Query 029230
Match_columns 197
No_of_seqs 253 out of 1326
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 6.2E-35 2.1E-39 225.8 15.1 169 6-178 4-186 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 1E-33 3.5E-38 206.2 9.4 124 9-170 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 1.1E-32 3.6E-37 199.6 8.7 121 8-166 2-125 (126)
4 1rut_X Flinc4, fusion protein 100.0 4.5E-32 1.5E-36 209.1 7.3 129 7-173 3-137 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 7.9E-31 2.7E-35 198.9 10.4 124 7-169 4-130 (169)
6 2jtn_A LIM domain-binding prot 100.0 1E-30 3.4E-35 200.6 10.6 126 2-166 53-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.5E-27 5.2E-32 166.0 6.2 98 6-141 2-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 1.1E-25 3.9E-30 161.8 3.2 113 7-171 3-119 (122)
9 2cuq_A Four and A half LIM dom 99.9 1.2E-22 4.2E-27 135.2 5.2 79 55-172 1-79 (80)
10 1x3h_A Leupaxin; paxillin fami 99.9 1.2E-22 4E-27 135.3 5.1 79 55-172 1-79 (80)
11 1x63_A Skeletal muscle LIM-pro 99.9 1.6E-22 5.4E-27 135.3 5.5 80 55-172 1-81 (82)
12 1j2o_A FLIN2, fusion of rhombo 99.9 1.7E-22 5.8E-27 143.5 5.2 108 8-172 2-112 (114)
13 2ehe_A Four and A half LIM dom 99.9 6.8E-23 2.3E-27 137.1 2.6 80 55-172 1-81 (82)
14 2dlo_A Thyroid receptor-intera 99.8 9.5E-22 3.3E-26 131.2 5.2 64 108-172 16-80 (81)
15 1x6a_A LIMK-2, LIM domain kina 99.8 5.8E-21 2E-25 127.4 4.8 78 55-171 1-80 (81)
16 2egq_A FHL1 protein; LIM domai 99.8 4.9E-21 1.7E-25 126.5 4.1 73 55-165 1-77 (77)
17 2d8y_A Eplin protein; LIM doma 99.8 6.3E-20 2.1E-24 125.0 7.1 74 107-180 15-88 (91)
18 2cu8_A Cysteine-rich protein 2 99.8 8.7E-20 3E-24 120.2 6.6 69 103-171 5-74 (76)
19 1iml_A CRIP, cysteine rich int 99.8 1.9E-19 6.7E-24 118.5 6.1 70 108-177 1-71 (76)
20 1a7i_A QCRP2 (LIM1); LIM domai 99.8 1.3E-19 4.5E-24 120.8 4.4 71 105-175 5-75 (81)
21 2dj7_A Actin-binding LIM prote 99.8 2.8E-19 9.7E-24 118.9 5.9 65 107-172 15-79 (80)
22 2dar_A PDZ and LIM domain prot 99.8 9E-19 3.1E-23 119.0 8.1 65 107-172 25-89 (90)
23 2cur_A Skeletal muscle LIM-pro 99.8 1.2E-18 4.2E-23 112.5 6.8 64 107-171 5-68 (69)
24 1x68_A FHL5 protein; four-and- 99.8 4.7E-19 1.6E-23 116.7 4.8 68 108-175 6-76 (76)
25 1v6g_A Actin binding LIM prote 99.8 3.5E-19 1.2E-23 118.7 4.1 77 56-171 2-79 (81)
26 1a7i_A QCRP2 (LIM1); LIM domai 99.8 3E-19 1E-23 119.0 3.7 66 4-69 2-67 (81)
27 1wyh_A SLIM 2, skeletal muscle 99.8 1.3E-18 4.3E-23 113.3 6.4 65 108-172 6-71 (72)
28 1nyp_A Pinch protein; LIM doma 99.7 8.4E-19 2.9E-23 112.3 4.9 61 108-169 6-66 (66)
29 2d8z_A Four and A half LIM dom 99.7 1.8E-18 6.1E-23 112.0 6.5 64 108-172 6-69 (70)
30 1iml_A CRIP, cysteine rich int 99.7 1.3E-18 4.4E-23 114.5 5.8 60 10-69 1-61 (76)
31 1x4k_A Skeletal muscle LIM-pro 99.7 2.1E-18 7.3E-23 112.2 6.8 65 108-172 6-71 (72)
32 2cu8_A Cysteine-rich protein 2 99.7 1.8E-18 6.1E-23 113.8 6.0 70 2-71 2-72 (76)
33 1g47_A Pinch protein; LIM doma 99.7 1.7E-18 5.7E-23 114.2 5.8 65 107-171 11-76 (77)
34 2cup_A Skeletal muscle LIM-pro 99.7 2.7E-18 9.4E-23 118.9 6.4 73 107-179 5-78 (101)
35 1x64_A Alpha-actinin-2 associa 99.7 8.6E-18 2.9E-22 113.9 8.3 64 107-171 25-88 (89)
36 1j2o_A FLIN2, fusion of rhombo 99.7 3.2E-18 1.1E-22 121.3 6.3 68 107-174 3-72 (114)
37 2xqn_T Testin, TESS; metal-bin 99.7 4.2E-18 1.4E-22 122.6 6.8 73 108-180 4-76 (126)
38 1x4l_A Skeletal muscle LIM-pro 99.7 3.1E-18 1.1E-22 111.5 5.3 64 107-170 5-71 (72)
39 2d8x_A Protein pinch; LIM doma 99.7 8.7E-18 3E-22 108.8 7.3 64 107-171 5-68 (70)
40 1m3v_A FLIN4, fusion of the LI 99.7 5.3E-18 1.8E-22 121.6 6.4 74 107-180 5-82 (122)
41 1x62_A C-terminal LIM domain p 99.7 3E-18 1E-22 113.6 4.2 64 107-171 15-78 (79)
42 2cor_A Pinch protein; LIM doma 99.7 2.8E-17 9.5E-22 109.0 6.4 63 107-171 15-77 (79)
43 2cur_A Skeletal muscle LIM-pro 99.7 1.8E-17 6.1E-22 107.0 5.4 62 7-69 3-64 (69)
44 2l3k_A Rhombotin-2, linker, LI 99.7 5.9E-18 2E-22 121.5 3.4 71 108-178 9-81 (123)
45 2jtn_A LIM domain-binding prot 99.7 1.7E-17 5.9E-22 126.7 5.9 72 107-179 60-131 (182)
46 2dj7_A Actin-binding LIM prote 99.7 2.5E-17 8.5E-22 109.5 5.8 65 7-72 13-77 (80)
47 2d8y_A Eplin protein; LIM doma 99.7 2.3E-17 8E-22 112.2 5.6 72 8-79 14-85 (91)
48 1x61_A Thyroid receptor intera 99.7 3.6E-17 1.2E-21 106.4 6.2 61 107-167 5-66 (72)
49 2d8z_A Four and A half LIM dom 99.7 3.7E-17 1.3E-21 105.7 5.3 65 7-72 3-67 (70)
50 3f6q_B LIM and senescent cell 99.7 5E-17 1.7E-21 105.5 5.5 60 108-167 12-72 (72)
51 1x62_A C-terminal LIM domain p 99.7 2.3E-17 7.8E-22 109.3 3.7 66 6-72 12-77 (79)
52 2co8_A NEDD9 interacting prote 99.7 1.6E-17 5.6E-22 110.8 3.0 64 106-169 14-79 (82)
53 1wig_A KIAA1808 protein; LIM d 99.7 4.7E-17 1.6E-21 106.2 5.1 61 108-169 6-67 (73)
54 1x68_A FHL5 protein; four-and- 99.7 3.1E-17 1.1E-21 107.9 4.2 62 8-69 4-68 (76)
55 1nyp_A Pinch protein; LIM doma 99.7 3.1E-17 1.1E-21 104.9 4.0 62 8-70 4-65 (66)
56 2d8x_A Protein pinch; LIM doma 99.7 5.6E-17 1.9E-21 104.9 5.2 65 6-71 2-66 (70)
57 2dar_A PDZ and LIM domain prot 99.7 7.8E-17 2.7E-21 109.4 5.9 65 7-72 23-87 (90)
58 1wyh_A SLIM 2, skeletal muscle 99.7 7E-17 2.4E-21 104.9 5.3 65 8-72 4-69 (72)
59 1x4k_A Skeletal muscle LIM-pro 99.7 9.3E-17 3.2E-21 104.4 5.4 65 8-72 4-69 (72)
60 2xjy_A Rhombotin-2; oncoprotei 99.7 1.2E-16 4.2E-21 115.6 6.7 72 108-179 3-78 (131)
61 1x4l_A Skeletal muscle LIM-pro 99.7 5.3E-17 1.8E-21 105.6 4.0 65 6-70 2-69 (72)
62 1g47_A Pinch protein; LIM doma 99.7 7.2E-17 2.5E-21 106.3 4.4 67 5-71 7-74 (77)
63 1x64_A Alpha-actinin-2 associa 99.6 1.2E-16 4.1E-21 108.2 5.1 65 7-72 23-87 (89)
64 2l4z_A DNA endonuclease RBBP8, 99.6 1E-16 3.5E-21 114.9 4.7 61 107-167 61-123 (123)
65 2rgt_A Fusion of LIM/homeobox 99.6 2.3E-16 7.8E-21 119.1 6.7 72 107-179 6-77 (169)
66 2iyb_E Testin, TESS, TES; LIM 99.6 1.8E-16 6.1E-21 101.1 4.7 58 108-165 3-64 (65)
67 1x61_A Thyroid receptor intera 99.6 2.2E-16 7.6E-21 102.6 5.1 63 7-69 3-66 (72)
68 1x3h_A Leupaxin; paxillin fami 99.6 2.7E-16 9.4E-21 104.2 5.4 62 8-70 14-75 (80)
69 1b8t_A Protein (CRP1); LIM dom 99.6 4.6E-16 1.6E-20 119.8 7.0 68 107-174 7-74 (192)
70 1x63_A Skeletal muscle LIM-pro 99.6 3.4E-16 1.2E-20 104.3 5.1 66 8-73 14-80 (82)
71 2dlo_A Thyroid receptor-intera 99.6 4.8E-16 1.6E-20 103.4 4.9 63 7-70 13-76 (81)
72 2cor_A Pinch protein; LIM doma 99.6 3.1E-16 1E-20 103.9 3.8 65 6-72 12-76 (79)
73 2co8_A NEDD9 interacting prote 99.6 1.6E-16 5.3E-21 106.1 2.3 64 6-69 12-77 (82)
74 2cuq_A Four and A half LIM dom 99.6 6.7E-16 2.3E-20 102.3 5.4 64 8-72 14-77 (80)
75 2ehe_A Four and A half LIM dom 99.6 3.1E-16 1.1E-20 104.5 3.5 65 8-72 14-79 (82)
76 1wig_A KIAA1808 protein; LIM d 99.6 4.8E-16 1.7E-20 101.4 3.8 61 8-69 4-65 (73)
77 3f6q_B LIM and senescent cell 99.6 5.8E-16 2E-20 100.4 4.2 63 7-69 9-72 (72)
78 1rut_X Flinc4, fusion protein 99.6 6.3E-16 2.2E-20 118.6 4.7 72 108-179 6-81 (188)
79 2l4z_A DNA endonuclease RBBP8, 99.6 8.6E-16 2.9E-20 110.1 4.8 62 8-69 60-123 (123)
80 2iyb_E Testin, TESS, TES; LIM 99.6 1.7E-15 5.7E-20 96.6 3.5 59 9-67 2-64 (65)
81 2egq_A FHL1 protein; LIM domai 99.5 2.9E-15 1E-19 98.5 4.3 60 8-67 14-77 (77)
82 1x6a_A LIMK-2, LIM domain kina 99.5 6.6E-15 2.3E-19 97.7 4.6 62 8-70 14-77 (81)
83 2l3k_A Rhombotin-2, linker, LI 99.5 9.7E-15 3.3E-19 104.6 4.6 65 10-74 9-75 (123)
84 1v6g_A Actin binding LIM prote 99.4 6.2E-14 2.1E-18 93.0 2.3 61 8-69 14-75 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.7 6.7E-09 2.3E-13 55.8 2.0 28 108-135 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.3 1.3E-07 4.4E-12 50.7 1.3 29 9-37 3-31 (31)
87 1jjd_A Metallothionein, SMTA; 87.8 0.43 1.5E-05 28.4 2.8 30 136-165 9-39 (55)
88 2ysm_A Myeloid/lymphoid or mix 87.6 1.1 3.8E-05 30.3 5.3 97 6-164 4-104 (111)
89 1t1h_A Gspef-atpub14, armadill 86.1 0.96 3.3E-05 28.2 4.0 34 35-69 7-40 (78)
90 4ap4_A E3 ubiquitin ligase RNF 85.6 0.49 1.7E-05 32.5 2.6 104 37-179 8-125 (133)
91 2ct0_A Non-SMC element 1 homol 84.8 0.71 2.4E-05 29.2 2.8 29 107-135 15-43 (74)
92 4ap4_A E3 ubiquitin ligase RNF 84.4 1.5 5E-05 30.0 4.7 42 108-149 73-128 (133)
93 2ecy_A TNF receptor-associated 82.6 1.2 4E-05 26.8 3.2 33 36-69 15-47 (66)
94 2ysl_A Tripartite motif-contai 81.1 1.5 5E-05 26.8 3.2 33 36-69 20-52 (73)
95 1g25_A CDK-activating kinase a 80.6 1.9 6.6E-05 25.7 3.6 33 37-69 4-40 (65)
96 3vk6_A E3 ubiquitin-protein li 80.6 1.3 4.3E-05 29.7 2.9 67 38-145 3-72 (101)
97 2djb_A Polycomb group ring fin 80.4 1.7 5.7E-05 26.6 3.3 35 35-69 14-48 (72)
98 2ct0_A Non-SMC element 1 homol 78.5 1 3.6E-05 28.3 1.9 34 4-37 10-43 (74)
99 3nw0_A Non-structural maintena 77.8 1.1 3.8E-05 34.8 2.3 33 103-135 176-208 (238)
100 2yur_A Retinoblastoma-binding 77.4 2.1 7E-05 26.4 3.1 34 35-69 14-48 (74)
101 2gvi_A Conserved hypothetical 76.9 0.84 2.9E-05 34.6 1.3 30 135-164 173-202 (204)
102 3lrq_A E3 ubiquitin-protein li 76.2 2.3 7.7E-05 28.0 3.2 34 36-69 22-55 (100)
103 2kwj_A Zinc finger protein DPF 75.2 1.1 3.7E-05 30.7 1.4 49 108-165 59-109 (114)
104 2ckl_B Ubiquitin ligase protei 75.1 2.5 8.7E-05 30.4 3.5 35 35-69 53-87 (165)
105 3ztg_A E3 ubiquitin-protein li 73.9 3.3 0.00011 26.5 3.5 34 35-69 12-46 (92)
106 2y43_A E3 ubiquitin-protein li 72.6 2.9 9.8E-05 27.3 3.0 35 35-69 21-55 (99)
107 1chc_A Equine herpes virus-1 r 72.3 3.4 0.00012 24.7 3.1 32 38-69 7-38 (68)
108 1jm7_B BARD1, BRCA1-associated 72.2 2.7 9.1E-05 28.5 2.8 33 36-69 22-55 (117)
109 2eqg_A Tumor necrosis factor, 71.2 2.5 8.7E-05 23.6 2.0 19 148-166 21-39 (49)
110 3hct_A TNF receptor-associated 70.3 3.6 0.00012 27.8 3.2 33 36-69 18-50 (118)
111 3hcs_A TNF receptor-associated 70.2 3.4 0.00012 29.9 3.2 34 35-69 17-50 (170)
112 2xeu_A Ring finger protein 4; 69.3 2.3 7.8E-05 25.0 1.7 40 108-147 4-57 (64)
113 1weo_A Cellulose synthase, cat 69.0 7 0.00024 25.5 4.0 11 58-68 44-54 (93)
114 1e4u_A Transcriptional repress 68.5 4.4 0.00015 25.5 3.1 33 37-69 12-47 (78)
115 2ct2_A Tripartite motif protei 68.3 5.8 0.0002 24.9 3.7 33 37-69 16-51 (88)
116 1rmd_A RAG1; V(D)J recombinati 68.1 4.4 0.00015 27.2 3.2 34 35-69 22-55 (116)
117 1jm7_A BRCA1, breast cancer ty 67.7 6 0.00021 26.1 3.8 33 36-69 21-53 (112)
118 2e5r_A Dystrobrevin alpha; ZZ 67.4 6.5 0.00022 23.8 3.5 38 126-165 5-45 (63)
119 2c2l_A CHIP, carboxy terminus 66.7 5.9 0.0002 30.6 4.1 37 32-69 204-240 (281)
120 3fl2_A E3 ubiquitin-protein li 66.2 5.5 0.00019 27.1 3.4 34 35-69 51-84 (124)
121 2gvi_A Conserved hypothetical 66.0 1.6 5.4E-05 33.1 0.6 31 36-66 172-202 (204)
122 2ecv_A Tripartite motif-contai 65.8 6.1 0.00021 24.4 3.4 33 36-69 19-51 (85)
123 2ckl_A Polycomb group ring fin 64.8 5.1 0.00017 26.5 3.0 34 35-69 14-48 (108)
124 4gne_A Histone-lysine N-methyl 64.7 11 0.00036 25.4 4.5 42 8-63 14-59 (107)
125 2ecw_A Tripartite motif-contai 64.5 8.1 0.00028 23.8 3.8 33 36-69 19-51 (85)
126 2csy_A Zinc finger protein 183 64.3 5 0.00017 24.9 2.7 33 36-69 15-47 (81)
127 2ecm_A Ring finger and CHY zin 64.1 6.5 0.00022 22.2 3.0 38 108-145 6-54 (55)
128 4ayc_A E3 ubiquitin-protein li 63.2 6.4 0.00022 27.4 3.3 32 37-69 54-85 (138)
129 1x4j_A Ring finger protein 38; 63.1 4.3 0.00015 24.9 2.2 38 108-145 24-71 (75)
130 2cs3_A Protein C14ORF4, MY039 62.8 3.5 0.00012 26.4 1.6 32 9-40 15-46 (93)
131 2kre_A Ubiquitin conjugation f 61.8 11 0.00037 24.8 4.1 35 34-69 27-61 (100)
132 1z6u_A NP95-like ring finger p 60.9 7.6 0.00026 27.6 3.4 34 35-69 77-110 (150)
133 2cs3_A Protein C14ORF4, MY039 60.7 4.7 0.00016 25.8 2.0 49 107-160 15-63 (93)
134 2kr4_A Ubiquitin conjugation f 60.3 7 0.00024 24.8 2.9 35 34-69 12-46 (85)
135 1wgm_A Ubiquitin conjugation f 59.3 11 0.00036 24.7 3.7 35 34-69 20-55 (98)
136 2f42_A STIP1 homology and U-bo 58.6 9.3 0.00032 28.2 3.6 35 34-69 104-138 (179)
137 2d8t_A Dactylidin, ring finger 57.7 9.5 0.00033 22.9 3.1 32 36-68 15-46 (71)
138 3ng2_A RNF4, snurf, ring finge 57.7 3.7 0.00013 24.6 1.1 43 7-49 8-64 (71)
139 2ysj_A Tripartite motif-contai 56.5 11 0.00039 21.9 3.2 33 36-69 20-52 (63)
140 1iym_A EL5; ring-H2 finger, ub 56.4 9.1 0.00031 21.5 2.7 28 108-135 6-36 (55)
