Query 029226
Match_columns 197
No_of_seqs 169 out of 694
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_F RPL7A, 60S ribosomal pr 99.9 3.3E-25 1.1E-29 193.1 10.2 140 7-177 55-211 (255)
2 3iz5_H 60S ribosomal protein L 99.9 5.1E-26 1.8E-30 198.2 3.0 141 7-178 58-215 (258)
3 2zkr_f 60S ribosomal protein L 99.9 3.6E-23 1.2E-27 181.3 7.4 141 7-178 65-223 (266)
4 3izc_H 60S ribosomal protein R 99.9 3.1E-23 1.1E-27 180.9 3.4 141 7-178 60-219 (256)
5 2ale_A SNU13, NHP2/L7AE family 99.8 3.7E-20 1.3E-24 147.0 10.5 113 21-178 4-118 (134)
6 3jyw_G 60S ribosomal protein L 99.8 4.5E-20 1.5E-24 143.5 5.7 85 64-177 24-112 (113)
7 2jnb_A NHP2-like protein 1; sp 99.8 2.1E-19 7.1E-24 144.7 9.4 115 19-178 20-136 (144)
8 3o85_A Ribosomal protein L7AE; 99.8 3.4E-19 1.2E-23 139.1 10.0 110 22-177 4-114 (122)
9 1vq8_F 50S ribosomal protein L 99.8 8.2E-19 2.8E-23 135.6 9.8 104 31-176 7-111 (120)
10 2lbw_A H/ACA ribonucleoprotein 99.8 1.2E-18 4E-23 135.4 10.7 90 36-166 3-93 (121)
11 2fc3_A 50S ribosomal protein L 99.8 1.7E-18 5.8E-23 134.7 9.7 104 31-176 6-110 (124)
12 1rlg_A 50S ribosomal protein L 99.8 8.6E-19 2.9E-23 135.3 7.3 96 32-168 6-102 (119)
13 2aif_A Ribosomal protein L7A; 99.8 5.1E-18 1.7E-22 134.3 11.4 113 22-179 14-128 (135)
14 1xbi_A 50S ribosomal protein L 99.8 1.4E-18 4.9E-23 134.7 8.1 105 28-176 7-114 (120)
15 2xzm_U Ribosomal protein L7AE 99.7 6.9E-18 2.4E-22 132.7 8.1 93 36-169 7-111 (126)
16 3v7e_A Ribosome-associated pro 99.7 2.3E-17 7.7E-22 120.4 6.5 70 64-163 10-80 (82)
17 2kg4_A Growth arrest and DNA-d 99.7 4.9E-17 1.7E-21 134.1 8.9 96 31-167 13-131 (165)
18 3u5c_M 40S ribosomal protein S 99.7 6.1E-17 2.1E-21 130.7 6.2 101 37-178 24-140 (143)
19 3on1_A BH2414 protein; structu 99.6 3.1E-15 1.1E-19 112.2 8.9 71 65-165 18-88 (101)
20 3v7q_A Probable ribosomal prot 99.6 3.2E-15 1.1E-19 112.4 8.5 81 65-177 19-99 (101)
21 3cpq_A 50S ribosomal protein L 99.6 3.3E-15 1.1E-19 114.0 7.9 73 65-167 21-95 (110)
22 3iz5_f 60S ribosomal protein L 99.6 5.5E-15 1.9E-19 114.1 8.6 73 65-167 26-100 (112)
23 4a18_G RPL30; ribosome, eukary 99.6 3.5E-15 1.2E-19 112.8 6.4 74 65-168 22-97 (104)
24 3u5e_c L32, RP73, YL38, 60S ri 99.5 5.6E-15 1.9E-19 112.0 6.5 91 36-168 5-97 (105)
25 1w41_A 50S ribosomal protein L 99.5 1.2E-14 4.2E-19 108.8 8.3 73 65-167 16-90 (101)
26 3j21_Z 50S ribosomal protein L 99.5 3.6E-14 1.2E-18 106.0 10.2 74 65-168 15-90 (99)
27 3vi6_A 60S ribosomal protein L 99.2 5.3E-12 1.8E-16 98.9 4.8 84 65-178 27-114 (125)
28 3cg6_A Growth arrest and DNA-d 98.9 5.1E-09 1.8E-13 84.9 10.1 93 37-169 9-115 (146)
29 3ffm_A Growth arrest and DNA-d 98.8 2.1E-08 7.2E-13 82.8 9.7 97 33-168 26-135 (167)
30 3ir9_A Peptide chain release f 91.9 0.6 2E-05 37.5 7.7 30 120-153 120-149 (166)
31 1x52_A Pelota homolog, CGI-17; 88.8 1.8 6.1E-05 33.2 7.7 59 65-153 38-103 (124)
32 3agk_A Peptide chain release f 81.9 9.3 0.00032 33.6 9.9 52 64-143 298-349 (373)
33 2qi2_A Pelota, cell division p 79.5 2.6 8.7E-05 37.4 5.4 60 64-153 264-324 (347)
34 3j15_A Protein pelota; ribosom 79.3 4.6 0.00016 35.8 7.0 60 65-149 280-342 (357)
35 3nk6_A 23S rRNA methyltransfer 77.7 8.5 0.00029 32.9 8.0 78 65-174 35-115 (277)
36 2vgn_A DOM34; translation term 73.0 4.9 0.00017 36.0 5.4 61 64-153 296-362 (386)
37 3oby_A Protein pelota homolog; 71.0 7.2 0.00025 34.7 6.1 55 64-143 264-322 (352)
38 3obw_A Protein pelota homolog; 68.4 17 0.00058 32.4 7.9 55 64-143 284-343 (364)
39 3e20_C Eukaryotic peptide chai 67.4 41 0.0014 30.6 10.4 30 120-153 380-409 (441)
40 1gz0_A Hypothetical tRNA/RRNA 66.9 9.4 0.00032 32.0 5.6 63 65-157 13-76 (253)
41 3nkl_A UDP-D-quinovosamine 4-d 62.6 12 0.0004 27.1 4.8 52 67-143 51-102 (141)
42 1ipa_A RRMH, RNA 2'-O-ribose m 57.6 12 0.00042 31.8 4.7 63 65-157 29-92 (274)
43 1dt9_A ERF1, protein (eukaryot 54.1 77 0.0026 28.4 9.6 28 120-151 373-400 (437)
44 3agj_B Protein pelota homolog; 50.8 63 0.0022 28.3 8.4 60 65-153 272-337 (358)
45 3mca_B Protein DOM34, elongati 47.1 31 0.001 30.9 5.8 59 65-153 291-356 (390)
46 2ioj_A Hypothetical protein AF 42.4 27 0.00093 26.0 4.0 33 107-142 75-107 (139)
47 1yvw_A PRA-PH, phosphoribosyl- 36.6 8.3 0.00028 29.7 0.3 74 37-139 4-84 (115)
48 2a7w_A PRA-PH, phosphoribosyl- 33.9 12 0.00043 28.7 0.9 73 38-139 6-85 (116)
49 1y6x_A Phosphoribosyl-ATP pyro 33.8 3.9 0.00013 30.4 -1.9 71 37-136 9-86 (93)
50 1yxb_A PRA-PH, phosphoribosyl- 28.4 10 0.00035 28.4 -0.4 70 38-136 6-83 (98)
51 1x7o_A Avirb, rRNA methyltrans 25.5 1.6E+02 0.0056 24.8 6.6 60 65-156 41-100 (287)
52 2nuw_A 2-keto-3-deoxygluconate 25.4 82 0.0028 26.5 4.7 56 116-174 106-163 (288)
53 3hp4_A GDSL-esterase; psychrot 24.9 2E+02 0.0067 20.7 7.6 90 22-140 39-144 (185)
54 3grc_A Sensor protein, kinase; 24.0 1.7E+02 0.0059 19.8 6.4 53 66-143 35-90 (140)
55 1b93_A Protein (methylglyoxal 23.9 1.5E+02 0.0052 23.3 5.7 45 69-138 70-118 (152)
56 2dzq_A General transcription f 23.7 66 0.0022 24.2 3.3 29 54-82 47-75 (99)
57 1kyq_A Met8P, siroheme biosynt 23.4 92 0.0031 26.5 4.6 35 107-143 107-144 (274)
58 2lqo_A Putative glutaredoxin R 22.2 2E+02 0.0067 20.1 5.5 36 107-143 29-65 (92)
59 1uf3_A Hypothetical protein TT 20.6 1.6E+02 0.0056 21.9 5.1 37 107-144 33-74 (228)
60 3dfz_A SIRC, precorrin-2 dehyd 20.4 73 0.0025 26.3 3.3 65 107-175 92-158 (223)
No 1
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.92 E-value=3.3e-25 Score=193.07 Aligned_cols=140 Identities=26% Similarity=0.391 Sum_probs=118.3
Q ss_pred hhhhhhhhccCCCCCCccccccccchhHHHHHHHHHH------------HHHHh-hhhcCCCCCchhhhcccccccHHHH
Q 029226 7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQR------------EIVSA-RSLHGDSLPEKLWFKQRFSIGVNEV 73 (197)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~i~~------------~ie~a-k~~~~~~lp~k~~~k~~l~iGVNeV 73 (197)
.||.|+|.++|+||++.||+..++.+..+.|++++++ .++.| +.+.+...|.|-. ..+..|+|+|
T Consensus 55 rq~~il~~rlkvpp~inqf~~~ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p--~~lk~GvneV 132 (255)
T 4a17_F 55 RQKRVLLQRLKVPPQIHQFTKTLDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKP--IVLKYGLNHI 132 (255)
T ss_dssp HHHHHHHHHSBCCHHHHGGGCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCC--CCEEECHHHH
T ss_pred HHHHHHHhcccCCCcccccCCCCChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCC--ceeecchHHH
Confidence 4789999999999999999999999999999999863 23222 1244554454322 3688999999
Q ss_pred HHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhh
Q 029226 74 TRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELV 153 (197)
Q Consensus 74 TKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~ 153 (197)
|++||++. +++||||.||||.+++.|||.||+++||||++|+++. +||++|
T Consensus 133 tKaIekgK-------------------------AqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~----~LG~av 183 (255)
T 4a17_F 133 TTLIENKQ-------------------------AKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKA----ALGKLV 183 (255)
T ss_dssp HHHHHTSC-------------------------CSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHH----HHHHHH
T ss_pred HHHHHcCC-------------------------ceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH----HHHHHh
Confidence 99999999 7999999999999999999999999999999999999 999999
Q ss_pred CCceeEEEEEeecCcc----hHHHHHHH
Q 029226 154 KLKTAIAVGIKAKGNI----INQLMDKI 177 (197)
Q Consensus 154 Gikta~Aigik~~~~~----~nk~~~~i 177 (197)
|.+++++++|...++. ++++++.|
T Consensus 184 GrKt~s~Vaitdv~~EDk~al~kLve~i 211 (255)
T 4a17_F 184 NKKTATAVALTEVRNEDKAKLQQFSELF 211 (255)
T ss_dssp TSSCCSEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeeccCHHHHHHHHHHHHHH
Confidence 9999999999876653 66677654
No 2
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.91 E-value=5.1e-26 Score=198.15 Aligned_cols=141 Identities=26% Similarity=0.392 Sum_probs=116.1
Q ss_pred hhhhhhhhccCCCCCCccccccccchhHHHHHHHH------------HHHHHHhh-hhcCCCCCchhhhcccccccHHHH
Q 029226 7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLI------------QREIVSAR-SLHGDSLPEKLWFKQRFSIGVNEV 73 (197)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~i------------~~~ie~ak-~~~~~~lp~k~~~k~~l~iGVNeV 73 (197)
.||.|+|.++|+||++.||+..++.+..+.|++++ +|.++.|. .+.++..|.|-. -.+..|+|+|
T Consensus 58 rqr~il~~rlKvppainqF~~~ld~~tatql~kl~~KYrPEtk~ekk~rL~~~a~~ka~gk~~~~krp--~~lk~GvneV 135 (258)
T 3iz5_H 58 RQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKP--IVVKYGLNHV 135 (258)
T ss_dssp CCSCCCCHHHHSCCSCSHHHHHHHHHHCCCCCCCCCCCCCTHHHHHHHHHHHHHHTTCCCCSSSSCCC--CCEEESHHHH
T ss_pred HHHHHHHhcccCCCcccccCCcCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCCCCCCCC--ceeecccHHH
Confidence 47899999999999999999988887766665553 34444432 134444444322 2577899999
Q ss_pred HHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhh
Q 029226 74 TRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELV 153 (197)
Q Consensus 74 TKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~ 153 (197)
|++||++. +++||||.||||.+++.|||.||+++||||++|+++. +||+++
T Consensus 136 TklVE~kK-------------------------AqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~Ka----rLG~~v 186 (258)
T 3iz5_H 136 TYLIEQSK-------------------------AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA----RLGSIV 186 (258)
T ss_dssp HHHHHTTC-------------------------EEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHH----HHHHHT
T ss_pred HHHHHcCc-------------------------ceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHH----HHHHHh
Confidence 99999999 8999999999999999999999999999999999999 999999
Q ss_pred CCceeEEEEEeecCc----chHHHHHHHh
Q 029226 154 KLKTAIAVGIKAKGN----IINQLMDKIL 178 (197)
Q Consensus 154 Gikta~Aigik~~~~----~~nk~~~~il 178 (197)
|.+++++++|...++ .++++++.|-
T Consensus 187 grKtct~Va~t~v~~eDk~aLakLveair 215 (258)
T 3iz5_H 187 HKKTASVLCLTTVKNEDKLEFSKILEAIK 215 (258)
T ss_dssp TCSSCCSEEEEESCCSCCHHHHHHHHHHT
T ss_pred CCccceEEEEEecCHHHHHHHHHHHHHHH
