDKIVIQKYHT 169 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEE-----EE-----EEEESS--HHHHHHHHHCSCCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccc-----eE-----EEEECC--HHHHHHHHHhCCcE
Confidence 566899999999999999888888764444444454432 22333 33 455533 22222221112356
Q ss_pred EcCCCCCcCCccCCCCCC
Q 029223 124 IDPSKLLPLARFLPQPKG 141 (197)
Q Consensus 124 Idp~klLPLdrflPkpk~ 141 (197)
|+..+ |-+++..|+...
T Consensus 170 ~~G~~-i~v~~a~~k~~~ 186 (196)
T 1l3k_A 170 VNGHN-CEVRKALSKQEM 186 (196)
T ss_dssp ETTEE-CEEEECC-----
T ss_pred ECCEE-EEEEecCChhHh
Confidence 66655 788887766554
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=90.08 E-value=0.031 Score=42.39 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=25.3
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceE
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPI 80 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V 80 (197)
++..+|+|++|.+.++++.|.++|+..-+..+..|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 44568999999999999888888765433333333
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=89.93 E-value=0.036 Score=40.34 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=25.1
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccC
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
+..+++.+|+|++|.+.++++.|.++|+..-+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 57 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGP 57 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC
Confidence 44578899999999999999888888765433
No 111
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.92 E-value=0.026 Score=39.32 Aligned_cols=36 Identities=3% Similarity=-0.076 Sum_probs=26.4
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNA 78 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na 78 (197)
+..+++.+|+|++|.+.++++.|.++|...-+....
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~ 45 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC 45 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEE
Confidence 334557899999999999998888887654333333
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=89.87 E-value=0.066 Score=39.32 Aligned_cols=38 Identities=3% Similarity=-0.007 Sum_probs=28.3
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..++.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 41 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK 41 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 45678999999999999988888877654444444444
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.83 E-value=0.029 Score=38.10 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=24.7
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...++..+|+|++|.+.++++.|.++++..
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTT
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhC
Confidence 455778999999999999998888877643
No 114
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=89.63 E-value=0.0098 Score=42.09 Aligned_cols=27 Identities=4% Similarity=-0.134 Sum_probs=22.8
Q ss_pred CCcceEEeeceeeeccCceEecccccc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
.++.+|+|++|.+.++++.|.++|++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~ 41 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL 41 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 467899999999999998888887653
No 115
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=89.61 E-value=0.031 Score=43.35 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=29.2
Q ss_pred CCCCCcceEE--eeceeeeccCceEecccccccCcccceEEccC
Q 029223 43 DEGPPAEVVE--VSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 43 ~~gPPs~vl~--lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn 84 (197)
-..+|++|+. |+||++.++++.|.++|++.-+.....|+.++
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~ 64 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 64 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC
Confidence 3457888888 99999999999999998875544444555443
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.48 E-value=0.047 Score=38.35 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=25.0
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+.+.+|+|++|.+.++++.|.++|.+.-
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G 44 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELG 44 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcC
Confidence 3445689999999999999988888876543
No 117
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.075 Score=37.26 Aligned_cols=28 Identities=4% Similarity=-0.173 Sum_probs=20.0
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+++.+|+|+++ .++++.|.++|++.
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~ 37 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPF 37 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTT
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhC
Confidence 44567889999995 66666677776543
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.05 E-value=0.12 Score=37.99 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=25.3
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...++..+|+|++|.+.++++.|.++|+..
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 87 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPF 87 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhc
Confidence 556788999999999999998888887653
No 119
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.01 E-value=0.025 Score=38.55 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=23.3
Q ss_pred CCCcceEEeeceeeeccCceEecccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
++.+.+|+|++|.+.++++.|.++|+..
T Consensus 1 s~~~~~l~V~nlp~~~t~~~l~~~F~~~ 28 (88)
T 4a8x_A 1 SMKPTKVHIGRLTRNVTKDHIMEIFSTY 28 (88)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3567899999999999998888887653
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=88.87 E-value=0.035 Score=40.21 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=25.2
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...+++.+|+|++|.+.++++.|.++|++.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 64 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPF 64 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 456778999999999999998888887654
No 121
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=88.85 E-value=0.047 Score=36.78 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=26.1
Q ss_pred cceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
+.+|+|++|.+.++++.|.++++..-+.....|..+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 36 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 36 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence 358999999999999888888766444444445443
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.85 E-value=0.047 Score=41.36 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=25.1
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...++..+|+|++|.+.++++.|.++|+..
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 97 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYY 97 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 455788999999999999998888887643
No 123
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=88.54 E-value=0.048 Score=41.93 Aligned_cols=40 Identities=3% Similarity=-0.028 Sum_probs=29.7
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
..+++.+|+|++|.+.++++.|.++|+..-+.....|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 48 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD 48 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc
Confidence 4456789999999999999988888876544444455443
No 124
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=88.44 E-value=0.058 Score=38.79 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
+...+..+|+|++|.+.|+++.|.++|+..
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~ 35 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDC 35 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 445567899999999999999888888763
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=88.39 E-value=0.038 Score=45.76 Aligned_cols=37 Identities=3% Similarity=0.021 Sum_probs=27.6
Q ss_pred cceEEeeceeeeccCceEeccccccc--CcccceEEccC
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKI--PYFNAPIYLQN 84 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~V--P~~na~V~~kn 84 (197)
..+|||+||.+.++++.|.++|+..- ....+.|+.+.
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 106 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence 45699999999999998888887644 55566666553
No 126
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.32 E-value=0.13 Score=35.36 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCCCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 41 FRDEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 41 ~~~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.....+|+.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 345678889999999999999988888876644333444443
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=88.17 E-value=0.1 Score=40.11 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.++..+|+|++|.+.++++.|.++++..-+.....|..+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~ 149 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 149 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec
Confidence 367799999999999999888888765443334444443
No 128
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=87.98 E-value=0.077 Score=36.16 Aligned_cols=36 Identities=8% Similarity=-0.056 Sum_probs=25.9
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 40 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 457999999999999988888877543333334443
No 129
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=87.98 E-value=0.061 Score=37.23 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=28.4
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
...+++.+|+|++|.+.++++.|.++|+..-+..+..|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~ 49 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTIC 49 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 456788999999999999998888887664433333333
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=87.96 E-value=0.061 Score=40.42 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+|+.+|+|+||.+.++++.|.++|...-
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 70 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYV 70 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 4567899999999999999988888887643
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=87.63 E-value=0.082 Score=41.22 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=27.8
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.+..+|+|.+|.+.++++.|.++|+..-+.....|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 56689999999999999888888776444344444443
No 132
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.47 E-value=0.093 Score=39.70 Aligned_cols=30 Identities=3% Similarity=0.052 Sum_probs=25.3
Q ss_pred CCCCCCcceEEe--eceeeeccCceEeccccc
Q 029223 42 RDEGPPAEVVEV--SSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 42 ~~~gPPs~vl~l--G~~sh~ce~dlV~K~~~~ 71 (197)
....+|+++|+| |+|++.++++.|.++|++
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~ 50 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEK 50 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 345689999999 779999999988888765
No 133
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=87.19 E-value=0.039 Score=38.36 Aligned_cols=36 Identities=3% Similarity=0.027 Sum_probs=25.7
Q ss_pred ceEEeeceeeeccCceEeccccccc--CcccceEEccC
Q 029223 49 EVVEVSSFLHACEGDAVTKLTNEKI--PYFNAPIYLQN 84 (197)
Q Consensus 49 ~vl~lG~~sh~ce~dlV~K~~~~~V--P~~na~V~~kn 84 (197)
.+|+|++|.+.++++.|.++|+..- +.....|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~ 39 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 39 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC
Confidence 3689999999999988888876543 55566666543
No 134
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=87.15 E-value=0.031 Score=38.07 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=23.2
Q ss_pred CCCcceEEeeceeeeccCceEecccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
..++.+|+|++|.+.++++.|.++|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4578999999999999998888877543
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=87.13 E-value=0.096 Score=41.84 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=28.5
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.+.|..+|||++|.+.++++.|.++|++.-+..+..|..+
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d 50 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD 50 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc
Confidence 3457789999999999999999998876555555555543
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=87.07 E-value=0.076 Score=38.73 Aligned_cols=36 Identities=8% Similarity=-0.100 Sum_probs=26.3
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
+..+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 70 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC 70 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 357999999999999988888887644444444443
No 137
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.00 E-value=0.17 Score=34.24 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=28.3
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
++|+.+|+|++|.+.++++.|.++++..-+.....|..
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 39 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL 39 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 46889999999999999988888876544433444443
No 138
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.93 E-value=0.081 Score=39.47 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCCCCcce-EEeeceeeeccCceEe
Q 029223 43 DEGPPAEV-VEVSSFLHACEGDAVT 66 (197)
Q Consensus 43 ~~gPPs~v-l~lG~~sh~ce~dlV~ 66 (197)
...||++| ++|+||.+.++.+.|.
