Query 029229
Match_columns 197
No_of_seqs 152 out of 511
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 97.8 8.8E-06 3E-10 58.8 3.0 76 2-77 4-91 (101)
2 2did_A Tripartite motif protei 86.7 0.64 2.2E-05 29.8 3.4 39 3-47 10-49 (53)
3 1fre_A Nuclear factor XNF7; zi 86.4 0.37 1.3E-05 29.5 2.0 30 3-32 5-35 (42)
4 2ffw_A Midline-1; B-BOX, ring 86.2 0.42 1.4E-05 33.8 2.5 40 2-41 31-74 (78)
5 2yrg_A Tripartite motif-contai 86.0 0.61 2.1E-05 31.0 3.1 39 3-47 16-55 (59)
6 2egm_A Tripartite motif-contai 81.7 0.53 1.8E-05 31.2 1.3 30 3-32 20-50 (57)
7 3ddt_A E3 ubiquitin-protein li 81.7 1.1 3.6E-05 28.3 2.7 31 3-33 8-40 (48)
8 2yvr_A Transcription intermedi 76.1 2.1 7E-05 27.0 2.8 38 3-46 8-46 (50)
9 2d8u_A Ubiquitin ligase TRIM63 75.4 2.3 8E-05 27.8 3.0 44 2-51 9-54 (64)
10 2jun_A Midline-1; B-BOX, TRIM, 75.4 1.9 6.5E-05 30.4 2.8 32 2-33 60-93 (101)
11 2csv_A Tripartite motif protei 73.5 2.3 7.9E-05 28.8 2.7 42 3-50 20-61 (72)
12 2dja_A Midline-2; tripartite m 71.9 3.2 0.00011 28.6 3.1 43 3-51 20-64 (84)
13 4hc9_A Trans-acting T-cell-spe 71.1 2.2 7.5E-05 32.7 2.4 70 2-75 6-89 (115)
14 2d8v_A Zinc finger FYVE domain 54.0 9.7 0.00033 27.3 2.9 44 2-46 9-53 (67)
15 1f62_A Transcription factor WS 43.9 20 0.00068 22.6 3.0 45 3-51 2-49 (51)
16 2yqq_A Zinc finger HIT domain- 43.7 13 0.00045 25.4 2.2 26 1-26 12-38 (56)
17 2ffw_A Midline-1; B-BOX, ring 43.5 6.6 0.00023 27.5 0.7 35 43-77 30-64 (78)
18 1z60_A TFIIH basal transcripti 43.0 7.1 0.00024 26.9 0.8 31 3-33 17-51 (59)
19 2lri_C Autoimmune regulator; Z 34.2 24 0.00082 24.2 2.3 42 3-51 14-58 (66)
20 2d8v_A Zinc finger FYVE domain 31.9 32 0.0011 24.6 2.7 15 117-131 43-57 (67)
21 1zbd_B Rabphilin-3A; G protein 30.0 21 0.0007 27.8 1.6 45 2-51 56-106 (134)
22 2e6s_A E3 ubiquitin-protein li 29.7 30 0.001 24.4 2.3 40 1-51 10-49 (77)
23 2csz_A Synaptotagmin-like prot 29.1 13 0.00043 27.1 0.2 42 2-52 26-73 (76)
24 2zet_C Melanophilin; complex, 27.8 21 0.00072 28.3 1.3 42 2-51 69-116 (153)
25 1nvp_C Transcription initiatio 27.0 19 0.00066 26.2 0.9 9 116-124 28-36 (76)
26 1nh2_C Transcription initiatio 23.9 25 0.00086 25.8 1.0 10 115-124 29-38 (79)
27 2ehe_A Four and A half LIM dom 22.8 39 0.0013 22.5 1.7 63 13-77 4-75 (82)
28 2yt5_A Metal-response element- 22.6 35 0.0012 22.4 1.5 27 3-32 8-35 (66)
29 1mm2_A MI2-beta; PHD, zinc fin 22.4 1E+02 0.0034 20.3 3.7 23 3-32 11-33 (61)
30 3ign_A Diguanylate cyclase; gg 21.6 33 0.0011 24.9 1.3 17 117-133 160-176 (177)
31 2yql_A PHD finger protein 21A; 21.3 46 0.0016 21.5 1.8 23 3-32 11-33 (56)
32 1v6g_A Actin binding LIM prote 20.8 29 0.00099 23.2 0.7 64 12-78 3-75 (81)
33 1x63_A Skeletal muscle LIM-pro 20.6 24 0.00082 23.5 0.3 61 13-75 4-73 (82)
34 2e6r_A Jumonji/ARID domain-con 20.3 52 0.0018 23.6 2.1 26 3-32 18-43 (92)
35 2egq_A FHL1 protein; LIM domai 20.1 20 0.00069 23.6 -0.2 58 13-73 4-74 (77)
36 3asl_A E3 ubiquitin-protein li 20.1 49 0.0017 22.6 1.8 23 2-27 3-25 (70)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.83 E-value=8.8e-06 Score=58.78 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCCCCCC----CCceEEeccCccccCchhccccccCCCCCCcceee-ecc------ccccCCCCCccCCCCCCCccccCc
Q 029229 2 KKCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHSRT-LLC------HVCQSLTPWNGSGPKLGPTISVCN 70 (197)