Confidence 999999999887554 4889998764
No 3
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.88 E-value=3.6e-23 Score=181.31 Aligned_cols=141 Identities=28% Similarity=0.430 Sum_probs=82.2
Q ss_pred hhhhhhhhccCCCCCCccccccccchhHHHHHHHHHHH------------HHHhhh-hcC-CCCCchhhhcccccccHHH
Q 029226 7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQRE------------IVSARS-LHG-DSLPEKLWFKQRFSIGVNE 72 (197)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~i~~~------------ie~ak~-~~~-~~lp~k~~~k~~l~iGVNe 72 (197)
.||.++|+++|+||++.||+..++....+.|++++.+. +..|.. +.+ +..|.| -..+++.|+|+
T Consensus 65 rq~~il~~rlkvpp~inqf~~~ld~~~a~~l~~l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k--~~~~L~~G~ke 142 (266)
T 2zkr_f 65 RQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK--RPPVLRAGVNT 142 (266)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHTTSSTTTCCSCCSSS--SCCCCCBSHHH
T ss_pred HHHHHHHhhccCCCchhhccccccchhHHHHHHHHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCC--CCCeeeeChHH
Confidence 47899999999999999999999999999998886632 222211 122 223321 23689999999
Q ss_pred HHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhh
Q 029226 73 VTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGEL 152 (197)
Q Consensus 73 VTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a 152 (197)
|+++|+++. +++||||.||+|.+++.|||.||+++||||++|+++. +||++
T Consensus 143 V~KaIekgk-------------------------AkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~----eLG~A 193 (266)
T 2zkr_f 143 VTTLVENKK-------------------------AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKA----RLGHL 193 (266)
T ss_dssp HHHHHHTTC-------------------------CSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHH----HHHHH
T ss_pred HHHHHHhCC-------------------------ceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHH----HHHHH
Confidence 999999999 7999999999999999999999999999999999999 99999
Q ss_pred hCCceeEEEEEeecC----cchHHHHHHHh
Q 029226 153 VKLKTAIAVGIKAKG----NIINQLMDKIL 178 (197)
Q Consensus 153 ~Gikta~Aigik~~~----~~~nk~~~~il 178 (197)
||++++++++|.+.+ ..++++++.|-
T Consensus 194 ~Gkk~~s~VAItD~G~eD~~al~klve~ik 223 (266)
T 2zkr_f 194 VHRKTCTTVAFTQVNSEDKGALAKLVEAIR 223 (266)
T ss_dssp HTSSCCSEEEETTCSSTTTTHHHHHHHHHC
T ss_pred hCCCCceEEEEeecCcchHHHHHHHHHHHH
Confidence 999999999997654 34777777654
No 4
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.87 E-value=3.1e-23 Score=180.86 Aligned_cols=141 Identities=26% Similarity=0.326 Sum_probs=114.0
Q ss_pred hhhhhhhhccCCCCCCccccccccchhHHHHHHH------------HHHHHHHhhh-hcCCC--CCchhhhcccccccHH
Q 029226 7 ASRKLVHDVSKPPNSVPQESECYEGESLVRLLKL------------IQREIVSARS-LHGDS--LPEKLWFKQRFSIGVN 71 (197)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ge~l~~ll~~------------i~~~ie~ak~-~~~~~--lp~k~~~k~~l~iGVN 71 (197)
.||.|+|+++|+||++.||+..++....+.|+++ -+|.++.|+. +.+.. .|.|-. ..+..|+|
T Consensus 60 rq~~il~~rlkvpp~inqf~~~ld~~~a~~l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p--~~lk~G~k 137 (256)
T 3izc_H 60 RQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKP--YAVKYGLN 137 (256)
T ss_dssp CCSSCCCTTTTCCCSCSHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCS--CCEEESHH
T ss_pred HHHHHHHhcccCCCchhhcCCcCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCC--hhhhccHH
Confidence 4789999999999999999988887665555444 3455544421 33332 344321 47899999
Q ss_pred HHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhh
Q 029226 72 EVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGE 151 (197)
Q Consensus 72 eVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~ 151 (197)
+|+++||++. +++||||.||+|.+++.|||.||+++||||++|+++. +||+
T Consensus 138 eV~KaIekgK-------------------------AkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~----eLG~ 188 (256)
T 3izc_H 138 HVVALIENKK-------------------------AKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKA----RLGT 188 (256)
T ss_dssp HHHHHHHHTC-------------------------CSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHH----HHHH
T ss_pred HHHHHHHhCc-------------------------ceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHH----HHHH
Confidence 9999999999 7999999999999999999999999999999999999 9999
Q ss_pred hhCCceeEEEEEeecCc----chHHHHHHHh
Q 029226 152 LVKLKTAIAVGIKAKGN----IINQLMDKIL 178 (197)
Q Consensus 152 a~Gikta~Aigik~~~~----~~nk~~~~il 178 (197)
+||++++++++|.+.++ .++++++.|-
T Consensus 189 A~Gkk~~s~VAItD~g~eDk~al~kLve~ik 219 (256)
T 3izc_H 189 LVNQKTSAVAALTEVRAEDEAALAKLVSTID 219 (256)
T ss_dssp HTTCSSCCSEEEESSCCSCCHHHHHHHHHHH
T ss_pred HhCCCCcEEEEeecCChhhHHHHHHHHHHHH
Confidence 99999999999987653 3778887653
No 5
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.82 E-value=3.7e-20 Score=147.05 Aligned_cols=113 Identities=27% Similarity=0.428 Sum_probs=93.0
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCC
Q 029226 21 SVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNS 100 (197)
Q Consensus 21 ~~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~ 100 (197)
-+|++.|.-+.+.-..+++. +..|.. ++ +++.|+|+|+|+|+++.
T Consensus 4 ~~~~a~p~a~~~~~~ki~~~----L~lA~k-~g-----------kl~~G~~~v~kai~~gk------------------- 48 (134)
T 2ale_A 4 PNPKAFPLADAALTQQILDV----VQQAAN-LR-----------QLKKGANEATKTLNRGI------------------- 48 (134)
T ss_dssp CCTTCCSBCCHHHHHHHHHH----HHHHHH-TT-----------CEEESHHHHHHHHHHTC-------------------
T ss_pred CCccccCCCCHHHHHHHHHH----HHHHHH-cC-----------CcccCchHHHHHHHhCC-------------------
Confidence 36778888775555445544 444431 22 69999999999999999
Q ss_pred CCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCcee-EEEEEeec-CcchHHHHHHHh
Q 029226 101 KVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTA-IAVGIKAK-GNIINQLMDKIL 178 (197)
Q Consensus 101 ~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikta-~Aigik~~-~~~~nk~~~~il 178 (197)
+++||||.||+|.+++.|||.||+++||||++++++. +||++||.++. ++++|.+. ++++.++++++.
T Consensus 49 ------akLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~----eLG~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~ 118 (134)
T 2ale_A 49 ------SEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRV----ALGRACGVSRPVIAASITTNDASAIKTQIYAVK 118 (134)
T ss_dssp ------EEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHH----HHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHH
T ss_pred ------CeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHH----HHHHHhCCCCCeEEEEEEcCChHHHHHHHHHHH
Confidence 8999999999998899999999999999999999999 99999999875 67888875 467888888764
No 6
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.79 E-value=4.5e-20 Score=143.49 Aligned_cols=85 Identities=31% Similarity=0.470 Sum_probs=77.6
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCC
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk 143 (197)
..+..|+|+|+++||++. +++||||.||+|.+++.|||.||+++||||++|+++.
T Consensus 24 ~~l~~G~~~v~kaI~~gk-------------------------a~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~ 78 (113)
T 3jyw_G 24 YAVKYGLNHVVALIENKK-------------------------AKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKA 78 (113)
T ss_dssp SCEEESHHHHHHTTTTTC-------------------------CSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCST
T ss_pred chhhchHHHHHHHHHcCC-------------------------ceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 378999999999999999 7999999999999999999999999999999999999
Q ss_pred CCchhhhhhhCCceeEEEEEeecCc----chHHHHHHH
Q 029226 144 GGSLRLGELVKLKTAIAVGIKAKGN----IINQLMDKI 177 (197)
Q Consensus 144 ~~Sl~LG~a~Gikta~Aigik~~~~----~~nk~~~~i 177 (197)
+||++||++++++++|.+.++ .++++++.|
T Consensus 79 ----~LG~a~G~k~~a~vai~d~~~ed~~~l~~l~e~~ 112 (113)
T 3jyw_G 79 ----RLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTI 112 (113)
T ss_dssp ----TTHHHHCSSSCCSEEEECSCSSTTTTTHHHHTTT
T ss_pred ----HHHHHHCCCCcEEEEEEeCCHHhHHHHHHHHHhh
Confidence 999999999999999987553 477887654
No 7
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.79 E-value=2.1e-19 Score=144.68 Aligned_cols=115 Identities=30% Similarity=0.466 Sum_probs=94.7
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccC
Q 029226 19 PNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCG 98 (197)
Q Consensus 19 ~~~~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~ 98 (197)
.+-.|++.|..+.+.-.++++.+. .|.. ++ +++.|+|+|+|+|+++.
T Consensus 20 ~~~~~~a~Pla~~~l~~ki~~~L~----lA~k-ag-----------kl~~G~kev~KaI~~gk----------------- 66 (144)
T 2jnb_A 20 ADVNPKAYPLADAHLTKKLLDLVQ----QSCN-YK-----------QLRKGANEATKTLNRGI----------------- 66 (144)
T ss_dssp SCCCCCSSSBCCHHHHHHHHHHHH----HHHH-TT-----------CCCBCHHHHHHHHHHTC-----------------
T ss_pred ccCCcccCCCCCHHHHHHHHHHHH----HHHH-cC-----------CccccHHHHHHHHHhCC-----------------
Confidence 345788888887655555555544 4431 22 69999999999999999
Q ss_pred CCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCcee-EEEEEeec-CcchHHHHHH
Q 029226 99 NSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTA-IAVGIKAK-GNIINQLMDK 176 (197)
Q Consensus 99 ~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikta-~Aigik~~-~~~~nk~~~~ 176 (197)
+++||||.||+|.+++.|||.||+++||||+|++++. +||+|||.++. ++++|.+. ++++.+.+++
T Consensus 67 --------akLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~----eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~ 134 (144)
T 2jnb_A 67 --------SEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQ----ALGRACGVSRPVIACSVTIKEGSQLKQQIQS 134 (144)
T ss_dssp --------EEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSH----HHHHHHTCSSCCSEEEEECCTTCTTHHHHHH
T ss_pred --------CeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHH----HHHHHhCCCCceEEEEEEeCCcHHHHHHHHH
Confidence 8999999999998899999999999999999999999 99999999875 47888764 5778888887
Q ss_pred Hh
Q 029226 177 IL 178 (197)
Q Consensus 177 il 178 (197)
+.
