Query 029231
Match_columns 197
No_of_seqs 38 out of 40
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 15:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_J LCA, clathrin light cha 99.4 2.5E-12 8.5E-17 92.6 8.1 69 69-140 1-69 (70)
2 3lvg_D LCB, clathrin light cha 99.3 7.1E-13 2.4E-17 110.7 1.5 90 54-143 59-148 (190)
3 3lvh_D LCB, clathrin light cha 98.9 1.6E-09 5.5E-14 91.4 7.1 86 57-143 77-163 (205)
4 2v4h_A NF-kappa-B essential mo 55.4 70 0.0024 24.7 9.3 77 67-147 14-103 (110)
5 4a17_V RPL7, 60S ribosomal pro 45.2 61 0.0021 27.3 6.9 45 83-127 17-61 (239)
6 3brv_B NF-kappa-B essential mo 43.7 33 0.0011 24.8 4.4 46 70-115 6-63 (70)
7 3fx0_A NF-kappa-B essential mo 39.4 49 0.0017 25.1 4.9 41 102-146 55-95 (96)
8 1pd7_B MAD1; PAH2, SIN3, eukar 35.5 33 0.0011 20.9 2.8 18 106-127 6-23 (26)
9 1ij5_A Plasmodial specific LAV 35.4 37 0.0013 27.7 4.0 32 84-115 13-53 (323)
10 4h3z_A TRNA (guanine-N(1)-)-me 34.1 34 0.0012 29.9 3.8 23 70-92 217-239 (276)
11 3lvh_D LCB, clathrin light cha 34.0 1.4E+02 0.0049 25.2 7.4 54 80-133 103-157 (205)
12 1a92_A Delta antigen; leucine 33.1 77 0.0026 21.7 4.6 29 80-108 4-34 (50)
13 3frt_A Charged multivesicular 33.0 1E+02 0.0035 25.3 6.3 44 81-124 11-69 (218)
14 3ryc_E Stathmin-4; alpha-tubul 32.8 1.9E+02 0.0064 23.1 9.0 51 89-139 66-127 (143)
15 1gmj_A ATPase inhibitor; coile 31.6 1.3E+02 0.0045 22.1 6.1 51 61-118 9-60 (84)
16 3izc_e 60S ribosomal protein R 30.8 1.1E+02 0.0038 25.7 6.3 39 84-122 21-59 (244)
17 3jsv_C NF-kappa-B essential mo 29.5 1.8E+02 0.0061 21.8 7.6 39 104-146 42-80 (94)
18 1srq_A RAP1GAP, GTPase-activat 29.5 1.2E+02 0.0041 26.3 6.5 30 64-95 271-300 (341)
19 3iz5_e 60S ribosomal protein L 28.7 81 0.0028 26.6 5.1 27 95-121 34-60 (244)
20 3lvg_D LCB, clathrin light cha 28.6 1.1E+02 0.0039 25.6 5.9 76 71-146 79-161 (190)
21 1nkw_F 50S ribosomal protein L 28.4 61 0.0021 25.1 4.0 35 84-118 37-71 (146)
22 4gdk_C APG16-like 1, autophagy 27.7 65 0.0022 20.5 3.3 26 84-109 5-30 (36)
23 2kog_A Vesicle-associated memb 27.1 2E+02 0.0067 21.5 8.1 12 138-149 91-102 (119)
24 1div_A Ribosomal protein L9; r 25.5 1.1E+02 0.0038 23.6 5.0 34 85-118 39-72 (149)
25 1xou_B Z5138 gene product; coi 25.0 1.1E+02 0.0038 23.0 4.7 31 87-117 7-37 (95)
26 3hpw_C Protein CCDA; alpha+bet 24.9 39 0.0013 21.2 1.9 14 82-95 5-18 (36)
27 3sde_A Paraspeckle component 1 24.0 1.5E+02 0.0051 22.8 5.5 12 63-74 201-212 (261)
28 3e98_A GAF domain of unknown f 23.6 2E+02 0.007 23.4 6.5 52 79-133 66-117 (252)
29 1o4v_A Phosphoribosylaminoimid 21.9 1.2E+02 0.004 25.0 4.7 22 77-98 147-168 (183)
30 4aqr_D Calcium-transporting AT 21.4 2.1E+02 0.0072 19.8 6.0 9 80-88 4-12 (57)
31 2qyb_A Membrane protein, putat 21.2 22 0.00074 24.4 0.2 42 69-110 132-179 (181)
32 2q5z_A MAZG, hypothetical prot 20.5 2E+02 0.0067 20.6 5.2 46 67-119 14-59 (114)
No 1
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=99.35 E-value=2.5e-12 Score=92.58 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=62.6
Q ss_pred CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhhhhhh
Q 029231 69 PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVS 140 (197)
Q Consensus 69 PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NREKEKly 140 (197)
|||.++++ ..+|+||.++..+|++|+..+++++..+++.|..++..||+.+....+.+|++||..++-|
T Consensus 1 ~~~~~~Ep---E~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~F 69 (70)
T 1xi4_J 1 VDRLQSEP---ESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAF 69 (70)
T ss_pred CCCcccCc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46666554 4999999999999999999999999999999999999999999999999999999887543