Q Consensus 2 ~~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~Rv-pLC------~~C~s~~A~~~sG~C~~daasLC~ 70 (197)
..|.+|. .+|+++|..+.+.||..|...+|..++.+++|..+ ++- ..|..++...+...|..+...+|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~ 83 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA 83 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence 3699997 37999999999999999999999888888899876 332 247766533344579999999999
Q ss_pred cccc-CCC
Q 029229 71 VCVG-NGS 77 (197)
Q Consensus 71 sCd~-~~h 77 (197)
.|.. ..|
T Consensus 84 ~C~~~~~H 91 (101)
T 2jun_A 84 LCKLVGRH 91 (101)
T ss_dssp HHHHHTTT
T ss_pred hcCCCCCc
Confidence 9986 555
No 2
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=86.70 E-value=0.64 Score=29.84 Aligned_cols=39 Identities=26% Similarity=0.528 Sum_probs=29.1
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccccCCCCCCcceeeeccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (197)
+|..-+.+-.|||..|...+|..|-. .-|. .|..++|-+
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~e 49 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSG 49 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCC
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHH
Confidence 45555567789999999999999986 5563 477676654
No 3
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=86.40 E-value=0.37 Score=29.49 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=23.6
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-cccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHG 32 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHs 32 (197)
+|..-+.+-.|||..|.+.+|..|-. .-|.
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCCC
Confidence 45555567789999999999999976 4553
No 4
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=86.22 E-value=0.42 Score=33.79 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=33.8
Q ss_pred CCCCCCC----CCceEEeccCccccCchhccccccCCCCCCcce
Q 029229 2 KKCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHS 41 (197)
Q Consensus 2 ~~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~ 41 (197)
..|++|. .+|+..|....+.||..|=...|...+.+++|.
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence 3799996 468999999999999999877797777777886
No 5
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.02 E-value=0.61 Score=31.04 Aligned_cols=39 Identities=26% Similarity=0.672 Sum_probs=28.9
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccccCCCCCCcceeeeccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (197)
+|..-+.+-.|||..|.+.+|..|-. .-|. .|..++|-.
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~e 55 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSG 55 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCS
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHH
Confidence 45555567789999999999999986 5553 366666643
No 6
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.70 E-value=0.53 Score=31.24 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=23.6
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-cccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHG 32 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHs 32 (197)
+|..-+.+-.|||..|.+.+|..|-. .-|.