T Consensus 135 ~~ 136 (144)
T 2jnb_A 135 IQ 136 (144)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 8
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.79 E-value=3.4e-19 Score=139.06 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=91.0
Q ss_pred CccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCC
Q 029226 22 VPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSK 101 (197)
Q Consensus 22 ~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
+|++.|+-+.+.-. +++..+..|+. ++ +++.|.|+|+++|+++.
T Consensus 4 ~~~a~p~a~~~l~~----kil~~L~lA~k-ag-----------klv~G~~~v~kai~~gk-------------------- 47 (122)
T 3o85_A 4 DPRAIPFANEELSL----ELLNLVKHGAS-LQ-----------AIKRGANEALKQVNRGK-------------------- 47 (122)
T ss_dssp CTTSCSBCCHHHHH----HHHHHHHHHHH-TT-----------CEEESHHHHHHHHHTTC--------------------
T ss_pred CCccCCCCCHHHHH----HHHHHHHHHHH-hC-----------CEeEcHHHHHHHHHcCC--------------------
Confidence 46777777754444 44445555541 22 69999999999999999
Q ss_pred CCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCce-eEEEEEeecCcchHHHHHHH
Q 029226 102 VPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKT-AIAVGIKAKGNIINQLMDKI 177 (197)
Q Consensus 102 ~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikt-a~Aigik~~~~~~nk~~~~i 177 (197)
+++||+|.||+|..++.|||.+|+++||||+|+.++. +||++||.++ +++++|.+.+. +++.++++
T Consensus 48 -----a~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~----eLG~a~Gk~~~vs~vaI~d~~~-~~~~~~~~ 114 (122)
T 3o85_A 48 -----AELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKN----ALGRACNVSVPTIVASIGKHDA-LGNVVAEI 114 (122)
T ss_dssp -----CSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHH----HHHHHTTCSSCCSEEEECCCTT-THHHHHHH
T ss_pred -----ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHH----HHHHHhCCCCCEEEEEEEcccc-hHHHHHHH
Confidence 7999999999998899999999999999999999999 9999999985 67899998877 77777665
No 9
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.78 E-value=8.2e-19 Score=135.59 Aligned_cols=104 Identities=26% Similarity=0.422 Sum_probs=89.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEE
Q 029226 31 GESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVI 110 (197)
Q Consensus 31 ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlV 110 (197)
=+.+++|.+++.+.+..|+. ++ +++.|.|+|+++|+++. +++|
T Consensus 7 ~~~p~~l~~~i~~~L~~A~k-ag-----------~l~~G~~~v~kal~~gk-------------------------a~lV 49 (120)
T 1vq8_F 7 FDVPADLEDDALEALEVARD-TG-----------AVKKGTNETTKSIERGS-------------------------AELV 49 (120)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-SS-----------CEEESHHHHHHHHHHTC-------------------------CSEE
T ss_pred CCCCHHHHHHHHHHHHHHHH-cC-----------CEeECHHHHHHHHHcCC-------------------------ceEE
Confidence 34567888889998888863 23 69999999999999999 7999
Q ss_pred EEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc-eeEEEEEeecCcchHHHHHH
Q 029226 111 LLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK-TAIAVGIKAKGNIINQLMDK 176 (197)
Q Consensus 111 lIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik-ta~Aigik~~~~~~nk~~~~ 176 (197)
|+|.||+|.+++.|||.+|+++||||++++++. +||++||.+ .+++++|.+.+.. +.+++.
T Consensus 50 iiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~----eLG~a~G~~~~~~~vaI~d~g~a-~~~~~~ 111 (120)
T 1vq8_F 50 FVAEDVQPEEIVMHIPELADEKGVPFIFVEQQD----DLGHAAGLEVGSAAAAVTDAGEA-DADVED 111 (120)
T ss_dssp EEESCCSSGGGTTTHHHHHHTTCCCEEEESCHH----HHHHHTTCSSCCSEEEESSCSSC-HHHHHH
T ss_pred EEeCCCChHHHHHHHHHHHHhcCCCEEEECCHH----HHHHHhCCCCCeEEEEEecCchH-HHHHHH
Confidence 999999998899999999999999999999999 999999999 7888999877543 344444
No 10
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.78 E-value=1.2e-18 Score=135.38 Aligned_cols=90 Identities=28% Similarity=0.387 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccC
Q 029226 36 RLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAAD 115 (197)
Q Consensus 36 ~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaD 115 (197)
+|-++++..+..|.. + ++++.|+|+|+|+|+++. +++||||.|
T Consensus 3 ~l~~ki~~~L~~a~k-~-----------gkl~~G~~~v~kai~~gk-------------------------akLViiA~D 45 (121)
T 2lbw_A 3 KLNKKVLKTVKKASK-A-----------KNVKRGVKEVVKALRKGE-------------------------KGLVVIAGD 45 (121)
T ss_dssp HHHHHHHHHHHHHHT-T-----------TCEEESHHHHHHHHHHSC-------------------------CCEEEECTT
T ss_pred HHHHHHHHHHHHHHH-c-----------CCccccHHHHHHHHHcCC-------------------------ceEEEEeCC
Confidence 566777777877752 2 369999999999999999 799999999
Q ss_pred CChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCce-eEEEEEeec
Q 029226 116 CSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKT-AIAVGIKAK 166 (197)
Q Consensus 116 v~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikt-a~Aigik~~ 166 (197)
|+|.+++.|||.||+++||||++++++. +||++||.++ +.+++|.+.
T Consensus 46 ~~~~~~~~~l~~lc~~~~VP~~~v~sk~----eLG~a~g~k~~~s~v~I~d~ 93 (121)
T 2lbw_A 46 IWPADVISHIPVLCEDHSVPYIFIPSKQ----DLGAAGATKRPTSVVFIVPG 93 (121)
T ss_dssp CSCTTHHHHHHHHHHHTCCCEEECCCHH----HHHHHHTCSSCCSEEEECCS
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEECCHH----HHHHHhCCCCCEEEEEEEcC
Confidence 9998899999999999999999999999 9999999876 567788765
No 11
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.76 E-value=1.7e-18 Score=134.65 Aligned_cols=104 Identities=30% Similarity=0.456 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEE
Q 029226 31 GESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVI 110 (197)
Q Consensus 31 ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlV 110 (197)
=+.+++|.+++++.+..|+. + ++++.|.|+|+++|+++. +++|
T Consensus 6 ~~~p~~l~~~i~~~L~lA~k-a-----------gkl~~G~~~v~kal~~gk-------------------------a~lV 48 (124)
T 2fc3_A 6 FEVPEDLAEKAYEAVKRARE-T-----------GRIKKGTNETTKAVERGL-------------------------AKLV 48 (124)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-H-----------SEEEESHHHHHHHHHTTC-------------------------CSEE
T ss_pred CCCCHHHHHHHHHHHHHHHH-h-----------CCccCCHHHHHHHHHcCC-------------------------ceEE
Confidence 34567888888888888863 2 369999999999999999 7999
Q ss_pred EEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc-eeEEEEEeecCcchHHHHHH
Q 029226 111 LLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK-TAIAVGIKAKGNIINQLMDK 176 (197)
Q Consensus 111 lIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik-ta~Aigik~~~~~~nk~~~~ 176 (197)
|+|.||+|.+++.||+.+|+++||||+++.++. +||++||.+ .+++++|.+.+. .+++++.
T Consensus 49 iiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~----eLG~a~G~~~~~~~vaI~d~g~-a~~~~~~ 110 (124)
T 2fc3_A 49 VIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKK----RLGEAAGIEVAAASVAIIEPGD-AETLVRE 110 (124)
T ss_dssp EEETTCSSGGGTTTHHHHHHHTTCCEEEESCHH----HHHHHTTCSSCCSEEEEEECGG-GHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHHHcCCCEEEECCHH----HHHHHhCCCCCEEEEEEECcch-HHHHHHH
Confidence 999999998899999999999999999999999 999999999 688899887653 2334433
No 12
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.76 E-value=8.6e-19 Score=135.29 Aligned_cols=96 Identities=28% Similarity=0.435 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEE
Q 029226 32 ESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVIL 111 (197)
Q Consensus 32 e~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVl 111 (197)
+.+++|.+++.+.+..|+. + ++++.|.|+|+++|+++. +++||
T Consensus 6 ~~p~~l~~~i~~~L~lA~k-a-----------g~l~~G~~~v~kal~~gk-------------------------a~lVi 48 (119)
T 1rlg_A 6 EVPEDMQNEALSLLEKVRE-S-----------GKVKKGTNETTKAVERGL-------------------------AKLVY 48 (119)
T ss_dssp -CCSHHHHHHHHHHHHHHH-H-----------SEEEESHHHHHHHHTTTC-------------------------CSEEE
T ss_pred CCCHHHHHHHHHHHHHHHH-h-----------CCeeECHHHHHHHHHcCC-------------------------CcEEE
Confidence 4566788888888888863 2 369999999999999999 79999
Q ss_pred EccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc-eeEEEEEeecCc
Q 029226 112 LAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK-TAIAVGIKAKGN 168 (197)
Q Consensus 112 IAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik-ta~Aigik~~~~ 168 (197)
+|.||+|..++.|||.+|+++||||++++++. +||++||.+ .+++++|.+.+.
T Consensus 49 iA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~----eLG~a~G~~~~~~~vaI~d~g~ 102 (119)
T 1rlg_A 49 IAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKN----DLGRAVGIEVPCASAAIINEGE 102 (119)
T ss_dssp EESCCSCSTTTTHHHHHHHHHTCCEEEESCHH----HHHHHTTCSSCCSEEEEEECGG
T ss_pred EeCCCChHHHHHHHHHHHHHcCCCEEEeCCHH----HHHHHhCCCCCeEEEEEecCch
Confidence 99999998899999999999999999999999 999999999 788899987653
No 13
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.76 E-value=5.1e-18 Score=134.33 Aligned_cols=113 Identities=25% Similarity=0.404 Sum_probs=88.5
Q ss_pred CccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCC
Q 029226 22 VPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSK 101 (197)
Q Consensus 22 ~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~ 101 (197)
.|++.|..+.+.-.+++ ..+..|+. ++ +++.|.|+|+++|+++.
T Consensus 14 ~~~a~p~~~~~l~~ki~----~~L~lA~k-ag-----------klv~G~~~v~kal~~gk-------------------- 57 (135)
T 2aif_A 14 NPKAFPLASPDLNNKII----NLVQQACN-YK-----------QLRKGANEATKALNRGI-------------------- 57 (135)
T ss_dssp ----CCBCCSHHHHHHH----HHHHHHHH-TT-----------CEEESHHHHHHHHHTTC--------------------
T ss_pred CccccccccHHHHHHHH----HHHHHHHH-cC-----------CcccCHHHHHHHHHcCC--------------------
Confidence 35777766654444444 44444541 22 69999999999999999
Q ss_pred CCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCceeE-EEEEeec-CcchHHHHHHHhc
Q 029226 102 VPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAI-AVGIKAK-GNIINQLMDKILH 179 (197)
Q Consensus 102 ~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikta~-Aigik~~-~~~~nk~~~~il~ 179 (197)
+++||+|.||+|..++.||+.+|+++||||+++.++. +||++||.++.+ +++|.+. ++++.++++++..
T Consensus 58 -----aklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~----eLG~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~ 128 (135)
T 2aif_A 58 -----AEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKV----ALGRACGVSRPVIAAAITSKDGSSLSSQITELKD 128 (135)
T ss_dssp -----EEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHH----HHHHHTTCSSCCSEEEEECCTTCTTHHHHHHHHH
T ss_pred -----CeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHH----HHHHHhCCCCcEEEEEEEcCCcHHHHHHHHHHHH
Confidence 8999999999998899999999999999999999999 999999998754 7777754 4678888888754
No 14
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.76 E-value=1.4e-18 Score=134.73 Aligned_cols=105 Identities=27% Similarity=0.449 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCce
Q 029226 28 CYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQL 107 (197)
Q Consensus 28 ~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 107 (197)
|..=+.++++-+++++.+..| + +++.|.|+|+++|+++. +
T Consensus 7 ~v~~~~p~~l~~k~~~ll~~A----g-----------kl~~G~~~v~kai~~gk-------------------------a 46 (120)
T 1xbi_A 7 YVKFKVPEEIQKELLDAVAKA----Q-----------KIKKGANEVTKAVERGI-------------------------A 46 (120)
T ss_dssp TCCSCCCHHHHHHHHHHHHTC----S-----------EEEESHHHHHHHHHHTC-------------------------C
T ss_pred eecccCCHHHHHHHHHHHHHc----C-----------CccccHHHHHHHHHcCC-------------------------c
Confidence 445567788888888888755 2 69999999999999999 7
Q ss_pred EEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc-eeEEEEEeecCcc--hHHHHHH
Q 029226 108 QVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK-TAIAVGIKAKGNI--INQLMDK 176 (197)
Q Consensus 108 qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik-ta~Aigik~~~~~--~nk~~~~ 176 (197)
++||+|.||+|.+++.|||.+|+++||||++++++. +||++||.+ .+++++|.+.+.. +.++++.
