Query 029229
Match_columns 197
No_of_seqs 152 out of 511
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dida1 g.43.1.1 (A:8-47) Trip 79.3 0.75 5.4E-05 27.6 2.9 29 3-31 3-32 (40)
2 d1frea_ g.43.1.1 (A:) Nuclear 76.5 0.63 4.6E-05 27.8 1.9 28 4-31 3-31 (39)
3 d2csva1 g.43.1.1 (A:8-66) Trip 71.3 1.3 9.8E-05 28.0 2.7 37 3-45 13-49 (59)
4 d2djaa1 g.43.1.1 (A:8-78) Midl 64.1 2.3 0.00017 27.2 2.7 43 3-51 13-57 (71)
5 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 59.2 2.1 0.00015 26.4 1.7 42 2-49 2-45 (51)
6 d1f62a_ g.50.1.2 (A:) Williams 45.1 6.7 0.00049 23.4 2.4 45 3-51 2-49 (51)
7 d1z60a1 g.49.1.2 (A:328-386) T 37.6 5.4 0.00039 26.3 1.1 31 3-33 17-51 (59)
8 d2d8va1 g.43.1.1 (A:8-61) Zinc 29.2 22 0.0016 22.9 3.1 44 1-45 1-45 (54)
9 d1y0ja1 g.39.1.1 (A:200-238) E 26.5 14 0.001 22.3 1.6 27 2-28 3-31 (39)
10 d2fc7a1 g.44.1.6 (A:8-76) Zinc 24.7 46 0.0033 21.2 4.2 28 3-30 16-51 (69)
11 d2dq5a1 g.43.1.1 (A:168-214) M 22.9 17 0.0012 21.7 1.5 28 4-31 8-37 (47)
No 1
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.28 E-value=0.75 Score=27.57 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=22.0
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccc
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDA-KVH 31 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (197)
+|..-+.+-.+||..|+..+|..|-. .-|
T Consensus 3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 32 (40)
T d2dida1 3 LCPQHHEALSLFCYEDQEAVCLICAISHTH 32 (40)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTT
T ss_pred cchhhCccceEEcccCCcEeeccCcCCCCc
Confidence 34444456689999999999999964 356
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=76.48 E-value=0.63 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=21.3
Q ss_pred CCCCCCCceEEeccCccccCchhcc-ccc
Q 029229 4 CELCGSPAKMFCESDQASLCWDCDA-KVH 31 (197)
Q Consensus 4 Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (197)
|..-+.+-.|||..|...+|..|-. .-|
T Consensus 3 C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 31 (39)
T d1frea_ 3 CSEHDERLKLYCKDDGTLSCVICRDSLKH 31 (39)
T ss_dssp CCSSCSSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred CcccCcceeEEcccCCcEeeccCcCCCCc
Confidence 4444467789999999999999954 346
No 3
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.31 E-value=1.3 Score=28.02 Aligned_cols=37 Identities=35% Similarity=0.828 Sum_probs=27.8
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccCCCCCCcceeeec
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLL 45 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpL 45 (197)
+|..-+.+-.|||..|...+|..|-..-|. .|.-++|
T Consensus 13 ~C~~H~e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l 49 (59)
T d2csva1 13 KCPVHGKTMELFCQTDQTCICYLCMFQEHK------NHSTVTV 49 (59)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTTS------SSCEEEH
T ss_pred chhhhCCccceECCCCCceECcccCcccCC------CCCeeCH
Confidence 454445677899999999999999766663 3766665
No 4
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.07 E-value=2.3 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=31.0
Q ss_pred CCCCCC-CCceEEeccCccccCchhccc-cccCCCCCCcceeeeccccccC
Q 029229 3 KCELCG-SPAKMFCESDQASLCWDCDAK-VHGANFLVANHSRTLLCHVCQS 51 (197)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa~-VHsAN~La~rH~RvpLC~~C~s 51 (197)
.|..-. .+..+||..+...+|..|-.. .| +.|.-.+|=.+.+.
T Consensus 13 ~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~~~ 57 (71)
T d2djaa1 13 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEK 57 (71)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCCC
T ss_pred cCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHHHH
Confidence 466664 678999999999999999643 56 24777666555443
No 5
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.17 E-value=2.1 Score=26.37 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCCCCCC-CCceEEeccCccccCchhcc-ccccCCCCCCcceeeeccccc
Q 029229 2 KKCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVC 49 (197)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C 49 (197)
|+|..=. .+-.+||..+...+|..|-. ..|. .|.=.+|=.+.