T Consensus 20 ~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQEALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTCCBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhCceeeEEcCCCCcEEecccCCCCCCC
Confidence 45555567789999999999999986 4553
No 7
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=81.68 E-value=1.1 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCCCCC-CCceEEeccCccccCchhc-cccccC
Q 029229 3 KCELCG-SPAKMFCESDQASLCWDCD-AKVHGA 33 (197)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CD-a~VHsA 33 (197)
+|..=. .+-.|||..|...+|..|- ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 344444 4567999999999999996 445744
No 8
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=76.06 E-value=2.1 Score=27.00 Aligned_cols=38 Identities=32% Similarity=0.680 Sum_probs=28.9
Q ss_pred CCCCC-CCCceEEeccCccccCchhccccccCCCCCCcceeeecc
Q 029229 3 KCELC-GSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLC 46 (197)
Q Consensus 3 ~Cd~C-~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (197)
.|..- +.+-.|||..|...+|..|-..-|. .|.-++|-
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 56666 3677899999999999999876563 46666654
No 9
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=75.43 E-value=2.3 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=33.3
Q ss_pred CCCCCC-CCCceEEeccCccccCchhcc-ccccCCCCCCcceeeeccccccC
Q 029229 2 KKCELC-GSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 2 ~~Cd~C-~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~s 51 (197)
..|..- +.+-.|||..|...+|..|-. .-|. .|.-++|-.+.+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 356666 367789999999999999975 4663 4877887766554
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=75.40 E-value=1.9 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=25.9
Q ss_pred CCCCCCC-CCceEEeccCccccCchhcc-ccccC
Q 029229 2 KKCELCG-SPAKMFCESDQASLCWDCDA-KVHGA 33 (197)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsA 33 (197)
+.|...+ .+..+||..|...+|..|.. .-|..
T Consensus 60 ~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~ 93 (101)
T 2jun_A 60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRD 93 (101)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSS
T ss_pred CcCcCcCCCcceEECCCCCCccchhcCCCCCcCC
Confidence 3577775 77899999999999999986 66743
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.54 E-value=2.3 Score=28.79 Aligned_cols=42 Identities=31% Similarity=0.687 Sum_probs=30.8
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccCCCCCCcceeeecccccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQ 50 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~ 50 (197)
.|..-+.+-.|||..|...+|..|-..-|. .|.-++|-...+
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~ 61 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKA 61 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHH
T ss_pred cCcccCCceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHH
Confidence 455545677899999999999999775563 477777765443
No 12
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=71.90 E-value=3.2 Score=28.62 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCCCCC-CCceEEeccCccccCchhcc-ccccCCCCCCcceeeeccccccC
Q 029229 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~s 51 (197)
.|..-. .+-.|||..|...+|..|-. .-|. .|.-++|-.+.+.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~ 64 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 64 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence 566664 67789999999999999987 5563 4777777655443
No 13
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=71.09 E-value=2.2 Score=32.66 Aligned_cols=70 Identities=27% Similarity=0.553 Sum_probs=42.8
Q ss_pred CCCCCCC-CCceEEeccC-ccccCchhc--cccccCCCCCCccee--------eeccccccC--CCCCccCCCCCCCccc
Q 029229 2 KKCELCG-SPAKMFCESD-QASLCWDCD--AKVHGANFLVANHSR--------TLLCHVCQS--LTPWNGSGPKLGPTIS 67 (197)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD-~A~LC~~CD--a~VHsAN~La~rH~R--------vpLC~~C~s--~~A~~~sG~C~~daas 67 (197)
+.|..|+ ....+|=+.+ ...||..|. .+.|..|..+.+..+ ...|..|.. .|-|.- ......
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr----~~~g~~ 81 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRR----NANGDP 81 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEE----CTTSCE
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEE----CCCCCC
Confidence 5799999 3333333333 358999999 566777764433221 235888885 334552 233468
Q ss_pred cCcccccC
Q 029229 68 VCNVCVGN 75 (197)
Q Consensus 68 LC~sCd~~ 75 (197)
||..|-..