T Consensus 47 ~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~----eLG~a~G~~~~~s~vaI~d~g~a~~l~~l~~~ 114 (120)
T 1xbi_A 47 KLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQ----DLGKAAGLEVAASSVAIINEGDAEELKVLIEK 114 (120)
T ss_dssp SEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHH----HHHHHTTCSSCCSEEEEEECSCHHHHHHHHHH
T ss_pred eEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHH----HHHHHhCCCCCEEEEEEeccchHHHHHHHHHH
Confidence 999999999999899999999999999999999999 999999999 7888998876532 4444443
No 15
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.73 E-value=6.9e-18 Score=132.72 Aligned_cols=93 Identities=22% Similarity=0.338 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccC
Q 029226 36 RLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAAD 115 (197)
Q Consensus 36 ~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaD 115 (197)
++-+.+++.+..|.. . ++++.|+|+++|+|+++. +++||||.|
T Consensus 7 ~i~~~l~~~L~~A~~-~-----------gkl~~G~~~v~Kai~~gk-------------------------a~LViiA~D 49 (126)
T 2xzm_U 7 QLNEVLAKVIKSSNC-Q-----------DAISKGLHEVLRTIEAKQ-------------------------ALFVCVAED 49 (126)
T ss_dssp HHHHHHHHHHTTTTS-S-----------SCEEESHHHHHHHHHHTC-------------------------CSEEEEESS
T ss_pred cHHHHHHHHHHHHHH-c-----------CCEeecHHHHHHHHHcCC-------------------------ceEEEEeCC
Confidence 455666777766652 2 369999999999999999 799999999
Q ss_pred CChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCC----------ce--eEEEEEeecCcc
Q 029226 116 CSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKL----------KT--AIAVGIKAKGNI 169 (197)
Q Consensus 116 v~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gi----------kt--a~Aigik~~~~~ 169 (197)
|+|..++.|||.||+++||||++|+++. +||+|||+ ++ +.+++|++.+..
T Consensus 50 ~~p~~~~~~i~~lc~~~~Ip~~~v~sk~----~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 50 CDQGNYVKLVKALCAKNEIKYVSVPKRA----SLGEYLGHFTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp CCSTTHHHHHHHHHHHTTCCEEEESCSH----HHHHHHTCCCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred CChHHHHHHHHHHHHHhCCCEEEECCHH----HHHHHHCCCccccccCcCceeeEEEEEEEecCcc
Confidence 9998999999999999999999999999 99999998 54 788888876554
No 16
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.69 E-value=2.3e-17 Score=120.40 Aligned_cols=70 Identities=27% Similarity=0.462 Sum_probs=64.5
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCC
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk 143 (197)
++++.|.|+|+|+|+++. +++||||.||+| +++.|||.+|+++||||++++++.
T Consensus 10 gk~~~G~~~v~kai~~gk-------------------------aklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~ 63 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGS-------------------------VKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMK 63 (82)
T ss_dssp SEEEESHHHHHHHHTTTC-------------------------EEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHH
T ss_pred CCeeEcHHHHHHHHHcCC-------------------------eeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHH
Confidence 379999999999999999 899999999999 799999999999999999999999
Q ss_pred CCchhhhhhhCCce-eEEEEE
Q 029226 144 GGSLRLGELVKLKT-AIAVGI 163 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt-a~Aigi 163 (197)
+||++||.++ +++++|
T Consensus 64 ----eLG~a~Gk~~~~~~~ai 80 (82)
T 3v7e_A 64 ----KLGKACGIEVGAAAVAI 80 (82)
T ss_dssp ----HHHHHHTCSSCCSEEEE
T ss_pred ----HHHHHhCCCCCEEEEEE
Confidence 9999999974 555565
No 17
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.69 E-value=4.9e-17 Score=134.07 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHH--HhcCccCCCCCCCCCCccccCCCCCCCCceE
Q 029226 31 GESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVL--ERMAPRANMGISPQQPHILCGNSKVPSVQLQ 108 (197)
Q Consensus 31 ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaL--Er~~~~~~~~~~~~~~~~~~~~~~~p~~~~q 108 (197)
++...++-+.+++.+..|.. .+++++|+||++|+| +++. +.
T Consensus 13 ~~~m~~l~~al~evLk~A~~------------~~~l~~G~kEt~KaL~~~k~~-------------------------a~ 55 (165)
T 2kg4_A 13 TERMDKVGDALEEVLSKALS------------QRTITVGVYEAAKLLNVDPDN-------------------------VV 55 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHH------------HTCEEECGGGHHHHHHHCTTT-------------------------EE
T ss_pred hhhHHHHHHHHHHHHHHHHH------------cCCeeecHHHHHHHHhcCCCc-------------------------EE
Confidence 34557899999999998873 236999999999999 8888 89
Q ss_pred EEEEccCCC-hhhHHHhHH-----HHHHhcCCCEEEEcCCCCCchhhhhhhCC---------------ceeEEEEEeecC
Q 029226 109 VILLAADCS-PRWLIKHLP-----GLALSRNVPVIFVKDKKGGSLRLGELVKL---------------KTAIAVGIKAKG 167 (197)
Q Consensus 109 lVlIAaDv~-P~~Li~HLP-----~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gi---------------kta~Aigik~~~ 167 (197)
+||||.||+ |..++.||| .||+++||||++|++++ +||+|||+ +.+.++.|++.+
T Consensus 56 lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k----~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g 131 (165)
T 2kg4_A 56 LCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPG----RLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPH 131 (165)
T ss_dssp EEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHH----HHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCS
T ss_pred EEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHH----HHHHHHCCcccccccccccCCCcccceEEEEeccc
Confidence 999999997 666666766 99999999999999999 99999998 335666676654
No 18
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.66 E-value=6.1e-17 Score=130.70 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC
Q 029226 37 LLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC 116 (197)
Q Consensus 37 ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv 116 (197)
+-+.|++.+..|.. . +++++|+||++|+|+++. +++||||.||
T Consensus 24 ~~~aL~~vLk~A~~-~-----------g~l~~G~~et~Kal~kg~-------------------------a~LvvLA~D~ 66 (143)
T 3u5c_M 24 IEDALKVVLRTALV-H-----------DGLARGLRESTKALTRGE-------------------------ALLVVLVSSV 66 (143)
T ss_dssp SSHHHHHHHHHHHH-T-----------TCEEESHHHHHHHHSSTT-------------------------CSCEECCSCC
T ss_pred HHHHHHHHHHHHHH-c-----------CCEeEcHHHHHHHHhcCc-------------------------eeEEEEeCCC
Confidence 34556666666652 2 369999999999999998 7999999999
Q ss_pred ChhhHHHhHHHHHH--hcCCCEEEEcCCCCCchhhhhhhCCc------------eeEEEEEeecCcc--hHHHHHHHh
Q 029226 117 SPRWLIKHLPGLAL--SRNVPVIFVKDKKGGSLRLGELVKLK------------TAIAVGIKAKGNI--INQLMDKIL 178 (197)
Q Consensus 117 ~P~~Li~HLP~Lc~--~rnIP~v~V~skk~~Sl~LG~a~Gik------------ta~Aigik~~~~~--~nk~~~~il 178 (197)
+|..+++||+.||+ ++||||++|++++ +||+|||+. .+.+++|++.+.. .-..+.+.+
T Consensus 67 ~~~~i~k~i~~lC~~~e~~IP~i~V~s~k----eLG~a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~l~~~~ 140 (143)
T 3u5c_M 67 TEANIIKLVEGLANDPENKVPLIKVADAK----QLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEHF 140 (143)
T ss_dssp STTHHHHHHHHHHHCSSSCCCCCCCSCHH----HHHHHSSCCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhCCCEEEECCHH----HHhHHhCcCccccCCCccccceeEEEEEcccchhhHHHHHHHHHH
Confidence 99999999999999 9999999999999 999999984 1556788876543 334444444
No 19
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.60 E-value=3.1e-15 Score=112.22 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=65.6
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~ 144 (197)
+++.|.++|+++|+++. +++||+|.||+|. ..+||+.+|+.++|||+++.++.
T Consensus 18 k~v~G~~~v~kai~~gk-------------------------a~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~- 70 (101)
T 3on1_A 18 QLLTGEEQVVKAVQNGQ-------------------------VTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQ- 70 (101)
T ss_dssp CEEESHHHHHHHHHTTC-------------------------CSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHH-
T ss_pred CEeECHHHHHHHHHcCC-------------------------CcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHH-
Confidence 69999999999999999 7999999999995 78999999999999999999999
Q ss_pred CchhhhhhhCCceeEEEEEee
Q 029226 145 GSLRLGELVKLKTAIAVGIKA 165 (197)
Q Consensus 145 ~Sl~LG~a~Gikta~Aigik~ 165 (197)
+||++||.+...+++|.+
T Consensus 71 ---eLG~a~Gk~~~~~vai~d 88 (101)
T 3on1_A 71 ---MLGRAIGKHERVVIGVKD 88 (101)
T ss_dssp ---HHHHHTTSSCCSEEEECC
T ss_pred ---HHHHHhCCcCeEEEEEEC
Confidence 999999998666788854
No 20
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.59 E-value=3.2e-15 Score=112.43 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=70.2
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~ 144 (197)
+++.|.++|+++|+++. +++||+|+||+|. ...||+.+|+.++|||+++.++.
T Consensus 19 k~v~G~~~v~kai~~gk-------------------------a~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~- 71 (101)
T 3v7q_A 19 KVVSGEDLVIKEIRNAR-------------------------AKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRA- 71 (101)
T ss_dssp CEEESHHHHHHHHHTTC-------------------------CSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHH-
T ss_pred hcccchhhhHHHHhcCc-------------------------eeEEEEecccccc-chhhhcccccccCCCeeeechHH-
Confidence 69999999999999999 7999999999996 88999999999999999999998
Q ss_pred CchhhhhhhCCceeEEEEEeecCcchHHHHHHH
Q 029226 145 GSLRLGELVKLKTAIAVGIKAKGNIINQLMDKI 177 (197)
Q Consensus 145 ~Sl~LG~a~Gikta~Aigik~~~~~~nk~~~~i 177 (197)
+||.+||.+...+++|. +.+..+.+.+.
T Consensus 72 ---eLG~A~Gk~~~~~~ai~--D~g~a~~i~~~ 99 (101)
T 3v7q_A 72 ---VLGRSIGKEARVVVAVT--DQGFANKLISL 99 (101)
T ss_dssp ---HHHHHTTSSCCSEEEEC--CHHHHHHHHHH
T ss_pred ---HHHhhhCccceEEEEEe--ccHHHHHHHHh
Confidence 99999999865668876 44444444443
No 21
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=3.3e-15 Score=113.95 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=66.0
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEE-cCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFV-KDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V-~skk 143 (197)
+++.|.|+|+++|+++. +++||+|.|| |.+++.|||.+|+++||||+.+ .++.