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=99.27 E-value=7.1e-13 Score=110.67 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=83.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhch
Q 029231 54 VYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (197)
Q Consensus 54 ~f~p~~ng~sdGPiLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~N 133 (197)
.+.+++||.+||+..+++.++..+|...+|+||.+...+|++|+..+++++..+++.|.+-..+||+.+...+|.+|++|
T Consensus 59 d~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~N 138 (190)
T 3lvg_D 59 XXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138 (190)
T ss_dssp CCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688889999999988888877999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchh
Q 029231 134 REREKVSGDF 143 (197)
Q Consensus 134 REKEKly~~~ 143 (197)
|+.|+-+.+=
T Consensus 139 R~aEEeFLaq 148 (190)
T 3lvg_D 139 RIADKAFYQQ 148 (190)
T ss_dssp CSSTTTSSHH
T ss_pred HHHHHHHHhC
Confidence 9999988653
No 3
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=98.92 E-value=1.6e-09 Score=91.37 Aligned_cols=86 Identities=27% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCC-CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhh
Q 029231 57 EYADGGSDGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRE 135 (197)
Q Consensus 57 p~~ng~sdGPiL-PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NRE 135 (197)
-++||.+|+..- ..+...+ +|-..+|+||.+...+|++|+..+++++..+++.|.+-+.+||+.+...++.+|++||.
T Consensus 77 qesngp~d~yaai~qad~le-eEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ 155 (205)
T 3lvh_D 77 QEANGPADGYAAIAQADRLT-QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 155 (205)
T ss_dssp --------------CCSTTT-BSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCCCccchhhhccccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456665555332 2233333 88899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchh
Q 029231 136 REKVSGDF 143 (197)
Q Consensus 136 KEKly~~~ 143 (197)
.|+-+.+=
T Consensus 156 aeeeFlaq 163 (205)
T 3lvh_D 156 ADKAFYQQ 163 (205)
T ss_dssp STTTSSHH
T ss_pred HHHHHHhC
Confidence 99987653
No 4
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=55.44 E-value=70 Score=24.70 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhhhHhhhhhch
Q 029231 67 ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIE-------------EAEEYKLEFYRKSIVTRENNKASN 133 (197)
Q Consensus 67 iLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~-------------EAeeyK~eFYeKR~~n~EtnKa~N 133 (197)
+.|..+-|..-|..-|..=-..=...|++|...=.+++..|.. -++.|+.-|...|. .+-..|
T Consensus 14 ~~~~~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa----dREkl~ 89 (110)
T 2v4h_A 14 LVPRGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH----AREKLV 89 (110)
T ss_dssp CCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred CCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh----hHHHHH
Confidence 4577777766666666654444445566666555554444432 57789999999885 345567
Q ss_pred hhhhhhhchhhhHH
Q 029231 134 REREKVSGDFKILL 147 (197)
Q Consensus 134 REKEKly~~~~~~~ 147 (197)
-|||.+......|.
T Consensus 90 ~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77888877766553
No 5
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=45.19 E-value=61 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 029231 83 REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRE 127 (197)
Q Consensus 83 REWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~E 127 (197)
.+|+...+.+..+..++.++.+..|.+.|+.|-.+|..+....+.
