BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029225
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 28 RIVNVTSFTHRNVFNAQVNNETITGKFFLRSKCYPCARIYEYSKLCLLIFSYELHRNLGL 87
R+V V+S H + ++N E + RS+ Y Y SKL L+F+ EL R L
Sbjct: 133 RVVTVSSMAH---WPGRINLEDLN----WRSRRYSPWLAYSQSKLANLLFTSELQRRLTA 185
Query: 88 DKSRHVSVIAADPGVVKTNIM 108
S + +AA PG TN+
Sbjct: 186 AGS-PLRALAAHPGYSHTNLQ 205
>pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AFN|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a
Resolution
pdb|4AG3|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|B Chain B, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|C Chain C, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
pdb|4AG3|D Chain D, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein)
Reductase (fabg) From Pseudomonas Aeruginosa In Complex
With Nadph At 1.8a Resolution
Length = 269
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 67 YEYSKLCLLIFSYELHRNLGLDKSRHVSVIAADPGVVKTNIMREVP 112
Y +K L F+ L R +G SR ++V A PG + T++ RE+P
Sbjct: 176 YAAAKAGLEGFTRALAREVG---SRAITVNAVAPGFIDTDMTRELP 218
>pdb|1IDQ|A Chain A, Crystal Structure Of Native Vanadium-Containing
Chloroperoxidase From Curvularia Inaequalis
pdb|1VNC|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis
pdb|1VNI|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Recombinant Holo-Chloroperoxidase
pdb|1VNS|A Chain A, Recombinant Apo-chloroperoxidase From Curvularia
Inaequalis
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form Of The Vanadium-
Containing Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|1VNG|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H404a
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|3BB0|A Chain A, Crystal Structure Of A Trapped Phosphate-Intermediate In
Vanadium Apochloroperoxidase Catalyzing A
Dephosphorylation Reaction
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|1VNE|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant D292a
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|1VNF|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant R360a
Length = 609
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G++ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVHWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 76 IFSYELHRNLGLDKSRHVS------VIAADPGVVKT 105
+FS + H N+ L + RHV+ V+ AD GVV T
Sbjct: 265 VFSQDPHENVVLGEGRHVALDTFGCVVYADRGVVAT 300
>pdb|1VNH|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H496a
Length = 609
Score = 26.9 bits (58), Expect = 7.2, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 96 IAADPGVVKTNIMREVPSFLSLMAFTVLKLLGLLQSPEKGINSVLDAA-----LAPPETS 150
I PG+V+T I+R S LM + + L G+ DAA L P T
Sbjct: 461 IEDQPGIVRTRIVRHFDSAWELMFENAISRIFL------GVAWRFDAAAARDILIPTTTK 514
Query: 151 GVYFFGGKGRTV 162
VY G TV
Sbjct: 515 DVYAVDNNGATV 526
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,078,560
Number of Sequences: 62578
Number of extensions: 186090
Number of successful extensions: 409
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 16
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)