T Consensus 82 lCNaCgl~ 89 (115)
T 4hc9_A 82 VCNACGLY 89 (115)
T ss_dssp ECHHHHHH
T ss_pred cchHHHHH
Confidence 99999654
No 14
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.04 E-value=9.7 Score=27.30 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=37.2
Q ss_pred CCCCCCCCCceEEeccC-ccccCchhccccccCCCCCCcceeeecc
Q 029229 2 KKCELCGSPAKMFCESD-QASLCWDCDAKVHGANFLVANHSRTLLC 46 (197)
Q Consensus 2 ~~Cd~C~apA~vyC~aD-~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (197)
+.|-+|..-|+|.|... .-..|.+|=+..|. .+-.+.|+.++.-
T Consensus 9 pWC~ICneDAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 9 PWCCICNEDATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYH 53 (67)
T ss_dssp SSCTTTCSCCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCC
T ss_pred CeeEEeCCCCeEEecCCCCceehHHHHHHHcc-chhhhccceeecc
Confidence 57999997799999988 56889999999994 5667889988863
No 15
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.94 E-value=20 Score=22.62 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=24.2
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccC--C-CCCCcceeeeccccccC
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGA--N-FLVANHSRTLLCHVCQS 51 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsA--N-~La~rH~RvpLC~~C~s 51 (197)
.|.+|+... ..+...+|..|+...|.. + +|...=...|+|..|..
T Consensus 2 ~C~vC~~~~----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477787322 134567788888877742 1 22222223455655543
No 16
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.73 E-value=13 Score=25.40 Aligned_cols=26 Identities=23% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCCCCCCCCCceEEeccCccccCc-hh
Q 029229 1 MKKCELCGSPAKMFCESDQASLCW-DC 26 (197)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~A~LC~-~C 26 (197)
|.+|.+|+.++.+-|....+..|. .|
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCCEESSHHH
T ss_pred CCccCcCcCCCeeeCCCCCCCeeCHHH
Confidence 568999999999999999999987 66
No 17
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=43.54 E-value=6.6 Score=27.48 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=25.1
Q ss_pred eeccccccCCCCCccCCCCCCCccccCcccccCCC
Q 029229 43 TLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNGS 77 (197)
Q Consensus 43 vpLC~~C~s~~A~~~sG~C~~daasLC~sCd~~~h 77 (197)
..+|..|...++..+...|+.+.++||..|....|
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H 64 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 64 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhc
Confidence 46799998633223334699999999999987644
No 18
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.01 E-value=7.1 Score=26.90 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=24.4
Q ss_pred CCCCCC-CC--c-eEEeccCccccCchhccccccC
Q 029229 3 KCELCG-SP--A-KMFCESDQASLCWDCDAKVHGA 33 (197)
Q Consensus 3 ~Cd~C~-ap--A-~vyC~aD~A~LC~~CDa~VHsA 33 (197)
.|-.|+ .- . ++.|......+|..||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 477887 32 2 4669999999999999999943
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=34.18 E-value=24 Score=24.18 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=25.2
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc--CC-CCCCcceeeeccccccC
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--AN-FLVANHSRTLLCHVCQS 51 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN-~La~rH~RvpLC~~C~s 51 (197)
.|.+|+.. +...+|..|++..|. .+ +|...=...|+|..|..
T Consensus 14 ~C~vC~~~-------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDG-------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCC-------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCCCC-------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 57888722 235667788888884 22 23333345677777764
No 20
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=31.89 E-value=32 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=10.6
Q ss_pred CCCCCceeeCCCCCC
Q 029229 117 EDEENQVVPWSSTPP 131 (197)
Q Consensus 117 ~~~~nqvvpws~~~~ 131 (197)
++.+-|.|||..++.
