BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029230
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%)
Query: 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQL 67
++ C+ C KTVY +++L A+ +V+H +CFRC +C L L + S G +YC+PHF+QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 68 FKRTGSLEKSFEGTP 82
FK G+ ++ F P
Sbjct: 74 FKSKGNYDEGFGSGP 88
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 106 TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165
R+ CV C +TVYP E++ N +H SCF+CS+ +S Y + G++YCK H QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 166 FREKGNYSQ 174
F+ KGNY +
Sbjct: 74 FKSKGNYDE 82
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 12/177 (6%)
Query: 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63
P G +KC C K VY +++ + +HK+CF C CK L + +YC+
Sbjct: 2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSC 61
Query: 64 FDQLFKRTGSLEKSFEGTPKIVKPEKL-----------VENENAQKVSNKFVGTRDKCVG 112
+ + + G + GT K E L N NA +++ K VG D C
Sbjct: 62 YGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPR 120
Query: 113 CDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREK 169
C + VY EKV G ++H+SCF+C+ G ++ + +G++YCK + + F K
Sbjct: 121 CGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 87 PEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISP 146
P + N N K + KF G +KC C +VY EKV G +H++CF+C+ G ++
Sbjct: 17 PHRPTTNPNTSKFAQKFGGA-EKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLES 75
Query: 147 SNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 183
+ EG++YCK + + F KG Y Q L +Q
Sbjct: 76 TTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ 113
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC 60
A FGG + KC AC +VY +K+ + +HK CFRC C +L+ + EG +YC
Sbjct: 29 FAQKFGGAE-KCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYC 87
Query: 61 RPHFDQLFKRTG 72
+ + + F G
Sbjct: 88 KGCYAKNFGPKG 99
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 87 PEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISP 146
P + N N K + KF G +KC C +VY EKV G +H++CF+C+ G ++
Sbjct: 17 PHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLES 75
Query: 147 SNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 183
+ EG++YCK + + F KG Y Q L +Q
Sbjct: 76 TTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ 113
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC 60
A FGG + KC C +VY +K+ + +HK CFRC C +L+ + EG +YC
Sbjct: 29 FAQKFGGAE-KCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYC 87
Query: 61 RPHFDQLFKRTG 72
+ + + F G
Sbjct: 88 KGCYAKNFGPKG 99
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHH-HIQLFR 167
KC CD+ VY E+V+ G +HR C KC G T++ + HEGK YC H + +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 168 EKG 170
KG
Sbjct: 62 PKG 64
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCR-PHFDQLFK 69
KC CDK VY +++T+ + +H+ C +C C TL EG YC P + +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 70 RTG 72
G
Sbjct: 62 PKG 64
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 104 VGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHI 163
VG D C C + VY EKV G ++H+SCF+C+ G ++ + +G++YCK +
Sbjct: 5 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYA 64
Query: 164 QLFREK 169
+ F K
Sbjct: 65 KNFGPK 70
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC 60
MA GG+ C C + VY +K+ + +HK+CFRC C +L+ + +G +YC
Sbjct: 1 MAQKVGGSDG-CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYC 59
Query: 61 RPHFDQLF 68
+ + + F
Sbjct: 60 KGCYAKNF 67
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC 158
KC CD+TVY EKVS G +H+ C KC T++P + H+GK +C
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 10 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLF 68
KC CDKTVY +K+++ + +HK C +C C TL +G +C +P + LF
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
KC C K+VY +K+ + +HK CFRC C +L+ +N +G LYC+ + + F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
KC C ++VY EKV G +H++CF+C+ G ++ +N +G+LYCK + + F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF--EGVLYCRPHF 64
G C C + +Y++++L + +H++CFRCH C+ TL + +G YC H
Sbjct: 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
Query: 65 DQ 66
Q
Sbjct: 73 PQ 74
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 104 VGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAH--EGKLYCKHH 161
G D C C +Y E++ VNG +HRSCF+C T+ P Y H +G YC H
Sbjct: 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQH 71
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK 159
KC C++TVY E++ NG ++H++CF C + + AHE ++YCK
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCR 61
KC AC+KTVY +++ + R +HK CF C C+ L + + E +YC+
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And
