BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029226
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a OS=Caenorhabditis elegans GN=rpl-7A PE=1
SV=3
Length = 265
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 102 VPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAV 161
V + + Q++L+A D +P ++ HLP L NVP +K G LG +V+ KT AV
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIK----GKASLGTVVRRKTTAAV 203
Query: 162 GI 163
+
Sbjct: 204 AL 205
>sp|O26355|RL7A_METTH 50S ribosomal protein L7Ae OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl7ae PE=3 SV=2
Length = 123
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 27/87 (31%)
Query: 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKH 124
+ S G NEVT+ +ER G++ Q++L+A D P ++ H
Sbjct: 31 KVSKGTNEVTKAVER-------GVA------------------QLVLIAEDVEPAEIVAH 65
Query: 125 LPGLALSRNVPVIFV--KDKKGGSLRL 149
LP LA + +P I++ KD+ G + L
Sbjct: 66 LPLLAEEKEIPYIYIPTKDELGAAAGL 92
>sp|Q6CM69|SNU13_KLULA 13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SNU13 PE=3 SV=1
Length = 126
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AADC P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADCEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV +
Sbjct: 71 CEDKNVPYVFVPSRTA 86
>sp|Q54ZD1|RL7A_DICDI 60S ribosomal protein L7a OS=Dictyostelium discoideum GN=rpl7a PE=1
SV=1
Length = 285
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 46/175 (26%)
Query: 5 KRASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQR--------------EIVSARS 50
+R R L+ + PP ++ Q + ++ + V L KL+ + +I AR+
Sbjct: 79 QRQRRVLLKRLKVPP-TINQFTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARA 137
Query: 51 L--HGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQ 108
G + P+ Q G++ VT+++E+ + +
Sbjct: 138 ATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKK-------------------------KAK 172
Query: 109 VILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
++++A D P L+ +LP L +VP VK K RLGELV ++ A V +
Sbjct: 173 LVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKS----RLGELVHMRNASCVAL 223
>sp|P0DJ14|RL7A_TETTH 60S ribosomal protein L7a OS=Tetrahymena thermophila GN=RPL7A PE=1
SV=1
Length = 255
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
Q +++++A D P L+ LP L +VP FVK G LG+LV KTA AV +
Sbjct: 140 QAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVK----GKAALGKLVNKKTATAVAL 193
>sp|Q757T2|SNU13_ASHGO 13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SNU13 PE=3 SV=1
Length = 127
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 25/71 (35%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AADC P ++ HLP L
Sbjct: 37 GANEATKTLNR-------GIS------------------EFIIMAADCEPIEILLHLPLL 71
Query: 129 ALSRNVPVIFV 139
+NVP +FV
Sbjct: 72 CEDKNVPYVFV 82
>sp|Q6FQV5|SNU13_CANGA 13 kDa ribonucleoprotein-associated protein OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SNU13 PE=3 SV=1
Length = 126
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 25/71 (35%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AADC P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADCEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFV 139
+NVP +FV
Sbjct: 71 CEDKNVPYVFV 81
>sp|P55770|NH2L1_RAT NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4
Length = 128
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P +I HLP L
Sbjct: 38 GANEATKTLNR-------GIS------------------EFIVMAADAEPLEIILHLPLL 72
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV+ K+
Sbjct: 73 CEDKNVPYVFVRSKQA 88
>sp|Q9D0T1|NH2L1_MOUSE NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4
Length = 128
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P +I HLP L
Sbjct: 38 GANEATKTLNR-------GIS------------------EFIVMAADAEPLEIILHLPLL 72
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV+ K+
Sbjct: 73 CEDKNVPYVFVRSKQA 88
>sp|Q4R5C6|NH2L1_MACFA NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1
Length = 128
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P +I HLP L
Sbjct: 38 GANEATKTLNR-------GIS------------------EFIVMAADAEPLEIILHLPLL 72
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV+ K+
Sbjct: 73 CEDKNVPYVFVRSKQA 88
>sp|P55769|NH2L1_HUMAN NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3
Length = 128