T Consensus 43 d~r~Hk~v~y~~~~k 57 (67)
T 2d8v_A 43 DLKEHQTSPYHPRRP 57 (67)
T ss_dssp STTTCCEECCCCSSS
T ss_pred hhhccceeeccCCCC
Confidence 345678999977553
No 21
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.04 E-value=21 Score=27.77 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=35.3
Q ss_pred CCCCCCC-CC-----ceEEeccCccccCchhccccccCCCCCCcceeeeccccccC
Q 029229 2 KKCELCG-SP-----AKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 2 ~~Cd~C~-ap-----A~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (197)
..|..|. .- ....|....-..|..|...+... +....|+|.+|..
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~-----~~~~~W~C~vC~k 106 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-----RPHPVWLCKICLE 106 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-----SSSCCEEEHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCC-----CCccceechhhHH
Confidence 4688998 22 35789999999999999887532 5678999999984
No 22
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.69 E-value=30 Score=24.35 Aligned_cols=40 Identities=33% Similarity=0.733 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceEEeccCccccCchhccccccCCCCCCcceeeeccccccC
Q 029229 1 MKKCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (197)
++.|..|+....++|... .|..|...-+ -..+++|+.|..
T Consensus 10 ~~~c~~C~~~~~w~C~~c---~C~vC~~~~~--------~~~ll~CD~C~~ 49 (77)
T 2e6s_A 10 DTECDLCGGDPEKKCHSC---SCRVCGGKHE--------PNMQLLCDECNV 49 (77)
T ss_dssp CCCCTTTCSCSSSCCSSS---SCSSSCCCCC--------STTEEECSSSCC
T ss_pred CccChhhcCCCCeECCCC---CCcCcCCcCC--------CCCEEEcCCCCc
Confidence 356777774457777554 5666654322 124566776653
No 23
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.07 E-value=13 Score=27.10 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=24.2
Q ss_pred CCCCCCC-CCc-----eEEeccCccccCchhccccccCCCCCCcceeeeccccccCC
Q 029229 2 KKCELCG-SPA-----KMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQSL 52 (197)
Q Consensus 2 ~~Cd~C~-apA-----~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s~ 52 (197)
+.|-.|+ .-. ...|.......|..|.... .+ ..|+|-+|...
T Consensus 26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~-~~W~C~VC~k~ 73 (76)
T 2csz_A 26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SN-GTWRCKVCSGP 73 (76)
T ss_dssp CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------ST-TCEEEHHHHSS
T ss_pred cchhhhCccccccccCCCcCcccChhhcccccccC--------CC-CCEEEeeCchh
Confidence 4677777 332 3446666666666665443 12 57888877643
No 24
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.75 E-value=21 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.485 Sum_probs=32.0
Q ss_pred CCCCCCCC------CceEEeccCccccCchhccccccCCCCCCcceeeeccccccC
Q 029229 2 KKCELCGS------PAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 2 ~~Cd~C~a------pA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (197)
..|-.|.. .....|.......|..|...+ +....|+|.+|..