T Consensus 21 kl~~G~~~v~kai~~gk-------------------------a~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~ 74 (110)
T 3cpq_A 21 KVILGSKRTIKFVKHGE-------------------------GKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSL 74 (110)
T ss_dssp EEEESHHHHHHHHHTTC-------------------------CSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHH
T ss_pred CeeeCHHHHHHHHHcCC-------------------------ceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHH
Confidence 69999999999999999 7999999999 7789999999999999997776 8998
Q ss_pred CCchhhhhhhCCcee-EEEEEeecC
Q 029226 144 GGSLRLGELVKLKTA-IAVGIKAKG 167 (197)
Q Consensus 144 ~~Sl~LG~a~Gikta-~Aigik~~~ 167 (197)
+||++||.++. ++++|.+.+
T Consensus 75 ----eLG~a~G~~~~~s~vaI~d~g 95 (110)
T 3cpq_A 75 ----ELGAVCGKPFPVAALLVLDEG 95 (110)
T ss_dssp ----HHHHHTTCSSCCSEEEEEECT
T ss_pred ----HHHHHhCCccceEEEEEecCC
Confidence 99999999854 578887654
No 22
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.57 E-value=5.5e-15 Score=114.07 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=67.5
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEE-cCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFV-KDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V-~skk 143 (197)
+++.|.|+|+|+|+++. +++||||.||+| ++.+||+.+|+.+||||+++ .++.
T Consensus 26 k~~~G~~~t~kai~~gk-------------------------akLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~ 79 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSL-------------------------GKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNV 79 (112)
T ss_dssp EEEESHHHHHHHHHTTC-------------------------CSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTC
T ss_pred CeeECHHHHHHHHHcCC-------------------------ceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHH
Confidence 69999999999999999 799999999998 68999999999999999999 8999
Q ss_pred CCchhhhhhhCCc-eeEEEEEeecC
Q 029226 144 GGSLRLGELVKLK-TAIAVGIKAKG 167 (197)
Q Consensus 144 ~~Sl~LG~a~Gik-ta~Aigik~~~ 167 (197)
+||++||.. ++.+++|.+.+
T Consensus 80 ----eLG~A~Gk~~~v~~vaI~D~G 100 (112)
T 3iz5_f 80 ----DLGTACGKYYRVCCLSILDPG 100 (112)
T ss_dssp ----THHHHHCTTCSSCEEEEECCS
T ss_pred ----HHHHHhCCccceEEEEEeccc
Confidence 999999997 56778887765
No 23
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.56 E-value=3.5e-15 Score=112.80 Aligned_cols=74 Identities=12% Similarity=0.266 Sum_probs=67.5
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEE-EEcCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVI-FVKDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v-~V~skk 143 (197)
+++.|.++|+++|+++. +++||+|.||+|. ...||+.+|+.++|||+ |+.++.
T Consensus 22 klv~G~~~v~kai~~gk-------------------------aklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~ 75 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGT-------------------------AKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNV 75 (104)
T ss_dssp EEEESHHHHHHHHHHTC-------------------------CCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHH
T ss_pred CEeECHHHHHHHHHcCC-------------------------ceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHH
Confidence 69999999999999999 7999999999995 78999999999999999 799999
Q ss_pred CCchhhhhhhCCce-eEEEEEeecCc
Q 029226 144 GGSLRLGELVKLKT-AIAVGIKAKGN 168 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt-a~Aigik~~~~ 168 (197)
+||++||... +.+++|.+.+.
T Consensus 76 ----eLG~a~Gk~~~~~~vaI~D~G~ 97 (104)
T 4a18_G 76 ----ELGTACGKYHRCSTMAILDAGD 97 (104)
T ss_dssp ----HHHHHTTCSSCCSEEEEEECSS
T ss_pred ----HHHHHhCCccCEEEEEEeccch
Confidence 9999999986 56788887653
No 24
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.55 E-value=5.6e-15 Score=111.99 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccC
Q 029226 36 RLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAAD 115 (197)
Q Consensus 36 ~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaD 115 (197)
.+.+++...+..|+. ++ +++.|.++|+++|+++. +++||+|.|
T Consensus 5 k~~~~i~~~L~la~k-ag-----------k~v~G~~~v~kai~~gk-------------------------aklVilA~D 47 (105)
T 3u5e_c 5 KSQESINQKLALVIK-SG-----------KYTLGYKSTVKSLRQGK-------------------------SKLIIIAAN 47 (105)
T ss_dssp ----CHHHHHHHHHT-TS-----------EEEESHHHHHHHHHTTC-------------------------CSEEEECTT
T ss_pred hHHHHHHHHHHHHHH-hC-----------CeeECHHHHHHHHHcCC-------------------------ceEEEEeCC
Confidence 345556666666652 22 69999999999999999 799999999
Q ss_pred CChhhHHHhHHHHHHhcCCCEE-EEcCCCCCchhhhhhhCCce-eEEEEEeecCc
Q 029226 116 CSPRWLIKHLPGLALSRNVPVI-FVKDKKGGSLRLGELVKLKT-AIAVGIKAKGN 168 (197)
Q Consensus 116 v~P~~Li~HLP~Lc~~rnIP~v-~V~skk~~Sl~LG~a~Gikt-a~Aigik~~~~ 168 (197)
|+| ...+||+.+|+.+||||+ |+.++. +||.+||... +.+++|.+.+.
T Consensus 48 ~~~-~~~~~i~~~c~~~~ip~~~~~~s~~----eLG~A~Gk~~~~~~vaI~D~G~ 97 (105)
T 3u5e_c 48 TPV-LRKSELEYYAMLSKTKVYYFQGGNN----ELGTAVGKLFRVGVVSILEAGD 97 (105)
T ss_dssp SCH-HHHHHHHHHHHHHTCEEEECSSCHH----HHHHHTTCSSCCSEEEEEECCS
T ss_pred CCH-HHHHHHHHHHHHcCCCEEEeCCCHH----HHHHHhCCcccEEEEEEeccch
Confidence 987 588999999999999999 799999 9999999975 55788887653
No 25
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.55 E-value=1.2e-14 Score=108.78 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=65.1
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEE-cCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFV-KDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V-~skk 143 (197)
+++.|.|+|+++|+++. +++||+|.|+ |.+++.|||.+|+++||||+.+ .++.
T Consensus 16 kl~~G~~~v~kai~~gk-------------------------a~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~~~~s~~ 69 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGG-------------------------AKLIIVARNA-RPDIKEDIEYYARLSGIPVYEFEGTSV 69 (101)
T ss_dssp EEEESHHHHHHHHHHTC-------------------------CSEEEEETTS-CHHHHHHHHHHHHHHTCCEEEESSCHH
T ss_pred CEeECHHHHHHHHHcCC-------------------------CcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEecCCHH
Confidence 69999999999999999 7999999996 5589999999999999997775 8999
Q ss_pred CCchhhhhhhCCce-eEEEEEeecC
Q 029226 144 GGSLRLGELVKLKT-AIAVGIKAKG 167 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt-a~Aigik~~~ 167 (197)
+||++||.++ +++++|.+.+
T Consensus 70 ----eLG~a~G~~~~~~~vai~d~g 90 (101)
T 1w41_A 70 ----ELGTLLGRPHTVSALAVVDPG 90 (101)
T ss_dssp ----HHHHHTTCSSCCCEEEEEECT
T ss_pred ----HHHHHhCCCCcEEEEEEecCC
Confidence 9999999984 4678887654
No 26
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.54 E-value=3.6e-14 Score=106.04 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=66.1
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCE-EEEcCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPV-IFVKDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~-v~V~skk 143 (197)
+++.|.++|+++|+++. +++||+|.|++ .++++||+.+|+++|||| .|+.++.
T Consensus 15 k~v~G~~~v~kai~~gk-------------------------a~lViiA~D~~-~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGG-------------------------AKLIIVAKNAP-KEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp CEEESHHHHHHHHHHTC-------------------------CSEEEEECCCC-HHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred CEeECHHHHHHHHHcCC-------------------------ccEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 69999999999999999 79999999975 579999999999999996 5559999
Q ss_pred CCchhhhhhhCCce-eEEEEEeecCc
Q 029226 144 GGSLRLGELVKLKT-AIAVGIKAKGN 168 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt-a~Aigik~~~~ 168 (197)
+||++||.+. +.+++|.+.+.
T Consensus 69 ----eLG~a~Gk~~~~~~vaI~d~g~ 90 (99)
T 3j21_Z 69 ----ELGTLLGKPFVVASLAIVDPGE 90 (99)
T ss_dssp ----GGGGTTCSTTCSEEEEESSCSS
T ss_pred ----HHHHHHCCCCCEEEEEEEccch
Confidence 9999999985 67899887653
No 27
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.23 E-value=5.3e-12 Score=98.89 Aligned_cols=84 Identities=14% Similarity=0.290 Sum_probs=64.7
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEE-EEcCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVI-FVKDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v-~V~skk 143 (197)
+++.|.++|+++|+++. +++||+|.||+| .+..||+.+|...++|+. |+.++.
T Consensus 27 klv~G~~~v~kaIr~gk-------------------------akLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~ 80 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGK-------------------------AKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNI 80 (125)
T ss_dssp EEEESHHHHHHHHHTTC-------------------------CSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHH
T ss_pred CeeeCHHHHHHHHHcCC-------------------------ceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHH
Confidence 69999999999999999 799999999999 699999999887777743 677777
Q ss_pred CCchhhhhhhCCce-eEEEEEeecCc--chHHHHHHHh
Q 029226 144 GGSLRLGELVKLKT-AIAVGIKAKGN--IINQLMDKIL 178 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt-a~Aigik~~~~--~~nk~~~~il 178 (197)
+||.+||... +++++|.+.+. .+.+++++..
T Consensus 81 ----eLG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~~~ 114 (125)
T 3vi6_A 81 ----ELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTG 114 (125)
T ss_dssp ----HHHHHTTCSSCCCEEEEEECTTCCCC--------
T ss_pred ----HHHHHhCCcccEEEEEEeCchhHHHHHHHHHhhc
Confidence 9999999975 44788887653 3555555543
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=98.93 E-value=5.1e-09 Score=84.87 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC
Q 029226 37 LLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC 116 (197)
Q Consensus 37 ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv 116 (197)
+-..+++.+..|.. ...+++|+.|..|+|++.+.. +.++|+|.||
T Consensus 9 v~~ALqeVLk~Al~------------~dgL~~Gl~EaaKaLdk~p~~-----------------------a~lCvLA~dc 53 (146)
T 3cg6_A 9 AGKALHELLLSAQR------------QGCLTAGVYESAKVLNVDPDN-----------------------VTFCVLAADE 53 (146)
T ss_dssp HHHHHHHHHHHHHH------------HTCEEESHHHHHHHHHHCGGG-----------------------EEEEEEECCT
T ss_pred HHHHHHHHHHHHHH------------hCCccccHHHHHHHHhcCCCe-----------------------EEEEEecCCC
Confidence 34455555555652 235999999999999997421 7999999999
Q ss_pred Ch------hhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc--------eeEEEEEeecCcc
Q 029226 117 SP------RWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK--------TAIAVGIKAKGNI 169 (197)
Q Consensus 117 ~P------~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik--------ta~Aigik~~~~~ 169 (197)
+- ...++.|-+||.+++||++.|++++ +||+++| + .+..+.|++.+..
T Consensus 54 d~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~k----kLgew~G-k~d~~g~pr~~sCvvV~d~g~e 115 (146)
T 3cg6_A 54 EDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQ----RLAAIVG-SDEEGGAPGDLHCILISNPNED 115 (146)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHH----HHHHHC-----------CCSEEEEECCC--
T ss_pred ccccchhHHHHHHHHHHHHhhcCCCeEEeCchh----HHHHHhC-CcCCCCCCCCCEEEEEecCCcc
Confidence 82 4678899999999999999999999 9999999 3 2446667765433
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=82.79 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEE
Q 029226 33 SLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILL 112 (197)
Q Consensus 33 ~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlI 112 (197)
....+-..+++.+..|.. ...+++|+.|..|+|++.+.. +.++|+
T Consensus 26 ~m~~v~~ALqeVLk~Al~------------~dgL~~Gl~EaaKaLd~~p~~-----------------------a~LCvL 70 (167)
T 3ffm_A 26 RMQGAGKALHELLLSAQR------------QGCLTAGVYESAKVLNVDPDN-----------------------VTFCVL 70 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH------------TTCEEESHHHHHHHHHHCGGG-----------------------EEEEEE
T ss_pred hhhhHHHHHHHHHHHHHH------------hCCccccHHHHHHHhccCCCe-----------------------EEEEEE
Confidence 344455666677776762 235999999999999996421 799999
Q ss_pred ccCCC-hhh-----HHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCc-------eeEEEEEeecCc
Q 029226 113 AADCS-PRW-----LIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLK-------TAIAVGIKAKGN 168 (197)
Q Consensus 113 AaDv~-P~~-----Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gik-------ta~Aigik~~~~ 168 (197)
|.||+ +.+ .++.|-+||.+++||++.|++++ +||+|+|.. .+..+.|++.+.
