Query 029233
Match_columns 197
No_of_seqs 152 out of 339
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 99.6 7E-16 2.4E-20 118.5 4.6 76 75-156 38-113 (114)
2 2qtw_A Proprotein convertase s 99.2 2.1E-11 7.1E-16 95.3 5.7 75 75-155 48-122 (124)
3 3cnq_P Subtilisin BPN'; unclea 99.1 1.5E-10 5.1E-15 82.2 7.1 68 75-157 9-76 (80)
4 1v5i_B POIA1, IA-1=serine prot 98.5 4.9E-07 1.7E-11 64.3 7.4 69 75-155 3-74 (76)
5 2p4e_P Proprotein convertase s 97.9 7.2E-06 2.5E-10 79.7 5.5 76 76-157 77-152 (692)
6 3t41_A Epidermin leader peptid 96.3 0.0072 2.5E-07 54.3 6.9 74 65-157 35-109 (471)
7 3afg_A Subtilisin-like serine 96.2 0.0027 9.3E-08 59.2 3.7 43 115-158 61-114 (539)
8 3cnq_P Subtilisin BPN'; unclea 95.7 0.0086 2.9E-07 41.7 3.7 30 11-40 43-72 (80)
9 2z30_B TK-subtilisin; thermoco 95.6 0.01 3.5E-07 40.6 3.5 42 112-154 21-62 (65)
10 2z2z_A TK-subtilisin precursor 94.6 0.015 5.1E-07 51.5 2.6 42 115-157 25-66 (395)
11 2w2n_P Proprotein convertase s 94.6 0.02 6.9E-07 43.3 2.9 31 10-40 80-110 (114)
12 2z30_B TK-subtilisin; thermoco 93.7 0.063 2.2E-06 36.6 3.7 28 13-40 34-61 (65)
13 2qtw_A Proprotein convertase s 93.1 0.054 1.8E-06 41.8 2.9 31 10-40 90-120 (124)
14 1v5i_B POIA1, IA-1=serine prot 86.8 0.56 1.9E-05 32.6 3.4 31 10-40 40-72 (76)
15 3t41_A Epidermin leader peptid 77.2 2.6 9E-05 37.5 4.8 31 11-41 75-106 (471)
16 2z2z_A TK-subtilisin precursor 71.6 2.5 8.6E-05 37.1 3.2 32 10-41 32-63 (395)
17 2p4e_P Proprotein convertase s 58.7 5.2 0.00018 38.9 2.9 31 11-41 119-149 (692)
18 3afg_A Subtilisin-like serine 48.2 12 0.00039 34.8 3.3 32 10-41 68-110 (539)
19 3ftj_A MACB, macrolide export 31.4 22 0.00076 27.5 2.0 24 129-152 33-56 (226)
20 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.2 24 0.00083 25.2 2.1 62 124-196 12-74 (140)
21 2i2y_A Fusion protein consists 26.9 1E+02 0.0036 22.4 5.0 66 122-196 10-84 (150)
22 2h9z_A Hypothetical protein HP 23.1 48 0.0016 23.5 2.4 30 7-36 50-86 (86)
23 2jsx_A Protein NAPD; TAT, proo 21.3 83 0.0029 22.7 3.4 16 23-38 60-75 (95)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.59 E-value=7e-16 Score=118.49 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=64.7
Q ss_pred eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF 154 (197)
Q Consensus 75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~ 154 (197)
+.|||+|+.... + ..++.|++||++++++ +.+...|.|+|++.|+||+|+||++|+++|+++|+|++|+||+.+
T Consensus 38 ~~YIV~lk~~~~----~-~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v 111 (114)
T 2w2n_P 38 GTYVVVLKEETH----L-SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 111 (114)
T ss_dssp EEEEEEECTTCC----H-HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CcEEEEECCCCC----H-HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence 589999986442 2 2567999999999865 335668999999999999999999999999999999999999876
Q ss_pred CC
Q 029233 155 GS 156 (197)
Q Consensus 155 ~~ 156 (197)
+.