141 3l11_A E3 ubiquitin-protein li 56.2 4.7 0.00016 27.0 1.6 32 36-68 15-46 (115)
142 2ect_A Ring finger protein 126 55.8 15 0.0005 22.4 3.8 33 37-69 16-50 (78)
143 2ep4_A Ring finger protein 24; 52.4 17 0.00057 21.9 3.6 33 37-69 16-50 (74)
144 2yu4_A E3 SUMO-protein ligase 52.0 28 0.00097 22.2 4.9 32 135-167 8-40 (94)
145 2egp_A Tripartite motif-contai 52.0 6 0.0002 24.3 1.4 31 37-68 13-43 (79)
146 2jrp_A Putative cytoplasmic pr 51.9 6.7 0.00023 25.1 1.6 11 10-20 3-13 (81)
147 1v9x_A Poly (ADP-ribose) polym 51.9 6.9 0.00024 26.7 1.8 29 108-136 21-60 (114)
148 2dmj_A Poly (ADP-ribose) polym 51.3 6.2 0.00021 26.5 1.5 29 108-136 26-65 (106)
149 2d8s_A Cellular modulator of i 50.3 17 0.00059 22.8 3.5 32 6-37 12-49 (80)
150 2ea6_A Ring finger protein 4; 49.2 6.7 0.00023 23.2 1.3 11 10-20 16-26 (69)
151 2kiz_A E3 ubiquitin-protein li 47.6 12 0.00042 22.2 2.3 28 108-135 15-44 (69)
152 3odc_A Poly [ADP-ribose] polym 43.6 8.6 0.00029 26.1 1.2 14 108-121 20-33 (111)
153 3od8_A Poly [ADP-ribose] polym 42.8 8.6 0.00029 26.4 1.1 14 108-121 39-52 (116)
154 2ecg_A Baculoviral IAP repeat- 42.6 17 0.00057 22.2 2.4 29 37-66 26-55 (75)
155 2vpb_A Hpygo1, pygopus homolog 42.5 11 0.00036 22.9 1.4 48 108-162 9-64 (65)
156 3v43_A Histone acetyltransfera 42.4 8.3 0.00028 26.0 1.0 28 108-135 62-92 (112)
157 1uw0_A DNA ligase III; DNA rep 42.4 11 0.00039 25.7 1.7 14 108-121 16-29 (117)
158 2ecl_A Ring-box protein 2; RNF 41.7 11 0.00037 23.5 1.5 40 8-47 14-75 (81)
159 2yt5_A Metal-response element- 41.5 16 0.00054 21.8 2.1 52 108-165 7-62 (66)
160 3knv_A TNF receptor-associated 41.2 4.3 0.00015 28.6 -0.6 34 35-69 30-63 (141)
161 2jne_A Hypothetical protein YF 40.9 5.3 0.00018 26.5 -0.2 32 108-146 62-93 (101)
162 2d8v_A Zinc finger FYVE domain 40.9 8.4 0.00029 23.6 0.8 14 153-166 26-39 (67)
163 3htk_C E3 SUMO-protein ligase 40.4 16 0.00055 28.8 2.5 35 34-69 179-214 (267)
164 2ecn_A Ring finger protein 141 40.3 7.4 0.00025 23.3 0.5 26 108-135 16-41 (70)
165 2bay_A PRE-mRNA splicing facto 39.9 20 0.0007 21.1 2.4 33 36-69 3-36 (61)
166 2k16_A Transcription initiatio 39.5 13 0.00043 22.9 1.5 50 108-166 19-70 (75)
167 3vk6_A E3 ubiquitin-protein li 39.4 8.5 0.00029 25.7 0.6 52 108-159 2-62 (101)
168 2cs2_A Poly [ADP-ribose] polym 39.3 13 0.00045 26.1 1.7 29 108-136 28-69 (134)
169 1wff_A Riken cDNA 2810002D23 p 38.5 31 0.0011 22.2 3.2 12 184-195 72-83 (85)
170 1wev_A Riken cDNA 1110020M19; 38.2 17 0.00058 23.3 2.0 53 108-165 17-73 (88)
171 3ttc_A HYPF, transcriptional r 36.4 4.9 0.00017 35.9 -1.1 46 4-59 12-57 (657)
172 3vth_A Hydrogenase maturation 36.3 6.5 0.00022 35.8 -0.4 32 108-144 162-193 (761)
173 2dip_A Zinc finger SWIM domain 36.2 50 0.0017 21.7 4.1 36 129-165 27-65 (98)
174 1bor_A Transcription factor PM 35.1 15 0.00051 21.0 1.2 37 108-145 7-48 (56)
175 2puy_A PHD finger protein 21A; 34.9 68 0.0023 18.6 4.9 47 108-166 6-54 (60)
176 3hcs_A TNF receptor-associated 32.3 42 0.0014 23.8 3.6 41 135-176 19-62 (170)
177 2vut_I AREA, nitrogen regulato 31.7 42 0.0014 18.5 2.7 29 136-164 3-31 (43)
178 3d00_A Tungsten formylmethanof 31.7 7.2 0.00025 29.1 -0.8 26 134-165 163-188 (191)
179 3ql9_A Transcriptional regulat 30.8 50 0.0017 22.9 3.5 33 35-67 7-44 (129)
180 2e6r_A Jumonji/ARID domain-con 30.7 60 0.002 20.9 3.7 51 108-167 17-69 (92)
181 2ds5_A CLPX, ATP-dependent CLP 30.6 66 0.0023 18.4 3.5 29 136-164 13-42 (51)
182 2l0b_A E3 ubiquitin-protein li 30.5 20 0.0007 22.7 1.4 28 108-135 41-70 (91)
183 4g9i_A Hydrogenase maturation 30.2 8.2 0.00028 35.1 -0.8 32 108-144 157-188 (772)
184 2g6q_A Inhibitor of growth pro 29.4 45 0.0015 19.8 2.7 44 108-164 12-60 (62)
185 1ovx_A ATP-dependent CLP prote 29.4 66 0.0023 19.6 3.5 30 136-165 20-50 (67)
186 1znf_A 31ST zinc finger from X 29.0 24 0.00082 15.5 1.2 12 135-146 2-13 (27)
187 2vnf_A ING 4, P29ING4, inhibit 27.8 58 0.002 19.0 3.0 44 108-164 11-59 (60)
188 3j21_V 50S ribosomal protein L 27.2 36 0.0012 20.7 2.0 24 108-131 5-31 (66)
189 1wfh_A Zinc finger (AN1-like) 27.1 30 0.001 21.0 1.6 11 108-118 16-26 (64)
190 2ecj_A Tripartite motif-contai 26.9 68 0.0023 17.7 3.2 13 154-166 34-46 (58)
191 2ko5_A Ring finger protein Z; 26.7 98 0.0033 20.3 4.1 46 135-182 29-76 (99)
192 2lbm_A Transcriptional regulat 26.5 80 0.0027 22.2 4.0 33 35-67 13-50 (142)
193 1ard_A Yeast transcription fac 26.4 27 0.00093 15.6 1.2 12 135-146 3-14 (29)
194 2lo3_A SAGA-associated factor 26.2 26 0.00089 19.3 1.1 14 108-121 18-31 (44)
195 1vq8_U 50S ribosomal protein L 25.6 32 0.0011 21.0 1.5 15 108-122 4-18 (66)
196 2vje_B MDM4 protein; proto-onc 24.8 53 0.0018 19.1 2.5 32 38-69 9-42 (63)
197 1vq8_Z 50S ribosomal protein L 24.4 40 0.0014 21.4 1.9 35 108-151 28-62 (83)
198 4gat_A Nitrogen regulatory pro 24.2 69 0.0024 19.4 2.9 28 136-163 11-38 (66)
199 3c6w_A P28ING5, inhibitor of g 24.1 63 0.0021 18.9 2.7 44 108-164 10-58 (59)
200 2xb1_A Pygopus homolog 2, B-ce 23.7 52 0.0018 21.7 2.5 51 108-165 4-62 (105)
201 2m0e_A Zinc finger and BTB dom 23.6 38 0.0013 14.9 1.4 12 135-146 3-14 (29)
202 1paa_A Yeast transcription fac 23.6 33 0.0011 15.5 1.2 12 135-146 3-14 (30)
203 1wim_A KIAA0161 protein; ring 23.5 73 0.0025 20.0 3.2 32 135-166 6-39 (94)
204 2kvh_A Zinc finger and BTB dom 23.3 24 0.00081 15.7 0.5 12 37-48 4-15 (27)
205 1wg2_A Zinc finger (AN1-like) 22.4 51 0.0017 19.9 2.0 11 9-19 15-25 (64)
206 1klr_A Zinc finger Y-chromosom 22.3 37 0.0013 15.1 1.2 12 135-146 3-14 (30)
207 1wfp_A Zinc finger (AN1-like) 22.2 41 0.0014 21.0 1.6 11 108-118 26-36 (74)
208 2yql_A PHD finger protein 21A; 22.0 82 0.0028 17.9 2.9 47 5-63 5-53 (56)
209 2ku3_A Bromodomain-containing 21.9 1.4E+02 0.0048 18.1 4.1 48 108-166 17-68 (71)
210 2f42_A STIP1 homology and U-bo 21.6 84 0.0029 23.0 3.5 36 132-168 104-139 (179)
211 2lvu_A Zinc finger and BTB dom 26.6 20 0.00069 15.8 0.0 12 37-48 3-14 (26)
212 2ea5_A Cell growth regulator w 21.0 47 0.0016 19.8 1.7 12 108-119 47-58 (68)
213 1wen_A Inhibitor of growth fam 20.8 96 0.0033 18.8 3.1 44 8-64 15-63 (71)
214 1mm2_A MI2-beta; PHD, zinc fin 20.3 1.3E+02 0.0043 17.5 3.5 45 108-164 10-56 (61)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=6.2e-35 Score=225.81 Aligned_cols=169 Identities=27% Similarity=0.573 Sum_probs=137.9
Q ss_pred CCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCccc
Q 029230 6 GGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIV 85 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (197)
.++.++|.+|+++|..++.+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++|++++..+... ..+.
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~---~g~~ 80 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG---AGTL 80 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC---CCCC
T ss_pred CCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc---cccE
Confidence 4457899999999988888999999999999999999999999999999999999999999999987543221 1222
Q ss_pred CCCCccccc--------------CccccccccCCCCCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeee
Q 029230 86 KPEKLVENE--------------NAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIA 151 (197)
Q Consensus 86 ~~~~~~~~~--------------~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~ 151 (197)
..+++|+.. ....+...+ ++.++|++|+++|.+++.|.++++.||++||+|..|+++|.++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKV-GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCcccccccc-CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 233333311 111111111 23468999999999888899999999999999999999999889999
Q ss_pred eCCeeecHHHHHhHhcCCCCCCCCCCc
Q 029230 152 HEGKLYCKHHHIQLFREKGNYSQLESD 178 (197)
Q Consensus 152 ~dg~~yC~~cy~~~~~~k~~~~~~~~~ 178 (197)
.||++||+.||.++|+++|..|...+.
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 999999999999999999998886644
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=1e-33 Score=206.21 Aligned_cols=124 Identities=23% Similarity=0.492 Sum_probs=113.9
Q ss_pred CccccccccceecceeEEeCCccccccccccccccccccC--CCeeecCCeeeccccHHHHhhccCCcccccCCCCcccC
Q 029230 9 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL--SNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVK 86 (197)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 86 (197)
.++|.+|+++|.+.+.+.++|+.||++||+|..|+.+|.. ..|+.++|++||+.||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 5789999999997667999999999999999999999974 579999999999999999997
Q ss_pred CCCcccccCccccccccCCCCC--CCCCCCceeecCce-eeecCccccccccccCcCCCCCC-CCCeeeeCCeeecHHHH
Q 029230 87 PEKLVENENAQKVSNKFVGTRD--KCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTIS-PSNYIAHEGKLYCKHHH 162 (197)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~~~~~dg~~yC~~cy 162 (197)
+ +|.+|+++|.+.+. |.++++.||++||+|..|+++|. +..|+..+|++||..||
T Consensus 65 ---------------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~ 123 (131)
T 2xjy_A 65 ---------------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123 (131)
T ss_dssp ---------------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGH
T ss_pred ---------------------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHH
Confidence 6 89999999997664 67999999999999999999995 66799999999999999
Q ss_pred HhHhcCCC
Q 029230 163 IQLFREKG 170 (197)
Q Consensus 163 ~~~~~~k~ 170 (197)
.++|+++|
T Consensus 124 ~~~~~~~~ 131 (131)
T 2xjy_A 124 YEWTKING 131 (131)
T ss_dssp HHHHHHHC
T ss_pred HHHhhccC
Confidence 99998765
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.98 E-value=1.1e-32 Score=199.61 Aligned_cols=121 Identities=21% Similarity=0.540 Sum_probs=113.1
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCcccCC
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKP 87 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~ 87 (197)
..++|.+|+++|..++.+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------------------
Confidence 35899999999998889999999999999999999999998899999999999999999997
Q ss_pred CCcccccCccccccccCCCCCCCCCCCceeecCc-eeeecCcccc--ccccccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 88 EKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTE-KVSVNGAAYH--RSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e-~v~~~g~~~H--~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
++|++|+++|.+++ .|.++++.|| ++||+|..|+++|.+..|+..||++||..+|.+
T Consensus 64 --------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 64 --------------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp --------------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred --------------------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence 99999999999754 4789999999 999999999999998889999999999988887
Q ss_pred Hh
Q 029230 165 LF 166 (197)
Q Consensus 165 ~~ 166 (197)
+|
T Consensus 124 ~f 125 (126)
T 2xqn_T 124 RM 125 (126)
T ss_dssp SC
T ss_pred hc
Confidence 65
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=4.5e-32 Score=209.11 Aligned_cols=129 Identities=22% Similarity=0.524 Sum_probs=112.8
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccC--CCeeecCCeeeccccHHHHhhccCCcccccCCCCcc
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL--SNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKI 84 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 84 (197)
...++|.+|+++|...+++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--------------- 67 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS---------------
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc---------------
Confidence 346899999999997667999999999999999999999986 689999999999999999997
Q ss_pred cCCCCcccccCccccccccCCCCC--CCCCCCceeecCce-eeecCccccccccccCcCCCCCC-CCCeeeeCCeeecHH
Q 029230 85 VKPEKLVENENAQKVSNKFVGTRD--KCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTIS-PSNYIAHEGKLYCKH 160 (197)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~~~~~dg~~yC~~ 160 (197)
+ +|.+|+++|.+.+. |.++++.||++||+|..|+++|. +..|+..++++||..