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~--------~~~~~W~C~vC~k 116 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH--------PEEQGWLCDPCHL 116 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC--------SSSSSCEEHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccccccc--------CCCCcEeeHHHHH
Confidence 36888884 346889999999999998422 2457899999984
No 25
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=27.05 E-value=19 Score=26.20 Aligned_cols=9 Identities=56% Similarity=0.350 Sum_probs=3.8
Q ss_pred CCCCCCcee
Q 029229 116 DEDEENQVV 124 (197)
Q Consensus 116 ~~~~~nqvv 124 (197)
..+.+|-||
T Consensus 28 ~~~~~n~vl 36 (76)
T 1nvp_C 28 LFDTENVVV 36 (76)
T ss_dssp --CCCCEEE
T ss_pred ccCCCcEEE
Confidence 334556554
No 26
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=23.88 E-value=25 Score=25.79 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=2.6
Q ss_pred CCCCCCCcee
Q 029229 115 EDEDEENQVV 124 (197)
Q Consensus 115 ~~~~~~nqvv 124 (197)
++...+|-|+
T Consensus 29 ~d~~~~n~vl 38 (79)
T 1nh2_C 29 EDGPDENLML 38 (79)
T ss_dssp -----CCEEE
T ss_pred cccccCcEEE
Confidence 3444455554
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=39 Score=22.48 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=37.9
Q ss_pred EEeccCc----cccCchhccccccCCCCC-----CcceeeeccccccCCCCCccCCCCCCCccccCcccccCCC
Q 029229 13 MFCESDQ----ASLCWDCDAKVHGANFLV-----ANHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNGS 77 (197)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La-----~rH~RvpLC~~C~s~~A~~~sG~C~~daasLC~sCd~~~h 77 (197)
+||..|- +..|..|...|.....++ ..|..-..|..|..+-... ..-..+...+|..|.....
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE--PFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSC--CEEEETTEEEETTTSSCCG
T ss_pred eechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCC--ccEeeCCEEECHHHHhhhc
Confidence 5677662 457999999998322222 2466666788887532110 1123466788888876543
No 28
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=22.59 E-value=35 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=15.2
Q ss_pred CCCCCCCC-ceEEeccCccccCchhcccccc
Q 029229 3 KCELCGSP-AKMFCESDQASLCWDCDAKVHG 32 (197)
Q Consensus 3 ~Cd~C~ap-A~vyC~aD~A~LC~~CDa~VHs 32 (197)
.|.+|+.. .. ......+|..|+...|.
T Consensus 8 ~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~ 35 (66)
T 2yt5_A 8 VCTICQEEYSE---APNEMVICDKCGQGYHQ 35 (66)
T ss_dssp CBSSSCCCCCB---TTBCEEECSSSCCEEET
T ss_pred CCCCCCCCCCC---CCCCEEECCCCChHHHh
Confidence 57777722 10 12344667788877774
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.44 E-value=1e+02 Score=20.33 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=14.7
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (197)
.|.+|+. .....+|..|+...|.
T Consensus 11 ~C~vC~~-------~g~ll~Cd~C~~~fH~ 33 (61)
T 1mm2_A 11 FCRVCKD-------GGELLCCDTCPSSYHI 33 (61)
T ss_dssp SCTTTCC-------CSSCBCCSSSCCCBCS
T ss_pred cCCCCCC-------CCCEEEcCCCCHHHcc
Confidence 4666663 1345677788877774
No 30
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=21.55 E-value=33 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=9.1
Q ss_pred CCCCCceeeCCCCCCCC
Q 029229 117 EDEENQVVPWSSTPPPQ 133 (197)
Q Consensus 117 ~~~~nqvvpws~~~~pp 133 (197)
..|-|+|+.|+.++|||
T Consensus 160 ~~g~n~~~~~~~~~~~~ 176 (177)
T 3ign_A 160 ESGRNKVVVSLEHHHHH 176 (177)
T ss_dssp HTTSSSEEECC------
T ss_pred HcCCCcEeecCCCCCCC
Confidence 45789999997766654
No 31
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.26 E-value=46 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=13.9
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (197)
.|.+|+.. ....+|..|+...|.