T Consensus 112 ~~ 113 (114)
T 2w2n_P 112 FA 113 (114)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 2
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=99.18 E-value=2.1e-11 Score=95.30 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=58.5
Q ss_pred eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF 154 (197)
Q Consensus 75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~ 154 (197)
..|||.|.+.... ..++.|.+++.+++.. ......|.|+|++.|+||+|+|+++++++|+++|+|.+|.||..+
T Consensus 48 ~~YIV~~K~~~~~-----~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v 121 (124)
T 2qtw_A 48 GTYVVVLKEETHL-----SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 121 (124)
T ss_dssp EEEEEEECTTCCH-----HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CCEEEEECCCCCH-----HHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence 4799999865432 2456777777765311 001237999999999999999999999999999999999999876
Q ss_pred C
Q 029233 155 G 155 (197)
Q Consensus 155 ~ 155 (197)
+
T Consensus 122 ~ 122 (124)
T 2qtw_A 122 F 122 (124)
T ss_dssp E
T ss_pred e
Confidence 5
No 3
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=99.11 E-value=1.5e-10 Score=82.18 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=51.9
Q ss_pred eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF 154 (197)
Q Consensus 75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~ 154 (197)
+.|||.|....... . .|.+++ .-. ..+|.|+|.+ |+||+|+|+++++++|+++|+|.+|.||..+
T Consensus 9 ~~YIV~~k~~~~~~----~---~~~~~~-~~~------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v 73 (80)
T 3cnq_P 9 KKYIVGFKQGFKSC----A---KKEDVI-SEK------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLY 73 (80)
T ss_dssp CEEEEEECTTCCSH----H---HHHHHH-HTT------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEE
T ss_pred CCEEEEECCCCChH----H---HHHHHH-HHc------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEE
Confidence 58999998654322 1 122222 222 2479999998 9999999999999999999999999999887
Q ss_pred CCC
Q 029233 155 GSE 157 (197)
Q Consensus 155 ~~~ 157 (197)
++.
T Consensus 74 ~~~ 76 (80)
T 3cnq_P 74 RAL 76 (80)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 4
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.46 E-value=4.9e-07 Score=64.30 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=55.4
Q ss_pred eeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEe-ecceeeEEeEeCHHHHHHhcCC--CCeEEEcCC
Q 029233 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS-WQSNFGFCCELDDECAQELTGV--PGVLSVQPD 151 (197)
Q Consensus 75 ~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysY-t~~f~GFAA~LTeeeA~kLs~l--PGVVSVfPD 151 (197)
..|||.|.... +...++.|.+|+...=| .|-|.| ...++||+|.|++++++.|+.. |.|-.|=+|
T Consensus 3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~gg-------~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDV-----SEDKIRETKDEVIAEGG-------TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTC-----CHHHHHHHHHHHHHHTC-------CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCC-----CHHHHHHHHHHHHhhCC-------ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 57999996432 22367788888776532 478888 4889999999999999999999 889999999
Q ss_pred CCcC
Q 029233 152 ENFG 155 (197)
Q Consensus 152 ~~~~ 155 (197)
...+
T Consensus 71 ~~v~ 74 (76)
T 1v5i_B 71 HVAH 74 (76)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 8764
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=97.94 E-value=7.2e-06 Score=79.66 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=56.7
Q ss_pred eEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCcC
Q 029233 76 HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFG 155 (197)
Q Consensus 76 ~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~~ 155 (197)
.|||.|.+.... + ..+.|+++|.+.+... ....+|.|+|.+.|+||+++|+++++++|+++|+|.+|.||..+.