T Consensus 68 -----------------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~ 124 (188)
T 1rut_X 68 -----------------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124 (188)
T ss_dssp -----------------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGG
T ss_pred -----------------------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHH
Confidence 5 79999999998775 57999999999999999999996 567999999999999
Q ss_pred HHHhHhcCCCCCC
Q 029230 161 HHIQLFREKGNYS 173 (197)
Q Consensus 161 cy~~~~~~k~~~~ 173 (197)
||.++|++++...
T Consensus 125 c~~~~~~~~~~~~ 137 (188)
T 1rut_X 125 DRPTALINGHLNS 137 (188)
T ss_dssp GCCTTTC------
T ss_pred HHHHHhccccccc
Confidence 9999999999643
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.97 E-value=7.9e-31 Score=198.90 Aligned_cols=124 Identities=25% Similarity=0.515 Sum_probs=109.8
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCcccC
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVK 86 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 86 (197)
.+.++|.+|+++|...+++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccc-----------------
Confidence 356899999999997677899999999999999999999998775 79999999999999998
Q ss_pred CCCcccccCccccccccCCCCCCCCCCCceeecCcee-eecCccccccccccCcCCCCCC-CCCee-eeCCeeecHHHHH
Q 029230 87 PEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKV-SVNGAAYHRSCFKCSHGGCTIS-PSNYI-AHEGKLYCKHHHI 163 (197)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v-~~~g~~~H~~CF~C~~C~~~l~-~~~~~-~~dg~~yC~~cy~ 163 (197)
++|.+|+++|.+.+.+ .++++.||++||+|..|+++|. +..|+ ..||++||+.||.
T Consensus 66 ---------------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 66 ---------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp ---------------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred ---------------------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHH
Confidence 9999999999987764 6999999999999999999998 44565 4689999999999
Q ss_pred hHhcCC
Q 029230 164 QLFREK 169 (197)
Q Consensus 164 ~~~~~k 169 (197)
++++..
T Consensus 125 ~~~~~~ 130 (169)
T 2rgt_A 125 TAKQGG 130 (169)
T ss_dssp HHHHCC
T ss_pred HHhhcc
Confidence 998764
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.97 E-value=1e-30 Score=200.57 Aligned_cols=126 Identities=25% Similarity=0.485 Sum_probs=111.1
Q ss_pred CCCCCCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCC
Q 029230 2 ASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT 81 (197)
Q Consensus 2 ~~~~~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~ 81 (197)
++......++|.+|+++|...+++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 53 ~~~~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~------------ 119 (182)
T 2jtn_A 53 GSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG------------ 119 (182)
T ss_dssp CCCCCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS------------
T ss_pred ccCCCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc------------
Confidence 34445667999999999997777899999999999999999999998776 68999999999999997
Q ss_pred CcccCCCCcccccCccccccccCCCCCCCCCCCceeecCce-eeecCccccccccccCcCCCCCCC-CCee-eeCCeeec
Q 029230 82 PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISP-SNYI-AHEGKLYC 158 (197)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~~-~~~~-~~dg~~yC 158 (197)
++|.+|+++|.+.+. +.++++.||++||+|..|+++|.. ..|+ ..||++||
T Consensus 120 --------------------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC 173 (182)
T 2jtn_A 120 --------------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC 173 (182)
T ss_dssp --------------------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEEC
T ss_pred --------------------------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEEC
Confidence 999999999998775 469999999999999999999984 4565 46899999
Q ss_pred HHHHHhHh
Q 029230 159 KHHHIQLF 166 (197)
Q Consensus 159 ~~cy~~~~ 166 (197)
..||.++.
T Consensus 174 ~~cy~~~~ 181 (182)
T 2jtn_A 174 KADYETAK 181 (182)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998763
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.94 E-value=1.5e-27 Score=165.98 Aligned_cols=98 Identities=24% Similarity=0.610 Sum_probs=90.2
Q ss_pred CCCCccccccccceec-ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCcc
Q 029230 6 GGTQQKCMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKI 84 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~-~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 84 (197)
+...++|.+|+++|.. ++.+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++|+
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~--------------- 66 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS--------------- 66 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC---------------
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC---------------
Confidence 3456899999999975 788999999999999999999999998889999999999999999887
Q ss_pred cCCCCcccccCccccccccCCCCCCCCCCCceeecCc-eeeecCccccccccccCcCC
Q 029230 85 VKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTE-KVSVNGAAYHRSCFKCSHGG 141 (197)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~ 141 (197)
++|.+|+++|.+++ .|.++|+.||++||+|..|+
T Consensus 67 -----------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 -----------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -----------------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred -----------------------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 99999999999765 47899999999999999986
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=1.1e-25 Score=161.76 Aligned_cols=113 Identities=19% Similarity=0.327 Sum_probs=100.1
Q ss_pred CCCccccccccceecceeEEeCCcccccccccccccccccc--CCCeeecCCeeeccccHHHHhhccCCcccccCCCCcc
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLK--LSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKI 84 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 84 (197)
...++|.+|+++|...+++.++++.||++||+|..|+.+|. +..|+.++|++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--------------- 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---------------
Confidence 45689999999999777799999999999999999999997 3579999999999999999997
Q ss_pred cCCCCcccccCccccccccCCCCC--CCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHH
Q 029230 85 VKPEKLVENENAQKVSNKFVGTRD--KCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHH 162 (197)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy 162 (197)
+ +|++|+++|.+.+ |++.|+ ..|.++.|+.++++|||..||
T Consensus 68 -----------------------~~~~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~ 110 (122)
T 1m3v_A 68 -----------------------NSGAGGSGGHMGSGGD-VMVVGE-------------PTLMGGEFGDEDERLITRLEN 110 (122)
T ss_dssp -----------------------CCCSSSCSSCCSCCEE-SSSSSS-------------SSCCSCTTCCTTCCCCEECTT
T ss_pred -----------------------CCCccccCCCCcCchh-eEEcCC-------------cCCCCCccEecCCEeEccCcc
Confidence 6 9999999998654 566663 367888999999999999999
Q ss_pred HhHhcCCCC
Q 029230 163 IQLFREKGN 171 (197)
Q Consensus 163 ~~~~~~k~~ 171 (197)
.+++..+++
T Consensus 111 ~~~~~~~g~ 119 (122)
T 1m3v_A 111 TQFDAANGI 119 (122)
T ss_dssp TTTTCCSCC
T ss_pred hhchhhcCC
Confidence 999988875
No 9
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=1.2e-22 Score=135.23 Aligned_cols=79 Identities=18% Similarity=0.451 Sum_probs=73.7
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecCceeeecCccccccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSC 134 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~C 134 (197)
+|++||+.||.++++ ++|++|+++|.+ +.|.++++.||++|
T Consensus 1 gg~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~-~~v~a~~~~~H~~C 41 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA--------------------------------------PRCARCSKTLTQ-GGVTYRDQPWHREC 41 (80)
T ss_dssp CCCCSCCCCCCCCSS--------------------------------------CCCTTTCCCCCS-CCEESSSSEECTTT
T ss_pred CCcEEcHHHHccccC--------------------------------------CcCCCCCCEecC-cEEEECCchhhhhh
Confidence 588999999998886 899999999985 57899999999999
Q ss_pred cccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 135 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
|+|..|+++|.++.|+..|++|||+.||.++|+++|+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 99999999999889999999999999999999999964
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=1.2e-22 Score=135.34 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=73.6
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecCceeeecCccccccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSC 134 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~C 134 (197)
+|++||+.||.++++ ++|++|+++|.+ +.|.++++.||++|
T Consensus 1 gg~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~~-~~v~a~~~~~H~~C 41 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS--------------------------------------PKCGGCNRPVLE-NYLSAMDTVWHPEC 41 (80)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------------CBCTTTCCBCCS-SCEEETTEEECTTT
T ss_pred CCCccchhHHhhhcC--------------------------------------CccccCCCeecc-eeEEECCCeEecCc
Confidence 478999999988886 899999999995 66899999999999
Q ss_pred cccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 135 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
|+|..|+++|.++.|+..+++|||+.||.++|+++|..
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 99999999999888999999999999999999999963
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=1.6e-22 Score=135.31 Aligned_cols=80 Identities=20% Similarity=0.426 Sum_probs=74.1
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecCce-eeecCcccccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEK-VSVNGAAYHRS 133 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~-v~~~g~~~H~~ 133 (197)
++.+||+.||.++++ ++|++|+++|.+++. |.++++.||++
T Consensus 1 ~~~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~ 42 (82)
T 1x63_A 1 GSSGSSGKCTTREDS--------------------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKD 42 (82)
T ss_dssp CCSCCCCCCCSCCCS--------------------------------------CBCSSSCCBCCSSSCEEECSSCEEETT
T ss_pred CCCcCchhHHccccC--------------------------------------CcCccCCcccccCceEEEECccccccc
Confidence 467999999988876 899999999998765 78999999999
Q ss_pred ccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 134 CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 134 CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
||+|..|+++|.++.|+..++++||+.||.++|++++++
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 999999999999989999999999999999999999975
No 12
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=1.7e-22 Score=143.47 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=90.6
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccC--CCeeecCCeeeccccHHHHhhccCCcccccCCCCccc
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL--SNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIV 85 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (197)
+.++|.+|+++|...+.+.++++.||+.||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~---------------- 65 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG---------------- 65 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT----------------
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC----------------
Confidence 46899999999997778999999999999999999999985 589999999999999999998
Q ss_pred CCCCcccccCccccccccCCCCCCCCCCCceeecCceeeecCccccccccccCcCCCC-CCCCCeeeeCCeeecHHHHHh
Q 029230 86 KPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCT-ISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~-l~~~~~~~~dg~~yC~~cy~~ 164 (197)
++|..|.. ++.+. |+.+ |.++.|+..|++|||..||.+
T Consensus 66 ----------------------~~c~~c~~----~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 66 ----------------------SGGHMGSG----GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp ----------------------SCCSSCBS----CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred ----------------------cccCcCCC----CceeE---------------cCCccCCCCeeEEcCCEeecchhhhc
Confidence 77777752 22111 2344 667799999999999999999
Q ss_pred HhcCCCCC
Q 029230 165 LFREKGNY 172 (197)
Q Consensus 165 ~~~~k~~~ 172 (197)
+.+.+++-
T Consensus 105 ~~~~~g~~ 112 (114)
T 1j2o_A 105 FDAANGID 112 (114)
T ss_dssp CCCTTSSC
T ss_pred cccccCCC
Confidence 88877653
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.8e-23 Score=137.14 Aligned_cols=80 Identities=15% Similarity=0.440 Sum_probs=73.4
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecC-ceeeecCcccccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPT-EKVSVNGAAYHRS 133 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~-e~v~~~g~~~H~~ 133 (197)
+|++||+.||.++|+ ++|++|+++|.+. ..|.++++.||++
T Consensus 1 ~g~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~ 42 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA--------------------------------------NTCAECQQLIGHDSRELFYEDRHFHEG 42 (82)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTT
T ss_pred CCceechhHhCcccC--------------------------------------CcCccCCCccccCcEEEEeCCcccccc
Confidence 589999999998887 8999999999954 4467899999999
Q ss_pred ccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 134 CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 134 CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
||+|..|+++|.++.|+..+++|||+.||.++|+++|..
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 999999999999989999999999999999999999963
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=9.5e-22 Score=131.24 Aligned_cols=64 Identities=19% Similarity=0.469 Sum_probs=58.8
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeee-CCeeecHHHHHhHhcCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAH-EGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~-dg~~yC~~cy~~~~~~k~~~ 172 (197)
++|++|+++|. ++.|.++++.||++||+|..|+++|.+..|+.. ||+|||+.||.++|+++|..
T Consensus 16 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 16 EKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 89999999998 456889999999999999999999998888876 79999999999999999963
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=5.8e-21 Score=127.35 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=70.0
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecCceeeecCccccccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSC 134 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~C 134 (197)
++.+||+.||.++|+ ++|++|+++|. ++.|.++++.||++|
T Consensus 1 g~~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~C 41 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG--------------------------------------EFCHGCSLLMT-GPFMVAGEFKYHPEC 41 (81)
T ss_dssp CCCCCCCCCSSCCSS--------------------------------------CBCTTTCCBCC-SCCBCCTTCCBCTTS
T ss_pred CCCccchhHHhhhcC--------------------------------------CcCccCCCCcC-ceEEEECCceecccc
Confidence 367999999999887 89999999999 666889999999999
Q ss_pred cccCcCCCCCCC-CCee-eeCCeeecHHHHHhHhcCCCC
Q 029230 135 FKCSHGGCTISP-SNYI-AHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 135 F~C~~C~~~l~~-~~~~-~~dg~~yC~~cy~~~~~~k~~ 171 (197)
|+|..|+++|.. ..|. ..+++|||+.||.++|+++++
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 999999999974 5677 489999999999999998874
No 16
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-21 Score=126.51 Aligned_cols=73 Identities=19% Similarity=0.554 Sum_probs=66.8
Q ss_pred CCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeec----CceeeecCccc
Q 029230 55 EGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYP----TEKVSVNGAAY 130 (197)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~----~e~v~~~g~~~ 130 (197)
++++||+.||.++++ ++|++|+++|.+ .+.|.++++.|
T Consensus 1 g~~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~~g~~~~~~~a~~~~~ 42 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA--------------------------------------KKCAGCKNPITGFGKGSSVVAYEGQSW 42 (77)
T ss_dssp CCSSCCTTCCCSCCC--------------------------------------CCCSSSCCCCCCCSSCCCEEEETTEEE
T ss_pred CCCeEchhHhchhhC--------------------------------------ccCcccCCcccCCCCCceeEEECccee
Confidence 478999999998886 899999999994 36688999999
Q ss_pred cccccccCcCCCCCCCCCeeeeCCeeecHHHHHhH
Q 029230 131 HRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 131 H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~ 165 (197)
|++||+|..|+++|.+..|+..+|+|||+.||.++
T Consensus 43 H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 43 HDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp ETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 99999999999999998899999999999999763
No 17
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=6.3e-20 Score=125.04 Aligned_cols=74 Identities=41% Similarity=0.816 Sum_probs=69.6
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCchh
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLE 180 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~~~ 180 (197)
.++|++|+++|.+++.|.++++.||++||+|..|+++|..+.|+..|+++||+.||.++|+++|+++.++....
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~ 88 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGP 88 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCC
Confidence 38999999999988889999999999999999999999988899999999999999999999999999988753
No 18
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=8.7e-20 Score=120.19 Aligned_cols=69 Identities=36% Similarity=0.680 Sum_probs=64.1
Q ss_pred cCCCCCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecH-HHHHhHhcCCCC
Q 029230 103 FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK-HHHIQLFREKGN 171 (197)
Q Consensus 103 ~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~-~cy~~~~~~k~~ 171 (197)
|.+..++|++|+++|.+++.|.++++.||++||+|..|+++|.+..|+..|++|||+ .||.++|+++|.
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCS
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccC
Confidence 444568999999999988889999999999999999999999998899999999999 799999999996
No 19
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.9e-19 Score=118.50 Aligned_cols=70 Identities=36% Similarity=0.658 Sum_probs=65.5
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecH-HHHHhHhcCCCCCCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCK-HHHIQLFREKGNYSQLES 177 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~-~cy~~~~~~k~~~~~~~~ 177 (197)
|+|++|+++|.+++.|.++|+.||++||+|..|+++|.++.|+..||++||+ .||.++|+++|..|.+..
