BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029231
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
Length = 258
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 21/145 (14%)
Query: 5 DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
D+ +SVPV + SFD D+ + ++ + D S DD FA+ +S YG Y++G
Sbjct: 15 DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63
Query: 62 ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
GS DGPILPPPS+M +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64 GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123
Query: 115 KLEFYRKSIVTRENNKASNREREKV 139
K EF++K VT ENNKA+NRE+EK+
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEKL 148
>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2
SV=1
Length = 258
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 59/72 (81%)
Query: 67 ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126
ILPPPS M EEGFALREWRR NA+RLEEKEK+EKEM+ QI+E AE+YK EFY K VT
Sbjct: 85 ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144
Query: 127 ENNKASNREREK 138
ENNK NRE+EK
Sbjct: 145 ENNKKLNREKEK 156
>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica
GN=Os04g0679100 PE=2 SV=1
Length = 301
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 58/78 (74%)
Query: 62 GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
G DGPILPPP+ M EEG LREWRR+NAI LEEKE+KEKE+ QI+ EAEE+K FY K
Sbjct: 92 GGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKELRAQILAEAEEFKKAFYEK 151
Query: 122 SIVTRENNKASNREREKV 139
I E NK NREREK+
Sbjct: 152 RIQNCETNKVHNREREKI 169
>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2
SV=1
Length = 338
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 63 SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
SDGPILP P++M EEGF REWRR N I LEEKEKKEKEM NQII EAE++K FY K
Sbjct: 93 SDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKR 151
Query: 123 IVTRENNKASNREREKV 139
T E NK NRE+EK+
Sbjct: 152 DKTIETNKTDNREKEKL 168
>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica
GN=Os06g0731800 PE=2 SV=1
Length = 291
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 9/95 (9%)
Query: 45 DDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEML 104
DD FA+ + +GP+LPPP+ M +EGF LREWRR+NAI LEEKEKKEKEM
Sbjct: 66 DDPFAAPDN---------DNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMR 116
Query: 105 NQIIEEAEEYKLEFYRKSIVTRENNKASNREREKV 139
NQII +A+E+K F K + E +K NREREK+
Sbjct: 117 NQIILDAKEFKKAFVEKRKLNVETSKDQNREREKL 151
>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica
GN=Os07g0461500 PE=3 SV=1
Length = 363
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 62 GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
G DGP+LPPP M EEG REWRR+NA+ LEEKE+KE+E +II EA+E+K F K
Sbjct: 133 GDDGPVLPPPEAMK-EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEK 191
Query: 122 SIVTRENNKASNREREKV 139
+ + N+A NR+REK+
Sbjct: 192 RKLNGDTNRAQNRDREKL 209
>sp|Q8TCG1|CIP2A_HUMAN Protein CIP2A OS=Homo sapiens GN=KIAA1524 PE=1 SV=2
Length = 905
Score = 34.3 bits (77), Expect = 0.59, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 81 ALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKL-EFYRKSIVTRENNKASNREREKV 139
+L+E ++ +L EKE++ KE+ NQ+++ E+KL ++K+ V E K +ERE
Sbjct: 768 SLKEQNEKSIAQLIEKEEQRKEVQNQLVD--REHKLANLHQKTKVQEEKIKTLQKEREDK 825
Query: 140 SGDFKIL 146
IL
Sbjct: 826 EETIDIL 832
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 60 DGGSDGPILPPPSDMVPEEGFALRE----------WRRENAIRLEEKEKKEKEMLNQIIE 109
D DGP PP VP EGF+L + W + +A + E+ K E E+ +I E
Sbjct: 54 DSSLDGPPGPPDGATVPLEGFSLSQAADLANKGPKWEKSHA-EIAEQAKHEAEIETRIAE 112
Query: 110 EAEE 113
+E
Sbjct: 113 LRKE 116
>sp|P04975|CLCB_BOVIN Clathrin light chain B OS=Bos taurus GN=CLTB PE=1 SV=1
Length = 228
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 59 ADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118
A+G +DG +D + +E ++R+WR E RL+E + K M + E+A++ E+
Sbjct: 79 ANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 138
Query: 119 YRKSIVTRENNKASNR 134
++ E NK +NR
Sbjct: 139 NQRQSEQVEKNKINNR 154
>sp|A8T6P4|MYRIP_DANRE Rab effector MyRIP OS=Danio rerio GN=myrip PE=1 SV=1
Length = 838
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAE-----EYKLEFYRKSIVTRENN 129
RE RRE +++E+K++++KEM Q+ +E E E LE RKSI + N
Sbjct: 787 RERRREIEMQVEKKQERQKEMEKQLKQEQERQSEIERDLEKKRKSIRMEKRN 838
>sp|A2R9H9|INO80_ASPNC Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=ino80 PE=3 SV=1
Length = 1697