T Consensus 77 ~YIV~lk~~~~~----~-~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~ 150 (692)
T 2p4e_P 77 TYVVVLKEETHL----S-QSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 150 (692)
T ss_dssp EEEEEECTTCCH----H-HHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred cEEEEECCCCCH----H-HHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccc
Confidence 899999864432 2 3455666665543110 012368999999999999999999999999999999999998765
Q ss_pred CC
Q 029233 156 SE 157 (197)
Q Consensus 156 ~~ 157 (197)
.+
T Consensus 151 ~~ 152 (692)
T 2p4e_P 151 AQ 152 (692)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=96.30 E-value=0.0072 Score=54.28 Aligned_cols=74 Identities=7% Similarity=0.037 Sum_probs=47.9
Q ss_pred ccccccCCCceeEEEEecCCCCCCcchhhHHHHHHHHHHHHhCCchhcccceEEEeecceeeEEeEeCHHHHHHhcC-CC
Q 029233 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VP 143 (197)
Q Consensus 65 ~~~l~~~~d~~~YIV~M~~p~~~~~~~~~~~~sH~q~LasVLgS~e~Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~-lP 143 (197)
+.+.+.+.+.+.|||.+.... .-.+++. +..-+++|.| ..++||+++|+++++++|++ +|
T Consensus 35 ~~l~~~~~~~~~yiv~~~~~~-----------~~~~~~~-------~~g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p 95 (471)
T 3t41_A 35 ENLYFQGSEELYYSVEYKNTA-----------TFNKLVK-------KKSLNVVYNI-PELHVAQIKMTKMHANALANYKN 95 (471)
T ss_dssp --------CCEEEEEEESCHH-----------HHHHHHH-------HHTCEEEEEE-GGGTEEEEEECHHHHHHHHTCTT
T ss_pred ccceecCCCceEEEEEcCCHH-----------HHHHHHH-------hCCCEEEEec-CCccEEEEEeCHHHHHHHHhcCC
Confidence 555677778888999554311 1112221 1223567777 45999999999999999999 99
Q ss_pred CeEEEcCCCCcCCC
Q 029233 144 GVLSVQPDENFGSE 157 (197)
Q Consensus 144 GVVSVfPD~~~~~~ 157 (197)
+|.+|.|+..+...
T Consensus 96 ~V~~v~~~~~~~~~ 109 (471)
T 3t41_A 96 DIKYINATCSTCIT 109 (471)
T ss_dssp TEEEEEECCSSCBC
T ss_pred CCcEEEecceeccc
Confidence 99999999877664
No 7
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=96.22 E-value=0.0027 Score=59.22 Aligned_cols=43 Identities=12% Similarity=-0.061 Sum_probs=38.0
Q ss_pred ceEEEeecceeeEEeEeCHHHHHHh-----------cCCCCeEEEcCCCCcCCCC
Q 029233 115 CIYHVSWQSNFGFCCELDDECAQEL-----------TGVPGVLSVQPDENFGSEN 158 (197)
Q Consensus 115 sI~ysYt~~f~GFAA~LTeeeA~kL-----------s~lPGVVSVfPD~~~~~~~ 158 (197)
++.|.|. .++||+++|+++|+++| +++|+|.+|.||..++...
T Consensus 61 ~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~ 114 (539)
T 3afg_A 61 KIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV 114 (539)
T ss_dssp EEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred eEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence 5788885 69999999999999999 8999999999998887643
No 8
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=95.73 E-value=0.0086 Score=41.74 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=27.8
Q ss_pred eeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233 11 HFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (197)
Q Consensus 11 ~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~ 40 (197)
--||.+.++|+..++|+++|+|..|-||.-
T Consensus 43 ~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 43 VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 458999999999999999999999999964
No 9
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=95.56 E-value=0.01 Score=40.65 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=37.0
Q ss_pred cccceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCc
Q 029233 112 AQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENF 154 (197)
Q Consensus 112 Ak~sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~ 154 (197)
.--+|+|.+. .+++++|.|+++.+++|++.|||..|-+|...