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 5799999999988889999999999999999999999998999999999999 699999999999998654
No 20
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.77 E-value=1.3e-19 Score=120.77 Aligned_cols=71 Identities=31% Similarity=0.626 Sum_probs=58.2
Q ss_pred CCCCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCC
Q 029230 105 GTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQL 175 (197)
Q Consensus 105 ~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~ 175 (197)
+..++|.+|+++|.+++.|.++++.||++||+|..|+++|..+.|+..++++||+.||.++|+++|..|..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCC
Confidence 34589999999999888899999999999999999999999888999999999999999999999986653
No 21
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=2.8e-19 Score=118.94 Aligned_cols=65 Identities=23% Similarity=0.556 Sum_probs=61.1
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
.++|++|+++|++++.|.++++.||++||+|..|+++|.+ .|+.+||+|||+.||.++|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 4899999999998888999999999999999999999986 7999999999999999999999964
No 22
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=9e-19 Score=119.04 Aligned_cols=65 Identities=20% Similarity=0.478 Sum_probs=60.9
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
.++|++|+++|. ++.|.++|+.||++||+|..|+++|.+..|+..++++||+.||.++|+++|+.
T Consensus 25 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 489999999996 67789999999999999999999999888999999999999999999999964
No 23
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.2e-18 Score=112.52 Aligned_cols=64 Identities=17% Similarity=0.494 Sum_probs=60.1
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|++|+++|.+ +.|.++++.||++||+|..|+++|.+..|+..|+++||+.||.++|+++|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred cCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 3899999999984 678999999999999999999999988999999999999999999999985
No 24
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=4.7e-19 Score=116.69 Aligned_cols=68 Identities=13% Similarity=0.473 Sum_probs=63.2
Q ss_pred CCCCCCCceeec---CceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCC
Q 029230 108 DKCVGCDRTVYP---TEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQL 175 (197)
Q Consensus 108 ~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~ 175 (197)
++|++|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+..|++|||+.||.++|+++|..+++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~sg 76 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSSG 76 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCCC
Confidence 899999999995 36688999999999999999999999888999999999999999999999987754
No 25
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=3.5e-19 Score=118.68 Aligned_cols=77 Identities=21% Similarity=0.493 Sum_probs=66.8
Q ss_pred CeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCceeecCceeeecCcccccccc
Q 029230 56 GVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCF 135 (197)
Q Consensus 56 g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF 135 (197)
..+||+.||.++|+ ++|++|+++|. ++.|.++++.||++||
T Consensus 2 ~~~yC~~dy~~~~~--------------------------------------~~C~~C~~~I~-~~~v~a~~~~wH~~CF 42 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG--------------------------------------TRCFSCDQFIE-GEVVSALGKTYHPDCF 42 (81)
T ss_dssp CCCCCCSCGGGSCC--------------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTS
T ss_pred CCCcchHHHHhHhC--------------------------------------CcCccccCEec-cceEEECCceeCccCC
Confidence 46899999999997 89999999999 5678999999999999
Q ss_pred ccCcCCCCCCCCCeeeeCC-eeecHHHHHhHhcCCCC
Q 029230 136 KCSHGGCTISPSNYIAHEG-KLYCKHHHIQLFREKGN 171 (197)
Q Consensus 136 ~C~~C~~~l~~~~~~~~dg-~~yC~~cy~~~~~~k~~ 171 (197)
+|..|+++|..+.++..++ .+||..||.++++..++
T Consensus 43 ~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~s 79 (81)
T 1v6g_A 43 VCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGPS 79 (81)
T ss_dssp SCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCCC
T ss_pred ccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCCC
Confidence 9999999998766666555 57999999988876653
No 26
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.76 E-value=3e-19 Score=119.03 Aligned_cols=66 Identities=29% Similarity=0.747 Sum_probs=58.1
Q ss_pred CCCCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 4 ~~~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
++.+..++|.+|+++|..++.+.++++.||++||+|..|+++|....|+.+++++||+.||.++|+
T Consensus 2 ~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp ------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 356678999999999988889999999999999999999999998899999999999999999998
No 27
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.3e-18 Score=113.31 Aligned_cols=65 Identities=25% Similarity=0.569 Sum_probs=61.1
Q ss_pred CCCCCCCceeecC-ceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 108 DKCVGCDRTVYPT-EKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 108 ~~C~~C~~~I~~~-e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
++|++|+++|.++ +.|.++|+.||++||+|..|+++|.++.|+..+|++||+.||.++|+++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 8999999999985 5678999999999999999999999989999999999999999999999964
No 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.75 E-value=8.4e-19 Score=112.31 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=58.2
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREK 169 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k 169 (197)
++|++|+++|. ++.|.++|+.||++||+|..|+++|.++.|+..||++||+.||.++|++|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 89999999999 67789999999999999999999999989999999999999999999986
No 29
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.8e-18 Score=111.99 Aligned_cols=64 Identities=20% Similarity=0.514 Sum_probs=60.1
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
++|++|+++|.+ +.|.++++.||++||+|..|+++|.+..|+..|+++||+.||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 899999999984 5689999999999999999999999889999999999999999999999963
No 30
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.3e-18 Score=114.54 Aligned_cols=60 Identities=33% Similarity=0.853 Sum_probs=57.2
Q ss_pred ccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeecc-ccHHHHhh
Q 029230 10 QKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCR-PHFDQLFK 69 (197)
Q Consensus 10 ~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~c~~~~~~ 69 (197)
|+|.+|+++|..++.+.++|+.||++||+|..|+++|.++.|+.++|.+||+ .||.++|+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 5899999999988899999999999999999999999988999999999999 69999998
No 31
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=2.1e-18 Score=112.21 Aligned_cols=65 Identities=20% Similarity=0.534 Sum_probs=61.1
Q ss_pred CCCCCCCceeecCc-eeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCC
Q 029230 108 DKCVGCDRTVYPTE-KVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNY 172 (197)
Q Consensus 108 ~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~ 172 (197)
++|++|+++|.+++ .|.++|+.||++||+|..|+++|.++.|+..||++||+.||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 89999999999875 578999999999999999999999989999999999999999999999964
No 32
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.8e-18 Score=113.84 Aligned_cols=70 Identities=33% Similarity=0.743 Sum_probs=65.0
Q ss_pred CCCCCCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeecc-ccHHHHhhcc
Q 029230 2 ASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCR-PHFDQLFKRT 71 (197)
Q Consensus 2 ~~~~~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~c~~~~~~~~ 71 (197)
|+.++...++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+++
T Consensus 2 s~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred ccccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccc
Confidence 567788899999999999988899999999999999999999999988999999999999 7999999843
No 33
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.7e-18 Score=114.17 Aligned_cols=65 Identities=31% Similarity=0.598 Sum_probs=59.0
Q ss_pred CCCCCCCCceeecCce-eeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|++|+++|.+.+. +.++|+.||++||+|..|+++|.++.|+..||++||+.||.++|+++|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4899999999997665 5799999999999999999999988899999999999999999999986
No 34
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.7e-18 Score=118.91 Aligned_cols=73 Identities=16% Similarity=0.388 Sum_probs=68.0
Q ss_pred CCCCCCCCceeec-CceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCch
Q 029230 107 RDKCVGCDRTVYP-TEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDL 179 (197)
Q Consensus 107 ~~~C~~C~~~I~~-~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~~ 179 (197)
.++|++|+++|++ ++.|.++|+.||++||+|..|+++|.+..|+..||++||+.||.++|+++|..|...+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCS
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcccc
Confidence 3899999999985 667889999999999999999999998889999999999999999999999999998874
No 35
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=8.6e-18 Score=113.92 Aligned_cols=64 Identities=22% Similarity=0.445 Sum_probs=59.9
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|.+|+++|++ +.|.++++.||++||+|..|+++|.++.|+..|+++||+.||.++|++||.
T Consensus 25 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4899999999995 668899999999999999999999988899999999999999999999984
No 36
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.2e-18 Score=121.29 Aligned_cols=68 Identities=18% Similarity=0.443 Sum_probs=62.6
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCC--CCeeeeCCeeecHHHHHhHhcCCCCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISP--SNYIAHEGKLYCKHHHIQLFREKGNYSQ 174 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~--~~~~~~dg~~yC~~cy~~~~~~k~~~~~ 174 (197)
.++|++|+++|.+.+.|.++++.||++||+|..|+++|.. ..|+.+||+|||+.||.++|+++|..|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 4899999999997777899999999999999999999984 5899999999999999999999987664
No 37
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=122.64 Aligned_cols=73 Identities=19% Similarity=0.358 Sum_probs=69.3
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCchh
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLE 180 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~~~ 180 (197)
++|++|+++|.+++.|.++|+.||++||+|..|+++|.+..|+.+||+|||+.||.++|+++|..|...+.+.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE 76 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTT
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcC
Confidence 8999999999988888999999999999999999999988999999999999999999999999999988853
No 38
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.1e-18 Score=111.48 Aligned_cols=64 Identities=16% Similarity=0.498 Sum_probs=59.0
Q ss_pred CCCCCCCCceeec---CceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCC
Q 029230 107 RDKCVGCDRTVYP---TEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 170 (197)
Q Consensus 107 ~~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~ 170 (197)
.++|++|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+.+||+|||+.||.++|++++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 3899999999995 356789999999999999999999999899999999999999999999876
No 39
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=8.7e-18 Score=108.77 Aligned_cols=64 Identities=14% Similarity=0.422 Sum_probs=59.5
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|++|+++|. ++.|.++++.||++||+|..|+++|....|+..||++||+.||.++|+++..
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 489999999998 4678999999999999999999999998899999999999999999998764
No 40
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=5.3e-18 Score=121.57 Aligned_cols=74 Identities=19% Similarity=0.431 Sum_probs=68.0
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCC--CCCeeeeCCeeecHHHHHhHhcC--CCCCCCCCCchh
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTIS--PSNYIAHEGKLYCKHHHIQLFRE--KGNYSQLESDLE 180 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~~~~~dg~~yC~~cy~~~~~~--k~~~~~~~~~~~ 180 (197)
.++|++|+++|.+.+.|.++++.||++||+|..|+++|. +..|+.+||+|||+.||.++|++ +|..|...+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 389999999999877789999999999999999999997 46799999999999999999999 999999888754
No 41
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=3e-18 Score=113.61 Aligned_cols=64 Identities=17% Similarity=0.409 Sum_probs=59.7
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|++|+++|++ +.|.++++.||++||+|..|+++|.+..|+.+|+++||+.||.++|++++.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4899999999995 578999999999999999999999887899999999999999999999974
No 42
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.8e-17 Score=108.98 Aligned_cols=63 Identities=19% Similarity=0.432 Sum_probs=57.7
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 171 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~ 171 (197)
.++|++|+++|. ++.|.++|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++++
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 389999999999 66789999999999999999999999865 5999999999999999999875
No 43
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.8e-17 Score=106.97 Aligned_cols=62 Identities=23% Similarity=0.613 Sum_probs=58.3
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 45689999999998 678999999999999999999999998899999999999999999998
No 44
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.69 E-value=5.9e-18 Score=121.48 Aligned_cols=71 Identities=21% Similarity=0.479 Sum_probs=63.4
Q ss_pred CCCCCCCceeecCce-eeecCccccccccccCcCCCCCC-CCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCc
Q 029230 108 DKCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTIS-PSNYIAHEGKLYCKHHHIQLFREKGNYSQLESD 178 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~ 178 (197)
++|++|+++|.+.+. |.++++.||++||+|..|+++|. +..|+..++++||..||.++|+++|.++++...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 389999999998665 57999999999999999999995 557999999999999999999999998876643
No 45
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.69 E-value=1.7e-17 Score=126.74 Aligned_cols=72 Identities=22% Similarity=0.465 Sum_probs=66.0
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCch
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDL 179 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~~ 179 (197)
.++|.+|+++|...+.|.++|+.||++||+|..|+++|.+..| .+||+|||+.||.++|+++|..|...+.+
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCS
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCC
Confidence 3899999999997766789999999999999999999998665 79999999999999999999999988764
No 46
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.5e-17 Score=109.48 Aligned_cols=65 Identities=25% Similarity=0.587 Sum_probs=59.5
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
...++|.+|+++|..++.|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C 77 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCC
Confidence 456899999999998899999999999999999999999985 69999999999999999998443
No 47
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.3e-17 Score=112.20 Aligned_cols=72 Identities=42% Similarity=1.038 Sum_probs=65.5
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccC
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFE 79 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~ 79 (197)
..++|.+|+++|...+.|.++++.||++||+|..|+++|....|+.+++++||+.||.++|+++++.+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 468999999999987899999999999999999999999988899999999999999999998776655554
No 48
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.6e-17 Score=106.36 Aligned_cols=61 Identities=23% Similarity=0.504 Sum_probs=56.5
Q ss_pred CCCCCCCCceeecCc-eeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhc
Q 029230 107 RDKCVGCDRTVYPTE-KVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFR 167 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~ 167 (197)
.++|++|+++|.+.+ .|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 389999999999754 5789999999999999999999988889999999999999999995
No 49
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.7e-17 Score=105.71 Aligned_cols=65 Identities=25% Similarity=0.592 Sum_probs=59.3
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
...++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 45689999999998 677999999999999999999999998899999999999999999998433
No 50
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.67 E-value=5e-17 Score=105.48 Aligned_cols=60 Identities=33% Similarity=0.705 Sum_probs=56.4
Q ss_pred CCCCCCCceeecCce-eeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhc
Q 029230 108 DKCVGCDRTVYPTEK-VSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFR 167 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~ 167 (197)
++|++|+++|.+.+. |.++|+.||++||+|..|+++|.++.|+..||++||+.||.++|+
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 899999999998886 469999999999999999999998889999999999999999986
No 51
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2.3e-17 Score=109.34 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=60.2
Q ss_pred CCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 6 GGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
....++|.+|+++|. +++|.++++.||++||+|..|+++|....|+.+++++||+.||.++|++++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 345689999999999 578999999999999999999999998889999999999999999998654
No 52
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.6e-17 Score=110.85 Aligned_cols=64 Identities=34% Similarity=0.708 Sum_probs=58.2
Q ss_pred CCCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCee--eeCCeeecHHHHHhHhcCC
Q 029230 106 TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYI--AHEGKLYCKHHHIQLFREK 169 (197)
Q Consensus 106 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~--~~dg~~yC~~cy~~~~~~k 169 (197)
+.++|.+|+++|++++.|.++++.||++||+|..|+++|....|+ ..||++||+.||.++|+.-
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 358999999999988889999999999999999999999998887 4799999999999988653
No 53
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.7e-17 Score=106.23 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=56.2
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCC-CCCeeeeCCeeecHHHHHhHhcCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTIS-PSNYIAHEGKLYCKHHHIQLFREK 169 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~-~~~~~~~dg~~yC~~cy~~~~~~k 169 (197)
++|++|+++|.+ +.|.++|+.||++||+|..|+++|. +..|+..++++||..||.++++.+
T Consensus 6 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 899999999985 6688999999999999999999998 778999999999999999987654
No 54
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.1e-17 Score=107.87 Aligned_cols=62 Identities=19% Similarity=0.457 Sum_probs=57.8
Q ss_pred CCccccccccceec---ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 8 TQQKCMACDKTVYL---VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 8 ~~~~C~~C~~~I~~---~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
..++|.+|+++|.+ .+.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 46899999999993 488999999999999999999999998899999999999999999987
No 55
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.67 E-value=3.1e-17 Score=104.89 Aligned_cols=62 Identities=24% Similarity=0.527 Sum_probs=58.3
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhc
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKR 70 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (197)
..++|.+|+++|. ++.+.++|+.||++||+|..|+++|.+..|+.++|.+||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 4689999999999 8889999999999999999999999988999999999999999999873
No 56
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.6e-17 Score=104.89 Aligned_cols=65 Identities=25% Similarity=0.503 Sum_probs=60.1
Q ss_pred CCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhcc
Q 029230 6 GGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT 71 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 71 (197)
+++.++|..|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++.
T Consensus 2 s~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 2 SSGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 356789999999998 68899999999999999999999999989999999999999999999843
No 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=7.8e-17 Score=109.38 Aligned_cols=65 Identities=26% Similarity=0.585 Sum_probs=60.0
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
...++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCC
Confidence 45689999999997 888999999999999999999999998899999999999999999998544
No 58
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=7e-17 Score=104.94 Aligned_cols=65 Identities=29% Similarity=0.619 Sum_probs=59.6
Q ss_pred CCccccccccceecc-eeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 8 TQQKCMACDKTVYLV-DKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~-~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
..++|.+|+++|... +++.++|+.||++||+|..|+++|....|+.+++++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcC
Confidence 468999999999974 78999999999999999999999999899999999999999999998443
No 59
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=9.3e-17 Score=104.35 Aligned_cols=65 Identities=22% Similarity=0.572 Sum_probs=59.6
Q ss_pred CCccccccccceecc-eeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 8 TQQKCMACDKTVYLV-DKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~-~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
..++|.+|+++|... ..+.++|+.||++||+|..|+++|.++.|+.+++.+||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCC
Confidence 458999999999975 57999999999999999999999999999999999999999999998443
No 60
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.66 E-value=1.2e-16 Score=115.60 Aligned_cols=72 Identities=17% Similarity=0.406 Sum_probs=66.4
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCC--CCCeeeeCCeeecHHHHHhHhcC--CCCCCCCCCch
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTIS--PSNYIAHEGKLYCKHHHIQLFRE--KGNYSQLESDL 179 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~~~~~dg~~yC~~cy~~~~~~--k~~~~~~~~~~ 179 (197)
++|++|+++|.+.+.|.++|+.||++||+|..|+++|. +..|+.+||+|||+.||.++|++ +|..|...+..