T Consensus 17 ~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir 61 (239)
T 4a17_V 17 EKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346655555555555566788889999999999998866554443
No 6
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=43.72 E-value=33 Score=24.81 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCCCc--chhhHhHHHHHHhhHhhH----------HHHHHHHHHHHHHHHHHHHHH
Q 029231 70 PPSDMVP--EEGFALREWRRENAIRLE----------EKEKKEKEMLNQIIEEAEEYK 115 (197)
Q Consensus 70 pP~eM~~--EEG~~LREWRRQNAi~LE----------EKEk~EKE~r~QII~EAeeyK 115 (197)
+|+.|+. .|---||+=-|||.+.|. +|+|+||+.+..=..||.+..
T Consensus 6 ~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv 63 (70)
T 3brv_B 6 APETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLV 63 (70)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566643 677778998899988775 578888888887777776543
No 7
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=39.40 E-value=49 Score=25.10 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhhhhhhchhhhH
Q 029231 102 EMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGDFKIL 146 (197)
Q Consensus 102 E~r~QII~EAeeyK~eFYeKR~~n~EtnKa~NREKEKly~~~~~~ 146 (197)
|.-.-.-.-++.|+.-|...|. .+-..+-|||.+...+..|
T Consensus 55 E~i~vL~aQ~~iY~~DF~aERa----aREk~~~EKe~L~~ql~~l 95 (96)
T 3fx0_A 55 ETVPVLKAQADIYKADFQAERQ----AREKLAEKKELLQEQLEQL 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHTSSTTSCC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHhh
Confidence 4444456789999999999985 4556677788777665443
No 8
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=35.54 E-value=33 Score=20.87 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHh
Q 029231 106 QIIEEAEEYKLEFYRKSIVTRE 127 (197)
Q Consensus 106 QII~EAeeyK~eFYeKR~~n~E 127 (197)
|++-+|++|.+ +|+..||
T Consensus 6 q~LLeAAeyLE----rrEre~E 23 (26)
T 1pd7_B 6 QMLLEAADYLE----RREREAE 23 (26)
T ss_dssp HHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH----HHHHhhh
Confidence 67778888765 5555444
No 9
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=35.42 E-value=37 Score=27.68 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=17.8
Q ss_pred HHHHH--hhHhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 029231 84 EWRRE--NAIRLEEKEK-------KEKEMLNQIIEEAEEYK 115 (197)
Q Consensus 84 EWRRQ--NAi~LEEKEk-------~EKE~r~QII~EAeeyK 115 (197)
.||++ |+..|.+|+- .++..+.+-+..+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (323)
T 1ij5_A 13 NVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQ 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 47764 7777877764 34445555555555543
No 10
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=34.12 E-value=34 Score=29.85 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=14.6
Q ss_pred CCCCCCcchhhHhHHHHHHhhHh
Q 029231 70 PPSDMVPEEGFALREWRRENAIR 92 (197)
Q Consensus 70 pP~eM~~EEG~~LREWRRQNAi~ 92 (197)
.|+-+-.---...++|||+.++.
T Consensus 217 VPeVLlSGnH~~I~~WR~~qsl~ 239 (276)
T 4h3z_A 217 VPDVLLGGHHAEIEQWRRREALR 239 (276)
T ss_dssp CCHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHHHHHH
Confidence 34433323345789999998875
No 11
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=34.00 E-value=1.4e+02 Score=25.17 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=42.4
Q ss_pred hHhHHHHHHhhHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhch
Q 029231 80 FALREWRRENAIRL-EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (197)
Q Consensus 80 ~~LREWRRQNAi~L-EEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~N 133 (197)
-.-||=+++=...+ ++-++++.|.+.+-.++-+++-+.+=++.+.|..+|++..
