Query 029231
Match_columns 197
No_of_seqs 38 out of 40
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 15:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uala_ c.116.1.4 (A:) tRNA(m1 42.5 14 0.001 29.7 4.6 27 70-96 194-220 (252)
2 d1xoub_ a.231.1.2 (B:) EspA ch 25.8 51 0.0037 22.6 4.7 31 87-117 6-36 (84)
3 d1yu8x1 a.14.1.1 (X:42-76) Vil 24.9 9.5 0.00069 22.6 0.6 18 73-90 11-28 (35)
4 d1unda_ a.14.1.1 (A:) Advillin 24.7 11 0.00078 22.5 0.8 18 73-90 12-29 (36)
5 d1q79a2 d.218.1.3 (A:19-214) P 24.0 39 0.0028 25.3 4.1 56 63-121 4-60 (196)
6 d1bgva1 c.2.1.7 (A:195-449) Gl 23.8 26 0.0019 27.1 3.1 60 62-122 151-226 (255)
7 d1v2xa_ c.116.1.1 (A:) tRNA (G 22.9 18 0.0013 26.0 1.9 56 54-109 120-189 (191)
8 d1ml4a1 c.78.1.1 (A:2-151) Asp 20.5 11 0.00078 27.0 0.2 37 85-124 2-38 (150)
9 d2riga_ a.26.1.3 (A:) Interfer 19.3 34 0.0025 24.8 2.8 29 62-109 23-51 (119)
10 d1ydxa1 d.287.1.2 (A:1-193) Bi 18.8 27 0.0019 23.0 1.9 41 68-108 139-182 (193)
No 1
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=42.49 E-value=14 Score=29.67 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=17.8
Q ss_pred CCCCCCcchhhHhHHHHHHhhHhhHHH
Q 029231 70 PPSDMVPEEGFALREWRRENAIRLEEK 96 (197)
Q Consensus 70 pP~eM~~EEG~~LREWRRQNAi~LEEK 96 (197)
.|+-+-.-.--..++||+++++..-.+
T Consensus 194 VPeVLlSG~H~~I~~Wr~~~sl~~T~~ 220 (252)
T d1uala_ 194 VPPVLMSGHHEEIRKWRLKQSLQRTWL 220 (252)
T ss_dssp CCGGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhCCChHHHHHHHHHHHHHHHHH
Confidence 454444344567899999999865433
No 2
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=25.75 E-value=51 Score=22.60 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 87 RENAIRLEEKEKKEKEMLNQIIEEAEEYKLE 117 (197)
Q Consensus 87 RQNAi~LEEKEk~EKE~r~QII~EAeeyK~e 117 (197)
-+|-+.|.+|-|.|-|...+||.|-+--|+.
T Consensus 6 tknkelldkkirseie~ikkiiaefdvvken 36 (84)
T d1xoub_ 6 TRNKELLDKKIRSEIEAIKKIIAEFDVVKES 36 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998876654
No 3
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.93 E-value=9.5 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.9
Q ss_pred CCCcchhhHhHHHHHHhh
Q 029231 73 DMVPEEGFALREWRRENA 90 (197)
Q Consensus 73 eM~~EEG~~LREWRRQNA 90 (197)
.|..+|=..|-.|||+|.
T Consensus 11 gmsr~eF~~LP~WKq~~l 28 (35)
T d1yu8x1 11 GMTRSAFANLPLWKQQNL 28 (35)
T ss_dssp SSCHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHCcHhHHHHH
Confidence 377788889999999885
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.72 E-value=11 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.9
Q ss_pred CCCcchhhHhHHHHHHhh
Q 029231 73 DMVPEEGFALREWRRENA 90 (197)
Q Consensus 73 eM~~EEG~~LREWRRQNA 90 (197)
.|..+|=..|-.|+|+|.
T Consensus 12 gmsr~eF~~LP~WKq~~l 29 (36)
T d1unda_ 12 GITRGQFAALPGWKQLQM 29 (36)
T ss_dssp SSCHHHHHHSCHHHHHHH
T ss_pred CcCHHHHHHCcHHHHHHH
Confidence 367788889999999885
No 5
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.97 E-value=39 Score=25.26 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCCCCC-CCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029231 63 SDGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121 (197)
Q Consensus 63 sdGPiL-PpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeK 121 (197)
.-+||. ++|++-..+....|.+|=+.+..- + -.+|.++|.+++..-....++|..+
T Consensus 4 vT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~-p--s~ee~~~R~~vl~~L~~lv~~~~~~ 60 (196)
T d1q79a2 4 ITSPISLAAPKETDCLLTQKLVETLKPFGVF-E--EEEELQRRILILGKLNNLVKEWIRE 60 (196)
T ss_dssp SSCCSCCCCCCHHHHHHHHHHHHHHGGGTCS-C--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCChHHHHHHHHHHHHHHHcCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346776 677766666666777777664321 1 2235556666666666666666543
No 6
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=23.82 E-value=26 Score=27.09 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCCCCc-chhhHh---------------HHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029231 62 GSDGPILPPPSDMVP-EEGFAL---------------REWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122 (197)
Q Consensus 62 ~sdGPiLPpP~eM~~-EEG~~L---------------REWRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR 122 (197)
+-+||+.|.-.+... +-|... -||. ||...+.-.+++-.+++.+|+..+-+--.+..++.