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 78999999999776688999999999999999999996 36899999999999999999999 99999988764
No 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.3e-17 Score=105.62 Aligned_cols=65 Identities=17% Similarity=0.413 Sum_probs=59.2
Q ss_pred CCCCccccccccceec---ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhc
Q 029230 6 GGTQQKCMACDKTVYL---VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKR 70 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~---~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (197)
+...++|.+|+++|.. .+++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 2 SSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp CSCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 3457899999999994 3779999999999999999999999988999999999999999999874
No 62
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.2e-17 Score=106.25 Aligned_cols=67 Identities=25% Similarity=0.563 Sum_probs=60.0
Q ss_pred CCCCCccccccccceec-ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhcc
Q 029230 5 FGGTQQKCMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT 71 (197)
Q Consensus 5 ~~~~~~~C~~C~~~I~~-~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 71 (197)
.....++|.+|+++|.. +..+.++|+.||++||+|..|+++|.++.|+.++|++||+.||.++|+++
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~ 74 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 74 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC
T ss_pred cCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcc
Confidence 44567899999999985 45578999999999999999999999889999999999999999999843
No 63
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.2e-16 Score=108.22 Aligned_cols=65 Identities=25% Similarity=0.484 Sum_probs=59.5
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
...++|.+|+++|. ++.+.++++.||++||+|..|+++|....|+.+++.+||+.||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 45578999999999 588999999999999999999999998899999999999999999998544
No 64
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=114.93 Aligned_cols=61 Identities=21% Similarity=0.539 Sum_probs=56.4
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCC--CCCeeeeCCeeecHHHHHhHhc
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTIS--PSNYIAHEGKLYCKHHHIQLFR 167 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~~~~~dg~~yC~~cy~~~~~ 167 (197)
.++|++|+++|+..+.|.++|+.||++||+|..|+++|. +..|+.+||+|||+.||.++||
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 389999999999776789999999999999999999997 4689999999999999999986
No 65
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.64 E-value=2.3e-16 Score=119.12 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=65.5
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCCCCCch
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDL 179 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~~~~~~ 179 (197)
.++|++|+++|.+.+.|.++|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+++|..|...+..
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCC
Confidence 389999999999776688999999999999999999999866 478999999999999999999999987765
No 66
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=101.13 Aligned_cols=58 Identities=24% Similarity=0.641 Sum_probs=54.1
Q ss_pred CCCCCCCceeecC-ceeeecCcccc--ccccccCcCCCCCCCCCeeeeCCeeec-HHHHHhH
Q 029230 108 DKCVGCDRTVYPT-EKVSVNGAAYH--RSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQL 165 (197)
Q Consensus 108 ~~C~~C~~~I~~~-e~v~~~g~~~H--~~CF~C~~C~~~l~~~~~~~~dg~~yC-~~cy~~~ 165 (197)
++|++|+++|.++ +.|.++|+.|| ++||+|..|+++|.+..|+.+||+||| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 7899999999975 66889999999 999999999999999899999999999 9999875
No 67
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.2e-16 Score=102.58 Aligned_cols=63 Identities=25% Similarity=0.565 Sum_probs=58.0
Q ss_pred CCCccccccccceecc-eeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 7 GTQQKCMACDKTVYLV-DKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~-~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
...++|.+|+++|... ..+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4568999999999864 57999999999999999999999988889999999999999999986
No 68
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.7e-16 Score=104.22 Aligned_cols=62 Identities=26% Similarity=0.629 Sum_probs=58.0
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhc
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKR 70 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (197)
.+++|.+|+++|. ++.|.++++.||+.||+|..|+++|.++.|+.+++++||+.||.++|++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~ 75 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGS 75 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSS
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCC
Confidence 4589999999999 5789999999999999999999999988999999999999999999983
No 69
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.62 E-value=4.6e-16 Score=119.79 Aligned_cols=68 Identities=28% Similarity=0.592 Sum_probs=63.8
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcCCCCCCC
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 174 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~k~~~~~ 174 (197)
.++|.+|+++|+.++.|.++|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..|.
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~ 74 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKG 74 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCC
T ss_pred CCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccc
Confidence 47899999999988888999999999999999999999998899999999999999999999997554
No 70
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=3.4e-16 Score=104.27 Aligned_cols=66 Identities=27% Similarity=0.563 Sum_probs=60.1
Q ss_pred CCccccccccceecce-eEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCC
Q 029230 8 TQQKCMACDKTVYLVD-KLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGS 73 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~-~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 73 (197)
..++|.+|+++|..++ .+.++++.||++||+|..|+++|..+.|+.+++++||+.||.++|+++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 4589999999998755 58999999999999999999999998999999999999999999986653
No 71
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.8e-16 Score=103.36 Aligned_cols=63 Identities=27% Similarity=0.561 Sum_probs=57.5
Q ss_pred CCCccccccccceecceeEEeCCccccccccccccccccccCCCeeec-CCeeeccccHHHHhhc
Q 029230 7 GTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSF-EGVLYCRPHFDQLFKR 70 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~~ 70 (197)
...++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.. +|++||+.||.++|++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~ 76 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTS
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcC
Confidence 35789999999998 678999999999999999999999998888866 7899999999999983
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.1e-16 Score=103.91 Aligned_cols=65 Identities=26% Similarity=0.495 Sum_probs=58.0
Q ss_pred CCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 6 GGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
....++|.+|+++|. ++.|.++|+.||++||+|..|+++|....| +++|.+||+.||.++|++..
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSS
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCC
Confidence 345689999999999 788999999999999999999999997754 89999999999999998543
No 73
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=1.6e-16 Score=106.07 Aligned_cols=64 Identities=30% Similarity=0.806 Sum_probs=58.2
Q ss_pred CCCCccccccccceecceeEEeCCccccccccccccccccccCCCee--ecCCeeeccccHHHHhh
Q 029230 6 GGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFN--SFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~c~~~~~~ 69 (197)
.+..++|.+|+++|+..+.+.++++.||++||+|..|+++|....|+ +++|++||+.||.++|+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 34568999999999988899999999999999999999999998887 57999999999988876
No 74
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.7e-16 Score=102.34 Aligned_cols=64 Identities=27% Similarity=0.580 Sum_probs=58.8
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 77 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCST
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCC
Confidence 4589999999998 568999999999999999999999998899999999999999999998444
No 75
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-16 Score=104.46 Aligned_cols=65 Identities=23% Similarity=0.567 Sum_probs=58.7
Q ss_pred CCccccccccceec-ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhhccC
Q 029230 8 TQQKCMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG 72 (197)
Q Consensus 8 ~~~~C~~C~~~I~~-~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (197)
..++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCC
Confidence 45799999999984 567889999999999999999999998899999999999999999998433
No 76
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=4.8e-16 Score=101.39 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=56.4
Q ss_pred CCccccccccceecceeEEeCCcccccccccccccccccc-CCCeeecCCeeeccccHHHHhh
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLK-LSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
..++|.+|+++|. ++.|.++|+.||++||+|..|+++|. +..|+.+++++||..||.++++
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4689999999998 58899999999999999999999998 6789999999999999998876
No 77
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.59 E-value=5.8e-16 Score=100.38 Aligned_cols=63 Identities=29% Similarity=0.695 Sum_probs=57.4
Q ss_pred CCCccccccccceeccee-EEeCCccccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 7 GTQQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~-~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
...++|.+|+++|...+. +.+.|+.||++||+|..|+++|..+.|+.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 356899999999997665 689999999999999999999998899999999999999999874
No 78
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.59 E-value=6.3e-16 Score=118.64 Aligned_cols=72 Identities=18% Similarity=0.428 Sum_probs=66.4
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCC--CCeeeeCCeeecHHHHHhHhcC--CCCCCCCCCch
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISP--SNYIAHEGKLYCKHHHIQLFRE--KGNYSQLESDL 179 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~--~~~~~~dg~~yC~~cy~~~~~~--k~~~~~~~~~~ 179 (197)
++|++|+++|.+.+.|.++|+.||++||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..|...+..
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 899999999997666889999999999999999999985 6899999999999999999999 79999987764
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=110.12 Aligned_cols=62 Identities=23% Similarity=0.541 Sum_probs=56.4
Q ss_pred CCccccccccceecceeEEeCCcccccccccccccccccc--CCCeeecCCeeeccccHHHHhh
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLK--LSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
..++|.+|+++|....++.++|+.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3579999999999766799999999999999999999997 3589999999999999999874
No 80
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=96.56 Aligned_cols=59 Identities=25% Similarity=0.611 Sum_probs=54.1
Q ss_pred Cccccccccceec-ceeEEeCCcccc--ccccccccccccccCCCeeecCCeeec-cccHHHH
Q 029230 9 QQKCMACDKTVYL-VDKLTADNRVYH--KACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQL 67 (197)
Q Consensus 9 ~~~C~~C~~~I~~-~~~~~~~g~~~H--~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~c~~~~ 67 (197)
+++|.+|+++|.. ++.|.++|+.|| ++||+|..|+++|.+..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4789999999997 478999999999 999999999999998899999999999 8888654
No 81
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=98.48 Aligned_cols=60 Identities=22% Similarity=0.558 Sum_probs=54.8
Q ss_pred CCccccccccceec----ceeEEeCCccccccccccccccccccCCCeeecCCeeeccccHHHH
Q 029230 8 TQQKCMACDKTVYL----VDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQL 67 (197)
Q Consensus 8 ~~~~C~~C~~~I~~----~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 67 (197)
..++|.+|+++|.+ .+.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 45899999999993 4789999999999999999999999988999999999999999753
No 82
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6.6e-15 Score=97.73 Aligned_cols=62 Identities=21% Similarity=0.472 Sum_probs=56.1
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccC-CCee-ecCCeeeccccHHHHhhc
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKL-SNFN-SFEGVLYCRPHFDQLFKR 70 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~c~~~~~~~ 70 (197)
..++|.+|+++|. ++.+.++++.||++||+|..|+++|.. ..|. ++++++||+.||.++|++
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 4579999999999 888999999999999999999999975 5676 589999999999999984
No 83
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.51 E-value=9.7e-15 Score=104.60 Aligned_cols=65 Identities=22% Similarity=0.568 Sum_probs=57.6
Q ss_pred ccccccccceecce-eEEeCCcccccccccccccccccc-CCCeeecCCeeeccccHHHHhhccCCc
Q 029230 10 QKCMACDKTVYLVD-KLTADNRVYHKACFRCHHCKGTLK-LSNFNSFEGVLYCRPHFDQLFKRTGSL 74 (197)
Q Consensus 10 ~~C~~C~~~I~~~~-~~~~~g~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~~~~~~ 74 (197)
++|.+|+++|...+ .+.++++.||+.||+|..|+++|. +..|+.+++.+||..||.+++++++..
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~ 75 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGS 75 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCC
Confidence 48999999999744 579999999999999999999995 457999999999999999999977654
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=6.2e-14 Score=93.02 Aligned_cols=61 Identities=21% Similarity=0.495 Sum_probs=53.3
Q ss_pred CCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCC-eeeccccHHHHhh
Q 029230 8 TQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEG-VLYCRPHFDQLFK 69 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~c~~~~~~ 69 (197)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|..+.|+..++ .+||..||.+++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 4579999999999 78899999999999999999999998777666655 4799999987765
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.68 E-value=6.7e-09 Score=55.81 Aligned_cols=28 Identities=43% Similarity=0.994 Sum_probs=27.1
Q ss_pred CCCCCCCceeecCceeeecCcccccccc
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF 135 (197)
++|++|++.|+++|.+.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 7899999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.33 E-value=1.3e-07 Score=50.70 Aligned_cols=29 Identities=38% Similarity=0.902 Sum_probs=27.5
Q ss_pred CccccccccceecceeEEeCCcccccccc
Q 029230 9 QQKCMACDKTVYLVDKLTADNRVYHKACF 37 (197)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~g~~~H~~CF 37 (197)
.++|..|++.|+..+.+.++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 47999999999999999999999999998
No 87
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=87.84 E-value=0.43 Score=28.37 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=24.0
Q ss_pred ccCcCCCCCCCCCeeeeCCeeec-HHHHHhH
Q 029230 136 KCSHGGCTISPSNYIAHEGKLYC-KHHHIQL 165 (197)
Q Consensus 136 ~C~~C~~~l~~~~~~~~dg~~yC-~~cy~~~ 165 (197)
.|..|+..++...-+..||+.|| +.|...-
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 37788888888788899999998 7887653
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.63 E-value=1.1 Score=30.33 Aligned_cols=97 Identities=19% Similarity=0.410 Sum_probs=55.9
Q ss_pred CCCCccccccccceecceeEEeC--CccccccccccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCc
Q 029230 6 GGTQQKCMACDKTVYLVDKLTAD--NRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPK 83 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~--g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~ 83 (197)
......|..|+..-...+.|.-. ++.||..|+.=. +.. ...+.-+|..|
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~-----~~~----~~~~~W~C~~C-------------------- 54 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA-----VTP----LKRAGWQCPEC-------------------- 54 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC-----CCT----TTSTTCCCTTT--------------------
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc-----ccc----ccccCccCCcC--------------------
Confidence 34557899998764322234333 477888886532 110 13455667665
Q ss_pred ccCCCCcccccCccccccccCCCCCCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHH
Q 029230 84 IVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHH 161 (197)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~c 161 (197)
..|..|++.-.....|. .=++.||..|..= +|.. .-.+.-||..|
T Consensus 55 ------------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C 101 (111)
T 2ysm_A 55 ------------------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCKNC 101 (111)
T ss_dssp ------------------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCHHH
T ss_pred ------------------------CcccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc----CCCCCcCCcCC
Confidence 35788887654434443 4567899988742 2322 12367889888
Q ss_pred HHh
Q 029230 162 HIQ 164 (197)
Q Consensus 162 y~~ 164 (197)
...
T Consensus 102 ~~c 104 (111)
T 2ysm_A 102 RIC 104 (111)
T ss_dssp HCC
T ss_pred cCc
Confidence 554
No 89
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.08 E-value=0.96 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=26.3
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.-|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 45788899887764 44456899999999988774
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=85.60 E-value=0.49 Score=32.54 Aligned_cols=104 Identities=11% Similarity=0.219 Sum_probs=60.0
Q ss_pred cccccccccccCC----C--eeecCCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCC
Q 029230 37 FRCHHCKGTLKLS----N--FNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKC 110 (197)
Q Consensus 37 F~C~~C~~~L~~~----~--f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 110 (197)
+.|..|...+... . ....=|..||..|..+.+.. ...|
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------------------------------------~~~C 51 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------------------------------------ANTC 51 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT------------------------------------CSBC
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh------------------------------------CCCC
Confidence 5677776665432 1 33445788888888776541 1468
Q ss_pred CCCCceeecCceeeecCccccccccccCcCCCCCCCC----C--eeeeCCeeecHHHHHhHh--cCCCCCCCCCCch
Q 029230 111 VGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPS----N--YIAHEGKLYCKHHHIQLF--REKGNYSQLESDL 179 (197)
Q Consensus 111 ~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~----~--~~~~dg~~yC~~cy~~~~--~~k~~~~~~~~~~ 179 (197)
+.|.+.+...+.... ..-.+=+.|..|...+... . ....=|..||..|..+.+ ...|-.|......
T Consensus 52 P~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 52 PTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp TTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 888888765443211 1122345677776665421 1 222348889998876654 3456666665544
No 91
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.77 E-value=0.71 Score=29.16 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCCCCCCceeecCceeeecCcccccccc
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCF 135 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF 135 (197)
...|+.|...|.+++.-..-+..||..|+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 47899999999765432334455666665
No 92
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=84.41 E-value=1.5 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCCCCCceeecC----c--eeeecCcccccccc--------ccCcCCCCCCCCCe
Q 029230 108 DKCVGCDRTVYPT----E--KVSVNGAAYHRSCF--------KCSHGGCTISPSNY 149 (197)
Q Consensus 108 ~~C~~C~~~I~~~----e--~v~~~g~~~H~~CF--------~C~~C~~~l~~~~~ 149 (197)
..|+.|...+... . .+..-|..||..|. .|-.|...+.....