T Consensus 71 A~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~k----kLgew~G~~~~~~k~~~csCVlVtd~ge 135 (167)
T 3ffm_A 71 AAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQ----RLAAIVGAGEEAGAPGDLHCILISNPNE 135 (167)
T ss_dssp ECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHH----HHHHHHTTSCCSSSCSCCSEEEEECSSS
T ss_pred eCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcc----hHHHHhCcCCCCCCCCccEEEEECCCCc
Confidence 99985 222 57788899999999999999999 999999931 266677776543
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=91.85 E-value=0.6 Score=37.52 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.9
Q ss_pred hHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhh
Q 029226 120 WLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELV 153 (197)
Q Consensus 120 ~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~ 153 (197)
.++..|..+++..+.-+.+|+++. .-|+-+
T Consensus 120 ~~ve~L~e~~~~~G~~v~ivs~~~----eeG~ql 149 (166)
T 3ir9_A 120 DIVDEFSELADKSNAKVVFVSTDF----DEGSQL 149 (166)
T ss_dssp EHHHHHHHHHHHTTCEEEEECSCS----HHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEECCCC----hhHHHH
Confidence 578899999999999999999988 555433
No 31
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=88.82 E-value=1.8 Score=33.16 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=47.2
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC----Ch---hhHHHhHHHHHHhcCCCEE
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC----SP---RWLIKHLPGLALSRNVPVI 137 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv----~P---~~Li~HLP~Lc~~rnIP~v 137 (197)
..+.|+.+|.++++.+. +..++|..|. +| ..++. |..++...+.-+.
T Consensus 38 ~~~yG~~eV~~Ale~GA-------------------------VetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ 91 (124)
T 1x52_A 38 RAFYGLKQVEKANEAMA-------------------------IDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVR 91 (124)
T ss_dssp GEEESHHHHHHHHHTTC-------------------------EEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEE
T ss_pred cEEECHHHHHHHHHcCC-------------------------ccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEE
Confidence 68999999999999998 7888888542 22 33666 8888999999999
Q ss_pred EEcCCCCCchhhhhhh
Q 029226 138 FVKDKKGGSLRLGELV 153 (197)
Q Consensus 138 ~V~skk~~Sl~LG~a~ 153 (197)
+|++.. .-|+-+
T Consensus 92 ivs~~~----~~G~qL 103 (124)
T 1x52_A 92 IFSSLH----VSGEQL 103 (124)
T ss_dssp EECSSS----HHHHHH
T ss_pred EECCCC----ccHHHH
Confidence 999988 555444
No 32
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=81.89 E-value=9.3 Score=33.57 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCC
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk 143 (197)
...+.|+.+|.++++.+. +..++|..| +.++..|...|...|-.+.+|++..
T Consensus 298 g~a~yG~~eV~~Al~~Ga-------------------------VetLlv~d~---rd~~~~L~e~a~~~G~~V~ivs~~~ 349 (373)
T 3agk_A 298 GMIVYGEKDVEAALEMGA-------------------------VKTLLIHES---REDLEEWVEKAKSSGAQVIVVPESL 349 (373)
T ss_dssp CCEEESHHHHHHHHHTTC-------------------------EEEEEEETT---CTTHHHHHHHHTTTTCEEEEECTTS
T ss_pred CcEeeCHHHHHHHHHhCC-------------------------ccEEEEeCC---hhHHHHHHHHHHHcCCEEEEECCCC
Confidence 368999999999999999 888999877 3688899999999999999999886
No 33
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=79.52 E-value=2.6 Score=37.42 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCC-hhhHHHhHHHHHHhcCCCEEEEcCC
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCS-PRWLIKHLPGLALSRNVPVIFVKDK 142 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~-P~~Li~HLP~Lc~~rnIP~v~V~sk 142 (197)
...+.|+.+|.+++|.|. +..++|..+.. ... +..|..+|++.|.-+.+|++.
T Consensus 264 d~~~YG~~eV~~Ale~GA-------------------------VetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~ 317 (347)
T 2qi2_A 264 DMGVYGRDQTESALQMGA-------------------------LSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVS 317 (347)
T ss_dssp TCEEESHHHHHHHHHTTC-------------------------EEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCEEEcHHHHHHHHHcCC-------------------------CeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCC
Confidence 368999999999999999 88999987754 333 778889999999999999998
Q ss_pred CCCchhhhhhh
Q 029226 143 KGGSLRLGELV 153 (197)
Q Consensus 143 k~~Sl~LG~a~ 153 (197)
- +-|+-+
T Consensus 318 ~----e~G~qL 324 (347)
T 2qi2_A 318 N----DPGQIV 324 (347)
T ss_dssp S----HHHHHH
T ss_pred C----cchHHH
Confidence 8 445444
No 34
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=79.35 E-value=4.6 Score=35.80 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=48.5
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCCh---hhHHHhHHHHHHhcCCCEEEEcC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSP---RWLIKHLPGLALSRNVPVIFVKD 141 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P---~~Li~HLP~Lc~~rnIP~v~V~s 141 (197)
..+.|..+|.++++.+. +..++|..|..- ...+..|...++..|--+.+|++
T Consensus 280 ~a~yG~~eV~~Ale~GA-------------------------VetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~ 334 (357)
T 3j15_A 280 LVAYGLKEVEEAVNYGA-------------------------VETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSS 334 (357)
T ss_dssp TEEESTHHHHHHHHHTC-------------------------EEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEeCHHHHHHHHHhCC-------------------------CcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECC
Confidence 68999999999999998 788888755432 44778899999999999999998
Q ss_pred CCCCchhh
Q 029226 142 KKGGSLRL 149 (197)
Q Consensus 142 kk~~Sl~L 149 (197)
.-.+-.+|
T Consensus 335 ~~e~G~qL 342 (357)
T 3j15_A 335 EHEGGEKL 342 (357)
T ss_dssp SSTTHHHH
T ss_pred CCCcchhh
Confidence 87333344
No 35
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=77.67 E-value=8.5 Score=32.88 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~ 144 (197)
-++.|.|-|..+|+.+.. +..|++..+.... ..+..+|..+++|+..|+..
T Consensus 35 flveG~~~V~eaL~~~~~------------------------i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v~~~-- 85 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQ------------------------FIEVYGSSGTPLD---PALLDLCRQREIPVRLIDVS-- 85 (277)
T ss_dssp EEEESHHHHHHHHHTTCC------------------------EEEEEEETTSCCC---HHHHHHHHHTTCCEEEECHH--
T ss_pred EEEEeHHHHHHHHhCCCC------------------------eEEEEEeCCccCc---HHHHHHHHhcCCcEEEECHH--
Confidence 478999999999998652 6788998776553 34566788899999999654
Q ss_pred CchhhhhhhCCce--eEEEEEeec-CcchHHHH
Q 029226 145 GSLRLGELVKLKT--AIAVGIKAK-GNIINQLM 174 (197)
Q Consensus 145 ~Sl~LG~a~Gikt--a~Aigik~~-~~~~nk~~ 174 (197)
.|.++++..+ .++.-++.. ...+.++.
T Consensus 86 ---~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~ 115 (277)
T 3nk6_A 86 ---IVNQLFKAERKAKVFGIARVPRPARLADIA 115 (277)
T ss_dssp ---HHTTCC-----CCEEEEEECCCCCCHHHHH
T ss_pred ---HHHHhhCCCCCCeEEEEEecCCCCCHHHHh
Confidence 7888887654 333333443 44555444
No 36
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=72.99 E-value=4.9 Score=36.02 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC----Ch--hhHHHhHHHHHHhcCCCEE
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC----SP--RWLIKHLPGLALSRNVPVI 137 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv----~P--~~Li~HLP~Lc~~rnIP~v 137 (197)
...+.|+.+|.++++.+. +..++|..|. +| ..-+..|..+|...|--+.
T Consensus 296 ~~a~yG~~eV~~Ale~GA-------------------------VetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ 350 (386)
T 2vgn_A 296 DKAWYGEKEVVKAAEYGA-------------------------ISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKAL 350 (386)
T ss_dssp SSEEESHHHHHHHHHTTC-------------------------EEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcEEeCHHHHHHHHHcCC-------------------------cEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEE
Confidence 478999999999999998 8888888663 22 2236788888999999999
Q ss_pred EEcCCCCCchhhhhhh
Q 029226 138 FVKDKKGGSLRLGELV 153 (197)
Q Consensus 138 ~V~skk~~Sl~LG~a~ 153 (197)
+|++.- .-|+-+
T Consensus 351 ivs~~~----e~G~qL 362 (386)
T 2vgn_A 351 VLSTLH----SLGEEL 362 (386)
T ss_dssp EECTTS----HHHHHH
T ss_pred EECCCC----cchhhH
Confidence 999988 555444
No 37
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=71.03 E-value=7.2 Score=34.70 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=45.4
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChh----hHHHhHHHHHHhcCCCEEEE
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPR----WLIKHLPGLALSRNVPVIFV 139 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~----~Li~HLP~Lc~~rnIP~v~V 139 (197)
...+.|..+|.+++|.+. +..++|..|..-. ..+..|...++..|--+.++
T Consensus 264 ~~a~YG~~eV~~Ale~GA-------------------------VetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~ 318 (352)
T 3oby_A 264 ERVAYGLDEVREAHNYRA-------------------------IEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIM 318 (352)
T ss_dssp CSEEESHHHHHHHHTTTC-------------------------EEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEE
T ss_pred CcEEECHHHHHHHHHcCC-------------------------ceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEE
Confidence 368999999999999999 7888888654211 25678888999999999999
Q ss_pred cCCC
Q 029226 140 KDKK 143 (197)
Q Consensus 140 ~skk 143 (197)
++.-
T Consensus 319 S~~~ 322 (352)
T 3oby_A 319 STEF 322 (352)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 9987
No 38
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=68.37 E-value=17 Score=32.39 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCCh-----hhHHHhHHHHHHhcCCCEEE
Q 029226 64 QRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSP-----RWLIKHLPGLALSRNVPVIF 138 (197)
Q Consensus 64 ~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P-----~~Li~HLP~Lc~~rnIP~v~ 138 (197)
...+.|..+|.+++|.+. +..++|..|..- ..++..|...++..+--+.+
T Consensus 284 g~a~yG~~eV~~Ale~GA-------------------------VetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~i 338 (364)
T 3obw_A 284 ELVTYGLEQVKNAIEMGA-------------------------VETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVIL 338 (364)
T ss_dssp SSEEESHHHHHHHHHHTC-------------------------EEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CcEEECHHHHHHHHHhCC-------------------------CcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEE
Confidence 368999999999999999 888888866431 34678889999999999999
Q ss_pred EcCCC
Q 029226 139 VKDKK 143 (197)
Q Consensus 139 V~skk 143 (197)
|++.-
T Consensus 339 vs~~~ 343 (364)
T 3obw_A 339 VPKES 343 (364)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 99887
No 39
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=67.35 E-value=41 Score=30.65 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=25.6
Q ss_pred hHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhh
Q 029226 120 WLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELV 153 (197)
Q Consensus 120 ~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~ 153 (197)
.++..|..+|+..|.-+.+|.+.. .-|+-+
T Consensus 380 ~~ve~l~e~a~~~G~~v~~vs~~~----~eG~ql 409 (441)
T 3e20_C 380 LLSEWLAEHYKDYGANLEFVSDRS----QEGMQF 409 (441)
T ss_dssp EHHHHHHHHGGGGSCCEEEECTTS----HHHHHH
T ss_pred hHHHHHHHHHHHcCCEEEEECCCC----HHHHHH
Confidence 578889999999999999999988 666644
No 40
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=66.87 E-value=9.4 Score=32.00 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred cccccHHHHHHHHHhcC-ccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCC
Q 029226 65 RFSIGVNEVTRVLERMA-PRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~-~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk 143 (197)
.++.|.|-|..+|+.+. . +..|++..+..... ...|..+|..+++|+..|+..