T Consensus 151 gAN~p~t~ea~~~ll~~~gI~vvPD~laNaGGVivSy~E~~-qn~~~~~w~~~ev~~~l~~~m~~~~~~v~~~a~~~ 226 (255)
T d1bgva1 151 VANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMS-QNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERY 226 (255)
T ss_dssp CSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHH-HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcchHHHHHHHHhcCCEEehHhhhcCCceeeehhhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778999886433222 235432 3887 88888876666666677777766544334444433
No 7
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=22.91 E-value=18 Score=25.97 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=34.3
Q ss_pred cCCCCCCC-------CCCCCCC-CCCCCC-----CcchhhHhHHHHHHhhHh-hHHHHHHHHHHHHHHHH
Q 029231 54 VYGEYADG-------GSDGPIL-PPPSDM-----VPEEGFALREWRRENAIR-LEEKEKKEKEMLNQIIE 109 (197)
Q Consensus 54 ~f~p~~ng-------~sdGPiL-PpP~eM-----~~EEG~~LREWRRQNAi~-LEEKEk~EKE~r~QII~ 109 (197)
+||.|..| ..|..|- |-.... -.-=|..|=||+||.... +.+|.+-+.+-++.+++
T Consensus 120 V~G~E~~Gls~~~l~~~d~~v~IPm~~~~~SLNvsvAa~I~lyE~~rq~~~~g~~~~~~~~~~~~~~l~~ 189 (191)
T d1v2xa_ 120 LFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDPELYQKVLA 189 (191)
T ss_dssp EECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHHHHHHHHHHTGGGSCCSCHHHHHHHHH
T ss_pred EEccccccccHHHHHhCCcEEEeCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHh
Confidence 48999888 2333322 433333 236789999999876555 66666555555555554
No 8
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=20.51 E-value=11 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=26.2
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029231 85 WRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIV 124 (197)
Q Consensus 85 WRRQNAi~LEEKEk~EKE~r~QII~EAeeyK~eFYeKR~~ 124 (197)
|+++|.+.+.+=-+ +-..+|++.|+++|+........
T Consensus 2 f~~kh~l~~~dls~---~ei~~ll~~A~~lk~~~~~~~~~ 38 (150)
T d1ml4a1 2 WKGRDVISIRDFSK---EDIETVLATAERLERELKEKGQL 38 (150)
T ss_dssp CTTCCBCCGGGCCH---HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCcCCcchhhCCH---HHHHHHHHHHHHHHHhhcccccc
Confidence 66777766665443 34678999999999987655443
No 9
>d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.27 E-value=34 Score=24.85 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCCcchhhHhHHHHHHhhHhhHHHHHHHHHHHHHHHH
Q 029231 62 GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIE 109 (197)
Q Consensus 62 ~sdGPiLPpP~eM~~EEG~~LREWRRQNAi~LEEKEk~EKE~r~QII~ 109 (197)
++|||+.+ ..|+-|+ +|-+.|..++||+.
T Consensus 23 ~dggplFl----------~ilknw~---------EesekkIi~SQIvs 51 (119)
T d2riga_ 23 ANGGPLFL----------NILRNWK---------EESDNKIIQSQIVS 51 (119)
T ss_pred ccCCccHH----------HHHHhHH---------HhcchhhHHHHHHH
Confidence 47799886 4788997 34456788999985
No 10
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=18.78 E-value=27 Score=23.03 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=18.5
Q ss_pred CCCCCCCCcchhhHhHHHHHH---hhHhhHHHHHHHHHHHHHHH
Q 029231 68 LPPPSDMVPEEGFALREWRRE---NAIRLEEKEKKEKEMLNQII 108 (197)
Q Consensus 68 LPpP~eM~~EEG~~LREWRRQ---NAi~LEEKEk~EKE~r~QII 108 (197)
+|||.+-|..=+..|..+-++ +...++.-++.-+.++++++
T Consensus 139 lpP~~~eQ~~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~lf 182 (193)
T d1ydxa1 139 FTSNKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLF 182 (193)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555454445555555332 33333333333444444444
Done!