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 6799998877532 1 23456788888887 58888888766443
No 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.60 E-value=1.2 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=24.1
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+... ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHH
Confidence 47788888777643 3346688999999988763
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.10 E-value=1.5 Score=26.81 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.0
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+.. .....=|+.||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHH
Confidence 3778888887764 33335688999999987763
No 95
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.60 E-value=1.9 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=22.4
Q ss_pred cccccccc-cccCCC---eeecCCeeeccccHHHHhh
Q 029230 37 FRCHHCKG-TLKLSN---FNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~-~L~~~~---f~~~~g~~yC~~c~~~~~~ 69 (197)
+.|..|.. .+.+.. ....=|..+|..|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH
Confidence 56778877 554432 2345688999999988764
No 96
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=80.60 E-value=1.3 Score=29.70 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=41.6
Q ss_pred ccccccccccCCCeeecCCeeeccccHHHHhhccCCcccccCCCCcccCCCCcccccCccccccccCCCCCCCCCCCcee
Q 029230 38 RCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTV 117 (197)
Q Consensus 38 ~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I 117 (197)
-|..|+.++..-.-...=+.++|-+|+....... ...|+.|..+|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-----------------------------------~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-----------------------------------DKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-----------------------------------CCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-----------------------------------CCCCcCcCCee
Confidence 3677888875322233345788999987654311 16799999999
Q ss_pred ecCceeeecCccccccccccC---cCCCCCC
Q 029230 118 YPTEKVSVNGAAYHRSCFKCS---HGGCTIS 145 (197)
Q Consensus 118 ~~~e~v~~~g~~~H~~CF~C~---~C~~~l~ 145 (197)
..-|.. .+|.. |.|. .|.+..-
T Consensus 48 ~rVe~~-~~~~i-----f~C~~~~~CkrtyL 72 (101)
T 3vk6_A 48 QRIEQC-TRGSL-----FMCSIVQGCKRTYL 72 (101)
T ss_dssp SEEEEE-EGGGC-----CCCCCCCCCCCCCS
T ss_pred eeeEEe-ccCCE-----EECCCCCCHHHHhc
Confidence 765543 44555 4565 4666543
No 97
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.42 E-value=1.7 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=24.5
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.-+.|..|...+.+......=|+.||..|..+.+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 34778888877765322235688999999887764
No 98
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.51 E-value=1 Score=28.35 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCCCCccccccccceecceeEEeCCcccccccc
Q 029230 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACF 37 (197)
Q Consensus 4 ~~~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF 37 (197)
.+......|..|...|..+..-..=+..||..|+
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred hccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 3445668899999999855443333445666665
No 99
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=77.81 E-value=1.1 Score=34.79 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=19.7
Q ss_pred cCCCCCCCCCCCceeecCceeeecCcccccccc
Q 029230 103 FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCF 135 (197)
Q Consensus 103 ~~~~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF 135 (197)
+.+..+.|..|...|..+..=.--+..||..|+
T Consensus 176 ~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 176 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp CTTTCCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred cCCCCCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 344568899999988755311113445555555
No 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.44 E-value=2.1 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=24.8
Q ss_pred cccccccccccccCCCeeec-CCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSF-EGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~ 69 (197)
.=+.|..|...+.. ..... =|+.||..|..+.+.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 14 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 34778888877764 34444 389999999988775
No 101
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=76.94 E-value=0.84 Score=34.64 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.8
Q ss_pred cccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 135 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
.+|..|+-......-...||+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 468888877766566778899999999876
No 102
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.16 E-value=2.3 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=24.1
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+........=|+.||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 3678888887764322245588999999987765
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.23 E-value=1.1 Score=30.66 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=30.5
Q ss_pred CCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhH
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~ 165 (197)
..|..|++.-..++.|. .=++.||..|.. .+|.. .-.|.-+|..|....
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-----ppl~~----~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLN-----PPVAE----PPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSS-----SCCSS----CCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccC-----CCccC----CCCCCeECccccchh
Confidence 45888887655455443 445789998863 23332 234678899886543
No 104
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=75.13 E-value=2.5 Score=30.42 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=25.7
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.-+.|..|...+........=|+.||..|..+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 45788999888875322225689999999988775
No 105
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=73.91 E-value=3.3 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.1
Q ss_pred cccccccccccccCCCeeec-CCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSF-EGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~ 69 (197)
.-|.|..|...+.+ ..... =|+.||..|..+.+.
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHH
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHH
Confidence 34788999888764 34445 389999999987764
No 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=72.61 E-value=2.9 Score=27.27 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=24.8
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.=+.|..|...+.+......=|+.||..|..+.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 34778888887765322225688999999987764
No 107
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=72.26 E-value=3.4 Score=24.68 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=19.3
Q ss_pred ccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 38 RCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 38 ~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.|..|...+........=|..||..|..+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 45666665554333334567788888876553
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.17 E-value=2.7 Score=28.48 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=23.2
Q ss_pred ccccccccccccCCCeee-cCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNS-FEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+.. .... .=|+.||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc
Confidence 4778888877764 3333 5688899999876654
No 109
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=71.18 E-value=2.5 Score=23.59 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=15.8
Q ss_pred CeeeeCCeeecHHHHHhHh
Q 029230 148 NYIAHEGKLYCKHHHIQLF 166 (197)
Q Consensus 148 ~~~~~dg~~yC~~cy~~~~ 166 (197)
.|+..+-+|||.+||.++-
T Consensus 21 F~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHH
T ss_pred eEEEecCccchHHHHHHHh
Confidence 4667899999999999764
No 110
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=70.28 E-value=3.6 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=24.5
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=|.|..|...+... ....=|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChhhcCe-EECCcCChhhHHHHHHHHh
Confidence 37888888877643 4445688999999987664
No 111
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=70.24 E-value=3.4 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=26.3
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.=|.|..|...|... ....-|..||..|..+.+.
T Consensus 17 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 17 SKYECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHH
Confidence 347899998888753 4456789999999988765
No 112
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=69.31 E-value=2.3 Score=24.99 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCCCCCceeecC----c--eeeecCcccccccc--------ccCcCCCCCCCC
Q 029230 108 DKCVGCDRTVYPT----E--KVSVNGAAYHRSCF--------KCSHGGCTISPS 147 (197)
Q Consensus 108 ~~C~~C~~~I~~~----e--~v~~~g~~~H~~CF--------~C~~C~~~l~~~ 147 (197)
..|+.|...+... + .+..-|..||..|+ .|..|...+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 5677777665431 1 23345666666666 466666666543
No 113
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.96 E-value=7 Score=25.47 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=7.7
Q ss_pred eeccccHHHHh
Q 029230 58 LYCRPHFDQLF 68 (197)
Q Consensus 58 ~yC~~c~~~~~ 68 (197)
+.|++||+-..
T Consensus 44 PvCrpCyEYEr 54 (93)
T 1weo_A 44 PACRPCYEYER 54 (93)
T ss_dssp CCCHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 56889986544
No 114
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=68.53 E-value=4.4 Score=25.47 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=20.8
Q ss_pred cccccccccccCC--Ceee-cCCeeeccccHHHHhh
Q 029230 37 FRCHHCKGTLKLS--NFNS-FEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~~L~~~--~f~~-~~g~~yC~~c~~~~~~ 69 (197)
+.|..|-.++... .+.. .=|..+|..|+.+.+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~ 47 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT 47 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHh
Confidence 5677776666432 2221 2578889999987764
No 115
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.29 E-value=5.8 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=23.4
Q ss_pred cccccccccccCCC---eeecCCeeeccccHHHHhh
Q 029230 37 FRCHHCKGTLKLSN---FNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~~L~~~~---f~~~~g~~yC~~c~~~~~~ 69 (197)
+.|..|...+.... ....=|+.||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 67888877776532 2334578999999988775
No 116
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=68.15 E-value=4.4 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=25.5
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.=+.|..|...+.+ .....=|..||..|..+.+.
T Consensus 22 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 22 KSISCQICEHILAD-PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HHTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh
Confidence 34788999888764 34456789999999987765
No 117
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.66 E-value=6 Score=26.11 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=23.7
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
-+.|..|...+... ....=|+.||..|..+.+.
T Consensus 21 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 21 ILECPICLELIKEP-VSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp HTSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHH
T ss_pred CCCCcccChhhcCe-EECCCCCHHHHHHHHHHHH
Confidence 36788887777543 3345688999999988775
No 118
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.37 E-value=6.5 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=24.9
Q ss_pred cCccccccccccCcCCCC-CCCCCeeee--CCeeecHHHHHhH
Q 029230 126 NGAAYHRSCFKCSHGGCT-ISPSNYIAH--EGKLYCKHHHIQL 165 (197)
Q Consensus 126 ~g~~~H~~CF~C~~C~~~-l~~~~~~~~--dg~~yC~~cy~~~ 165 (197)
....+|+ ..|..|+.. |.+..|.-. .+--+|..||.+.
T Consensus 5 ~~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 5 SSGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred cCCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 3456676 778888764 666555432 3566899999874
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=66.72 E-value=5.9 Score=30.62 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=29.0
Q ss_pred ccccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 32 YHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 32 ~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
--+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 204 ~~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 34567999999888874 45556899999999887765
No 120
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=66.16 E-value=5.5 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=25.0
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.-+.|..|...+.. .....=|+.||..|....+.
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cCCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHh
Confidence 34788999887764 33345688999999987764
No 121
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=66.00 E-value=1.6 Score=33.08 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=26.1
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHH
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQ 66 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 66 (197)
=.+|..|+.......-...+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4679999998887666778999999999864
No 122
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.80 E-value=6.1 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.0
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+... ....=|+.||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQP-LSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHH
Confidence 36788888877643 3335688999999987764
No 123
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=64.82 E-value=5.1 Score=26.52 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=25.0
Q ss_pred cccccccccccccCCCeee-cCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNS-FEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~ 69 (197)
.-+.|..|...+.+ .... .=|+.||..|..+.+.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred CcCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 34778888887764 3443 6789999999987764
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.70 E-value=11 Score=25.44 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCccccccccceecceeEEeC----CccccccccccccccccccCCCeeecCCeeecccc
Q 029230 8 TQQKCMACDKTVYLVDKLTAD----NRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~----g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c 63 (197)
....|..|+. .++.|.-+ .+.||..|+. |.. .-+|.-||..|
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 3456888874 35666554 2568888764 322 13567778766
No 125
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.51 E-value=8.1 Score=23.82 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=24.1
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+... ....=|+.||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHH
T ss_pred CCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHH
Confidence 36788888777643 3445688999999987765
No 126
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.29 E-value=5 Score=24.94 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+.. .....=|+.||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 3678888777754 34445688999999887764
No 127
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=64.12 E-value=6.5 Score=22.16 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCCCCCceeecCce---eeecCcccccccc--------ccCcCCCCCC
Q 029230 108 DKCVGCDRTVYPTEK---VSVNGAAYHRSCF--------KCSHGGCTIS 145 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~---v~~~g~~~H~~CF--------~C~~C~~~l~ 145 (197)
..|+.|...+...+. +..=+..||..|+ .|..|...|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 568888877754321 2244666777765 3555555543
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=63.19 E-value=6.4 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=23.1
Q ss_pred cccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 37 FRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
+.|..|...+.. .....=|+.||..|..+.+.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHH
Confidence 678888887764 34445688999999876553
No 129
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.05 E-value=4.3 Score=24.87 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCCCCCCceeecCceee--ecCcccccccc--------ccCcCCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCF--------KCSHGGCTIS 145 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF--------~C~~C~~~l~ 145 (197)
..|+.|...+...+.+. .=+..||..|+ .|..|...+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 57888888776554432 45677887776 3666666554
No 130
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=62.80 E-value=3.5 Score=26.36 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=19.1
Q ss_pred CccccccccceecceeEEeCCccccccccccc
Q 029230 9 QQKCMACDKTVYLVDKLTADNRVYHKACFRCH 40 (197)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~ 40 (197)
...|..|.+.+.+.-.|..-...-|.-||.|+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 34566666666655556555556666666664
No 131
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=61.76 E-value=11 Score=24.81 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=28.2
Q ss_pred ccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 34 KACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHH
Confidence 677999999888874 45556899999999887764
No 132
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=60.91 E-value=7.6 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cCCEeecCChhhcC-CEEcCCCCchhHHHHHHHHH
Confidence 34788999887764 33456688999999988775
No 133
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.75 E-value=4.7 Score=25.75 Aligned_cols=49 Identities=27% Similarity=0.530 Sum_probs=35.8
Q ss_pred CCCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeeeeCCeeecHH
Q 029230 107 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKH 160 (197)
Q Consensus 107 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~ 160 (197)
.-+|.-|.+.+.+...|.--...-|+-||-|+. ..|.. ...++++||..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA---QGATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH---HHSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh---cCCCCcEECCC
Confidence 368999999999888788778888999999974 22221 12457788853
No 134
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=60.33 E-value=7 Score=24.83 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 34 KACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 456999999888874 45556899999999887764
No 135
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=59.28 E-value=11 Score=24.75 Aligned_cols=35 Identities=9% Similarity=-0.192 Sum_probs=27.5
Q ss_pred ccccccccccccccCCCeeecCC-eeeccccHHHHhh
Q 029230 34 KACFRCHHCKGTLKLSNFNSFEG-VLYCRPHFDQLFK 69 (197)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~c~~~~~~ 69 (197)
+.=|.|..|...+.+ ......| ..||..|..+.+.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHH
Confidence 567999999888874 4555677 9999999887764
No 136
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=58.62 E-value=9.3 Score=28.23 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 34 KACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 677999999888874 55667899999999887775
No 137
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.68 E-value=9.5 Score=22.94 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=21.0
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (197)
-+.|..|...+... ....=|+.||..|..+.+
T Consensus 15 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCT
T ss_pred CCCCccCCcccCCC-EEccCCCHHHHHHHHHHH
Confidence 35677777666543 333467888988887654
No 138
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=57.66 E-value=3.7 Score=24.65 Aligned_cols=43 Identities=16% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCCccccccccceecc----e--eEEeCCcccccccc--------ccccccccccCC
Q 029230 7 GTQQKCMACDKTVYLV----D--KLTADNRVYHKACF--------RCHHCKGTLKLS 49 (197)
Q Consensus 7 ~~~~~C~~C~~~I~~~----~--~~~~~g~~~H~~CF--------~C~~C~~~L~~~ 49 (197)
.....|..|...+... . ++..=|..||..|+ +|-.|+..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3456688887776532 1 33334556666666 566666666543
No 139
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.54 E-value=11 Score=21.87 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.7
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 4778888887764 33446688999999988775
No 140
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=56.39 E-value=9.1 Score=21.53 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=18.6
Q ss_pred CCCCCCCceeecCceee---ecCcccccccc
Q 029230 108 DKCVGCDRTVYPTEKVS---VNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~---~~g~~~H~~CF 135 (197)
..|+.|...+..++.+. .-+..||..|+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHH
Confidence 56888888876654332 25667777776
No 141
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=56.18 E-value=4.7 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=21.2
Q ss_pred ccccccccccccCCCeeecCCeeeccccHHHHh
Q 029230 36 CFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (197)
=|.|..|...+.. .....=|+.||..|..+.+
T Consensus 15 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HHBCTTTCSBCSS-CEECTTSCEECHHHHCCCC
T ss_pred CCCCccCCcccCc-eeEcCCCCHHhHHHHHHHH
Confidence 3677888777653 3333557888988876554
No 142
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.81 E-value=15 Score=22.40 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=19.3
Q ss_pred cccccccccccCCC--eeecCCeeeccccHHHHhh
Q 029230 37 FRCHHCKGTLKLSN--FNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~~~ 69 (197)
+.|..|...+.... ....=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH
Confidence 55666666665332 1223467788888776653
No 143
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.42 E-value=17 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=19.8
Q ss_pred cccccccccccCCCee--ecCCeeeccccHHHHhh
Q 029230 37 FRCHHCKGTLKLSNFN--SFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 37 F~C~~C~~~L~~~~f~--~~~g~~yC~~c~~~~~~ 69 (197)
..|..|...+...... ..=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH
Confidence 4566666666543221 23477888888877654
No 144
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.05 E-value=28 Score=22.25 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=21.9
Q ss_pred cccCcCCCCCCCCCeee-eCCeeecHHHHHhHhc
Q 029230 135 FKCSHGGCTISPSNYIA-HEGKLYCKHHHIQLFR 167 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~-~dg~~yC~~cy~~~~~ 167 (197)
|.|..|...+.. .... ..|..||+.|..+.+.