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P +I HLP L
Sbjct: 38 GANEATKTLNR-------GIS------------------EFIVMAADAEPLEIILHLPLL 72
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV+ K+
Sbjct: 73 CEDKNVPYVFVRSKQA 88
>sp|Q3B8S0|NH2L1_BOVIN NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3
Length = 128
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P +I HLP L
Sbjct: 38 GANEATKTLNR-------GIS------------------EFIVMAADAEPLEIILHLPLL 72
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV+ K+
Sbjct: 73 CEDKNVPYVFVRSKQA 88
>sp|P39990|SNU13_YEAST 13 kDa ribonucleoprotein-associated protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNU13 PE=1
SV=1
Length = 126
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 25/71 (35%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AADC P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADCEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFV 139
+NVP +FV
Sbjct: 71 CEDKNVPYVFV 81
>sp|B9LPY2|RL7A_HALLT 50S ribosomal protein L7Ae OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl7ae PE=3
SV=1
Length = 120
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 25/72 (34%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ +ER GN+ ++++A D SP ++ HLP L
Sbjct: 33 GTNETTKAVER------------------GNA-------DLVIVAEDVSPEEIVMHLPEL 67
Query: 129 ALSRNVPVIFVK 140
A + +PV+FV
Sbjct: 68 AEEKGIPVVFVD 79
>sp|Q6KZI7|RL7A_PICTO 50S ribosomal protein L7Ae OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rpl7ae
PE=3 SV=1
Length = 127
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 36/114 (31%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NEV + +ER G SK+ +++A D SP ++ +LP L
Sbjct: 33 GTNEVVKSIER------------------GESKL-------VVIAEDVSPAEVVYYLPTL 67
Query: 129 ALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI-------KAKGNIINQLMD 175
R VP ++VK K L++G + +A +V I A +I++Q+ D
Sbjct: 68 CEERKVPYVYVKKKSDLGLKVG----IASAASVSIVDYGKNDDAYKSIVSQIND 117
>sp|A4YIL9|RL7A_METS5 50S ribosomal protein L7Ae OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl7ae PE=3 SV=1
Length = 125
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVG 162
Q +++L+A D P ++ HLP L + +P I+V KKG +GE L+ A
Sbjct: 47 QAKLVLIAEDVQPEEIVAHLPPLCEEKKIPYIYVPTKKG----IGEACGLQVGAAAA 99
>sp|Q5XH16|NH2L1_XENLA NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1
Length = 128
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144
+ I++AAD P +I HLP L +NVP +FV+ K+
Sbjct: 52 EFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA 88
>sp|Q6P8E9|NH2L1_XENTR NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1
Length = 128
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144
+ I++AAD P +I HLP L +NVP +FV+ K+
Sbjct: 52 EFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA 88
>sp|P46223|RL7A_DROME 60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2
SV=2
Length = 271
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 45/183 (24%)
Query: 17 KPPNSVPQESECYEGESLVRLLKLIQR--------------EIVSARSLHGDSLPEKLWF 62
K P + Q S+ + + V+L KL+++ +I A++ D P+K
Sbjct: 80 KVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKK-- 137
Query: 63 KQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLI 122
S G N VT+++E+ + Q++++A D P L+
Sbjct: 138 PSYVSAGTNTVTKLIEQK-------------------------KAQLVVIAHDVDPLELV 172
Query: 123 KHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILHGDE 182
LP L VP VK G RLG LV+ KT + + N K+L +
Sbjct: 173 LFLPALCRKMGVPYCIVK----GKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVK 228
Query: 183 VDL 185
+
Sbjct: 229 TNF 231
>sp|O76732|RL7A_ANOGA 60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2
Length = 271
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKG 167
Q++++A D P L+ +LP L VP +K G RLG LV KT V
Sbjct: 159 QLVIIAHDVDPIELVVYLPALCRKMGVPYCIIK----GKARLGTLVYRKTCTCVA----- 209
Query: 168 NIINQLMDKILHGDEVDLLKLSET 191
+ ++ + D+ +L KL ET
Sbjct: 210 ------LTQVENADKPNLAKLVET 227
>sp|Q9HQH8|RL7A_HALSA 50S ribosomal protein L7Ae OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl7ae PE=3 SV=1
Length = 120
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 25/72 (34%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ +ER GN+ ++ +A D SP ++ HLP L
Sbjct: 33 GTNETTKAIER------------------GNA-------DIVFVAEDVSPEEIVMHLPEL 67