Glycine- Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63
P G KC AC +TVY +++ D R +H+ CF C C+ L + + +YC+
Sbjct: 2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSC 61
Query: 64 FDQLFKRTGSLEKSFEGT 81
+ + + G GT
Sbjct: 62 YGKKYGPKGYGYGQGAGT 79
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 105 GTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164
G +KC C RTVY E+V +G ++HR CF C + + H+ ++YCK + +
Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64
Query: 165 LFREKG-NYSQLESDLE 180
+ KG Y Q L
Sbjct: 65 KYGPKGYGYGQGAGTLN 81
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 48/164 (29%)
Query: 6 GGTQQ--KCMACDKTVYLVDK--LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCR 61
G QQ +C C++ +++DK L +R +H +C +C C+ L F S G +YC+
Sbjct: 1 GSMQQIPQCAGCNQ--HILDKFILKVLDRHWHSSCLKCADCQMQLADRCF-SRAGSVYCK 57
Query: 62 PHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTE 121
F FKR G+ KC C + + PT+
Sbjct: 58 EDF---FKRFGT-----------------------------------KCTACQQGIPPTQ 79
Query: 122 KV-SVNGAAYHRSCFKCSHGGCTISPSN--YIAHEGKLYCKHHH 162
V YH CF C ++ + Y+ +G+L CK +
Sbjct: 80 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 123
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFRE 168
+C GC++ + + V +H SC KC+ ++ + + G +YCK + F
Sbjct: 8 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCF-SRAGSVYCKEDFFKRFGT 66
Query: 169 K 169
K
Sbjct: 67 K 67
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 40/157 (25%)
Query: 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF--EGVLYCRPHFD 65
+ ++C C + L A + +H C +C C+ L +S+ G++ CR +
Sbjct: 2 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 61
Query: 66 QLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKV-S 124
+LF +G+ C C +++ +E V
Sbjct: 62 RLFGNSGA------------------------------------CSACGQSIPASELVMR 85
Query: 125 VNGAAYHRSCFKCSHGGCTISPSNYIAH-EGKLYCKH 160
G YH CF CS + P + + G L+C+H
Sbjct: 86 AQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 122
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 GTQQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSN-FNSFEGVLYC 60
G C AC +++ + + A VYH CF C C+ L + F+ G L+C
Sbjct: 65 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 120
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGC-----TISPSNYIAHEGKLYCKHHHI 163
+C GC + + + +H C KCS C I S+Y G + C++ +I
Sbjct: 5 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSS--CQAQLGDIGTSSY-TKSGMILCRNDYI 61
Query: 164 QLFREKGNYSQLESDLEKSQI 184
+LF G S + S++
Sbjct: 62 RLFGNSGACSACGQSIPASEL 82
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 40/157 (25%)
Query: 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF--EGVLYCRPHFD 65
+ ++C C + L A + +H C +C C+ L +S+ G++ CR +
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 66 QLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKV-S 124
+LF +G+ C C +++ +E V
Sbjct: 64 RLFGNSGA------------------------------------CSACGQSIPASELVMR 87
Query: 125 VNGAAYHRSCFKCSHGGCTISPSNYIAH-EGKLYCKH 160
G YH CF CS + P + + G L+C+H
Sbjct: 88 AQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 GTQQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSN-FNSFEGVLYC 60
G C AC +++ + + A VYH CF C C+ L + F+ G L+C
Sbjct: 67 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 122
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGC-----TISPSNYIAHEGKLYCKHHHI 163
+C GC + + + +H C KCS C I S+Y G + C++ +I
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSS--CQAQLGDIGTSSY-TKSGMILCRNDYI 63
Query: 164 QLFREKGNYSQLESDLEKSQI 184
+LF G S + S++
Sbjct: 64 RLFGNSGACSACGQSIPASEL 84
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHF 64
KC C++ V L + L+A + V+H CF C C + +F +G +C H+
Sbjct: 17 KCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 162
KC GC+R V +S +H CF C + S ++ +G+ +C+ H+
Sbjct: 17 KCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 42/151 (27%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT 71
C CD+ + L A +R +H C +C C L F+ E V YC+ D FKR
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCK---DDFFKRF 118
Query: 72 GSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKV-SVNGAAY 130
G+ KC C + PT+ V Y
Sbjct: 119 GT-----------------------------------KCAACQLGIPPTQVVRRAQDFVY 143
Query: 131 HRSCFKCSHGGCTISPSN--YIAHEGKLYCK 159
H CF C ++ + Y+ + +L CK
Sbjct: 144 HLHCFACVVCKRQLATGDEFYLMEDSRLVCK 174
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 42/151 (27%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT 71
C CD+ + L A +R +H C +C C L F+ E V YC+ D FKR
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCK---DDFFKRF 64
Query: 72 GSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKV-SVNGAAY 130