T Consensus 103 RkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~ae 157 (205)
T 3lvh_D 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157 (205)
T ss_dssp HHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35666666555555 4445667789999999999999999999999999999864
No 12
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=33.12 E-value=77 Score=21.73 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred hHhHHH--HHHhhHhhHHHHHHHHHHHHHHH
Q 029231 80 FALREW--RRENAIRLEEKEKKEKEMLNQII 108 (197)
Q Consensus 80 ~~LREW--RRQNAi~LEEKEk~EKE~r~QII 108 (197)
.+|-+| -|+++..||++-|+.|....++=
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iKklE 34 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIKKLE 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578899 47788889888888777665543
No 13
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=32.98 E-value=1e+02 Score=25.34 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=23.9
Q ss_pred HhHHHHHH---hhHhhH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhh
Q 029231 81 ALREWRRE---NAIRLE----EKEKKEKEMLNQIIEE--------AEEYKLEFYRKSIV 124 (197)
Q Consensus 81 ~LREWRRQ---NAi~LE----EKEk~EKE~r~QII~E--------AeeyK~eFYeKR~~ 124 (197)
.+|+|+|. +.-.|+ +=++.||....+|... |..|-++..++|+.
T Consensus 11 ~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~ 69 (218)
T 3frt_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA 69 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 58999873 333222 2344555555666544 44555666655543
No 14
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=32.79 E-value=1.9e+02 Score=23.05 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=31.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhHhhhhhchhhhhhh
Q 029231 89 NAIRLEEKEKKEKEMLNQIIEEAEEYKLEFY-----------RKSIVTRENNKASNREREKV 139 (197)
Q Consensus 89 NAi~LEEKEk~EKE~r~QII~EAeeyK~eFY-----------eKR~~n~EtnKa~NREKEKl 139 (197)
=..+|.+|-.+++|.+.+-+++...|.+.== ++|+..+.+-+..-+++|++
T Consensus 66 ~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek~kh 127 (143)
T 3ryc_E 66 LLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 127 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888777655544433 44444444444444555543
No 15
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.59 E-value=1.3e+02 Score=22.11 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCcchhhHhHHHHHHhh-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 61 GGSDGPILPPPSDMVPEEGFALREWRRENA-IRLEEKEKKEKEMLNQIIEEAEEYKLEF 118 (197)
Q Consensus 61 g~sdGPiLPpP~eM~~EEG~~LREWRRQNA-i~LEEKEk~EKE~r~QII~EAeeyK~eF 118 (197)
|+++|+|- ++--.|--||=.+.+. .+-++||+-.+ ++.+++++.+.++.+.
T Consensus 9 gggggsir------~aggaFgKrEaA~Ee~YfrqkekEqL~~-LKkkl~~el~~h~~ei 60 (84)
T 1gmj_A 9 RSSAGAVR------DAGGAFGKREQAEEERYFRARAKEQLAA-LKKHKENEISHHAKEI 60 (84)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCccc------ccCCCcccHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45555553 3344555555444433 22333333332 5666666666665544
No 16
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=30.84 E-value=1.1e+02 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029231 84 EWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122 (197)
Q Consensus 84 EWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR 122 (197)
+|+-+.+....++.++.++.+..|...||.|-.++..+-
T Consensus 21 ~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~ 59 (244)
T 3izc_e 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAE 59 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355555544444445567778889999999999887543
No 17
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=29.50 E-value=1.8e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhchhhhhhhhchhhhH
Q 029231 104 LNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKVSGDFKIL 146 (197)
Q Consensus 104 r~QII~EAeeyK~eFYeKR~~n~EtnKa~NREKEKly~~~~~~ 146 (197)
-.-.-.-++.|+.-|...|.. +-..|-|||.+......|
T Consensus 42 i~vLk~Qv~IY~~DF~aERad----REkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHA----REKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHH
Confidence 333456789999999999853 445566677766665544
No 18
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=29.47 E-value=1.2e+02 Score=26.33 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCcchhhHhHHHHHHhhHhhHH
Q 029231 64 DGPILPPPSDMVPEEGFALREWRRENAIRLEE 95 (197)
Q Consensus 64 dGPiLPpP~eM~~EEG~~LREWRRQNAi~LEE 95 (197)
=||.||.| +--.-+..+|+|=|+.+|--|.