Query: 129 ALSRNVPVIFVK 140
A + + V+FV+
Sbjct: 68 AAEKGIEVVFVE 79
>sp|B0R4Z9|RL7A_HALS3 50S ribosomal protein L7Ae OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=rpl7ae PE=3 SV=1
Length = 120
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 25/72 (34%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ +ER GN+ ++ +A D SP ++ HLP L
Sbjct: 33 GTNETTKAIER------------------GNA-------DIVFVAEDVSPEEIVMHLPEL 67
Query: 129 ALSRNVPVIFVK 140
A + + V+FV+
Sbjct: 68 AAEKGIEVVFVE 79
>sp|Q3IPM9|RL7A_NATPD 50S ribosomal protein L7Ae OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl7ae PE=3 SV=1
Length = 120
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 25/71 (35%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ +ER GN+ +++ +A D SP ++ HLP +
Sbjct: 33 GTNETTKAVER------------------GNA-------ELVFVAEDVSPEEVVMHLPEI 67
Query: 129 ALSRNVPVIFV 139
A + +P +FV
Sbjct: 68 ATEKEIPYVFV 78
>sp|Q0W8W9|RL7A_UNCMA 50S ribosomal protein L7Ae OS=Uncultured methanogenic archaeon RC-I
GN=rpl7ae PE=3 SV=1
Length = 123
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 25/72 (34%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NEVT+ +ER G++ Q++++ D +P ++ H+P L
Sbjct: 35 GTNEVTKAIER-------GVA------------------QLVIVGEDVTPEEIVAHIPAL 69
Query: 129 ALSRNVPVIFVK 140
+ + +P +FVK
Sbjct: 70 SDEKKIPYVFVK 81
>sp|Q6C0I0|SNU13_YARLI 13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SNU13 PE=3 SV=1
Length = 126
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADAEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKILH 179
+NVP IFV K + LG + + + N +QL D+I+
Sbjct: 71 CEDKNVPYIFVPSK----VALGRACGVSRPV-ISASVTSNDASQLKDQIIQ 116
>sp|O29494|RL7A_ARCFU 50S ribosomal protein L7Ae OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl7ae PE=1 SV=1
Length = 119
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 25/88 (28%)
Query: 55 SLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAA 114
SL EK+ + G NE T+ +ER G++ +++ +A
Sbjct: 17 SLLEKVRESGKVKKGTNETTKAVER-------GLA------------------KLVYIAE 51
Query: 115 DCSPRWLIKHLPGLALSRNVPVIFVKDK 142
D P ++ HLP L +NVP I+VK K
Sbjct: 52 DVDPPEIVAHLPLLCEEKNVPYIYVKSK 79
>sp|Q6BLQ3|SNU13_DEBHA 13 kDa ribonucleoprotein-associated protein OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SNU13 PE=3 SV=1
Length = 126
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADTEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV K
Sbjct: 71 CEDKNVPYVFVPSKTA 86
>sp|Q466D1|RL7A_METBF 50S ribosomal protein L7Ae OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl7ae PE=3 SV=1
Length = 120
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ +ER GN+K+ +L+A D P +I H+ L
Sbjct: 33 GTNEATKAIER------------------GNAKL-------VLIAEDIEPAEIIAHIAPL 67
Query: 129 ALSRNVPVIFVKDKK--GGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKI 177
+ + P IF+K++K G + LG V T V G ++ + K+
Sbjct: 68 SEEKKAPYIFIKNQKELGAASGLG--VSCATVAIVDAGKAGEMVQDIAQKL 116
>sp|Q9U3Z7|NH2L1_DROME NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=2
SV=1
Length = 127
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 109 VILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144
+++LA D P ++ HLP L +NVP +FV+ K+
Sbjct: 52 IVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQA 87
>sp|Q5ANL6|SNU13_CANAL 13 kDa ribonucleoprotein-associated protein OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SNU13 PE=3 SV=1
Length = 126
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P ++ HLP L
Sbjct: 36 GANEATKTLNR-------GIS------------------EFIIMAADTEPIEILLHLPLL 70
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV K
Sbjct: 71 CEDKNVPYVFVPSKAA 86
>sp|Q90YW2|RL7A_ICTPU 60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3
Length = 266
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 99 NSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTA 158
S V S + Q++++A D P L+ LP L VP VK G RLG LV KT
Sbjct: 144 TSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVK----GKARLGRLVHRKTC 199
Query: 159 IAV 161
+V
Sbjct: 200 TSV 202
>sp|B6YWH9|RL7A_THEON 50S ribosomal protein L7Ae OS=Thermococcus onnurineus (strain NA1)
GN=rpl7ae PE=3 SV=1
Length = 123
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
Q +++++A D P ++ HLP L + +P I+V KK