G+ KC C + PT+ V Y
Sbjct: 65 GT-----------------------------------KCAACQLGIPPTQVVRRAQDFVY 89
Query: 131 HRSCFKCSHGGCTISPSN--YIAHEGKLYCK 159
H CF C ++ + Y+ + +L CK
Sbjct: 90 HLHCFACVVCKRQLATGDEFYLMEDSRLVCK 120
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63
P G C C++ + L A + +H F C HCK T+ F +G LYC
Sbjct: 20 PAGKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
Query: 64 FDQLF 68
+++ F
Sbjct: 79 YEKFF 83
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 110 CVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
C C P EK V+ NG YH CF C+ + EG+ YC+H LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 6 GGTQQKCMACDKTVYLVDKLTADN-RVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHF 64
G C C +K+ N +YH+ CF C C F FEG YC F
Sbjct: 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67
Query: 65 DQLF 68
LF
Sbjct: 68 QMLF 71
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 110 CVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
C C P EK V+ NG YH CF C+ + EG+ YC+H LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 25 LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
+ ++ +YH+ CF C C F FEG YC F LF
Sbjct: 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 110 CVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
C C P EK V+ NG YH CF C+ + EG+ YC+H LF
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 25 LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
+ ++ +YH+ CF C C F FEG YC F LF
Sbjct: 24 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 110 CVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
C C P E+ V+ NG YH CF C+ + EG+ YC+H LF
Sbjct: 14 CQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 6 GGTQQKCMACDKTVYLVDKLTADN-RVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHF 64
G C C +++ N +YH+ CF C C F FEG YC F
Sbjct: 8 GSANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 67
Query: 65 DQLF 68
LF
Sbjct: 68 QMLF 71
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
C C + + L A ++ +H +CF+C C + + S +GV YC + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCS-VILTGEYISKDGVPYCESDYHAQF 73
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 110 CVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCT-ISPSNYIAHEGKLYCK-HHHIQL 165
C GC + + + +H SCFKC C+ I YI+ +G YC+ +H Q
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQT--CSVILTGEYISKDGVPYCESDYHAQF 73
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 7 GTQQKCMACDK--TVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63
G+ Q+ CDK + + + A ++ H CF C C LK + EG LYC H
Sbjct: 20 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
>pdb|1ZFO|A Chain A, Amino-Terminal Lim-Domain Peptide Of Lasp-1, Nmr
Length = 31
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 110 CVGCDRTVYPTEKVSVNGAAYHRSCF 135
C C + VYPTEKV+ +H++CF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACF 37
C C K VY +K+ ++ +HKACF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
+C C KT+ +T ++ +H+ C C C+ L F S + YC F +LF
Sbjct: 17 RCARCSKTL-TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
>pdb|1X61|A Chain A, Solution Structure Of The First Lim Domain Of Thyroid
Receptor Interacting Protein 6 (Trip6)
Length = 72
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 25 LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC 60
+ A +RV+H CF C C+ L+ +F + E YC
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYC 57
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 12 CMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQ 66
C C KT+ K+ +H+ CF CH C+ + +F + +C P +++
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 110 CVGCDRTVYP-TEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC 158
C C +T+ P T K+ G+++H +CF C I ++I + + +C
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFC 57
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 24 KLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
KL + +H+ CF C C+ L +F +G YC P ++ F
Sbjct: 21 KLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 11 KCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNF 51
KC C K + D+ + V+HK CF C +CK + +F
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSF 58
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 109 KCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166
KC GC + + ++ V G +H+ CF CS+ I ++ YC H F
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF--EGVLYCRPHFD 65
+ ++C C + L A + +H C +C C+ L +S+ G++ CR +
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 66 QLF 68
+LF
Sbjct: 64 RLF 66
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGC-----TISPSNYIAHEGKLYCKHHHI 163
+C GC + + + +H C KCS C I S+Y G + C++ +I