T Consensus 271 fgP~lp~~--~v~~k~~~~~~fll~klINae~ 300 (341)
T 1srq_A 271 FGPPLPDP--AVFRKGPEFQEFLLTKLINAEY 300 (341)
T ss_dssp CSSCCCTT--CEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC--ceecCcHHHHHHHHHHHHHHHH
Confidence 36666655 3334567889999987765544
No 19
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=28.69 E-value=81 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 95 EKEKKEKEMLNQIIEEAEEYKLEFYRK 121 (197)
Q Consensus 95 EKEk~EKE~r~QII~EAeeyK~eFYeK 121 (197)
++.++.++.+..|...||.|-.++..+
T Consensus 34 ~~k~~~k~~r~~~~~rae~~~~ey~~~ 60 (244)
T 3iz5_e 34 AEKIKAAENTKVIYARAEQYAGEYEAQ 60 (244)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333456777888999999999988754
No 20
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=28.57 E-value=1.1e+02 Score=25.57 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCCCCcchhhHhHHHHHHhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhc------hhhhhhhhchh
Q 029231 71 PSDMVPEEGFALREWRRENAIRLEEK-EKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS------NREREKVSGDF 143 (197)
Q Consensus 71 P~eM~~EEG~~LREWRRQNAi~LEEK-Ek~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~------NREKEKly~~~ 143 (197)
+-+.++|---.-||=+++=...+.++ ++++.|.+.+-.++-++|-+.+=++-+.|..+|++. ||+....=--.
T Consensus 79 ~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~aEEeFLaqRddttiGyV~ 158 (190)
T 3lvg_D 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIXXXX 158 (190)
T ss_dssp TTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHHCCTTT
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccchhhhhc
Confidence 33455566667777777766666544 566778999999999999999999999999999975 56655443333
Q ss_pred hhH
Q 029231 144 KIL 146 (197)
Q Consensus 144 ~~~ 146 (197)
.|-
T Consensus 159 ~~~ 161 (190)
T 3lvg_D 159 XXX 161 (190)
T ss_dssp HHH
T ss_pred ccc
Confidence 443
No 21
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=28.38 E-value=61 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=28.4
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 84 EWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118 (197)
Q Consensus 84 EWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eF 118 (197)
.|-..|...+|++.+.+.+...+.+++|++.++..
T Consensus 37 ~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L 71 (146)
T 1nkw_F 37 SATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRL 71 (146)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888877777888889999888876
No 22
>4gdk_C APG16-like 1, autophagy-related protein 16-1; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_C
Probab=27.75 E-value=65 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.584 Sum_probs=24.4
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHHHH
Q 029231 84 EWRRENAIRLEEKEKKEKEMLNQIIE 109 (197)
Q Consensus 84 EWRRQNAi~LEEKEk~EKE~r~QII~ 109 (197)
.|||.=..+|.+..|.+++....||.
T Consensus 5 ~Wrr~I~~~Lr~RdR~q~~~F~diI~ 30 (36)
T 4gdk_C 5 RWKRHISEQLRRRDRLQRQAFEEIIL 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 49999999999999999999999985
No 23
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=27.05 E-value=2e+02 Score=21.47 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=6.5
Q ss_pred hhhchhhhHHHH
Q 029231 138 KVSGDFKILLVF 149 (197)
Q Consensus 138 Kly~~~~~~~~~ 149 (197)
.....+|+.+++
T Consensus 91 mwwkn~K~~iii 102 (119)
T 2kog_A 91 YWWKNLKMMIIL 102 (119)
T ss_dssp HSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445566655543
No 24
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=25.46 E-value=1.1e+02 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=26.9
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 85 WRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEF 118 (197)
Q Consensus 85 WRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eF 118 (197)
|-..|...+|++.+.+.+...+.+++|++.++..
T Consensus 39 AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L 72 (149)
T 1div_A 39 ATPANLKALEAQKQKEQRQAAEELANAKKLKEQL 72 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887777777888889999888776
No 25
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=24.97 E-value=1.1e+02 Score=22.97 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 87 RENAIRLEEKEKKEKEMLNQIIEEAEEYKLE 117 (197)
Q Consensus 87 RQNAi~LEEKEk~EKE~r~QII~EAeeyK~e 117 (197)
-+|-+.|.+|-|.|-|...+||.|-+--|+.