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk 27 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVS 27 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHH
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHH
Confidence 34688888 7799999999987644
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.90 E-value=0.055 Score=37.60 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCCcceEEeeceeeeccCceEe----ccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVT----KLTNE 71 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~----K~~~~ 71 (197)
..+|+.+|+|++|.+.++++.|. ++++.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~ 35 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSR 35 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999887666 66544
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=86.76 E-value=0.064 Score=38.07 Aligned_cols=29 Identities=0% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCCCCcceEEeeceee-eccCceEeccccc
Q 029223 43 DEGPPAEVVEVSSFLH-ACEGDAVTKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh-~ce~dlV~K~~~~ 71 (197)
...||+.+|+|++|.+ .++++.|.++|+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~ 46 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSP 46 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGG
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHh
Confidence 3458899999999998 8988888887764
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=86.76 E-value=0.051 Score=43.98 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCc--ccceEEccC
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPY--FNAPIYLQN 84 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~--~na~V~~kn 84 (197)
.||+.+|+|+||.+.++++.|.++|++.-.. ....|+.++
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 5889999999999999999888888763332 455555544
No 142
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=86.72 E-value=0.064 Score=40.15 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=45.8
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEccCC--eeeeeeeEEecccCCceeEEeecCCccccccccCcEEE
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNK--TQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFY 123 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knk--t~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~Gdkly 123 (197)
+++.+|+|++|.+.++++.|.++|+..-+..+..|..+.. ...| |+ |+.+ ++...|..+..-+..+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g-----~a-----fV~f--~~~~~a~~A~~~~~~~ 152 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG-----FG-----FVTY--DSADAVDRVCQNKFID 152 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSE-----EE-----EEEE--SSHHHHHHHHHCSEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccce-----EE-----EEEE--CCHHHHHHHHhCCCEE
Confidence 4567999999999999988888876543333334433322 2223 22 4444 3332333222235566
Q ss_pred EcCCCCCcCCccCCC
Q 029223 124 IDPSKLLPLARFLPQ 138 (197)
Q Consensus 124 Idp~klLPLdrflPk 138 (197)
|+..+ |-+++..||
T Consensus 153 ~~g~~-i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRK-IEIKRAEPR 166 (167)
T ss_dssp SSSSC-EEEEECCCC
T ss_pred eCCeE-EEEeecCCC
Confidence 66666 777776555
No 143
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.17 E-value=0.18 Score=36.18 Aligned_cols=41 Identities=5% Similarity=0.039 Sum_probs=29.9
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
+..++..+|+|++|.+.++++.|.++|...-+.....|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~ 60 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD 60 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 44567899999999999999888888876444444444443
No 144
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=84.49 E-value=0.13 Score=37.72 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=28.8
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
...++.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 69 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 69 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 456778999999999999988888877644444444444
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=84.39 E-value=0.043 Score=40.83 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCCcceEEeeceeeeccCceEeccccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
.++...|+|+||.+.|+++.|.++|.+.-
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 45567999999999999988888876544
No 146
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=84.34 E-value=0.074 Score=37.41 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=21.0
Q ss_pred ceEEeeceeeeccCceEecccccccC
Q 029223 49 EVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 49 ~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
.+|+|++|.+.++++.|.++|++.-+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~ 26 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP 26 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 37999999999999888888765433
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=84.30 E-value=0.083 Score=42.58 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=27.3
Q ss_pred CCCcce--EEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEV--VEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~v--l~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.||+++ |+|+||++.++++.|.++|+..-......|+.+
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 567776 459999999999988888875433334445443
No 148
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.08 E-value=0.057 Score=38.00 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
+++.+|+|++|.+.++++.|.++|+..-+.....|..+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 43 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYD 43 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeC
Confidence 45689999999999999888888766444444444433
No 149
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=83.97 E-value=0.31 Score=34.01 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=27.5
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFN 77 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~n 77 (197)
...||..+|+|++|.+.++++.|.++|+..-+...
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEee
Confidence 34578899999999999999988888876443333
No 150
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=0.08 Score=39.11 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=25.0
Q ss_pred cceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
+.+|+|++|.|.|+++-|.++|+.. ......|.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~ 48 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLL 48 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEE
Confidence 4699999999999999888888764 33344444
No 151
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=83.83 E-value=0.061 Score=40.83 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCcceEEeeceeeeccCceEecccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
..++..+|+|++|.+.++++.|.++|+..
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~ 94 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKY 94 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34668999999999999998888887653
No 152
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=83.72 E-value=0.078 Score=37.99 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=27.5
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
-..+|+|+||.+.++++.|.++|++.-+.....|..+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d 54 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 54 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec
Confidence 3468999999999999988888876544445555543
No 153
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=83.58 E-value=0.16 Score=36.25 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=19.4
Q ss_pred CcceEEeeceeeeccC------ceEecccccc
Q 029223 47 PAEVVEVSSFLHACEG------DAVTKLTNEK 72 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~------dlV~K~~~~~ 72 (197)
++.+|+|++|.+.+++ +.|.++|+..
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~ 45 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF 45 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC
Confidence 4679999999999954 4566666553
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=83.41 E-value=0.098 Score=41.77 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=31.7
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEccCCeeee
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIG 89 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IG 89 (197)
++..|+|++|.+.++++.|.++|+..-+...+.|+.+..+..|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g 144 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 144 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCce
Confidence 4578999999999999999988876555555566655544444
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=83.23 E-value=0.21 Score=40.96 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
..+|+++|+|++|.+.|+++.|.++|+...+.....|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 45688999999999999999888888654444444444
No 156
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.17 E-value=0.26 Score=35.62 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=15.7
Q ss_pred CCCCCCcceEEeeceeeecc
Q 029223 42 RDEGPPAEVVEVSSFLHACE 61 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce 61 (197)
....+|+.||+|-|+.+..+
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~ 28 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMD 28 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTH
T ss_pred CCCCCCceEEEEEcCCCHHH
Confidence 35678899999999976654
No 157
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=83.06 E-value=0.081 Score=36.32 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.4
Q ss_pred ceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 49 EVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 49 ~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+|+|++|.+.++++.|.++|+..-+.....|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 4799999999999988888876544433444443
No 158
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=82.94 E-value=0.2 Score=37.84 Aligned_cols=79 Identities=8% Similarity=-0.038 Sum_probs=45.2
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEec-ccCCceeEEeecCCcccccccc-CcE
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFG-PINESYFSVKMMEGIVATSYSL-GDK 121 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFG-pIn~~Y~sVK~~d~v~a~s~~~-Gdk 121 (197)
..+++.+|+|++|.+.++++.|.+++... |.|..|.- ..+.-|.-|..++...|..... -+.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----------------g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDA----------------LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTC----------------SEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhc----------------CeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 34577899999999999998888887642 22222200 0111244454444333332222 244
Q ss_pred EEEcCCCCCcCCccCCCC
Q 029223 122 FYIDPSKLLPLARFLPQP 139 (197)
Q Consensus 122 lyIdp~klLPLdrflPkp 139 (197)
..|+..+ |-+++..|||
T Consensus 159 ~~~~g~~-i~v~~a~~k~ 175 (175)
T 1fje_B 159 AEIDGRS-VSLYYTGEKG 175 (175)
T ss_dssp EEETTEE-EEEEECSSCC
T ss_pred CEECCeE-EEEEecCCCC
Confidence 6667665 7777766664
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=82.38 E-value=0.14 Score=39.31 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCcceEEeeceeeeccCceEeccccc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
..+.+|+|++|.+.++++.|.++|++
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~ 27 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNA 27 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHH
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHH
Confidence 46789999999999999888888765
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=82.21 E-value=0.068 Score=41.71 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=27.7
Q ss_pred CcceEEeeceeeeccCceEeccccccc--CcccceEEccC
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKI--PYFNAPIYLQN 84 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~V--P~~na~V~~kn 84 (197)
...+|||++|.+.++++.|.++|+..- +.....|+.+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~ 93 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR 93 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC
Confidence 456999999999999988888876544 55566666553
No 161
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=81.52 E-value=0.29 Score=35.07 Aligned_cols=38 Identities=3% Similarity=-0.012 Sum_probs=28.0
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
..+|+.+|+|++|.+.++++.|.++|...-+.....|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~ 41 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG 41 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 45678999999999999998888887654433333333
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.78 E-value=0.26 Score=32.49 Aligned_cols=34 Identities=0% Similarity=-0.084 Sum_probs=25.2
Q ss_pred eEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 50 VVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 50 vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
+|+|++|.+.++++.|.++++..-+..+..|..+
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 35 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD 35 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC
Confidence 6899999999999888888876544444445443
No 163
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=79.76 E-value=0.23 Score=33.44 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=24.7
Q ss_pred CCCCcceEEeeceeeeccCceEecccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
..+|+.+|+|++|.+.++++.|.++++..
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~ 31 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPF 31 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGG
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhcc
Confidence 46789999999999999998888887653
No 164
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=79.71 E-value=0.28 Score=33.08 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=18.6
Q ss_pred cceEEeeceeeeccC------ceEecccccc
Q 029223 48 AEVVEVSSFLHACEG------DAVTKLTNEK 72 (197)
Q Consensus 48 s~vl~lG~~sh~ce~------dlV~K~~~~~ 72 (197)
+++|+|++|.+.+++ +.|.++|+..
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~ 31 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF 31 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc
Confidence 468999999999854 5666666543
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=79.58 E-value=0.25 Score=40.70 Aligned_cols=82 Identities=5% Similarity=-0.039 Sum_probs=45.5
Q ss_pred CCCCcceEEeeceeee-ccCceEecccccccCcccceEEccCC---eeeeeeeEEecccCCceeEEee-cCCcccccccc
Q 029223 44 EGPPAEVVEVSSFLHA-CEGDAVTKLTNEKIPYFNAPIYLQNK---TQIGKVDEIFGPINESYFSVKM-MEGIVATSYSL 118 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~-ce~dlV~K~~~~~VP~~na~V~~knk---t~IGkV~EIFGpIn~~Y~sVK~-~d~v~a~s~~~ 118 (197)
..++..+|+|.+|.+. ++++.|.++|+..-+.....|..+.. ...| |+ |+.++. +++..|- ..