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKK 84
>sp|C5A1V9|RL7A_THEGJ 50S ribosomal protein L7Ae OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl7ae PE=3 SV=1
Length = 123
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
Q +++++A D P ++ HLP L + +P I+V KK
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKK 84
>sp|O74690|SNU13_SCHPO 13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=snu13 PE=3 SV=1
Length = 125
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 25/76 (32%)
Query: 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGL 128
G NE T+ L R GIS + I++AAD P ++ HLP L
Sbjct: 35 GANEATKTLNR-------GIS------------------EFIVMAADTEPIEILLHLPLL 69
Query: 129 ALSRNVPVIFVKDKKG 144
+NVP +FV K
Sbjct: 70 CEDKNVPYVFVPSKAA 85
>sp|P62009|RL7A_PYRHO 50S ribosomal protein L7Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl7ae PE=1 SV=1
Length = 123
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
Q +++++A D P ++ HLP L + +P I+V KK
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKK 84
>sp|Q8U160|RL7A_PYRFU 50S ribosomal protein L7Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl7ae PE=1 SV=2
Length = 123
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
Q +++++A D P ++ HLP L + +P I+V KK
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKK 84
>sp|P62008|RL7A_PYRAB 50S ribosomal protein L7Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl7ae PE=1 SV=1
Length = 123
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 106 QLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
Q +++++A D P ++ HLP L + +P I+V KK
Sbjct: 47 QAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKK 84
>sp|Q4P0K3|SNU13_USTMA 13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SNU13 PE=3 SV=1
Length = 126
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144
+ I++AAD P ++ HLP L +NVP +FV K
Sbjct: 50 EFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTA 86
>sp|O57592|RL7A_TAKRU 60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3
Length = 266
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 59 KLWFKQRFSIGVNEVTRVLERMAPRA-NMGISPQQ--PHILCGNSKVPSV----QLQVIL 111
KL K R + R+L R +A G +P + P + G + + S+ + Q+++
Sbjct: 97 KLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTKRPPVLRAGVNTITSLVENKKAQLVV 156
Query: 112 LAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
+A D P L+ LP L VP VK G RLG LV KT +V
Sbjct: 157 IAHDVDPIELVIFLPALCRKMGVPYCIVK----GKARLGRLVHRKTCTSVAF 204
>sp|P12743|RL7A_HALMA 50S ribosomal protein L7Ae OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl7ae PE=1
SV=4
Length = 120
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVK 140
+++ +A D P ++ H+P LA + VP IFV+
Sbjct: 47 ELVFVAEDVQPEEIVMHIPELADEKGVPFIFVE 79
>sp|Q80UU2|RPP38_MOUSE Ribonuclease P protein subunit p38 OS=Mus musculus GN=Rpp38 PE=2
SV=1
Length = 280
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 28/101 (27%)
Query: 62 FKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWL 121
+++ IGVNEVTR LER +L ++L+ P +
Sbjct: 104 VRKQLVIGVNEVTRALERN-------------------------ELLLVLVCKSVKPAII 138
Query: 122 IKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVG 162
HL L+LSR VP V S R+ ++ LK +A+G
Sbjct: 139 TSHLIQLSLSRTVPACQVPQ---LSERIAPVIGLKCVLALG 176
>sp|Q54ST0|NH2L1_DICDI NHP2-like protein 1 homolog OS=Dictyostelium discoideum
GN=DDB_G0282243 PE=3 SV=1
Length = 129
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKG 167
+ ++LAAD P ++ H+P L +N+P +FV K R ++ + A AV + K
Sbjct: 52 EFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELG-RACDVSRPVVACAVTVDDKS 110
Query: 168 NIINQLMD 175
+ +Q+ +
Sbjct: 111 QLKSQITN 118
>sp|Q9HJ56|RL7A_THEAC 50S ribosomal protein L7Ae OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rpl7ae PE=3 SV=1
Length = 121
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 44 EIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVP 103
E VS ++L L E + + G NEV + +ER G SK+
Sbjct: 12 EDVSQKALD---LVESSYRTGKVKKGTNEVIKSIER------------------GESKL- 49
Query: 104 SVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
+++A D +P ++ +LP L + VP ++VK K LG V + +A +V I
Sbjct: 50 ------VVIAEDVNPPEVVYYLPSLCEDKKVPYVYVKKKAD----LGSKVGIASAASVSI 99
>sp|Q97BK8|RL7A_THEVO 50S ribosomal protein L7Ae OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rpl7ae PE=3 SV=1