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGD 142
R+ RREN +R+E ++KKE E +++ E K +F R++ + K + R E ++
Sbjct: 409 RKRRRENTVRMEMQKKKEAEAKAHEAQDSAE-KAKFLREAERAQRKIKTTKRALEGITAP 467
Query: 143 FKI 145
+I
Sbjct: 468 EEI 470
>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1
Length = 229
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 52 TSVYG---EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G + A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNR 134
E+A++ E+ ++ E NK +NR
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNR 155
>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1
Length = 229
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 52 TSVYG---EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G + A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNR 134
E+A++ E+ ++ E NK +NR
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNR 155
>sp|O97827|LPHN3_BOVIN Latrophilin-3 OS=Bos taurus GN=LPHN3 PE=2 SV=1
Length = 1580
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 29/78 (37%)
Query: 2 STFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG 61
++ ++ VP AE + T D D S G Q Y + G
Sbjct: 1491 TSMPALAGVPTAESVTTSTQTEPPPAKCGDAEDVYYKSMPNLGSRNHVHQLHTYYQLGRG 1550
Query: 62 GSDGPILPPPSDMVPEEG 79
SDG I+PP D P EG
Sbjct: 1551 SSDGFIVPPNKDGTPPEG 1568
>sp|Q750F8|SPB4_ASHGO ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPB4
PE=3 SV=2
Length = 599
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 64 DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI 123
DG ++ PP D+ + FA + +RE A +L +KE K+ + N++ E + E + K
Sbjct: 482 DGWLVSPPIDL---DSFAYADPQREKARKLAKKEAKDVKDNNKLKSEMRKNN-EAWSKKT 537
Query: 124 VTRENN 129
VT+EN
Sbjct: 538 VTKENK 543
>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 52 TSVYG---EYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQII 108
T+V G + A+G +DG +D + +E ++R+WR E RL+E + K +
Sbjct: 70 TTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWR 129
Query: 109 EEAEEYKLEFYRKSIVTRENNKASNR 134
E+A++ E+ ++ E NK +NR
Sbjct: 130 EKAKKDLEEWNQRQSEQVEKNKINNR 155
>sp|Q5BAZ5|INO80_EMENI Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ino80
PE=3 SV=1
Length = 1612
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVS 140
R+ RREN +R+E ++K E E+ +++ E K +F R++ + K + R E V+
Sbjct: 398 RKRRRENTVRMEMQKKLEAELKANETQDSAE-KAKFLREAERAQRKIKTTKRALEGVT 454
>sp|Q4WTV7|INO80_ASPFU Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80
PE=3 SV=1
Length = 1708
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVS 140
R+ RREN +RLE ++K E E +A E K +F R++ + K++ R E V+
Sbjct: 421 RKRRRENTVRLEMQKKLEAERKANKANDAAE-KAKFLREAERAQRKIKSTKRALEGVT 477
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3
SV=1
Length = 1708
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVS 140
R+ RREN +RLE ++K E E +A E K +F R++ + K++ R E V+
Sbjct: 421 RKRRRENTVRLEMQKKLEAERKANKANDAAE-KAKFLREAERAQRKIKSTKRALEGVT 477
>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624
/ FGSC A1156) GN=ino80 PE=3 SV=1
Length = 1690
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGD 142
R+ RREN +RLE ++K E E +++ E K +F R++ + K + R E V+
Sbjct: 411 RKRRRENTVRLEMQKKLEAERKANKAQDSAE-KAKFLREAERAQRKIKTTKRALEGVTAP 469
Query: 143 FKI 145
+I
Sbjct: 470 EEI 472
>sp|P27738|RDRP_ACLSP RNA-directed RNA polymerase OS=Apple chlorotic leaf spot virus
(isolate plum P863) PE=4 SV=1
Length = 1884
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 100 EKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRE---REKVSGDFKILLVFVACFSFL 156
++E+L+++ + +E F + I E K N EK F V+++ F+++
Sbjct: 9 QEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSFYLPEKTREWFTKSGVYLSPFAYV 68
Query: 157 NKSHCGCM----HVMFVIIYVCFDLFMYLMLVQIFSN 189
N SH GC H++F ++ + Y+ + I SN
Sbjct: 69 NHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSN 105
>sp|B9DUP8|MIAA_STRU0 tRNA dimethylallyltransferase OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=miaA PE=3 SV=1
Length = 301
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 73 DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQ 106
D++ E+ +L+EW R AIR E ++ K++ NQ
Sbjct: 142 DLMAEKNISLKEWTRRRAIRAIELDRFGKDLQNQ 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,583,961
Number of Sequences: 539616
Number of extensions: 3098804
Number of successful extensions: 17529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 17110
Number of HSP's gapped (non-prelim): 456
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)