T Consensus 8 ~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 667777766554 4555 4788899888766664
No 145
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=51.95 E-value=6 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=20.3
Q ss_pred cccccccccccCCCeeecCCeeeccccHHHHh
Q 029230 37 FRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLF 68 (197)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (197)
+.|..|...+... ....=|+.||..|..+.+
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSN 43 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCC
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHH
Confidence 6677777766542 233457788888876554
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.92 E-value=6.7 Score=25.09 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=6.5
Q ss_pred cccccccccee
Q 029230 10 QKCMACDKTVY 20 (197)
Q Consensus 10 ~~C~~C~~~I~ 20 (197)
..|..|+.+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45666666654
No 147
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=51.86 E-value=6.9 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=19.6
Q ss_pred CCCCCCCceeecCce-ee--e-----c---Cccccccccc
Q 029230 108 DKCVGCDRTVYPTEK-VS--V-----N---GAAYHRSCFK 136 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v~--~-----~---g~~~H~~CF~ 136 (197)
..|..|++.|.-++. |- + . ...||..||.
T Consensus 21 A~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 21 SSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 689999999987763 21 1 1 2356778875
No 148
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=51.28 E-value=6.2 Score=26.50 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=19.8
Q ss_pred CCCCCCCceeecCce-ee--e-----cC---ccccccccc
Q 029230 108 DKCVGCDRTVYPTEK-VS--V-----NG---AAYHRSCFK 136 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v~--~-----~g---~~~H~~CF~ 136 (197)
..|..|++.|.-++. |- + .| +.||..||.
T Consensus 26 a~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 26 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 689999999987762 21 1 11 357888886
No 149
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.34 E-value=17 Score=22.80 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=19.8
Q ss_pred CCCCccccccccceecceeEEeC------Ccccccccc
Q 029230 6 GGTQQKCMACDKTVYLVDKLTAD------NRVYHKACF 37 (197)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~------g~~~H~~CF 37 (197)
......|..|......++.+... ...||..|+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 34557899998776544444221 267888886
No 150
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.22 E-value=6.7 Score=23.20 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.9
Q ss_pred cccccccccee
Q 029230 10 QKCMACDKTVY 20 (197)
Q Consensus 10 ~~C~~C~~~I~ 20 (197)
..|..|...+.
T Consensus 16 ~~C~IC~~~~~ 26 (69)
T 2ea6_A 16 VSCPICMDGYS 26 (69)
T ss_dssp CCCTTTCCCHH
T ss_pred CCCcccCcccc
Confidence 45666655543
No 151
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=47.59 E-value=12 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=16.0
Q ss_pred CCCCCCCceeecCcee--eecCcccccccc
Q 029230 108 DKCVGCDRTVYPTEKV--SVNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v--~~~g~~~H~~CF 135 (197)
..|+.|...+..++.+ ..-+..||..|+
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 44 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCV 44 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHH
Confidence 5688887766543322 234555666665
No 152
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=43.62 E-value=8.6 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=12.1
Q ss_pred CCCCCCCceeecCc
Q 029230 108 DKCVGCDRTVYPTE 121 (197)
Q Consensus 108 ~~C~~C~~~I~~~e 121 (197)
..|.+|++.|.-++
T Consensus 20 a~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 20 STCKGCMEKIEKGQ 33 (111)
T ss_dssp CBCTTTCCBCCTTC
T ss_pred ccccccCCCccCCc
Confidence 68999999998766
No 153
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=42.83 E-value=8.6 Score=26.35 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=12.2
Q ss_pred CCCCCCCceeecCc
Q 029230 108 DKCVGCDRTVYPTE 121 (197)
Q Consensus 108 ~~C~~C~~~I~~~e 121 (197)
..|..|++.|.-++
T Consensus 39 A~Ck~C~~kI~Kge 52 (116)
T 3od8_A 39 ASCKKCSESIPKDS 52 (116)
T ss_dssp CBCTTTCCBCCTTS
T ss_pred ccCcccCCccCCCC
Confidence 68999999998776
No 154
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.57 E-value=17 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=18.4
Q ss_pred cccccccccccCCCeeecCCee-eccccHHH
Q 029230 37 FRCHHCKGTLKLSNFNSFEGVL-YCRPHFDQ 66 (197)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~-yC~~c~~~ 66 (197)
+.|..|...+.+..+ ..=|+. +|..|..+
T Consensus 26 ~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~ 55 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEA 55 (75)
T ss_dssp HSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH
T ss_pred CCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC
Confidence 567778766654333 244666 89999753
No 155
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.50 E-value=11 Score=22.91 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCCCCCCceeecCce-eeec---CccccccccccCcCCCCCCCCCee----eeCCeeecHHHH
Q 029230 108 DKCVGCDRTVYPTEK-VSVN---GAAYHRSCFKCSHGGCTISPSNYI----AHEGKLYCKHHH 162 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v~~~---g~~~H~~CF~C~~C~~~l~~~~~~----~~dg~~yC~~cy 162 (197)
..|..|++++.+.+. |.-. .+.||..|- -|+...+. ..++..+|..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv-------glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICT-------GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH-------TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhcc-------CCCHHHHHHhhccCCCcEECcCcc
Confidence 679999999876643 4444 567887663 24332221 134577787774
No 156
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.39 E-value=8.3 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=15.3
Q ss_pred CCCCCCCceeecC-ceee--ecCcccccccc
Q 029230 108 DKCVGCDRTVYPT-EKVS--VNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~-e~v~--~~g~~~H~~CF 135 (197)
..|..|++.-... +.|. .=++.||..|.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl 92 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECC 92 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccC
Confidence 3477777643222 2232 34577888775
No 157
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=42.38 E-value=11 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=12.2
Q ss_pred CCCCCCCceeecCc
Q 029230 108 DKCVGCDRTVYPTE 121 (197)
Q Consensus 108 ~~C~~C~~~I~~~e 121 (197)
..|.+|++.|.-++
T Consensus 16 A~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 16 AGCKKCKEKIVKGV 29 (117)
T ss_dssp EECTTSSCEECTTC
T ss_pred ccchhhCcccCCCC
Confidence 57999999998776
No 158
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.69 E-value=11 Score=23.54 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCccccccccceec-----------ce---eEEeCCccccccccc--------ccccccccc
Q 029230 8 TQQKCMACDKTVYL-----------VD---KLTADNRVYHKACFR--------CHHCKGTLK 47 (197)
Q Consensus 8 ~~~~C~~C~~~I~~-----------~~---~~~~~g~~~H~~CF~--------C~~C~~~L~ 47 (197)
....|+.|...+.. ++ .+..=+..||..|+. |-.|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 44678888887742 11 122256678887763 667766654
No 159
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=41.49 E-value=16 Score=21.84 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCCCCCceeec--Cceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhH
Q 029230 108 DKCVGCDRTVYP--TEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 108 ~~C~~C~~~I~~--~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~ 165 (197)
..|..|+..-.. ++.|. .-++.||..|.. .+|.. .....++.-||..|-.+.
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-----p~l~~-~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-----PHIDS-SVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-----SCCCH-HHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-----Ccccc-cccCCCCCEECCCCcCcc
Confidence 679999876321 33343 445789988752 22322 111245778999997654
No 160
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=41.19 E-value=4.3 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.578 Sum_probs=26.4
Q ss_pred cccccccccccccCCCeeecCCeeeccccHHHHhh
Q 029230 35 ACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (197)
.=|.|..|...|... ....=|..||..|..+.+.
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 457899998888643 5556789999999988764
No 161
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.89 E-value=5.3 Score=26.48 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=18.0
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISP 146 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~ 146 (197)
..|+.|++++. .+.|-|.. =|-|..|+-.++.
T Consensus 62 a~CPdC~q~Le---vLkACGAv----dYFC~~chgLiSK 93 (101)
T 2jne_A 62 ALCPDCHQPLQ---VLKACGAV----DYFCQHGHGLISK 93 (101)
T ss_dssp EECTTTCSBCE---EEEETTEE----EEEETTTTEEECT
T ss_pred ccCcchhhHHH---HHHHhcCc----chhhccCCceeec
Confidence 56888887763 45555522 1346666654443
No 162
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.87 E-value=8.4 Score=23.56 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.8
Q ss_pred CCeeecHHHHHhHh
Q 029230 153 EGKLYCKHHHIQLF 166 (197)
Q Consensus 153 dg~~yC~~cy~~~~ 166 (197)
||.+||..||.+.-
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 46799999999875
No 163
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.40 E-value=16 Score=28.75 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=26.3
Q ss_pred ccccccccccccccCCCee-ecCCeeeccccHHHHhh
Q 029230 34 KACFRCHHCKGTLKLSNFN-SFEGVLYCRPHFDQLFK 69 (197)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~ 69 (197)
..=|+|..|...+.. ... ..=|+.||+.|..+.+.
T Consensus 179 ~~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 179 KIELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp BCCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHST
T ss_pred ceeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHH
Confidence 345889999888864 333 35689999999988775
No 164
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.31 E-value=7.4 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=17.3
Q ss_pred CCCCCCCceeecCceeeecCcccccccc
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF 135 (197)
..|..|...+.. .+..-|..||..|+
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci 41 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCI 41 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHH
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHH
Confidence 568888877654 44556666777665
No 165
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=39.89 E-value=20 Score=21.11 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=25.6
Q ss_pred ccccccccccccCCCeee-cCCeeeccccHHHHhh
Q 029230 36 CFRCHHCKGTLKLSNFNS-FEGVLYCRPHFDQLFK 69 (197)
Q Consensus 36 CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~ 69 (197)
-|.|..+...+.+ .... ..|..|+..+..+.+.
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~ 36 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVK 36 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHH
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHH
Confidence 3788888888874 4555 7899999999887765
No 166
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.51 E-value=13 Score=22.94 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHh
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~ 166 (197)
..|..|+++-....+|. .-+..||..|.. .++.. ..++..||..|..++-
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-----~~~~~----~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAAP----PEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-----CSSCC----CSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-----CCccC----CCCCCEEChhccCchh
Confidence 46999998764333443 334678887752 22221 1246788999977653
No 167
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=39.37 E-value=8.5 Score=25.66 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCCCCCCceeecCceeeecCcccccccc---------ccCcCCCCCCCCCeeeeCCeeecH
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCF---------KCSHGGCTISPSNYIAHEGKLYCK 159 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF---------~C~~C~~~l~~~~~~~~dg~~yC~ 159 (197)
..|..|+.||..-.++..=...|-.+|. .|..|..++..-+....++...|.
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~ 62 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS 62 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence 4589999999644445555556666666 377788777654445556666665
No 168
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.33 E-value=13 Score=26.06 Aligned_cols=29 Identities=31% Similarity=0.726 Sum_probs=20.0
Q ss_pred CCCCCCCceeecCce-e---eec------C---ccccccccc
Q 029230 108 DKCVGCDRTVYPTEK-V---SVN------G---AAYHRSCFK 136 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~-v---~~~------g---~~~H~~CF~ 136 (197)
..|..|++.|.-++. | ... | ..||..||.
T Consensus 28 A~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 28 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp CBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred ccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 689999999987763 1 111 2 257888986
No 169
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.47 E-value=31 Score=22.16 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.7
Q ss_pred ccCCCCcccccc
Q 029230 184 ISEKPTPVQIAA 195 (197)
Q Consensus 184 ~~~~~~~~~~~~ 195 (197)
...+.+|++.|+
T Consensus 72 ~iak~NPvV~a~ 83 (85)
T 1wff_A 72 YLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCCCCCTT
T ss_pred HHHHHCCeecCC
Confidence 345777777764
No 170
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.24 E-value=17 Score=23.34 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCCCCCceeec--Cceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhH
Q 029230 108 DKCVGCDRTVYP--TEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 108 ~~C~~C~~~I~~--~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~ 165 (197)
..|..|++.-.. ++.|. .-++.||..|.. -+|.......-.|.-||..|-.+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccchh
Confidence 679999876432 23343 446789998852 234321122446788999997665
No 171
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=36.42 E-value=4.9 Score=35.88 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCCCCccccccccceecceeEEeCCccccccccccccccccccCCCeeecCCeee
Q 029230 4 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLY 59 (197)
Q Consensus 4 ~~~~~~~~C~~C~~~I~~~~~~~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~y 59 (197)
.++....+|..|-+.|.+ -.++.|+=-=..|+.|+-. |.+....||
T Consensus 12 ~i~pD~a~C~~Cl~e~~d-----p~~Rry~YpF~nCt~CGPR-----~tii~~lPY 57 (657)
T 3ttc_A 12 QIVPDAATCPACLAEMNT-----PGERRYRYPFINCTHCGPR-----FTIIRAMPY 57 (657)
T ss_dssp CCCCCBCCCHHHHHHHTS-----TTSTTTTCTTCCBTTBBCS-----GGGBSSSSC
T ss_pred ccCCchhhhHHHHHHhcC-----CCCcccCCccccCcCCCch-----HHhcccCCC
Confidence 455667788888777762 4455555444568888744 444444444
No 172
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=36.27 E-value=6.5 Score=35.77 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=19.2
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTI 144 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l 144 (197)
+.|..|.+ |+-...++.||-.=-.|..|+-.|
T Consensus 162 ~mC~~C~~-----EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 162 PMCEKCSR-----EYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCCHHHHH-----HHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCCHHHHH-----HhcCcccccccCCCCcCCccCCee
Confidence 55666643 233455677776666677776655
No 173
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=36.22 E-value=50 Score=21.68 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=22.0
Q ss_pred cccccccccCcCCC-CCCCCCeeee--CCeeecHHHHHhH
Q 029230 129 AYHRSCFKCSHGGC-TISPSNYIAH--EGKLYCKHHHIQL 165 (197)
Q Consensus 129 ~~H~~CF~C~~C~~-~l~~~~~~~~--dg~~yC~~cy~~~ 165 (197)
.+|+. +.|..|+. +|.+..|.-. .+--+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 35554 56666765 4555444432 3456899999875
No 174
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.09 E-value=15 Score=21.04 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCCCCCCceeecCceeeecCcccccccc-----ccCcCCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCF-----KCSHGGCTIS 145 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF-----~C~~C~~~l~ 145 (197)
..|+.|...+... .+..-|..|+..|. .|..|...+.
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 5688888766532 23455666666664 3555555443
No 175
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=34.88 E-value=68 Score=18.58 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=30.3
Q ss_pred CCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHh
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~ 166 (197)
..|..|++. ++.|. .-.+.||..|.. .+|.. .-.|.-||..|-.+..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLD-----PPLKT----IPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSS-----SCCSS----CCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCC-----CCcCC----CCCCceEChhccChhh
Confidence 679999874 45453 445789988763 23332 2246789999976654
No 176
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=32.33 E-value=42 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=19.0
Q ss_pred cccCcCCCCCCCCCeeeeCCeeecHHHHHhHhc---CCCCCCCCC
Q 029230 135 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFR---EKGNYSQLE 176 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~---~k~~~~~~~ 176 (197)
|.|..|...+.. .....-|..||..|..+.+. .+|..|...
T Consensus 19 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 62 (170)
T 3hcs_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 62 (170)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccC
Confidence 345555444433 22223455666666655442 244444443
No 177
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=31.72 E-value=42 Score=18.48 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=17.4
Q ss_pred ccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 136 KCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 136 ~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
.|..|+..-+..--...+|..+|..|...
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 36666665443223334677899999653
No 178
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=31.71 E-value=7.2 Score=29.12 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=17.6
Q ss_pred ccccCcCCCCCCCCCeeeeCCeeecHHHHHhH
Q 029230 134 CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 134 CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~ 165 (197)
=.+|..|+...... |+++|..|+.+.
T Consensus 163 ~~~C~~CGE~~~~~------g~~~C~~C~~~~ 188 (191)
T 3d00_A 163 IVLCPQCREAYPAQ------DGELCLSCQGGS 188 (191)
T ss_dssp EEECTTTCCEEEGG------GCSSCHHHHTTC
T ss_pred CEECCcCCCChhhC------CCcCCccccCCC
Confidence 34577777544332 889999998754
No 179
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.79 E-value=50 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=19.1
Q ss_pred cccccccccccccC---CCe--eecCCeeeccccHHHH
Q 029230 35 ACFRCHHCKGTLKL---SNF--NSFEGVLYCRPHFDQL 67 (197)
Q Consensus 35 ~CF~C~~C~~~L~~---~~f--~~~~g~~yC~~c~~~~ 67 (197)
.=|.|+.|++.+.. ... ...-..+.|+.|+...