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~~a~ 45 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF 45 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHHHHH
Confidence 4566665 68899999999999999954 4562 36666654433
No 6
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.09 E-value=6.7 Score=23.38 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=25.5
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc--CCCCCCc-ceeeeccccccC
Q 029229 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--ANFLVAN-HSRTLLCHVCQS 51 (197)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN~La~r-H~RvpLC~~C~s 51 (197)
+|.+|+.+. ..+...+|..|+...|. .++.+.+ =...|+|..|+.
T Consensus 2 ~C~vC~~~~----~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCcCcCCCC----CCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence 577777322 23456778889888885 3332222 123566666653
No 7
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.61 E-value=5.4 Score=26.28 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=24.5
Q ss_pred CCCCCC---C-CceEEeccCccccCchhccccccC
Q 029229 3 KCELCG---S-PAKMFCESDQASLCWDCDAKVHGA 33 (197)
Q Consensus 3 ~Cd~C~---a-pA~vyC~aD~A~LC~~CDa~VHsA 33 (197)
.|-.|+ . ..++.|....-.+|..||.-||..
T Consensus 17 ~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 477887 2 334669999999999999999954
No 8
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.24 E-value=22 Score=22.88 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=36.2
Q ss_pred CCCCCCCCCCceEEeccCc-cccCchhccccccCCCCCCcceeeec
Q 029229 1 MKKCELCGSPAKMFCESDQ-ASLCWDCDAKVHGANFLVANHSRTLL 45 (197)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~-A~LC~~CDa~VHsAN~La~rH~RvpL 45 (197)
.|-|-+|..-|+|.|.... -..|..|=+..| -++-.+.|+-++.
T Consensus 1 lPWC~ICneDA~lrC~gCdgdLyC~rC~rE~H-dd~e~~~H~~~~y 45 (54)
T d2d8va1 1 LPWCCICNEDATLRCAGCDGDLYCARCFREGH-DNFDLKEHQTSPY 45 (54)
T ss_dssp CSSCTTTCSCCCEEETTTTSEEECSSHHHHHT-TTSSTTTCCEECC
T ss_pred CCEeEEecCCCceEecCCCCceehHHHHHHhc-cccccccceeccc
Confidence 3679999999999999875 467999999999 5666788887764
No 9
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.54 E-value=14 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=17.7
Q ss_pred CCCCCCC-C-CceEEeccCccccCchhcc
Q 029229 2 KKCELCG-S-PAKMFCESDQASLCWDCDA 28 (197)
Q Consensus 2 ~~Cd~C~-a-pA~vyC~aD~A~LC~~CDa 28 (197)
+.|..|+ . ...|.=-.+...||-+|..
T Consensus 3 r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl 31 (39)
T d1y0ja1 3 RECVNCGATATPLWRRDRTGHYLCNACGL 31 (39)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECSSHHH
T ss_pred CCCCCCCCCCCcccccCCCCCEeeHHhHH
Confidence 5688888 3 4444444445679999874
No 10
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.71 E-value=46 Score=21.24 Aligned_cols=28 Identities=29% Similarity=0.851 Sum_probs=21.3
Q ss_pred CCCCCC-CC---ceEEeccC----ccccCchhcccc
Q 029229 3 KCELCG-SP---AKMFCESD----QASLCWDCDAKV 30 (197)
Q Consensus 3 ~Cd~C~-ap---A~vyC~aD----~A~LC~~CDa~V 30 (197)
.|+.|+ .| .++.|... .--||..|=...
T Consensus 16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~ 51 (69)
T d2fc7a1 16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 51 (69)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCc
Confidence 699999 54 57889876 577999995433
No 11
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.88 E-value=17 Score=21.69 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=21.1
Q ss_pred CCCCC-CCceEEeccCccccCchhcc-ccc
Q 029229 4 CELCG-SPAKMFCESDQASLCWDCDA-KVH 31 (197)
Q Consensus 4 Cd~C~-apA~vyC~aD~A~LC~~CDa-~VH 31 (197)
|..=. .+-.+||..+...+|..|-. ..|
T Consensus 8 C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H 37 (47)
T d2dq5a1 8 CLEHEDEKVNMYCVTDDQLICALCKLVGRH 37 (47)
T ss_dssp CSSCTTSBEEEEETTTTEEEEHHHHHTSST
T ss_pred chhhCCCcceEEcCCCCccCCccCcCcCCc
Confidence 44443 46689999999999999953 356
Done!