Length = 121
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 44 EIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVP 103
E VS ++L L E + + G NEV + +ER G SK+
Sbjct: 12 EDVSQKALD---LVESAFRSGKIKKGTNEVIKSIER------------------GESKL- 49
Query: 104 SVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
+++A D +P ++ +LP L + VP ++VK K LG V + +A +V I
Sbjct: 50 ------VVIAEDVNPPEVVYYLPSLCEDKKVPYVYVKKKAD----LGSKVGIASAASVSI 99
>sp|A3MTA9|RL7A_PYRCJ 50S ribosomal protein L7Ae OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl7ae PE=3 SV=1
Length = 149
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 46 VSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCG-NSKVPS 104
+ ++ + + LP K ++ RF + + + LE ++ I+ Q I G N +
Sbjct: 5 IDPKTFYANPLPGKPFY-VRFEVPSDVAEKALEILS------IARQTGKIKKGTNETTKA 57
Query: 105 VQ---LQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143
V+ +++L+A D P ++ HLP L + VP ++V K+
Sbjct: 58 VERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKE 99
>sp|P12970|RL7A_MOUSE 60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2
Length = 266
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 102 VPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAV 161
V + + Q++++A D P L+ LP L VP +K G RLG LV KT V
Sbjct: 147 VENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIK----GKARLGHLVHRKTCTTV 202
Query: 162 GI 163
Sbjct: 203 AF 204
>sp|P62425|RL7A_RAT 60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2
Length = 266
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 8 SRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFS 67
R +++ K P ++ Q ++ + ++ +LLKL A ++ EK KQR
Sbjct: 66 QRAILYKRLKVPPAINQFTQALDRQTATQLLKL-------AHKYRPETKQEK---KQRL- 114
Query: 68 IGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSV----QLQVILLAADCSPRWLIK 123
+ R ++ A + ++ + + P + G + V ++ + Q++++A D P L+
Sbjct: 115 -----LARAEKKAAGKGDVP-TKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVV 168
Query: 124 HLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
LP L VP +K G RLG LV KT V
Sbjct: 169 FLPALCRKMGVPYCIIK----GKARLGRLVHRKTCTTVAF 204
>sp|Q4R5C2|RL7A_MACFA 60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1
Length = 266
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 8 SRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFS 67
R +++ K P ++ Q ++ + ++ +LLKL A ++ EK KQR
Sbjct: 66 QRAILYKRLKVPPAINQFTQALDRQTATQLLKL-------AHKYRPETKQEK---KQRL- 114
Query: 68 IGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSV----QLQVILLAADCSPRWLIK 123
+ R ++ A + ++ + + P + G + V ++ + Q++++A D P L+
Sbjct: 115 -----LARAEKKAAGKGDVP-TKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVV 168
Query: 124 HLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
LP L VP +K G RLG LV KT V
Sbjct: 169 FLPALCRKMGVPYCIIK----GKARLGRLVHRKTCTTVAF 204
>sp|P62424|RL7A_HUMAN 60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2
Length = 266
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 8 SRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFS 67
R +++ K P ++ Q ++ + ++ +LLKL A ++ EK KQR
Sbjct: 66 QRAILYKRLKVPPAINQFTQALDRQTATQLLKL-------AHKYRPETKQEK---KQRL- 114
Query: 68 IGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSV----QLQVILLAADCSPRWLIK 123
+ R ++ A + ++ + + P + G + V ++ + Q++++A D P L+
Sbjct: 115 -----LARAEKKAAGKGDVP-TKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVV 168
Query: 124 HLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGI 163
LP L VP +K G RLG LV KT V
Sbjct: 169 FLPALCRKMGVPYCIIK----GKARLGRLVHRKTCTTVAF 204
>sp|Q9LZH9|RL7A2_ARATH 60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=1
SV=1
Length = 256
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKG 167
Q++++A D P L+ LP L VP VK G RLG +V KTA A+ +
Sbjct: 143 QLVVIAHDVDPIELVVWLPALCRKMEVPYCIVK----GKSRLGAVVHQKTAAALCLTTVK 198
Query: 168 NIINQLMDKILHGDEVDL 185
N KIL + +
Sbjct: 199 NEDKLEFSKILEAIKANF 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,781,463
Number of Sequences: 539616
Number of extensions: 2806602
Number of successful extensions: 7142
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 7089
Number of HSP's gapped (non-prelim): 88
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)