BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029231
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LVH|D Chain D, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|E Chain E, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|F Chain F, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 205
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 57 EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKL 116
+ A+G +DG +D + +E ++R+WR E RL M + E+A++
Sbjct: 77 QEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 136
Query: 117 EFYRKSIVTRENNKASNR 134
E+ ++ E NK +NR
Sbjct: 137 EWNQRQSEQVEKNKINNR 154
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 9 SVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG 61
+ VA + + DD +QL ++L N ++ G+ +F +T + DG
Sbjct: 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDG 133
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 23 AEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVY 55
A QLN+ VDL D N S+Q D+ +T +
Sbjct: 333 ASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYF 365
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQETK-------GPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQETK-------GPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 6 SVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDG 65
S D + + YT +F + +DLS NNS + DDA+ASQ + G DG
Sbjct: 373 SYDMIGINYYTSTF-------SKHIDLSP--NNSPVLNTDDAYASQETK-------GPDG 416
Query: 66 PILPPPS 72
+ PP+
Sbjct: 417 NAIGPPT 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,412,339
Number of Sequences: 62578
Number of extensions: 196730
Number of successful extensions: 452
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 17
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)