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g-----~a-----fV~F~~~~~A~~A~-~l- 273 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNC-----CA-----FMVFENKDSAERAL-QM- 273 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCE-----EE-----EEEESSHHHHHHHG-GG-
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCce-----EE-----EEEeCCHHHHHHHH-Hh-
Confidence 3567899999999999 99988888876543333333333221 1112 22 444432 2233332 12
Q ss_pred CcEEEEcCCCCCcCCccCCCC
Q 029223 119 GDKFYIDPSKLLPLARFLPQP 139 (197)
Q Consensus 119 GdklyIdp~klLPLdrflPkp 139 (197)
+..+|...+ |-+++..|||
T Consensus 274 -~g~~~~g~~-i~V~~a~~k~ 292 (292)
T 2ghp_A 274 -NRSLLGNRE-ISVSLADKKP 292 (292)
T ss_dssp -TTEEETTEE-EEEEECCCCC
T ss_pred -cCCEECCcE-EEEEEecCCC
Confidence 225566555 7777766665
No 166
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.38 E-value=0.14 Score=36.86 Aligned_cols=34 Identities=6% Similarity=-0.099 Sum_probs=25.0
Q ss_pred ceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 49 EVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 49 ~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+|||++|.+.++++.|.++|+..-+..+..|..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS 59 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe
Confidence 5899999999999988888886644333444443
No 167
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=78.63 E-value=2.2 Score=31.81 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=27.7
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++..+.| .|.+++.+.+ |++..++-.||..+..++.
T Consensus 20 lL~~~igk~V-----~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e 59 (105)
T 4emh_A 20 LLNATQGRPI-----LVELKNGETFNGHLENCDNYMNLTLREVIR 59 (105)
T ss_dssp ------CCEE-----EEEETTSCEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHhCCCEE-----EEEECCCCEEEEEEEEEcCCceEEEEEEEE
Confidence 5555656667 8899998766 9999999999988888764
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=77.71 E-value=0.39 Score=38.64 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=24.1
Q ss_pred CCCcceEEeecee-eeccCceEeccccccc
Q 029223 45 GPPAEVVEVSSFL-HACEGDAVTKLTNEKI 73 (197)
Q Consensus 45 gPPs~vl~lG~~s-h~ce~dlV~K~~~~~V 73 (197)
+||+.||+|+||. +.++++.|.++|+..-
T Consensus 1 g~~~~~l~V~nL~~~~~~~~~L~~~F~~~G 30 (205)
T 3tyt_A 1 GADSPVLMVYGLDQSKMNCDRVFNVFCLYG 30 (205)
T ss_dssp -CCCSEEEEECCCTTTCCHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC
Confidence 4789999999999 8999998888886533
No 169
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=77.61 E-value=1.8 Score=30.01 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=30.9
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++..+.| .|.+++++.+ |++..++..+|..+..++.
T Consensus 9 ~L~~~~g~~V-----~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e 48 (75)
T 1d3b_A 9 VLHEAEGHIV-----TCETNTGEVYRGKLIEAEDNMNCQMSNITV 48 (75)
T ss_dssp HHHHTTTSEE-----EEEETTSCEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHhCCCEE-----EEEECCCcEEEEEEEEEccceeEEEEeEEE
Confidence 4455555667 8899999877 9999999999988877754
No 170
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=77.61 E-value=0.43 Score=33.58 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=29.6
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
...+|+.+|+|++|.+.++++.|.++|...-+.....|..
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 63 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 63 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 4567889999999999999988888876544434444443
No 171
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=77.23 E-value=0.54 Score=41.83 Aligned_cols=29 Identities=3% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCCCCcceEEeec--eeeeccCceEeccccc
Q 029223 43 DEGPPAEVVEVSS--FLHACEGDAVTKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~--~sh~ce~dlV~K~~~~ 71 (197)
-.++|+++|+|+| +++.++++.|.++|++
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~ 43 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEK 43 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 4579999999999 6889999888888875
No 172
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=77.22 E-value=0.18 Score=40.59 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=25.4
Q ss_pred CCCCCcceEEeeceee-eccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLH-ACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh-~ce~dlV~K~~~~~V 73 (197)
...||+.+|+|++|.+ .++++.|.++|+..-
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G 60 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYG 60 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCC
Confidence 4567889999999999 899988888876543
No 173
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=77.06 E-value=0.18 Score=38.25 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=21.2
Q ss_pred CCCCCcceEEeeceeeeccCce----Eeccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDA----VTKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dl----V~K~~~~ 71 (197)
...+|+.+|+|++|.+.++++. |.++|+.
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~ 56 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASS 56 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc
Confidence 3457889999999999987754 3345544
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=76.85 E-value=0.29 Score=36.14 Aligned_cols=37 Identities=5% Similarity=-0.066 Sum_probs=27.1
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
|+.+|+|++|.+.++++.|.++++..-+.....|..+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~ 37 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD 37 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 5789999999999999888888766444334444443
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=75.85 E-value=0.57 Score=38.36 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=22.7
Q ss_pred CCCCCcceEEeeceeeeccCceE----eccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAV----TKLTNE 71 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV----~K~~~~ 71 (197)
...+|+.+|+|++|.+.++++.| .++|..
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~ 36 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQ 36 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 45689999999999999988764 355544
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=75.47 E-value=0.18 Score=37.59 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=23.4
Q ss_pred CcceEEeeceeeeccCceEecccccccC
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
|+.+|+|++|.+.++++.|.+++++.-+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 29 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP 29 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 7889999999999999888888765433
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.39 E-value=0.53 Score=34.00 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=25.5
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPY 75 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~ 75 (197)
..++.+|||++|.+.++++.|.++|++.-+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i 35 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPL 35 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCE
Confidence 4567899999999999999888888765443
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=75.27 E-value=0.24 Score=37.11 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.4
Q ss_pred CcceEEeeceeeeccCceEecccccc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
++.+|+|++|.+.++++.|.+++++.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~ 28 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQ 28 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHH
Confidence 67899999999999998888887653
No 179
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.13 E-value=0.49 Score=34.16 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
....++.+|||++|++.++++.|.++|+..-+..+..|..
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~ 45 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 45 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE
Confidence 4456789999999999999998888887654444445544
No 180
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=74.01 E-value=0.29 Score=40.30 Aligned_cols=28 Identities=7% Similarity=-0.041 Sum_probs=23.3
Q ss_pred CCCcceEEeeceeeeccCceEecccccc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
.+++.+|+|++|.+.++++.|.++|+..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~ 46 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERY 46 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGG
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3566799999999999999888887654
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=73.51 E-value=0.32 Score=39.13 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
...||+.+|+|.+|.+.++++.|.+++++.
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~ 175 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSN 175 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTT
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHc
Confidence 345789999999999999988888877654
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=72.66 E-value=0.27 Score=38.04 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...||+.+|+|++|.+.++++.|.+++++.-
T Consensus 115 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 115 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred cCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 3458899999999999999888888776543
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=72.50 E-value=0.37 Score=35.30 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=30.9
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
++.+.-|+|+||++.++++.|.++|.+.-|..+..+++
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 56778899999999999999999988766666655554
No 184
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.25 E-value=0.56 Score=33.91 Aligned_cols=26 Identities=4% Similarity=0.031 Sum_probs=22.0
Q ss_pred CCcceEEeeceeeeccCceEeccccc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
.++.+|+|+||.+.++++.|.++|..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~ 33 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSR 33 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35689999999999999888888764
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.75 E-value=0.42 Score=39.35 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=27.9
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEccC
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn 84 (197)
..+++.+|+|++|.+.++++.|.++|+..-+..+..|..+.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 77 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL 77 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 34678899999999999999888888765555555555443
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=68.13 E-value=0.3 Score=37.91 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
+++.+|+|++|.+.++++.|.++|++.-+.....|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 61 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMS 61 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEe
Confidence 466899999999999998888888654433333443
No 187
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=67.33 E-value=0.29 Score=32.17 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=19.3
Q ss_pred eEEeeceeeeccCceEecccccc
Q 029223 50 VVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 50 vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
+|+|++|++.++++.|.+++++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999998888887653
No 188
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=66.88 E-value=0.44 Score=31.35 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=20.0
Q ss_pred eEEeeceeeeccCceEecccccccC
Q 029223 50 VVEVSSFLHACEGDAVTKLTNEKIP 74 (197)
Q Consensus 50 vl~lG~~sh~ce~dlV~K~~~~~VP 74 (197)
.|+|++|.+.++++.|.+++++.-+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~ 25 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGK 25 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCC
Confidence 3789999999999888888765433
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=66.81 E-value=1.2 Score=32.97 Aligned_cols=29 Identities=3% Similarity=-0.219 Sum_probs=20.3
Q ss_pred CCCCCcceEEeeceeeeccCceEeccccccc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKI 73 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~V 73 (197)
...+++.+|+|+++ .++++.|.++|+..-
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G 62 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFG 62 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccC
Confidence 34467899999994 577777777776543
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=66.75 E-value=0.76 Score=34.26 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.+++.+|+|++|.+.++++.|.++++..-+.....|..+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 455789999999999999888888775444444444443
No 191
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=66.48 E-value=1.4 Score=29.99 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceE
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPI 80 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V 80 (197)
.++.+|+|++|.+.++++.|.++|++. +.....|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i 36 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV 36 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE
Confidence 467899999999999998888887765 4444444
No 192
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=65.82 E-value=0.43 Score=36.67 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=41.4
Q ss_pred ccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEeecCCccccccccC-cEEEEcCCCCCc
Q 029223 60 CEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLG-DKFYIDPSKLLP 131 (197)
Q Consensus 60 ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~a~s~~~G-dklyIdp~klLP 131 (197)
++++.|=. ++..|=.-|...+-+.+++.|.|+|++.+|+.. ..|+..+....+.+.+. +|+.- -++|||
T Consensus 45 ~~~~~VP~-fNapVy~enK~~IGKVdEIFGPin~~YfsVK~~-~gv~a~Sfk~gdk~YId~~kllP-l~rFlp 114 (114)
T 3u28_C 45 SINTKIPY-FNAPIYLENKTQVGKVDEILGPLNEVFFTIKCG-DGVQATSFKEGDKFYIAADKLLP-IERFLP 114 (114)
T ss_dssp ECSSSEEC-TTCEEECTTCCEEEEEEEEESBTTSCEEEEEEC-TTCCGGGCCTTCEEEEEGGGEEC-GGGGCC
T ss_pred eCCCCCCC-CCCEeEccCCccceeEeEEeCCCCccEEEEEec-CCCcccccccCCEEEECccccCc-HHhcCC
Confidence 34444443 444444456678888999999999999999864 33443333333445554 44543 356665
No 193
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=65.31 E-value=7 Score=30.62 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=34.5
Q ss_pred cceEEeeceeee--ccCceEecccc-cccCcccceEEccC--CeeeeeeeEEecccCCc
Q 029223 48 AEVVEVSSFLHA--CEGDAVTKLTN-EKIPYFNAPIYLQN--KTQIGKVDEIFGPINES 101 (197)
Q Consensus 48 s~vl~lG~~sh~--ce~dlV~K~~~-~~VP~~na~V~~kn--kt~IGkV~EIFGpIn~~ 101 (197)
..|.+||++... ..+.++.++.+ .+| .|.+.. ...+.+++||.|.++..