T Consensus 11 ~C~vC~~~-------g~ll~Cd~C~~~~H~ 33 (56)
T 2yql_A 11 FCSVCRKS-------GQLLMCDTCSRVYHL 33 (56)
T ss_dssp SCSSSCCS-------SCCEECSSSSCEECS
T ss_pred CCccCCCC-------CeEEEcCCCCcceEC
Confidence 56677632 245667777776664
No 32
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=29 Score=23.15 Aligned_cols=64 Identities=22% Similarity=0.414 Sum_probs=37.4
Q ss_pred eEEeccC----ccccCchhccccccCCCCCC----cceeeeccccccCCCC-CccCCCCCCCccccCcccccCCCC
Q 029229 12 KMFCESD----QASLCWDCDAKVHGANFLVA----NHSRTLLCHVCQSLTP-WNGSGPKLGPTISVCNVCVGNGSG 78 (197)
Q Consensus 12 ~vyC~aD----~A~LC~~CDa~VHsAN~La~----rH~RvpLC~~C~s~~A-~~~sG~C~~daasLC~sCd~~~h~ 78 (197)
.+||..| -+..|..|...|.. ..+.+ .|..-..|..|..+-. ... .-+.....+|..|...+-.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~--~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDR--VTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSC--EEEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCE--EEeCCCCEEChhhhcccCC
Confidence 4678887 25689999998873 22221 3555556777775321 110 1122334689999876543
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=24 Score=23.49 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred EEeccCc----cccCchhccccccCCCCCC-----cceeeeccccccCCCCCccCCCCCCCccccCcccccC
Q 029229 13 MFCESDQ----ASLCWDCDAKVHGANFLVA-----NHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGN 75 (197)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La~-----rH~RvpLC~~C~s~~A~~~sG~C~~daasLC~sCd~~ 75 (197)
+||..|- +..|..|...|..+..++. .|..-..|..|..+-... ..-..+...+|..|...
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 4 GSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG--SFFPKGEDFYCVTCHET 73 (82)
T ss_dssp CCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS--CEEEETTEEEEHHHHHH
T ss_pred cCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC--ccEeeCCEEECHHHHHH
Confidence 5676662 5689999999985443222 365555677777532110 01123556677777543
No 34
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=52 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=15.3
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (197)
.|.+|+... ..+...+|..|+...|.
T Consensus 18 ~C~vC~~~~----~~~~ll~CD~C~~~~H~ 43 (92)
T 2e6r_A 18 ICQVCSRGD----EDDKLLFCDGCDDNYHI 43 (92)
T ss_dssp CCSSSCCSG----GGGGCEECTTTCCEECS
T ss_pred CCccCCCcC----CCCCEEEcCCCCchhcc
Confidence 577777321 12345667778877774
No 35
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=20 Score=23.58 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=32.9
Q ss_pred EEeccCc----cccCchhcccccc---C-CCCC----CcceeeeccccccCC-CCCccCCCCCCCccccCcccc
Q 029229 13 MFCESDQ----ASLCWDCDAKVHG---A-NFLV----ANHSRTLLCHVCQSL-TPWNGSGPKLGPTISVCNVCV 73 (197)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHs---A-N~La----~rH~RvpLC~~C~s~-~A~~~sG~C~~daasLC~sCd 73 (197)
+||..|- +..|..|...|.. . ..+. ..|..-..|..|..+ .... .-..+...+|..|.
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~---f~~~~~~~yC~~cy 74 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKR---FVFHQEQVYCPDCA 74 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSC---CCEETTEECCHHHH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCc---cEeECCEEEChHHh
Confidence 4666662 5679999999984 2 2221 235555567777753 2111 11345566776664
No 36
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.10 E-value=49 Score=22.64 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=12.4
Q ss_pred CCCCCCCCCceEEeccCccccCchhc
Q 029229 2 KKCELCGSPAKMFCESDQASLCWDCD 27 (197)
Q Consensus 2 ~~Cd~C~apA~vyC~aD~A~LC~~CD 27 (197)
+-|..|...-.++|... .|..|.
T Consensus 3 ~~c~~c~~~~~w~C~~C---~C~~C~ 25 (70)
T 3asl_A 3 PSCKHCKDDVNRLCRVC---ACHLCG 25 (70)
T ss_dssp CSCTTTTTCTTSCCTTT---SBTTTC
T ss_pred cccccccCCCCeECCCC---CCcCCC
Confidence 35666664445666654 444443
Done!