T Consensus 7 ~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y 44 (129)
T 3ql9_A 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYY 44 (129)
T ss_dssp CSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHH
T ss_pred CceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhh
Confidence 34678888887741 112 2223467788887543
No 180
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.70 E-value=60 Score=20.86 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhc
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFR 167 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~ 167 (197)
..|..|++.-...+.|. .-++.||..|.. .+|.. +-.+.-||..|..+..+
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~~----~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLPE----IPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCSS----CCSSCCCCHHHHHHHHS
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCccc----CCCCCcCCccCcCcccc
Confidence 57999987643333443 445789988763 23432 23467899999876543
No 181
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=30.58 E-value=66 Score=18.39 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=18.0
Q ss_pred ccCcCCCCCCC-CCeeeeCCeeecHHHHHh
Q 029230 136 KCSHGGCTISP-SNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 136 ~C~~C~~~l~~-~~~~~~dg~~yC~~cy~~ 164 (197)
+|+.|+++-.. .....-.|...|..|-..
T Consensus 13 ~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 13 YCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred EecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 57888876543 333434566788888654
No 182
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=30.50 E-value=20 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=15.9
Q ss_pred CCCCCCCceeecCcee--eecCcccccccc
Q 029230 108 DKCVGCDRTVYPTEKV--SVNGAAYHRSCF 135 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v--~~~g~~~H~~CF 135 (197)
..|+.|...+..++.+ ..-+..||..|+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 4577777666554432 234556666655
No 183
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.16 E-value=8.2 Score=35.15 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCC
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTI 144 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l 144 (197)
+.|..|.+ |+-...++.||-.=-.|..||-.|
T Consensus 157 ~mC~~C~~-----EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 157 PMCDFCRS-----EYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp CCCHHHHH-----HHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred CCChhHHH-----HhCCCCCCCCcCCCCCCccCCceE
Confidence 56777753 334566777887777777777665
No 184
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.41 E-value=45 Score=19.77 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=27.8
Q ss_pred CCCCCCCceeecCceeeecC-----ccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 108 DKCVGCDRTVYPTEKVSVNG-----AAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g-----~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
..| .|+++-. +++|.-.+ ..||..|.. |... ..++.||..|-.+
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHTC
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCcccC
Confidence 456 7988743 56665444 678988763 3221 2478899988643
No 185
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=29.37 E-value=66 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=19.1
Q ss_pred ccCcCCCCCCC-CCeeeeCCeeecHHHHHhH
Q 029230 136 KCSHGGCTISP-SNYIAHEGKLYCKHHHIQL 165 (197)
Q Consensus 136 ~C~~C~~~l~~-~~~~~~dg~~yC~~cy~~~ 165 (197)
+|+.|+++-.. ...+.-.|...|..|-...
T Consensus 20 ~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 20 YCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred EecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 58888876553 3344445677888886543
No 186
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.00 E-value=24 Score=15.53 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=8.1
Q ss_pred cccCcCCCCCCC
Q 029230 135 FKCSHGGCTISP 146 (197)
Q Consensus 135 F~C~~C~~~l~~ 146 (197)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567777776654
No 187
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.77 E-value=58 Score=19.04 Aligned_cols=44 Identities=20% Similarity=0.577 Sum_probs=26.9
Q ss_pred CCCCCCCceeecCceeeecC-----ccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 108 DKCVGCDRTVYPTEKVSVNG-----AAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g-----~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
..| .|+++-. +++|.-.+ ..||..|.. |... ..|..||..|-.+
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC-
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccCc
Confidence 456 7988743 66565444 568988864 3221 1367889988654
No 188
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.17 E-value=36 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=16.0
Q ss_pred CCCCCCCceeecCce---eeecCcccc
Q 029230 108 DKCVGCDRTVYPTEK---VSVNGAAYH 131 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~---v~~~g~~~H 131 (197)
..|.-|+.+|+++.. |..+|+.|+
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEE
Confidence 678899999988853 334445443
No 189
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.12 E-value=30 Score=20.99 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.5
Q ss_pred CCCCCCCceee
Q 029230 108 DKCVGCDRTVY 118 (197)
Q Consensus 108 ~~C~~C~~~I~ 118 (197)
.+|..|++.+.
T Consensus 16 ~rC~~C~kkvg 26 (64)
T 1wfh_A 16 NRCTVCRKRVG 26 (64)
T ss_dssp CCCTTTCCCCC
T ss_pred CcChhhCCccC
Confidence 78888888764
No 190
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.94 E-value=68 Score=17.72 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=7.6
Q ss_pred CeeecHHHHHhHh
Q 029230 154 GKLYCKHHHIQLF 166 (197)
Q Consensus 154 g~~yC~~cy~~~~ 166 (197)
|..||..|..+.+
T Consensus 34 gH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 34 GHNFCKACITRWW 46 (58)
T ss_dssp CCCCCHHHHHHHT
T ss_pred CCccCHHHHHHHH
Confidence 5556666665553
No 191
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=26.74 E-value=98 Score=20.28 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=30.4
Q ss_pred cccCcCCCCCCCCCeeeeCCeeecHHHHHhHh--cCCCCCCCCCCchhhh
Q 029230 135 FKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF--REKGNYSQLESDLEKS 182 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~--~~k~~~~~~~~~~~~~ 182 (197)
+-|..|- +.....+.-.+..+|..|...++ +.+|..|....+....
T Consensus 29 ~nCKsCW--f~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCW--FENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSC--SCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhc--cccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 3444444 33345666678888999987764 5778888877776544
No 192
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=26.55 E-value=80 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=19.1
Q ss_pred cccccccccccccCC---Ce--eecCCeeeccccHHHH
Q 029230 35 ACFRCHHCKGTLKLS---NF--NSFEGVLYCRPHFDQL 67 (197)
Q Consensus 35 ~CF~C~~C~~~L~~~---~f--~~~~g~~yC~~c~~~~ 67 (197)
.=+.|+.|+..+... .. ...-+...|..|+...
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y 50 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYY 50 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHH
T ss_pred CCCEecCCCCccccccccchhcCCCccccccHHHHHHH
Confidence 336777787777421 12 2224566788887544
No 193
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.44 E-value=27 Score=15.57 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=8.1
Q ss_pred cccCcCCCCCCC
Q 029230 135 FKCSHGGCTISP 146 (197)
Q Consensus 135 F~C~~C~~~l~~ 146 (197)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 567777776654
No 194
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.17 E-value=26 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.2
Q ss_pred CCCCCCCceeecCc
Q 029230 108 DKCVGCDRTVYPTE 121 (197)
Q Consensus 108 ~~C~~C~~~I~~~e 121 (197)
..|.+|++||....
T Consensus 18 RvC~~CgkPi~lsA 31 (44)
T 2lo3_A 18 RVCEKCGKPLALTA 31 (44)
T ss_dssp EECTTTCCEEETTT
T ss_pred hhhcccCCcchHHH
Confidence 47999999997543
No 195
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=25.63 E-value=32 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=11.9
Q ss_pred CCCCCCCceeecCce
Q 029230 108 DKCVGCDRTVYPTEK 122 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~ 122 (197)
..|.-|+.+|+|+..
T Consensus 4 ~~C~Fcg~~IyPG~G 18 (66)
T 1vq8_U 4 RECDYCGTDIEPGTG 18 (66)
T ss_dssp CBCTTTCCBCCSSCC
T ss_pred eEecCcCCcccCCCc
Confidence 678888888888853
No 196
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=24.81 E-value=53 Score=19.14 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=17.5
Q ss_pred ccccccccccCCCeee-cCCee-eccccHHHHhh
Q 029230 38 RCHHCKGTLKLSNFNS-FEGVL-YCRPHFDQLFK 69 (197)
Q Consensus 38 ~C~~C~~~L~~~~f~~-~~g~~-yC~~c~~~~~~ 69 (197)
.|..|.....+..+.. .=|+. +|..|..++..
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~ 42 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK 42 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH
Confidence 3555554443322321 23555 89999887664
No 197
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.44 E-value=40 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCCCCCCceeecCceeeecCccccccccccCcCCCCCCCCCeee
Q 029230 108 DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIA 151 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~~~~ 151 (197)
..|+.|++... ....-..| .|..|+..+.++.|..
T Consensus 28 y~Cp~CG~~~v----~r~atGiW-----~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 28 HACPNCGEDRV----DRQGTGIW-----QCSYCDYKFTGGSYKP 62 (83)
T ss_dssp EECSSSCCEEE----EEEETTEE-----EETTTCCEEECCSSSS
T ss_pred CcCCCCCCcce----eccCCCeE-----ECCCCCCEecCCEecc
Confidence 57999997553 12223344 5899999988876653
No 198
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=24.15 E-value=69 Score=19.38 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=16.1
Q ss_pred ccCcCCCCCCCCCeeeeCCeeecHHHHH
Q 029230 136 KCSHGGCTISPSNYIAHEGKLYCKHHHI 163 (197)
Q Consensus 136 ~C~~C~~~l~~~~~~~~dg~~yC~~cy~ 163 (197)
.|..|+..-+..---..+|..+|..|..
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl 38 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGL 38 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHH
Confidence 3555554433322234467899999954
No 199
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.10 E-value=63 Score=18.86 Aligned_cols=44 Identities=20% Similarity=0.582 Sum_probs=27.3
Q ss_pred CCCCCCCceeecCceeeecC-----ccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 108 DKCVGCDRTVYPTEKVSVNG-----AAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~~~g-----~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
..| .|+++-. +++|.-.+ ..||..|.. |... ..+.-||..|-.+
T Consensus 10 ~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHCC
T ss_pred cEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccCc
Confidence 456 7988753 66665444 578988864 3221 1267889888543
No 200
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.71 E-value=52 Score=21.75 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCCCCCceeecC-ceeeec---CccccccccccCcCCCCCCCCCee----eeCCeeecHHHHHhH
Q 029230 108 DKCVGCDRTVYPT-EKVSVN---GAAYHRSCFKCSHGGCTISPSNYI----AHEGKLYCKHHHIQL 165 (197)
Q Consensus 108 ~~C~~C~~~I~~~-e~v~~~---g~~~H~~CF~C~~C~~~l~~~~~~----~~dg~~yC~~cy~~~ 165 (197)
..|..|+++..+. ++|.-. ...||..|- .|+...+. ..++..+|..|-.+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC-------CcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999997554 445444 467887773 34432221 235789999998754
No 201
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.58 E-value=38 Score=14.89 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=7.6
Q ss_pred cccCcCCCCCCC
Q 029230 135 FKCSHGGCTISP 146 (197)
Q Consensus 135 F~C~~C~~~l~~ 146 (197)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 457777766654
No 202
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.57 E-value=33 Score=15.46 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=8.5
Q ss_pred cccCcCCCCCCC
Q 029230 135 FKCSHGGCTISP 146 (197)
Q Consensus 135 F~C~~C~~~l~~ 146 (197)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 577888877654
No 203
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.49 E-value=73 Score=20.02 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=19.9
Q ss_pred cccCcCCCCCCCCCeee-e-CCeeecHHHHHhHh
Q 029230 135 FKCSHGGCTISPSNYIA-H-EGKLYCKHHHIQLF 166 (197)
Q Consensus 135 F~C~~C~~~l~~~~~~~-~-dg~~yC~~cy~~~~ 166 (197)
|.|..|-..+.....+. . =|..||..|..+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 45666665555444433 2 38889999976654
No 204
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.29 E-value=24 Score=15.70 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.5
Q ss_pred cccccccccccC
Q 029230 37 FRCHHCKGTLKL 48 (197)
Q Consensus 37 F~C~~C~~~L~~ 48 (197)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 678888877653
No 205
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.37 E-value=51 Score=19.94 Aligned_cols=11 Identities=36% Similarity=1.171 Sum_probs=6.8
Q ss_pred Cccccccccce
Q 029230 9 QQKCMACDKTV 19 (197)
Q Consensus 9 ~~~C~~C~~~I 19 (197)
..+|..|++.+
T Consensus 15 ~~rC~~C~kkv 25 (64)
T 1wg2_A 15 NNRCFSCNKKV 25 (64)
T ss_dssp SCSCTTTCCCC
T ss_pred CCcChhhCCcc
Confidence 35677776654
No 206
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.29 E-value=37 Score=15.08 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=8.4
Q ss_pred cccCcCCCCCCC
Q 029230 135 FKCSHGGCTISP 146 (197)
Q Consensus 135 F~C~~C~~~l~~ 146 (197)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 567788777654
No 207
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.25 E-value=41 Score=20.99 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=8.4
Q ss_pred CCCCCCCceee
Q 029230 108 DKCVGCDRTVY 118 (197)
Q Consensus 108 ~~C~~C~~~I~ 118 (197)
.+|..|++.+.
T Consensus 26 ~RC~~C~kkvg 36 (74)
T 1wfp_A 26 TRCLSCNKKVG 36 (74)
T ss_dssp CBCSSSCCBCT
T ss_pred ccchhhcCccc
Confidence 68888887764
No 208
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.04 E-value=82 Score=17.93 Aligned_cols=47 Identities=32% Similarity=0.573 Sum_probs=26.3
Q ss_pred CCCCCccccccccceecceeEEeC--CccccccccccccccccccCCCeeecCCeeecccc
Q 029230 5 FGGTQQKCMACDKTVYLVDKLTAD--NRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPH 63 (197)
Q Consensus 5 ~~~~~~~C~~C~~~I~~~~~~~~~--g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c 63 (197)
.......|..|++. ++.|.-. .+.||..|+.= +|.. ...+.-+|..|
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~p-----pl~~----~p~g~W~C~~C 53 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRC 53 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSS-----CCCS----CCCSSCCCHHH
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCC-----CcCC----CCCCceEChhh
Confidence 34455779999874 4555333 35688877541 2321 12456667666
No 209
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.86 E-value=1.4e+02 Score=18.07 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCCCCCCcee--ecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHh
Q 029230 108 DKCVGCDRTV--YPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLF 166 (197)
Q Consensus 108 ~~C~~C~~~I--~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~ 166 (197)
..|..|++.- ..++.|. .-++.||..|..=. + +-+|.-||..|..+.-
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----~------vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y------IPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----S------CCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----c------CCCCCcCCccCcCcCc
Confidence 6799998763 2233343 44568998886422 1 2347789999977653
No 210
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.65 E-value=84 Score=22.95 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=26.6
Q ss_pred ccccccCcCCCCCCCCCeeeeCCeeecHHHHHhHhcC
Q 029230 132 RSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFRE 168 (197)
Q Consensus 132 ~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~~~~~ 168 (197)
+.-|.|..|...+.. ......|..||+.|-.+-+..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~ 139 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQR 139 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHh
Confidence 566888888776654 556678999999997776643
No 211
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.64 E-value=20 Score=15.78 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=8.5
Q ss_pred cccccccccccC
Q 029230 37 FRCHHCKGTLKL 48 (197)
Q Consensus 37 F~C~~C~~~L~~ 48 (197)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 567888877654
No 212
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.98 E-value=47 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=9.5
Q ss_pred CCCCCCCceeec
Q 029230 108 DKCVGCDRTVYP 119 (197)
Q Consensus 108 ~~C~~C~~~I~~ 119 (197)
..|+.|..+|..
T Consensus 47 ~~CP~CR~~i~~ 58 (68)
T 2ea5_A 47 QQCPMCRQFVQE 58 (68)
T ss_dssp SSCTTTCCCCCC
T ss_pred CCCCCCCcchhc
Confidence 569999998863
No 213
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.83 E-value=96 Score=18.82 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=28.3
Q ss_pred CCccccccccceecceeEEeCC-----ccccccccccccccccccCCCeeecCCeeeccccH
Q 029230 8 TQQKCMACDKTVYLVDKLTADN-----RVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHF 64 (197)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~g-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (197)
....| .|+++-. +++|.-++ .-||..|.. |... ..+..||..|-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~ 63 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCS 63 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCC
Confidence 34567 6988754 67776665 457988875 3221 23678898885
No 214
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.34 E-value=1.3e+02 Score=17.51 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=26.3
Q ss_pred CCCCCCCceeecCceee--ecCccccccccccCcCCCCCCCCCeeeeCCeeecHHHHHh
Q 029230 108 DKCVGCDRTVYPTEKVS--VNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQ 164 (197)
Q Consensus 108 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~~~~~dg~~yC~~cy~~ 164 (197)
..|..|++ .++.|. .-.+.||..|.. .+|.. .-.|.-||..|..+
T Consensus 10 ~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDTCPSSYHIHCLN-----PPLPE----IPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCC---CSSCBCCSSSCCCBCSSSSS-----SCCSS----CCSSCCCCTTTTTT
T ss_pred CcCCCCCC---CCCEEEcCCCCHHHcccccC-----CCcCc----CCCCccCChhhcCc
Confidence 57888985 244443 445678888753 22322 22456778877544
Done!