T Consensus 44 k~VriVGkV~~~~~~G~~~~l~s~Dg~~V-----tV~l~~pL~~~~~~~VEViG~V~~~ 97 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTGKMFILSDGEGKNG-----TIELMEPLDEEISGIVEVVGRVTAK 97 (142)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEE-----EEECSSCCSSCCCSEEEEEEEECTT
T ss_pred CEEEEEEEEeEEcCCCCEEEEEeCCCcEE-----EEEeCCCCCccCCCEEEEEEEECCC
Confidence 568899999988 55567777753 355 555543 44568899999977764
No 194
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=64.65 E-value=0.69 Score=34.33 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=22.6
Q ss_pred CcceEEeeceeeeccCceEecccccc
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEK 72 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~ 72 (197)
|+.+|+|++|.+.++++.|.++|+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~ 27 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY 27 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC
Confidence 67899999999999998888887654
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=63.56 E-value=1.1 Score=33.20 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=28.7
Q ss_pred CcceEEeeceeeeccCceEecccccccCcccceEEccC
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQN 84 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~kn 84 (197)
.+.+|+|++|.+.++++.|.++|++.-+..+..|..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 39 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR 39 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence 57899999999999999888888765454455555443
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=62.47 E-value=1.7 Score=35.51 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=28.0
Q ss_pred CCCCcceEEeeceeee-ccCceEecccccccCcccceEEc
Q 029223 44 EGPPAEVVEVSSFLHA-CEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~-ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..++..+|+|.+|.+. |+++.|.++++..-+..+..|..
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 4467889999999999 57788888877644444444444
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=61.00 E-value=0.22 Score=37.59 Aligned_cols=28 Identities=7% Similarity=-0.057 Sum_probs=22.5
Q ss_pred CCCCcceEEeeceeeeccCceEeccccc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNE 71 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~ 71 (197)
...++.+|+|++|.+.++++.|.+++.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~ 36 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE 36 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 4567899999999999998877766554
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=60.01 E-value=0.78 Score=38.80 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=20.2
Q ss_pred CCCcceEEeeceeeecc---------CceEeccccc
Q 029223 45 GPPAEVVEVSSFLHACE---------GDAVTKLTNE 71 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce---------~dlV~K~~~~ 71 (197)
.++..+|||++|.+.++ ++.|.++|++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~ 166 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR 166 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc
Confidence 56789999999999883 4556666554
No 199
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=59.54 E-value=1.1 Score=32.84 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=25.2
Q ss_pred ceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 49 EVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 49 ~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.+|+|++|.+.++++.|.++++..-+..+..|..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~ 34 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI 34 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3799999999999988888887654444444443
No 200
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=55.93 E-value=16 Score=29.43 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=27.1
Q ss_pred cccceEEccCCeeeeeeeEEecccCCceeEEeecC
Q 029223 75 YFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME 109 (197)
Q Consensus 75 ~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d 109 (197)
.++..|++++.+.+|+|+||+=+-.+++..|+..+
T Consensus 118 LIGl~V~~~~g~~lG~V~~v~~~ganDvlvV~~~~ 152 (187)
T 2f1l_A 118 LEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCA 152 (187)
T ss_dssp HTTCEEEETTSCEEEEEEEEECCSSSCEEEEECCT
T ss_pred cCCeEEEeCCCCEEEEEEEEccCCCcEEEEEEeCC
Confidence 35789999999999999999975545556777543
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=55.28 E-value=1 Score=31.68 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=24.5
Q ss_pred CcceEEeeceee------eccCceEecccccccCcccceEE
Q 029223 47 PAEVVEVSSFLH------ACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 47 Ps~vl~lG~~sh------~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
.+++|||++|.+ .+.++.|.++|+..-+.....|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~ 45 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFP 45 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEE
Confidence 578999999999 77777777777654333333333
No 202
>2kk4_A Uncharacterized protein AF_2094; protein of unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=54.84 E-value=16 Score=26.67 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=25.7
Q ss_pred EccCCeeeeeeeEEecccCCceeEEeecCCcc---ccccc--cCcEEEEc
Q 029223 81 YLQNKTQIGKVDEIFGPINESYFSVKMMEGIV---ATSYS--LGDKFYID 125 (197)
Q Consensus 81 ~~knkt~IGkV~EIFGpIn~~Y~sVK~~d~v~---a~s~~--~GdklyId 125 (197)
+.++.+.||.-.|||. .|..||..+... ++++. ..|++||.
T Consensus 11 V~K~g~~~GESIDV~~----~~LivKvgt~F~~ipl~~i~~ve~~ri~i~ 56 (95)
T 2kk4_A 11 VFKGEESFGESIDVYG----DYLIVKVGTEFLAVPKKSIKSVEDGRIVIG 56 (95)
T ss_dssp EEETTEEEEEEEEEET----TEEEEEETTEEEEEETTTEEEEETTEEEEC
T ss_pred EecCcceecceeeeec----cEEEEEecCeEEeeeHHHhhhccCCeEEEe
Confidence 3457788888888887 566777655332 23322 25888884
No 203
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=54.34 E-value=20 Score=25.75 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.1
Q ss_pred ccceEEccCCeeeeeeeEEecccCC
Q 029223 76 FNAPIYLQNKTQIGKVDEIFGPINE 100 (197)
Q Consensus 76 ~na~V~~knkt~IGkV~EIFGpIn~ 100 (197)
.+..||+++.+.+|+|+||.--++.
T Consensus 28 ~Gk~Vin~dG~~LG~V~Dv~iD~~~ 52 (97)
T 1pm3_A 28 VGKEVLDSSAKVIGKVKDVEVDIES 52 (97)
T ss_dssp SSCEEECTTSCEEEEEEEEEEETTT
T ss_pred CCCEeECCCCCEEeEEEEEEEECCC
Confidence 4678999999999999999986653
No 204
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=53.38 E-value=2.9 Score=30.48 Aligned_cols=41 Identities=5% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCCCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 43 DEGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 43 ~~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
...+++.+|+|++|.+.++++.|.++++..-+.....|..+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 34577889999999999999888888866444444445433
No 205
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=52.30 E-value=2 Score=31.43 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=27.7
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.+++.+|+|.+|.+.++++.|.++++..-+.....|..+
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 356789999999999999888888765444334444433
No 206
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=52.02 E-value=17 Score=27.51 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred cceEEeeceeeec--cCceEecccc-cccCcccceEEccC--CeeeeeeeEEecccCCc
Q 029223 48 AEVVEVSSFLHAC--EGDAVTKLTN-EKIPYFNAPIYLQN--KTQIGKVDEIFGPINES 101 (197)
Q Consensus 48 s~vl~lG~~sh~c--e~dlV~K~~~-~~VP~~na~V~~kn--kt~IGkV~EIFGpIn~~ 101 (197)
..|.+||++...- .+.++.++.+ .+| .|.+.. .+.+.+++||.|-++..
T Consensus 23 k~VrivGkV~~~~~~g~~~~l~s~Dg~~V-----tv~l~~p~~~~l~~~vEViG~V~~~ 76 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGKMFILSDGEGKNG-----TIELMEPLDEEISGIVEVVGRVTAK 76 (121)
T ss_dssp CEEEEEEEEEEECTTSSEEEEECTTSCEE-----EEECSSCCSSCCCSEEEEEEEECTT
T ss_pred CeEEEEEEEEEEcCCCCEEEEEeCCCCEE-----EEEeCCCCCcccCcEEEEEEEECCC
Confidence 5688999999664 4467777754 355 555554 45556789999977765
No 207
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=51.68 E-value=13 Score=31.60 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=24.9
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEE
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSV 105 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sV 105 (197)
.|.++.+++| .|.+++.+.+ |++..++-.+|.++.++
T Consensus 8 kL~klIdKrV-----~V~LkdGRel~GtLkgFDq~MNLVL~Da 45 (231)
T 3pgw_B 8 KMLQHIDYRM-----RCILQDGRIFIGTFKAFDKHMNLILCDC 45 (231)
T ss_pred HHHHhcCCeE-----EEEECCCcEEEEEEEEEcccccEEecCE
Confidence 3444555566 7777777655 99999888787764444
No 208
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=50.26 E-value=16 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.2
Q ss_pred cccccccCcccceEEccCCeee-eeeeEEecccCCceeEEeecCC
Q 029223 67 KLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKMMEG 110 (197)
Q Consensus 67 K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~~d~ 110 (197)
++.++.| .|.+++.+.+ |++..++-.||..+..++..+.