T Consensus 13 ~~veG~~~V~eal~~~~~~------------------------i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v~~~- 66 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPER------------------------FQEVFILKGREDKR-LLPLIHALESQGVVIQLANRQ- 66 (253)
T ss_dssp EEEESHHHHHHHHHSCGGG------------------------EEEEEEESSCCCTT-THHHHHHHHHHTCEEEEECSH-
T ss_pred EEEEEHHHHHHHHhcCCCC------------------------eEEEEEECCccchh-HHHHHHHHHHCCCcEEEeCHH-
Confidence 47889999999999763 2 67888887654322 345666788899999888754
Q ss_pred CCchhhhhhhCCce
Q 029226 144 GGSLRLGELVKLKT 157 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt 157 (197)
.|-++++.++
T Consensus 67 ----~l~~ls~~~~ 76 (253)
T 1gz0_A 67 ----YLDEKSDGAV 76 (253)
T ss_dssp ----HHHHTTTSCC
T ss_pred ----HHHHHhCCCC
Confidence 7888888754
No 41
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=62.59 E-value=12 Score=27.12 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCC
Q 029226 67 SIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKK 143 (197)
Q Consensus 67 ~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk 143 (197)
+.|..+..+.+++.. +..|+||...........+-..|...++.+.++|+..
T Consensus 51 V~g~~~l~~~~~~~~-------------------------id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 51 IYRPKYLERLIKKHC-------------------------ISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp EECGGGHHHHHHHHT-------------------------CCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHH
T ss_pred EECHHHHHHHHHHCC-------------------------CCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHH
Confidence 456778888887766 5789999654334577788899999999999999765
No 42
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=57.62 E-value=12 Score=31.78 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=43.7
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcC-CCEEEEcCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRN-VPVIFVKDKK 143 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rn-IP~v~V~skk 143 (197)
-++.|.|-|..+|+.+.. +..|++..+..... ...|..+|..++ +|+..|+..
T Consensus 29 f~veG~~~v~eal~~~~~------------------------i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~~v~~~- 82 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIE------------------------LEQALVWEGGLNPE-EQQVYAALGRVGRLALLEVSEA- 82 (274)
T ss_dssp EEEESHHHHHHHHHTTCC------------------------EEEEEEETTCCCHH-HHHHHHCC-----CEEEEECHH-
T ss_pred EEEEeHHHHHHHHhCCCC------------------------eEEEEEEcCcccch-HHHHHHHHHhcCCccEEEeCHH-
Confidence 478899999999987642 68888987765432 344555677788 999888754
Q ss_pred CCchhhhhhhCCce
Q 029226 144 GGSLRLGELVKLKT 157 (197)
Q Consensus 144 ~~Sl~LG~a~Gikt 157 (197)
.|.++++..+
T Consensus 83 ----~l~~ls~~~~ 92 (274)
T 1ipa_A 83 ----VLKKLSVRDN 92 (274)
T ss_dssp ----HHHHHCCSSS
T ss_pred ----HHHHHhCCCC
Confidence 7888888754
No 43
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=54.10 E-value=77 Score=28.36 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.6
Q ss_pred hHHHhHHHHHHhcCCCEEEEcCCCCCchhhhh
Q 029226 120 WLIKHLPGLALSRNVPVIFVKDKKGGSLRLGE 151 (197)
Q Consensus 120 ~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~ 151 (197)
.++..|..+|...|-.+.+|++.- .-|+
T Consensus 373 d~ve~L~e~~~~~G~~V~ivs~~~----e~G~ 400 (437)
T 1dt9_A 373 PLLEWFANNYKKFGATLEIVTDKS----QEGS 400 (437)
T ss_dssp BHHHHHHHTCTTTTSCEEEECSSS----HHHH
T ss_pred cHHHHHHHHHHHcCCEEEEECCCC----hhHH
Confidence 467888899999999999999987 5564
No 44
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=50.81 E-value=63 Score=28.32 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=47.8
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC----Ch--hhHHHhHHHHHHhcCCCEEE
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC----SP--RWLIKHLPGLALSRNVPVIF 138 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv----~P--~~Li~HLP~Lc~~rnIP~v~ 138 (197)
..+.|+.+|.++++.+. +..++|..|. ++ ...+..|..++...|-.+.+
T Consensus 272 ~a~yG~~eV~~Al~~GA-------------------------VetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~i 326 (358)
T 3agj_B 272 TVAYTPGEVLAVARMGA-------------------------VDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVII 326 (358)
T ss_dssp GEEESHHHHHHHHHHTC-------------------------EEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEECHHHHHHHHHhCC-------------------------ceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEE
Confidence 68899999999999999 7888887542 22 34577888889999999999
Q ss_pred EcCCCCCchhhhhhh
Q 029226 139 VKDKKGGSLRLGELV 153 (197)
Q Consensus 139 V~skk~~Sl~LG~a~ 153 (197)
|++.. .-|+-+
T Consensus 327 vs~~~----~~G~qL 337 (358)
T 3agj_B 327 IPGDS----PAGERL 337 (358)
T ss_dssp ECSSS----HHHHHH
T ss_pred ECCCC----cchhhh
Confidence 99988 555443
No 45
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=47.12 E-value=31 Score=30.91 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=43.7
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC----Ch--h-hHHHhHHHHHHhcCCCEE
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC----SP--R-WLIKHLPGLALSRNVPVI 137 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv----~P--~-~Li~HLP~Lc~~rnIP~v 137 (197)
..+.|..+|.++++.+. +..++|..+. ++ + .++ .|...++..|--+.
T Consensus 291 ~a~YG~~eV~~Ale~GA-------------------------VetLLI~d~l~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ 344 (390)
T 3mca_B 291 KAWYGPNHVLKAFELGA-------------------------IGELLISDSLFRSSDIATRKKWV-SLVEGVKEINCPVY 344 (390)
T ss_dssp SEEESHHHHHHHHHTTC-------------------------BSSCEEEETTCCCSCHHHHHHHH-HHHHHHHHTTCCEE
T ss_pred cEEECHHHHHHHHHcCC-------------------------CeEEEEecccccCCChhHHHHHH-HHHHHHHhcCCEEE
Confidence 68999999999999988 5666666332 12 1 233 67788899999999
Q ss_pred EEcCCCCCchhhhhhh
Q 029226 138 FVKDKKGGSLRLGELV 153 (197)
Q Consensus 138 ~V~skk~~Sl~LG~a~ 153 (197)
+|++.- .-|+-+
T Consensus 345 ivs~~~----~~G~qL 356 (390)
T 3mca_B 345 IFSSLH----ESGKQL 356 (390)
T ss_dssp EECTTS----HHHHHH
T ss_pred EECCCC----Cchhhh
Confidence 999887 445544
No 46
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=42.39 E-value=27 Score=25.96 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=26.0
Q ss_pred eEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCC
Q 029226 107 LQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDK 142 (197)
Q Consensus 107 ~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~sk 142 (197)
+.+|+++.+..|..-+ -.+|++++||++.++..
T Consensus 75 ~~~iIlt~g~~~~~~i---~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 75 VRCLILTGNLEPVQLV---LTKAEERGVPVILTGHD 107 (139)
T ss_dssp EEEEEEETTCCCCHHH---HHHHHHHTCCEEECSSC
T ss_pred CcEEEEcCCCCCCHHH---HHHHHHCCCeEEEECCC
Confidence 6799999887775433 38899999999998754
No 47
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=36.60 E-value=8.3 Score=29.69 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC
Q 029226 37 LLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC 116 (197)
Q Consensus 37 ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv 116 (197)
.|+.+.+.|+..+ . .-|+..|...-|..|+|.+.+.+--.. ..+|+-|.|-
T Consensus 4 ~L~~L~~~I~~Rk-~---~~pe~SYT~~L~~kG~~kI~kKvgEEA-------------------------~E~iiAak~~ 54 (115)
T 1yvw_A 4 AFKLLYKTIEERK-G---SPLPESYTNYLFSKGEDKILKKIGEEC-------------------------AEVIIACKNN 54 (115)
T ss_dssp CHHHHHHHHHHHH-H---SCCTTSHHHHHHHHCHHHHHHHHHHHH-------------------------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-c---CCCCCcHHHHHHHCcHHHHHHHHHHHH-------------------------HHHHHHHhcC
Confidence 3556666665444 2 237888998999999999988774333 3455555666
Q ss_pred Chhh-------HHHhHHHHHHhcCCCEEEE
Q 029226 117 SPRW-------LIKHLPGLALSRNVPVIFV 139 (197)
Q Consensus 117 ~P~~-------Li~HLP~Lc~~rnIP~v~V 139 (197)
|+.. |+=|+-.|+..+||+.--|
T Consensus 55 d~~~l~~E~ADLlYHllVlL~~~gv~l~dV 84 (115)
T 1yvw_A 55 DKEEVVKEMVDVFYHCFVLLAEKNIALEDV 84 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 6644 6679999999999965433
No 48
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=33.92 E-value=12 Score=28.73 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCC
Q 029226 38 LKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCS 117 (197)
Q Consensus 38 l~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~ 117 (197)
|+.+.+.|+..+ ..-|+..|...-|..|++.+.+.+--.. ..+|+-|.|-|
T Consensus 6 L~~L~~~I~~Rk----~~~pe~SYT~~L~~kG~~kI~kKvgEEA-------------------------~E~iiAak~~d 56 (116)
T 2a7w_A 6 LKNIADTLEARR----EAAPQSSYVASLFHKGEDAILKKVAEEA-------------------------AETLMASKDKD 56 (116)
T ss_dssp HHHHHHHHHHGG----GSCTTTCHHHHHHHHCHHHHHHHHHHHH-------------------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHH----hCCCCCcHHHHHHHCCHHHHHHHHHHHH-------------------------HHHHHHHHhCC
Confidence 566666666444 2347888998999999999988774333 34555556656
Q ss_pred hhh-------HHHhHHHHHHhcCCCEEEE
Q 029226 118 PRW-------LIKHLPGLALSRNVPVIFV 139 (197)
Q Consensus 118 P~~-------Li~HLP~Lc~~rnIP~v~V 139 (197)
+.. |+=|+-.|+..+||++--|
T Consensus 57 ~~el~~E~ADLlYHllVlL~~~gv~l~dV 85 (116)
T 2a7w_A 57 KLHLVREVADLWFHTMVLLTYHGLRPEDV 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 543 6679999999999965444
No 49
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=33.81 E-value=3.9 Score=30.41 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC
Q 029226 37 LLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC 116 (197)
Q Consensus 37 ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv 116 (197)
.|+.+.+.|+..+. + -|+..|...-|..|+|.+.|.+--.. ..+|+-|.|-
T Consensus 9 ~l~~L~~~I~~Rk~-~---~pe~SYT~~L~~~G~~ki~kKvgEEA-------------------------~E~iiAak~~ 59 (93)
T 1y6x_A 9 TFEDLFAELGDRAR-T---RPADSTTVAALDGGVHALGKKLLEEA-------------------------GEVWLAAEHE 59 (93)
T ss_dssp SHHHHHHHHHHHHH-H---CCTTCHHHHHHHTCHHHHHHHHHHHH-------------------------HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-C---CCCCcHHHHHHHCcHHHHHHHHHHHH-------------------------HHHHHHHHhC
Confidence 35555666654442 2 36778888999999999988774333 2444444555
Q ss_pred Chhh-------HHHhHHHHHHhcCCCE
Q 029226 117 SPRW-------LIKHLPGLALSRNVPV 136 (197)
Q Consensus 117 ~P~~-------Li~HLP~Lc~~rnIP~ 136 (197)
++.. |+=|+-.|+..+||+.
T Consensus 60 ~~~~l~~E~ADLlYHllVlL~~~gv~l 86 (93)
T 1y6x_A 60 SNDALAEEISQLLYWTQVLMISRGLSL 86 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5533 6679999999999863
No 50
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=28.40 E-value=10 Score=28.40 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhhcCCC-CCchhhhcccccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCC
Q 029226 38 LKLIQREIVSARSLHGDS-LPEKLWFKQRFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADC 116 (197)
Q Consensus 38 l~~i~~~ie~ak~~~~~~-lp~k~~~k~~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv 116 (197)
|+.+.+.|+..+ .. -|+..|...-|..|+|.+.|.+--.. ..+|+-|.|-
T Consensus 6 L~~L~~~I~~Rk----~~~~pe~SYT~~L~~kG~~kI~kKvgEEA-------------------------~E~iiAak~~ 56 (98)
T 1yxb_A 6 FEELFTELQHKA----ANGDPATSRTAELVDKGVHAIGKKVVEEA-------------------------AEVWMAAEYE 56 (98)
T ss_dssp HHHHHHHHHHHT----CC----CCSSCCHHHHCHHHHHHHHHHHH-------------------------HHHHHHHHHS
T ss_pred HHHHHHHHHHHH----hCCCCCCcHHHHHHHCcHHHHHHHHHHHH-------------------------HHHHHHHHhC
Confidence 555666665443 22 47888888899999999988774333 2444444555
Q ss_pred Chh-------hHHHhHHHHHHhcCCCE
Q 029226 117 SPR-------WLIKHLPGLALSRNVPV 136 (197)
Q Consensus 117 ~P~-------~Li~HLP~Lc~~rnIP~ 136 (197)
|+. +|+=|+-.|+..+||+.