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSS--CQAQLGDIGTSSY-TKSGMILCRNDYI 63
Query: 164 QLF 166
+LF
Sbjct: 64 RLF 66
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68
C+ C K + +T + +HK CF C C+ L F + + YC F L+
Sbjct: 8 CVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
>pdb|2D8X|A Chain A, Solution Structure Of The Second Lim Domain Of
Particularly Interesting New Cys-His Protein (Pinch)
Length = 70
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 25 LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRP 62
+ A N +H CFRC C+ L F G CRP
Sbjct: 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRP 57
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 10 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF--EGVLYCRPHFDQL 67
++C C + L A + +H C +C C+ L +S+ G++ CR + +L
Sbjct: 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
Query: 68 F 68
F
Sbjct: 122 F 122
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 109 KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGC-----TISPSNYIAHEGKLYCKHHHI 163
+C GC + + + +H C KCS C I S+Y G + C++ +I
Sbjct: 63 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSS--CQAQLGDIGTSSY-TKSGMILCRNDYI 119
Query: 164 QLF 166
+LF
Sbjct: 120 RLF 122
>pdb|1V6G|A Chain A, Solution Structure Of The Lim Domain Of The Human Actin
Binding Lim Protein 2
Length = 81
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 101 NKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGK 155
+ GTR C CD+ + E VS G YH CF C+ P + + GK
Sbjct: 11 QRLYGTR--CFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGK 62
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 7 GTQQKCMACDKTVYLVD-KLTADNRVYHKACFRCHHCK 43
G C +CDK + + + ++VYH CF+C C+
Sbjct: 8 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 45
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 102 KFVGTRDKCVGCDRTVYPTE-KVSVNGAAYHRSCFKCS 138
+ G C CD+ + E + V YH CFKC+
Sbjct: 5 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCA 42
>pdb|2EGQ|A Chain A, Solution Structure Of The Fourth Lim Domain From Human
Four And A Half Lim Domains 1
Length = 77
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 109 KCVGCDRTVYPTEK----VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC 158
KC GC + K V+ G ++H CF C ++ ++ H+ ++YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYC 70
>pdb|2G18|A Chain A, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|B Chain B, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|C Chain C, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|D Chain D, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|E Chain E, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|F Chain F, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|G Chain G, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|H Chain H, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|I Chain I, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|J Chain J, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|K Chain K, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
pdb|2G18|L Chain L, Crystal Structure Of Nostoc Sp. 7120
Phycocyanobilin:ferredoxin Oxidoreductase (Pcya)
Apoprotein
Length = 253
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 23 DKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC----RPHFD 65
+KLT +NR Y FR H L+L+ + +L+C RP +D
Sbjct: 61 EKLTIENRCYQTPQFRKMH----LELAKVGNMLDILHCVMFPRPEYD 103
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC 60
C+ C+K + +T ++ +H CF C C L F + E YC
Sbjct: 8 CVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC 55
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 113 CDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172
CD+T +P + A Y C GG I P + +CK ++Q+F K N
Sbjct: 7 CDKTSHPYQ-----AALYTSGHLLC--GGVLIHPLWVLT---AAHCKKPNLQVFLGKHNL 56
Query: 173 SQLESDLEKSQI 184
Q ES E+S +
Sbjct: 57 RQRESSQEQSSV 68
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 7 GTQQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCK 43
G C +CDK + + + ++VYH CF+C C+
Sbjct: 6 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 43
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
pdb|4DZS|B Chain B, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
Length = 357
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 6 GGTQQKCMACDKTVYLVDKLTAD 28
G T+Q CDK + LVDKLT D
Sbjct: 202 GTTEQCDNLCDKLLALVDKLTLD 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,363,214
Number of Sequences: 62578
Number of extensions: 254959
Number of successful extensions: 679
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 117
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)