T Consensus 7 ~~igk~V-----~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~ 46 (130)
T 1m5q_A 7 NLLGREV-----QVVLSNGEVYKGVLHAVDNQLNIVLANASNKAG 46 (130)
T ss_dssp HTTTSEE-----EEEETTSCEEEEEEEEECTTCCEEEEEEECTTC
T ss_pred HhCCCeE-----EEEECCCcEEEEEEEEEcccceeEEeeEEEEcC
Confidence 4444556 7888888655 9999999999988888865543
No 209
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=49.01 E-value=34 Score=27.51 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=41.3
Q ss_pred CCCCcceEEeecee--eeccCceEecccccccCcc--cceEEccCC-e-eeeeeeEEecccCCceeEEee--cCCccccc
Q 029223 44 EGPPAEVVEVSSFL--HACEGDAVTKLTNEKIPYF--NAPIYLQNK-T-QIGKVDEIFGPINESYFSVKM--MEGIVATS 115 (197)
Q Consensus 44 ~gPPs~vl~lG~~s--h~ce~dlV~K~~~~~VP~~--na~V~~knk-t-~IGkV~EIFGpIn~~Y~sVK~--~d~v~a~s 115 (197)
+-||++.+.||.+. |-...++-++++.+..-.| ...++++.. . ..=+|.++-- .+. .+.+|. -+...+..
T Consensus 14 ~~~~~~~v~VG~I~~~hGikGeVkV~~~Td~pe~~~~~~~~~l~~~~~~~~~~v~~~r~-~~~-~~ivkf~gi~dr~~Ae 91 (187)
T 2f1l_A 14 PTPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRL-HGK-VLAAKLKGLDDREEAR 91 (187)
T ss_dssp -----CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEEE-ETT-EEEEEETTCCSHHHHH
T ss_pred CCCCCCEEEEEEEeCCEeeCEEEEEEECCCCHHHhccCCEEEEecCCcEEEEEEEEEEE-ECC-EEEEEEeCCCCHHHHH
Confidence 35899999999996 4456677676544322111 234444322 1 1113333321 122 233443 22333334
Q ss_pred cccCcEEEEcCCCCCcC
Q 029223 116 YSLGDKFYIDPSKLLPL 132 (197)
Q Consensus 116 ~~~GdklyIdp~klLPL 132 (197)
.+.+..+||+.+.|-+|
T Consensus 92 ~L~G~~l~v~r~~lp~l 108 (187)
T 2f1l_A 92 TFTGYEICIPRSELPSL 108 (187)
T ss_dssp TTTTCEEEEEGGGSCC-
T ss_pred HhCCCEEEEEHHHCCCC
Confidence 45789999998885445
No 210
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=47.29 E-value=22 Score=28.20 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=27.2
Q ss_pred cccceEEccCCeeeeeeeEEecccCCceeEEeec
Q 029223 75 YFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMM 108 (197)
Q Consensus 75 ~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~ 108 (197)
.++..|++++.+.+|+|+||+=+-.+++..|+..
T Consensus 100 LiGl~V~~~~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 100 LIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTTCEEEETTCCEEEEEEEEEESSSCEEEEEECC
T ss_pred hcCCEEEeCCCCEEEEEEEEeeCCCcEEEEEEec
Confidence 4678999999999999999998555566677753
No 211
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=46.38 E-value=1.8 Score=33.34 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=21.5
Q ss_pred cceEEeeceee-eccCceEeccccccc
Q 029223 48 AEVVEVSSFLH-ACEGDAVTKLTNEKI 73 (197)
Q Consensus 48 s~vl~lG~~sh-~ce~dlV~K~~~~~V 73 (197)
+.+|+|++|.+ .++++.|.++|+..-
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G 29 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG 29 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC
Confidence 57999999999 899888888876543
No 212
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=46.37 E-value=8.7 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=25.2
Q ss_pred eccCceEecccccccCcccceEEccCCeee-eeeeEEec
Q 029223 59 ACEGDAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 59 ~ce~dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
+.++.++-.+-.+++|. .||+.|+.++ |+|...+=
T Consensus 10 nlQd~fLn~lrk~~~~V---tv~L~nG~~l~G~I~~fD~ 45 (78)
T 3ahu_A 10 NIQDQFLNQIRKENTYV---TVFLLNGFQLRGQVKGFDN 45 (78)
T ss_dssp CHHHHHHHHHHHHTCCE---EEEETTSCEEEEEEEEECS
T ss_pred ChHHHHHHHHHHcCCcE---EEEEeCCeEEEEEEEEEcc
Confidence 34444555555556765 9999999988 99999665
No 213
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=45.12 E-value=13 Score=27.07 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=29.7
Q ss_pred ceEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEe
Q 029223 63 DAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVK 106 (197)
Q Consensus 63 dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK 106 (197)
++|.++..++| .|++++.+.+ |++..++-.+|..+..++
T Consensus 23 ~lL~~~l~k~V-----~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~ 62 (94)
T 4emk_A 23 ELIDKCIGSNL-----WVIMKSEREFAGTLVGFDDYVNIVLKDVT 62 (94)
T ss_dssp HHHHHTTTSEE-----EEEESSSEEEEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHcCCeE-----EEEECCCcEEEEEEEEEcccCCeEeeeEE
Confidence 35555555666 8899988766 999999998888777664
No 214
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=43.76 E-value=61 Score=23.98 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=39.6
Q ss_pred CcceEEeeceeeeccCceEecccc-cccCcccceEEccCCe--eeeeeeEEecccCCc-----eeEEeecC
Q 029223 47 PAEVVEVSSFLHACEGDAVTKLTN-EKIPYFNAPIYLQNKT--QIGKVDEIFGPINES-----YFSVKMME 109 (197)
Q Consensus 47 Ps~vl~lG~~sh~ce~dlV~K~~~-~~VP~~na~V~~knkt--~IGkV~EIFGpIn~~-----Y~sVK~~d 109 (197)
...|..||++...-.+.+++++.+ .+| .|.+.... .+++++||.|.++.. =.+|+..+
T Consensus 18 g~~VrivGkV~~~~g~~~~l~s~d~~~V-----tv~l~~~~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~ 83 (114)
T 4gop_A 18 GQTVRIVGKVHKVTGNTLLMQTSDLGNV-----EIAMTPDSDVSSSTFVEVTGKVSDAGSSFQANQIREFT 83 (114)
T ss_dssp TSEEEEEEEEEEEETTEEEEECTTSCEE-----EEECCSSCCGGGCSEEEEEEEECTTSSEEEEEEEEECS
T ss_pred CCeEEEEEEEeeeCCCEEEEEeCCCCEE-----EEEeCCCCCcccCcEEEEEEEEcCCCCcccCCeEEEEE
Confidence 356889999998888788888753 345 45554332 358999999977754 14666544
No 215
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=42.75 E-value=5.9 Score=29.00 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=28.4
Q ss_pred CCCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 44 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
..+++.+|+|.+|.+.++++.|.++++..-+.....|..
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 123 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 123 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEE
Confidence 456789999999999999988888876544333334443
No 216
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=42.58 E-value=5.1 Score=32.57 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=28.6
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
.|++.+|+|++|.+.++++.|.++++..-+..+..|..
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 57889999999999999988888877644444444443
No 217
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.06 E-value=6.6 Score=28.70 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.4
Q ss_pred CCCCCcceEEeecee
Q 029223 43 DEGPPAEVVEVSSFL 57 (197)
Q Consensus 43 ~~gPPs~vl~lG~~s 57 (197)
.++||+-|++|-..+
T Consensus 2 ~~GPpd~tv~V~~~~ 16 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKS 16 (91)
T ss_dssp CCCCSSCEEEEEEEC
T ss_pred CCCCCCCeEEEEecc
Confidence 579999999987655
No 218
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=40.34 E-value=13 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=23.9
Q ss_pred ccCceEecccccccCcccceEEccCCeee-eeeeEEec
Q 029223 60 CEGDAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 60 ce~dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
.++.++-.+-.+++|. .|++.|+.++ |+|...+-
T Consensus 9 lQd~~L~~lrk~k~~V---ti~L~nG~~l~G~I~~fD~ 43 (74)
T 2ylb_A 9 LQDPFLNALRRERVPV---SIYLVNGIKLQGQIESFDQ 43 (74)
T ss_dssp CHHHHHHHHHHHTCCE---EEEETTSCEEEEEEEEECS
T ss_pred cHHHHHHHHHhcCCcE---EEEEeCCCEEEEEEEEECC
Confidence 3444554454456655 9999999988 99988665
No 219
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=39.82 E-value=35 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=25.9
Q ss_pred ccceEEccCCeeeeeeeEEecccCCceeEEeecC
Q 029223 76 FNAPIYLQNKTQIGKVDEIFGPINESYFSVKMME 109 (197)
Q Consensus 76 ~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~~d 109 (197)
++..|+ ++.+.+|+|+||+=+-.+++..|+..+
T Consensus 95 iGl~V~-~~g~~lG~V~~v~~~ga~dvl~V~~~~ 127 (162)
T 2dyi_A 95 IGLPVY-VEGRQVGEVVDILDAGAQDVLIIRGVG 127 (162)
T ss_dssp TTCEEE-ETTEEEEEEEEEEEETTEEEEEEEECC
T ss_pred CCeEEE-ECCeEEEEEEEEccCCCceEEEEEeCC
Confidence 678999 889999999999975555556777644
No 220
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=39.67 E-value=25 Score=25.25 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=27.6
Q ss_pred EecccccccCcccceEEccCC-eee-eeeeEEecccCCceeEEee
Q 029223 65 VTKLTNEKIPYFNAPIYLQNK-TQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 65 V~K~~~~~VP~~na~V~~knk-t~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
|.++..++| .|.++++ +.+ |++..++-.+|..+..++.