T Consensus 57 d~~~l~~E~ADLlYHllVlL~~~gv~l 83 (98)
T 1yxb_A 57 GKDAAAEEISQLLYHVQVMMVARGISL 83 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 553 36679999999999863
No 51
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=25.50 E-value=1.6e+02 Score=24.85 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=41.3
Q ss_pred cccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCC
Q 029226 65 RFSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKG 144 (197)
Q Consensus 65 ~l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~ 144 (197)
-++.|.|-|..+|+.+.. +..||+..+.... ..+..+++..++|+..|+..
T Consensus 41 f~veG~~~V~eal~~~~~------------------------i~~l~~~~~~~~~---~~~~~l~~~~~~~v~~v~~~-- 91 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWP------------------------VRTLLYDGQRELS---KWARELLRTVRTEQIAMAPD-- 91 (287)
T ss_dssp EEEESHHHHHHHHHTTCC------------------------EEEEEEESSCCCC---HHHHHHHHHSCSEEEEECHH--
T ss_pred EEEEeHHHHHHHHhCCCC------------------------eEEEEEecCcccc---hhHHHHHHHcCCcEEEeCHH--
Confidence 478899999999987642 6788888765431 12333344345888888654
Q ss_pred CchhhhhhhCCc
Q 029226 145 GSLRLGELVKLK 156 (197)
Q Consensus 145 ~Sl~LG~a~Gik 156 (197)
.|.++.+..
T Consensus 92 ---~l~~ls~~~ 100 (287)
T 1x7o_A 92 ---LLMELGEKN 100 (287)
T ss_dssp ---HHTTSSCSS
T ss_pred ---HHHHHhCCC
Confidence 788888776
No 52
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.39 E-value=82 Score=26.49 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.0
Q ss_pred CChhhHHHhHHHHHHhcCCCEEEEcCC--CCCchhhhhhhCCceeEEEEEeecCcchHHHH
Q 029226 116 CSPRWLIKHLPGLALSRNVPVIFVKDK--KGGSLRLGELVKLKTAIAVGIKAKGNIINQLM 174 (197)
Q Consensus 116 v~P~~Li~HLP~Lc~~rnIP~v~V~sk--k~~Sl~LG~a~Gikta~Aigik~~~~~~nk~~ 174 (197)
.++..++.|.-.+|+.-++|++.-.-. .|-.+....+..+ ..+|||....++.++.
T Consensus 106 ~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L---nIvgiKdssgd~~~~~ 163 (288)
T 2nuw_A 106 LPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL---PVKGIKDTNQDLAHSL 163 (288)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT---TEEEEEECCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc---EEEEEEeCCCCHHHHH
Confidence 366889999999999999997764322 2333333333444 6789998887765443
No 53
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=24.90 E-value=2e+02 Score=20.73 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=49.6
Q ss_pred CccccccccchhHHHHHHHHHHHHHHhhhhcCCCCCchhhhcccccccHHHHHH---------HHHhcCccCCCCCCCCC
Q 029226 22 VPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWFKQRFSIGVNEVTR---------VLERMAPRANMGISPQQ 92 (197)
Q Consensus 22 ~~~~~~~~~ge~l~~ll~~i~~~ie~ak~~~~~~lp~k~~~k~~l~iGVNeVTK---------aLEr~~~~~~~~~~~~~ 92 (197)
..+.+--..|....+++..+.+.+...+ |. +. -+..|+|+... .+++.-...
T Consensus 39 ~~v~n~g~~G~~~~~~~~~~~~~~~~~~-------pd-~v---vi~~G~ND~~~~~~~~~~~~~~~~~i~~~-------- 99 (185)
T 3hp4_A 39 IVLINASISGETSGGALRRLDALLEQYE-------PT-HV---LIELGANDGLRGFPVKKMQTNLTALVKKS-------- 99 (185)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHC-------CS-EE---EEECCHHHHHTTCCHHHHHHHHHHHHHHH--------
T ss_pred EEEEECCcCCccHHHHHHHHHHHHhhcC-------CC-EE---EEEeecccCCCCcCHHHHHHHHHHHHHHH--------
Confidence 3444555678888888888777664322 22 22 37788888622 222211000
Q ss_pred CccccCCCCCCCCceEEEEEccC----CCh---hhHHHhHHHHHHhcCCCEEEEc
Q 029226 93 PHILCGNSKVPSVQLQVILLAAD----CSP---RWLIKHLPGLALSRNVPVIFVK 140 (197)
Q Consensus 93 ~~~~~~~~~~p~~~~qlVlIAaD----v~P---~~Li~HLP~Lc~~rnIP~v~V~ 140 (197)
.... .++|++..- ..+ ..+-.-+..+|++.+++++-+.
T Consensus 100 -~~~~---------~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 100 -QAAN---------AMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp -HHTT---------CEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred -HHcC---------CeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 0000 356666421 111 2456778899999999877543
No 54
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.96 E-value=1.7e+02 Score=19.80 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccC---CChhhHHHhHHHHHHhcCCCEEEEcCC
Q 029226 66 FSIGVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAAD---CSPRWLIKHLPGLALSRNVPVIFVKDK 142 (197)
Q Consensus 66 l~iGVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaD---v~P~~Li~HLP~Lc~~rnIP~v~V~sk 142 (197)
.+....+..+.++... ..+||+..+ .+-..++..|-......++|++++.+.
T Consensus 35 ~~~~~~~a~~~l~~~~-------------------------~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 35 MVHSAAQALEQVARRP-------------------------YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp EECSHHHHHHHHHHSC-------------------------CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTT
T ss_pred EECCHHHHHHHHHhCC-------------------------CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecC
Confidence 4456677777787765 368888744 344455555544334678999999876
Q ss_pred C
Q 029226 143 K 143 (197)
Q Consensus 143 k 143 (197)
.
T Consensus 90 ~ 90 (140)
T 3grc_A 90 A 90 (140)
T ss_dssp H
T ss_pred C
Confidence 5
No 55
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=23.91 E-value=1.5e+02 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=36.3
Q ss_pred cHHHHHHHHHhcCccCCCCCCCCCCccccCCCCCCCCceEEEEEccC---CCh-hhHHHhHHHHHHhcCCCEEE
Q 029226 69 GVNEVTRVLERMAPRANMGISPQQPHILCGNSKVPSVQLQVILLAAD---CSP-RWLIKHLPGLALSRNVPVIF 138 (197)
Q Consensus 69 GVNeVTKaLEr~~~~~~~~~~~~~~~~~~~~~~~p~~~~qlVlIAaD---v~P-~~Li~HLP~Lc~~rnIP~v~ 138 (197)
|-.++...|..++ +++||--.| -.| ..=..-|-.+|-.+||||..
T Consensus 70 G~p~I~d~I~~ge-------------------------IdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 70 GDQQVGALISEGK-------------------------IDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp HHHHHHHHHHTTC-------------------------CCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred CCchHHHHHHCCC-------------------------ccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 6678999999988 788888876 555 33466799999999999875
No 56
>2dzq_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-066, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.74 E-value=66 Score=24.22 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=26.2
Q ss_pred CCCCchhhhcccccccHHHHHHHHHhcCc
Q 029226 54 DSLPEKLWFKQRFSIGVNEVTRVLERMAP 82 (197)
Q Consensus 54 ~~lp~k~~~k~~l~iGVNeVTKaLEr~~~ 82 (197)
.+||+.+.+|+--..|+....+.|+....
T Consensus 47 ~GlPegI~FR~P~~ygi~~Le~IL~~~~~ 75 (99)
T 2dzq_A 47 VGLPEGISLRRPNCFGIAKLRKILEASNS 75 (99)
T ss_dssp ESCCTTCCSCCTTTSCHHHHHHHHHTTTT
T ss_pred ecCCCCCcccCcCcccHHHHHHHHhccCC
Confidence 37899999999999999999999998763
No 57
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=23.40 E-value=92 Score=26.51 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=27.8
Q ss_pred eEEEEEccCCChhhHHHhHHHHHHhc---CCCEEEEcCCC
Q 029226 107 LQVILLAADCSPRWLIKHLPGLALSR---NVPVIFVKDKK 143 (197)
Q Consensus 107 ~qlVlIAaDv~P~~Li~HLP~Lc~~r---nIP~v~V~skk 143 (197)
+.+||.|.| ++ .+-.++-.+|.++ ++|+-.+.+..
T Consensus 107 adlViaat~-d~-~~n~~I~~~Ar~~f~~~i~VNvvd~pe 144 (274)
T 1kyq_A 107 WYIIMTCIP-DH-PESARIYHLCKERFGKQQLVNVADKPD 144 (274)
T ss_dssp EEEEEECCS-CH-HHHHHHHHHHHHHHCTTSEEEETTCGG
T ss_pred eEEEEEcCC-Ch-HHHHHHHHHHHHhcCCCcEEEECCCcc
Confidence 578888887 44 4677889999999 99888887664
No 58
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.16 E-value=2e+02 Score=20.10 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEEEEccCCChhhHHHhHHHHH-HhcCCCEEEEcCCC
Q 029226 107 LQVILLAADCSPRWLIKHLPGLA-LSRNVPVIFVKDKK 143 (197)
Q Consensus 107 ~qlVlIAaDv~P~~Li~HLP~Lc-~~rnIP~v~V~skk 143 (197)
+.+..+--|-||. ...-+-.+. -.+.||.+++.+..
T Consensus 29 i~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~Dg~ 65 (92)
T 2lqo_A 29 IAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFADGS 65 (92)
T ss_dssp CCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEETTSC
T ss_pred CceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEeCCE
Confidence 4455666666664 333343333 24668888886654
No 59
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=20.59 E-value=1.6e+02 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=24.4
Q ss_pred eEEEEEccCCCh-----hhHHHhHHHHHHhcCCCEEEEcCCCC
Q 029226 107 LQVILLAADCSP-----RWLIKHLPGLALSRNVPVIFVKDKKG 144 (197)
Q Consensus 107 ~qlVlIAaDv~P-----~~Li~HLP~Lc~~rnIP~v~V~skk~ 144 (197)
..+||++.|.-. ..+...+-.| ++.++|+.+|+.+-.
T Consensus 33 ~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 33 ADAIALIGNLMPKAAKSRDYAAFFRIL-SEAHLPTAYVPGPQD 74 (228)
T ss_dssp CSEEEEESCSSCTTCCHHHHHHHHHHH-GGGCSCEEEECCTTS
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEECCCCC
Confidence 469999999742 2222333344 346899999998873
No 60
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.43 E-value=73 Score=26.26 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred eEEEEEccCCChhhHHHhHHHHHHhcCCCEEEEcCCCCCchhhhhhhCCceeEEEEEeecC--cchHHHHH
Q 029226 107 LQVILLAADCSPRWLIKHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKG--NIINQLMD 175 (197)
Q Consensus 107 ~qlVlIAaDv~P~~Li~HLP~Lc~~rnIP~v~V~skk~~Sl~LG~a~Gikta~Aigik~~~--~~~nk~~~ 175 (197)
+.+||.|.|.. .+-..+-.+|+ ++||+-.+++...++--+...+.- ..+.|||...+ +.+.+.+.
T Consensus 92 adLVIaAT~d~--~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~r-g~l~iaIST~G~sP~la~~iR 158 (223)
T 3dfz_A 92 VFFIVVATNDQ--AVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSR-GRLSLAISTDGASPLLTKRIK 158 (223)
T ss_dssp CSEEEECCCCT--HHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEE-TTEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEECCCCH--HHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEe-CCEEEEEECCCCCcHHHHHHH
Confidence 46888887754 46777888888 999999998876555444443332 24667776643 44444443
Done!