T Consensus 7 tknkelldkkirseie~ikkiiaefdvvke~ 37 (95)
T 1xou_B 7 TRNKELLDKKIRSEIEAIKKIIAEFDVVKES 37 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998877664
No 26
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=24.93 E-value=39 Score=21.16 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.4
Q ss_pred hHHHHHHhhHhhHH
Q 029231 82 LREWRRENAIRLEE 95 (197)
Q Consensus 82 LREWRRQNAi~LEE 95 (197)
-+.|+.+|+..+++
T Consensus 5 ~~~W~~EN~~ai~~ 18 (36)
T 3hpw_C 5 AERWKAENQEGMAE 18 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999988764
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=24.01 E-value=1.5e+02 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCC
Q 029231 63 SDGPILPPPSDM 74 (197)
Q Consensus 63 sdGPiLPpP~eM 74 (197)
+.+|..++|..-
T Consensus 201 ~~~p~~~~pgs~ 212 (261)
T 3sde_A 201 EQPPRFAQPGTF 212 (261)
T ss_dssp TSCSEECCTTSH
T ss_pred cCCCCCCCCCcc
Confidence 446777777643
No 28
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.64 E-value=2e+02 Score=23.42 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred hhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhch
Q 029231 79 GFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133 (197)
Q Consensus 79 G~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~n~EtnKa~N 133 (197)
..-|+||. ..+|.+|-++-++.+.++|+.|.+--.-|.+-....+.=-.+.+
T Consensus 66 aVSL~erQ---~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~s 117 (252)
T 3e98_A 66 AVSLVERQ---VRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATS 117 (252)
T ss_dssp -CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35699998 77889999999999999999999999999888877766555443
No 29
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=21.89 E-value=1.2e+02 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=16.2
Q ss_pred chhhHhHHHHHHhhHhhHHHHH
Q 029231 77 EEGFALREWRRENAIRLEEKEK 98 (197)
Q Consensus 77 EEG~~LREWRRQNAi~LEEKEk 98 (197)
+=-..||+||.++.+.+++|.+
T Consensus 147 ~l~~kL~~~r~~~~~~v~~~~~ 168 (183)
T 1o4v_A 147 EIARKVKEYKERMKREVLEKAQ 168 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888888887774
No 30
>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}
Probab=21.43 E-value=2.1e+02 Score=19.83 Aligned_cols=9 Identities=33% Similarity=0.900 Sum_probs=6.9
Q ss_pred hHhHHHHHH
Q 029231 80 FALREWRRE 88 (197)
Q Consensus 80 ~~LREWRRQ 88 (197)
..|+.||.-
T Consensus 4 e~L~rWR~a 12 (57)
T 4aqr_D 4 ERLQQWRKA 12 (57)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 479999954
No 31
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=21.15 E-value=22 Score=24.37 Aligned_cols=42 Identities=14% Similarity=0.047 Sum_probs=14.0
Q ss_pred CCCCCCCcchhhHhHHHHHH------hhHhhHHHHHHHHHHHHHHHHH
Q 029231 69 PPPSDMVPEEGFALREWRRE------NAIRLEEKEKKEKEMLNQIIEE 110 (197)
Q Consensus 69 PpP~eM~~EEG~~LREWRRQ------NAi~LEEKEk~EKE~r~QII~E 110 (197)
+.|.....++-..|..--.| |+..+++++++..++..++++-
T Consensus 132 ~~~~~f~~~d~~lL~~la~~~a~al~~a~~~~~~~~~~~~~~~~l~~~ 179 (181)
T 2qyb_A 132 TIVGLFNEPFLNLLESLAGQLAQAVKIVTEMEAKEREREEKERILLEN 179 (181)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666777777777665 4444445544444444444443
No 32
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=20.51 E-value=2e+02 Score=20.62 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 67 ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFY 119 (197)
Q Consensus 67 iLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFY 119 (197)
+.++|+.|..++ +.+|-++-...- + .......+|.+|+.|..+++-
T Consensus 14 ~~~~~~~m~l~e---lq~~i~~~~~~~--~--~~~~~~~kL~eE~gEl~e~i~ 59 (114)
T 2q5z_A 14 LVPRGSHMKLSE---LQSHIKEFDYAP--E--QSEHYFFKLIEEVGELSESIR 59 (114)
T ss_dssp ------CCBHHH---HHHHHHHHSCCG--G--GHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCHHH---HHHHHHHHhcCC--C--chHHHHHHHHHHHHHHHHHHH
Confidence 346677786544 444444333211 1 124578889999999998873
Done!