T Consensus 26 L~~~i~k~V-----~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E 65 (93)
T 1n9r_A 26 LKGLVNHRV-----GVKLKFNSTEYRGTLVSTDNYFNLQLNEAEE 65 (93)
T ss_dssp CGGGTTSEE-----EEEESSTTEEEEEEEEECCTTTCEEEEEEEE
T ss_pred HHHhCCCEE-----EEEEcCCCEEEEEEEEEEccccEEEEeeEEE
Confidence 333444455 7888888 544 9999999999888777753
No 221
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=37.21 E-value=6.1 Score=29.08 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=26.8
Q ss_pred CCCcceEEeeceeeeccCceEecccccccCcccceEE
Q 029223 45 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIY 81 (197)
Q Consensus 45 gPPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~ 81 (197)
.+++.+|+|++|.+.++++.|.++++..-+.....|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 128 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL 128 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEE
Confidence 4577899999999999998888887654333333443
No 222
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=37.02 E-value=20 Score=25.82 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=23.7
Q ss_pred cCceEecccccccCcccceEEccCCeee-eeeeEEec
Q 029223 61 EGDAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 61 e~dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
++.++-.+-.+++|. .||+.|+.++ |+|...+=
T Consensus 8 Qd~fLn~lrk~~~~V---tv~L~NG~~l~G~I~~fD~ 41 (82)
T 1u1s_A 8 QDPYLNTLRKERVPV---SIYLVNGIKLQGQIESFDQ 41 (82)
T ss_dssp HHHHHHHHHHTTCCE---EEEETTSCEEEEEEEEECS
T ss_pred HHHHHHHHHHcCCcE---EEEEeCCcEEEEEEEEEcc
Confidence 344444444456665 9999999988 99999665
No 223
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=36.96 E-value=23 Score=23.95 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.3
Q ss_pred EecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 65 VTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 65 V~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
|.++..++| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 9 L~~~~~~~V-----~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e 47 (75)
T 1h64_1 9 IHRSLDKDV-----LVILKKGFEFRGRLIGYDIHLNVVLADAEM 47 (75)
T ss_dssp HHTTTTSEE-----EEEETTSEEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHCCCEE-----EEEECCCCEEEEEEEEEeCCCCeEEeeEEE
Confidence 344445556 7888888766 9999999988887777643
No 224
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=36.90 E-value=19 Score=25.44 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=29.4
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEe
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVK 106 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK 106 (197)
+|.++.+++| .|.+++.+.+ |++..++-.+|..+..++
T Consensus 10 ~L~~~~~k~V-----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~ 48 (86)
T 3s6n_F 10 FLNGLTGKPV-----MVKLKWGMEYKGYLVSVDGYMNMQLANTE 48 (86)
T ss_dssp HHHHHTTSEE-----EEEETTSCEEEEEEEEECTTCCEEEEEEE
T ss_pred HHHHhCCCeE-----EEEEcCCeEEEEEEEEEcCceEEEEeeEE
Confidence 4455555666 7888888766 999999998988877775
No 225
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=36.59 E-value=22 Score=24.08 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=28.0
Q ss_pred EecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 65 VTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 65 V~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
|.++.++.| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 9 L~~~~~~~V-----~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e 47 (77)
T 1i4k_A 9 LNRSLKSPV-----IVRLKGGREFRGTLDGYDIHMNLVLLDAEE 47 (77)
T ss_dssp HHTTTTSEE-----EEEETTSCEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHhCCCEE-----EEEEcCCCEEEEEEEEEcCCCCeEEeeEEE
Confidence 344445556 7888888766 9999999988887777653
No 226
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=36.46 E-value=4.2 Score=32.32 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=26.2
Q ss_pred cceEEeeceeeeccCceEecccccccCcccceEEc
Q 029223 48 AEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYL 82 (197)
Q Consensus 48 s~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~ 82 (197)
+.+|+|++|.+.++++.|.++|+..-+..+..|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 36899999999999998988887654444444443
No 227
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=36.09 E-value=45 Score=28.72 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=25.1
Q ss_pred ccceEEccCCeeeeeeeEEecccCC---ceeEEee
Q 029223 76 FNAPIYLQNKTQIGKVDEIFGPINE---SYFSVKM 107 (197)
Q Consensus 76 ~na~V~~knkt~IGkV~EIFGpIn~---~Y~sVK~ 107 (197)
...+|+..++++||+|+||+--..+ -|..|..
T Consensus 149 ~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdt 183 (260)
T 1rzh_H 149 IGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVEL 183 (260)
T ss_dssp TTCEEEETTSCEEEEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEe
Confidence 3668999999999999999984432 3777765
No 228
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=35.49 E-value=42 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=25.4
Q ss_pred ccceEEcc----CCeeeeeeeEEecccCCceeEEee
Q 029223 76 FNAPIYLQ----NKTQIGKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 76 ~na~V~~k----nkt~IGkV~EIFGpIn~~Y~sVK~ 107 (197)
++..|+++ +.+.+|+|.+|+=+-.+++..|+.
T Consensus 110 iGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~ 145 (182)
T 2qgg_A 110 KGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRA 145 (182)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEe
Confidence 57899998 888999999999755555567775
No 229
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=35.23 E-value=22 Score=24.22 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=28.2
Q ss_pred eEecccccccCcccceEEccCC-ee-eeeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNK-TQ-IGKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knk-t~-IGkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++..++| .|.+++. +. +|++..++-.+|..+..++.
T Consensus 9 ~L~~~~~~~v-----~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e 49 (77)
T 1ljo_A 9 MVKSMVGKII-----RVEMKGEENQLVGKLEGVDDYMNLYLTNAME 49 (77)
T ss_dssp HHHHTTTSEE-----EEEETTCSSEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHHCCCEE-----EEEEeCCCEEEEEEEEEECCcceEEEeeEEE
Confidence 3444555556 7888888 54 49999999988888777653
No 230
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=35.02 E-value=7.3 Score=31.71 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=27.7
Q ss_pred CCcceEEeeceeeeccCceEecccccccCcccceEEcc
Q 029223 46 PPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQ 83 (197)
Q Consensus 46 PPs~vl~lG~~sh~ce~dlV~K~~~~~VP~~na~V~~k 83 (197)
.|+.+|+|++|.+.++++.|.++|...-+...+.|+.+
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 46789999999999999888888765444444444433
No 231
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=34.99 E-value=13 Score=29.16 Aligned_cols=41 Identities=2% Similarity=-0.092 Sum_probs=31.2
Q ss_pred ceEEeece----eeeccCceEecccccccCcccceEEccCCe--eee
Q 029223 49 EVVEVSSF----LHACEGDAVTKLTNEKIPYFNAPIYLQNKT--QIG 89 (197)
Q Consensus 49 ~vl~lG~~----sh~ce~dlV~K~~~~~VP~~na~V~~knkt--~IG 89 (197)
..|+|++| +|.++++.|..+|.+.-+...+.++.+..| ..|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slG 49 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLH 49 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceee
Confidence 57899999 999999999998887555556666666665 446
No 232
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=33.51 E-value=24 Score=24.30 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=29.3
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++..++| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 13 ~L~~~~~~~V-----~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e 52 (81)
T 1th7_A 13 VLAESLNNLV-----LVKLKGNKEVRGMLRSYDQHMNLVLSDSEE 52 (81)
T ss_dssp HHHHHTTSEE-----EEEETTTEEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHhCCCeE-----EEEEcCCcEEEEEEEEEcCCCCEEEccEEE
Confidence 4444555556 8888888766 9999999988888777753
No 233
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=33.39 E-value=25 Score=24.36 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=28.9
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++.++.| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 19 ~L~~~~~~~V-----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e 58 (83)
T 1mgq_A 19 ALGNSLNSPV-----IIKLKGDREFRGVLKSFDLHMNLVLNDAEE 58 (83)
T ss_dssp HHHHTTTSEE-----EEEETTTEEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHhCCCEE-----EEEEcCCcEEEEEEEEECCCceeEEccEEE
Confidence 4444545555 7888888766 9999999988887777643
No 234
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=33.38 E-value=54 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=25.2
Q ss_pred ccceEEccCCeeeeeeeEEecccCC---ceeEEee
Q 029223 76 FNAPIYLQNKTQIGKVDEIFGPINE---SYFSVKM 107 (197)
Q Consensus 76 ~na~V~~knkt~IGkV~EIFGpIn~---~Y~sVK~ 107 (197)
...+|+..++++||+|+||+--..+ -|..|..
T Consensus 153 ~G~~Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdt 187 (258)
T 2wjn_H 153 RGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELSV 187 (258)
T ss_dssp TTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEeEcCCCCeeEEEEEEEEECCCCEEEEEEEEc
Confidence 3668999999999999999984432 3777766
No 235
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=32.45 E-value=22 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=24.5
Q ss_pred ccCceEecccccccCcccceEEccCCeee-eeeeEEec
Q 029223 60 CEGDAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 60 ce~dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
.++.+|-.+-.+++|. .|||.|+.++ |+|...+=
T Consensus 9 lQd~fLn~lrk~k~~V---tI~LvNG~~L~G~I~~fD~ 43 (104)
T 2y90_A 9 LQDPFLNALRRERVPV---SIYLVNGIKLQGQIESFDQ 43 (104)
T ss_dssp CHHHHHHHHHHTTCCE---EEEETTSCEEEEEEEEECS
T ss_pred cHHHHHHHHHhcCCcE---EEEEeCCCEEEEEEEEECC
Confidence 3444555555566766 9999999888 99998665
No 236
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=32.14 E-value=34 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=24.2
Q ss_pred ccceEEccCCeeeeeeeEEecccC---CceeEEee
Q 029223 76 FNAPIYLQNKTQIGKVDEIFGPIN---ESYFSVKM 107 (197)
Q Consensus 76 ~na~V~~knkt~IGkV~EIFGpIn---~~Y~sVK~ 107 (197)
....|++.+.+.||+|+||+--.+ ..|+.|..
T Consensus 21 ~G~~V~~~dG~~iG~V~dv~iD~~~G~i~~~vv~~ 55 (120)
T 3htr_A 21 QGTAVYGPDGEKIGSIERVMIEKVSGRVSYAVLSF 55 (120)
T ss_dssp TTCEEECTTSCEEEEEEEEEEETTTCBEEEEEEEE
T ss_pred cCCEEEcCCCCEEEEEEEEEEECCCCcEEEEEEEC
Confidence 467899999999999999997442 23666654
No 237
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=31.45 E-value=1.2e+02 Score=23.59 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=38.7
Q ss_pred eEEeecee--eeccCceEecccccccCcccceEEccCCeeeeeeeEEecccCCceeEEee--cCCccccccccCcEEEEc
Q 029223 50 VVEVSSFL--HACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKM--MEGIVATSYSLGDKFYID 125 (197)
Q Consensus 50 vl~lG~~s--h~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFGpIn~~Y~sVK~--~d~v~a~s~~~GdklyId 125 (197)
.+.||.+. |-...++-+ .++... .-..+++++....+ +|.++-- .+. .+.+|. -+...+.....+..+||+
T Consensus 3 ~v~vG~I~~~hGikGevkv-~td~~~-~~~~~~~~~~~~~~-~v~~~r~-~~~-~~ivkf~gi~~r~~Ae~L~G~~l~v~ 77 (162)
T 2dyi_A 3 LVEIGRFGAPYALKGGLRF-RGEPVV-LHLERVYVEGHGWR-AIEDLYR-VGE-ELVVHLAGVTDRTLAEALVGLRVYAE 77 (162)
T ss_dssp EEEEEEEEEECSSSSCEEE-EECGGG-GGCSEEEETTTEEE-EEEEEEE-ETT-EEEEEETTCCSHHHHHTTTTCEEEEE
T ss_pred EEEEEEEeCCCccCeEEEE-EEchHh-cCCCEEEEeCCCEE-EEEEEEE-ECC-EEEEEEcCCCCHHHHHHhCCCEEEEE
Confidence 46677664 334455544 332211 11234555544444 6666542 222 234444 223333344578999999
Q ss_pred CCCCCcC
Q 029223 126 PSKLLPL 132 (197)
Q Consensus 126 p~klLPL 132 (197)
.+.+-+|
T Consensus 78 ~~~lp~l 84 (162)
T 2dyi_A 78 VADLPPL 84 (162)
T ss_dssp GGGSCCC
T ss_pred HHHCCCC
Confidence 8885444
No 238
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=30.77 E-value=25 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.1
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEe
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVK 106 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK 106 (197)
+|.++..++| .|.+++.+.+ |++..++-.+|..+..++
T Consensus 8 ~L~~~~~k~V-----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~ 46 (75)
T 4emk_B 8 FLNKVIGKKV-----LIRLSSGVDYKGILSCLDGYMNLALERTE 46 (75)
T ss_dssp HHHHTTTSEE-----EEECTTSCEEEEEEEEECTTCEEEEEEEE
T ss_pred HHHHhCCCeE-----EEEEcCCcEEEEEEEEEcCcceEEEccEE
Confidence 3444555566 7888888766 999999997777666653
No 239
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=29.25 E-value=66 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=27.1
Q ss_pred cccceEEccCCeeeeeeeEEecccCC---ceeEEeec
Q 029223 75 YFNAPIYLQNKTQIGKVDEIFGPINE---SYFSVKMM 108 (197)
Q Consensus 75 ~~na~V~~knkt~IGkV~EIFGpIn~---~Y~sVK~~ 108 (197)
.....|+..++++||+|+||+--... -|+.|+..
T Consensus 151 l~G~~Vya~DGekIG~V~Dv~vD~~sG~VrYlVVdtG 187 (259)
T 1eys_H 151 PRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEVEVA 187 (259)
T ss_dssp CTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEEEET
T ss_pred CcCCEEEeCCCCeeEEEEEEEEECCCCeEEEEEEEcC
Confidence 45779999999999999999974432 58888773
No 240
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=29.07 E-value=61 Score=24.62 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=32.1
Q ss_pred cCcccceEEccCCeeeeeeeE-Eecc-cCCceeEEeecCCccccccccCcEEEEcCCCCCc
Q 029223 73 IPYFNAPIYLQNKTQIGKVDE-IFGP-INESYFSVKMMEGIVATSYSLGDKFYIDPSKLLP 131 (197)
Q Consensus 73 VP~~na~V~~knkt~IGkV~E-IFGp-In~~Y~sVK~~d~v~a~s~~~GdklyIdp~klLP 131 (197)
.|...+.|..+=.. |+|++ +|-. ....+.+|..+|...+. ..++.+|...+. ||
T Consensus 63 pP~~G~~V~V~W~D--G~~y~a~f~g~~~~~~Y~V~feDgs~~~--~kR~~iyt~~E~-lP 118 (118)
T 2qqr_A 63 PPAEGEVVQVRWTD--GQVYGAKFVASHPIQMYQVEFEDGSQLV--VKRDDVYTLDEE-LP 118 (118)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEEEEEEEEEEETTSCEEE--ECGGGEEETTSC-CC
T ss_pred CCCCCCEEEEEcCC--CCEeeeEEeceeEEEEEEEEECCCCEEE--EcHHHeeccccC-Cc
Confidence 56666666543322 55533 3432 33356788888876543 356789988877 65
No 241
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=27.98 E-value=67 Score=21.75 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=26.3
Q ss_pred ceEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 63 DAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 63 dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
..+.++.+++| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 7 ~~L~~~~~k~V-----~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e 47 (76)
T 3s6n_G 7 PELKKFMDKKL-----SLKLNGGRHVQGILRGFDPFMNLVIDECVE 47 (76)
T ss_dssp -------CCEE-----EEEETTTEEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHHhCCCeE-----EEEECCCcEEEEEEEEECCcceEEEeceEE
Confidence 34555556666 8888888766 9999999988887777643
No 242
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=27.19 E-value=75 Score=21.92 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=29.9
Q ss_pred ceEEccCCeeeeeeeEEecccCCce-eEE-ee--cCCcccccc-ccCcEEEEc
Q 029223 78 APIYLQNKTQIGKVDEIFGPINESY-FSV-KM--MEGIVATSY-SLGDKFYID 125 (197)
Q Consensus 78 a~V~~knkt~IGkV~EIFGpIn~~Y-~sV-K~--~d~v~a~s~-~~GdklyId 125 (197)
+.|..+|+=.+|.-.||+.|--..+ ++| ++ ++....++. .+++.++|.
T Consensus 22 ~~ie~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~ 74 (89)
T 4he6_A 22 ATVQQRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFK 74 (89)
T ss_dssp EEEEESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEE
T ss_pred EEEEEcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEE
Confidence 4677788888898889999765332 233 22 233333333 567888885
No 243
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=25.63 E-value=35 Score=23.45 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=27.9
Q ss_pred eEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEee
Q 029223 64 AVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVKM 107 (197)
Q Consensus 64 lV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK~ 107 (197)
+|.++..++| .|.+++.+.+ |++..++-.+|..+..++.
T Consensus 15 ~L~~~~~~~V-----~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e 54 (81)
T 1i8f_A 15 TLQDSIGKQV-----LVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54 (81)
T ss_dssp HHHTTTTSEE-----EEEEGGGEEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHHCCCeE-----EEEEcCCcEEEEEEEEEcCCCeeEEccEEE
Confidence 3344444455 7888887766 9999999988887777654
No 244
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=24.99 E-value=16 Score=27.40 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=31.6
Q ss_pred EEccCCeeee--eeeEEecccC--CceeEEeecCCcccccccc--CcEEEEcCCCCCcCCccCCCC
Q 029223 80 IYLQNKTQIG--KVDEIFGPIN--ESYFSVKMMEGIVATSYSL--GDKFYIDPSKLLPLARFLPQP 139 (197)
Q Consensus 80 V~~knkt~IG--kV~EIFGpIn--~~Y~sVK~~d~v~a~s~~~--GdklyIdp~klLPLdrflPkp 139 (197)
+|++..++|+ .|.-|.|.-. ..|.++|.+-......+.. =|-+.|.|.. + ..++|+|
T Consensus 35 ~fL~~E~PI~~~~I~TIHG~k~q~vYYl~fKv~GRKveaEVi~sp~dYvli~P~D-i--PW~~~~p 97 (107)
T 2jys_A 35 AFLEDERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASPYDYILLNPSD-V--PWLMKKP 97 (107)
T ss_dssp GGTTTCCCSEEEEEECSSCEEEEEEEEEEEEESSCEEEEEEEEESSSSEEECTTT-C--HHHHSCC
T ss_pred HHhcccccccceEEEEecCceeceEEEEEEEEcCeEEEEEEecCcccEEEEcCcC-c--cccccCc
Confidence 5777778886 4566666333 3589998755333222211 2556666655 3 3444554
No 245
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=24.95 E-value=1.2e+02 Score=21.23 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=18.4
Q ss_pred ecCCccccccccCcEEEEcCCCCCcCCccCC
Q 029223 107 MMEGIVATSYSLGDKFYIDPSKLLPLARFLP 137 (197)
Q Consensus 107 ~~d~v~a~s~~~GdklyIdp~klLPLdrflP 137 (197)
+...+..+.+++++++-++.+. +-+=..||
T Consensus 47 v~~~Vd~~~LkpG~rVaLn~~s-~~Iv~vLp 76 (85)
T 3h43_A 47 VSHFVNPDDLAPGKRVCLNQQT-LTVVDVLP 76 (85)
T ss_dssp BCTTSCGGGCCTTCEEEECTTT-CCEEEECC
T ss_pred ecCccCHHHCCCCCEEEECCcc-cCHhhhhh
Confidence 3555566777888888777655 44433343
No 246
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.94 E-value=25 Score=26.57 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.8
Q ss_pred CCCCcceEEeeceeee-ccCceEeccccc
Q 029223 44 EGPPAEVVEVSSFLHA-CEGDAVTKLTNE 71 (197)
Q Consensus 44 ~gPPs~vl~lG~~sh~-ce~dlV~K~~~~ 71 (197)
+=|+..+|+|+++++. |..+-|.++|.+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~ 42 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSN 42 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHh
Confidence 3478899999999999 888777777654
No 247
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=24.93 E-value=1.3e+02 Score=23.05 Aligned_cols=27 Identities=4% Similarity=0.031 Sum_probs=21.0
Q ss_pred CCCCCCcceEEeeceeeeccCceEecc
Q 029223 42 RDEGPPAEVVEVSSFLHACEGDAVTKL 68 (197)
Q Consensus 42 ~~~gPPs~vl~lG~~sh~ce~dlV~K~ 68 (197)
..++-|.+|-+|+.+.+--.++.+..+
T Consensus 18 aS~s~p~kVR~L~QVisYd~~sa~L~l 44 (123)
T 3kf8_B 18 ASISNPERLRILAQVKDFIPHESTIVI 44 (123)
T ss_dssp CBTTBCEEEEEEEEEEEEEGGGTEEEE
T ss_pred ccccCCceEEEEEEEEEEcCCCcEEEE
Confidence 346679999999999888877755554
No 248
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=24.49 E-value=2.6e+02 Score=21.95 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCCcceEEeecee--eeccCceEecccccccCcc--cceEEccCC-eee-eeeeEEecccCCceeEEee--cCCcccccc
Q 029223 45 GPPAEVVEVSSFL--HACEGDAVTKLTNEKIPYF--NAPIYLQNK-TQI-GKVDEIFGPINESYFSVKM--MEGIVATSY 116 (197)
Q Consensus 45 gPPs~vl~lG~~s--h~ce~dlV~K~~~~~VP~~--na~V~~knk-t~I-GkV~EIFGpIn~~Y~sVK~--~d~v~a~s~ 116 (197)
+.|++.+.||.+. |-...++-++++.+..-.| ..+++++.. ..+ =+|.++-- .+. .+.+|. -+...+...
T Consensus 6 ~~~~~~v~vG~I~~~hGikGevkv~~~td~pe~~~~~~~~~l~~~~~~~~~~v~~~r~-~~~-~~ivkf~gi~dr~~Ae~ 83 (182)
T 2qgg_A 6 NVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQTVDVKRWKP-HGK-GLVVSLKGVSDRTGAES 83 (182)
T ss_dssp CCCSSEEEEEEEEEEETTTTEEEEEECSSSGGGGGGSSSEEEEETTEEEEECEEEEEE-ETT-EEEEEETTCCSHHHHHT
T ss_pred CCCCCEEEEEEEeCCcccCEEEEEEECCCCHHHhccCCEEEEecCCcEEEEEEEEEEE-cCC-EEEEEECCCCCHHHHHH
Confidence 4577889999986 4456677666544321111 223444321 111 13333321 122 233343 223333334
Q ss_pred ccCcEEEEcCCCCCcC
Q 029223 117 SLGDKFYIDPSKLLPL 132 (197)
Q Consensus 117 ~~GdklyIdp~klLPL 132 (197)
+.+..+||+.+.|-+|
T Consensus 84 L~G~~l~v~~~~lp~l 99 (182)
T 2qgg_A 84 LVASNIWIAKSQLPKA 99 (182)
T ss_dssp TTTCEEEEETTCCCCC
T ss_pred hCCCEEEEEHHHCCCC
Confidence 5689999998885455
No 249
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=24.04 E-value=11 Score=27.75 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=12.4
Q ss_pred CCcceEEeeceeeec
Q 029223 46 PPAEVVEVSSFLHAC 60 (197)
Q Consensus 46 PPs~vl~lG~~sh~c 60 (197)
||+.||.|-|+....
T Consensus 18 ~ps~vl~L~Nm~~~~ 32 (118)
T 3ue2_A 18 QESTVMVLRNMVDPK 32 (118)
T ss_dssp HSCCEEEEESCSCGG
T ss_pred CCCCEEEEECCCCHH
Confidence 699999999996553
No 250
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=21.63 E-value=64 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.0
Q ss_pred ccccCcccceEEccCCeee-eeeeEEec
Q 029223 70 NEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 70 ~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
.+++|. .||+.|+.++ |+|...+=
T Consensus 23 ~~~~~V---tv~L~NG~~l~G~I~~fD~ 47 (71)
T 2qtx_A 23 LNGKKV---KIFLRNGEVLDAEVTGVSN 47 (71)
T ss_dssp GTTCEE---EEEETTSCEEEEEEEEECS
T ss_pred HcCCcE---EEEEeCCeEEEEEEEEEcc
Confidence 345654 8999999988 99998665
No 251
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=21.59 E-value=52 Score=23.47 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=28.5
Q ss_pred ceEecccccccCcccceEEccCCeee-eeeeEEecccCCceeEEe
Q 029223 63 DAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFGPINESYFSVK 106 (197)
Q Consensus 63 dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFGpIn~~Y~sVK 106 (197)
+.|.++.+++| .|.+++...+ |++..++-.+|..+..++
T Consensus 13 ~~L~~~i~k~V-----~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~ 52 (96)
T 3bw1_A 13 DLLKLNLDERV-----YIKLRGARTLVGTLQAFDSHCNIVLSDAV 52 (96)
T ss_dssp HHHGGGTTSEE-----EEEEGGGCEEEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHCCCeE-----EEEECCCcEEEEEEEEECCCCcEEEcCEE
Confidence 35555666666 7888887665 999999998887766653
No 252
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=21.16 E-value=20 Score=31.06 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=0.0
Q ss_pred CCCCcCC-ccC
Q 029223 127 SKLLPLA-RFL 136 (197)
Q Consensus 127 ~klLPLd-rfl 136 (197)
.++|-|| +|+
T Consensus 204 K~~Leid~~F~ 214 (273)
T 3u5c_h 204 KEYLEFDATFV 214 (273)
T ss_dssp -----------
T ss_pred ceEEEecCEEc
Confidence 3456666 566
No 253
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=20.65 E-value=69 Score=24.49 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=31.7
Q ss_pred ccCcccceEEccCCeeeeeeeE-Eeccc-CCceeEEeecCCccccccccCcEEEEcCCCCCcC
Q 029223 72 KIPYFNAPIYLQNKTQIGKVDE-IFGPI-NESYFSVKMMEGIVATSYSLGDKFYIDPSKLLPL 132 (197)
Q Consensus 72 ~VP~~na~V~~knkt~IGkV~E-IFGpI-n~~Y~sVK~~d~v~a~s~~~GdklyIdp~klLPL 132 (197)
-.|...+.|..+-.. |+|++ +|-.. ...+.+|..+|...+. ...+.+|...+. ||.
T Consensus 63 GpP~~G~~V~V~W~D--G~~y~a~f~g~~~~~~YtV~FeDgs~~~--~kR~~iyt~~E~-lPk 120 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPD--GKLYGAKYFGSNIAHMYQVEFEDGSQIA--MKREDIYTLDEE-LPK 120 (123)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEEEEEEEEEEEEEECTTSCEEE--EEGGGCCCSSSC-CCS
T ss_pred CCCCCCCEEEEEcCC--CCEEeEEEeeeeeEEEEEEEECCCCeEE--ecHHHccccccc-ccc
Confidence 356667777655443 55533 33322 2346688888875442 345667777666 664
No 254
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=20.43 E-value=29 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=23.3
Q ss_pred ccCceEecccccccCcccceEEccCCeee-eeeeEEec
Q 029223 60 CEGDAVTKLTNEKIPYFNAPIYLQNKTQI-GKVDEIFG 96 (197)
Q Consensus 60 ce~dlV~K~~~~~VP~~na~V~~knkt~I-GkV~EIFG 96 (197)
.++.+|-.+-.+++|. .|++.|+.++ |+|...+-
T Consensus 7 lQd~fLn~lrk~k~~V---tI~L~nG~~l~G~I~~fD~ 41 (77)
T 1kq1_A 7 IQDKALENFKANQTEV---TVFFLNGFQMKGVIEEYDK 41 (77)
T ss_dssp HHHHHHHHHHHHTCEE---EEEETTSCEEEEEEEEECS
T ss_pred cHHHHHHHHHhcCCeE---EEEEeCCCEEEEEEEEECC
Confidence 3444444444456655 8999999888 99988655
No 255
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=20.24 E-value=1.8e+02 Score=21.86 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=37.5
Q ss_pred CCCcceEEee--ceeeeccCceEecccccccCcccceEEccCCeeeeeeeEEec---ccCC----ceeEEeecCCccccc
Q 029223 45 GPPAEVVEVS--SFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFG---PINE----SYFSVKMMEGIVATS 115 (197)
Q Consensus 45 gPPs~vl~lG--~~sh~ce~dlV~K~~~~~VP~~na~V~~knkt~IGkV~EIFG---pIn~----~Y~sVK~~d~v~a~s 115 (197)
-+|+++..|= ++.+ ..-++-+...- +-+.+.+| +.+ +.+++|..|-- +++. .-+.|++++.. . .
T Consensus 32 ~~P~k~~ilp~~~~vF--gpvivGrVe~G-~LK~G~~V-Pg~-~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~-~-~ 104 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG--KDVIIGTVESG-MIGVGFKV-KGP-SGIGGIVRIERNREKVEFAIAGDRIGISIEGKI-G-K 104 (116)
T ss_dssp SCSEEEEEEEEEEETT--EEEEEEEEEEE-EEETTCEE-ECS-SCEEEEEEEEETTEEESEEETTCEEEEEEESCC-C-C
T ss_pred cCcEEEEEEecCCeEE--CCeeEEEEeEE-EEcCCCCc-CCC-ceEEEEEEEEECCcCcCCcCCCCEEEEEEECCc-c-c
Confidence 4788888888 4444 22233344322 22445566 222 15677766554 1111 12333333322 2 5
Q ss_pred cccCcEEEEc
Q 029223 116 YSLGDKFYID 125 (197)
Q Consensus 116 ~~~GdklyId 125 (197)
++.+|.||++
T Consensus 105 I~~GdVLyv~ 114 (116)
T 1xe1_A 105 VKKGDVLEIY 114 (116)
T ss_dssp CCTTCEEEEE
T ss_pred cCCCcEEEEe
Confidence 7788888886
Done!