T Consensus 21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v 62 (65)
T 2z30_B 21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA 62 (65)
T ss_dssp GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence 4457899874 69999999999999999999999999999765
No 10
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=94.59 E-value=0.015 Score=51.52 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=37.8
Q ss_pred ceEEEeecceeeEEeEeCHHHHHHhcCCCCeEEEcCCCCcCCC
Q 029233 115 CIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSE 157 (197)
Q Consensus 115 sI~ysYt~~f~GFAA~LTeeeA~kLs~lPGVVSVfPD~~~~~~ 157 (197)
++++.|. .++||+++|+++++++|+++|+|.+|.||..+++.
T Consensus 25 ~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 66 (395)
T 2z2z_A 25 HIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66 (395)
T ss_dssp EEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred EEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence 5788886 49999999999999999999999999999888654
No 11
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=94.57 E-value=0.02 Score=43.26 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.9
Q ss_pred ceeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233 10 THFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (197)
Q Consensus 10 ~~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~ 40 (197)
.--||.+.++|+..++|+++|+|.+|-||.-
T Consensus 80 ~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 80 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp SSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred cceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 3459999999999999999999999999853
No 12
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=93.67 E-value=0.063 Score=36.63 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=26.1
Q ss_pred eeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233 13 GFCCNVDEETSRELARLPGVLTVRPDPD 40 (197)
Q Consensus 13 ~f~c~i~ee~s~~l~~lpgv~~v~pd~~ 40 (197)
++.+++++++.++|+++|||..|-+|..
T Consensus 34 a~~~~lp~~~~~~L~~~p~V~yVE~D~~ 61 (65)
T 2z30_B 34 AVVVDVPANAVGKLKKMPGVEKVEFDHQ 61 (65)
T ss_dssp EEEEEECGGGHHHHHTSTTEEEEEECCE
T ss_pred EEEEEeCHHHHHHHhcCCCceEEecCcE
Confidence 7899999999999999999999999963
No 13
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=93.08 E-value=0.054 Score=41.75 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.9
Q ss_pred ceeeeEeeeChHhHHHhhcCCCeEEEccCCC
Q 029233 10 THFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (197)
Q Consensus 10 ~~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~ 40 (197)
.--||.+.++|+..++|+++|+|.+|-||.-
T Consensus 90 ~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 90 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp SSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred cceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 3459999999999999999999999999853
No 14
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=86.82 E-value=0.56 Score=32.60 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=27.5
Q ss_pred ceeeeEeeeChHhHHHhhcC--CCeEEEccCCC
Q 029233 10 THFGFCCNVDEETSRELARL--PGVLTVRPDPD 40 (197)
Q Consensus 10 ~~~~f~c~i~ee~s~~l~~l--pgv~~v~pd~~ 40 (197)
.-=||.+.++|++.++|+.. |.|.+|-+|.-
T Consensus 40 ~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 40 GMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp TEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred ceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 34699999999999999999 77999999964
No 15
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=77.24 E-value=2.6 Score=37.54 Aligned_cols=31 Identities=6% Similarity=-0.065 Sum_probs=28.3
Q ss_pred eeeeEeeeChHhHHHhhc-CCCeEEEccCCCC
Q 029233 11 HFGFCCNVDEETSRELAR-LPGVLTVRPDPDY 41 (197)
Q Consensus 11 ~~~f~c~i~ee~s~~l~~-lpgv~~v~pd~~~ 41 (197)
.-+|.++++++..++|++ +|+|.+|.||..+
T Consensus 75 ~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~ 106 (471)
T 3t41_A 75 LHVAQIKMTKMHANALANYKNDIKYINATCST 106 (471)
T ss_dssp GTEEEEEECHHHHHHHHTCTTTEEEEEECCSS
T ss_pred ccEEEEEeCHHHHHHHHhcCCCCcEEEeccee
Confidence 568999999999999999 9999999999654
No 16
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=71.55 E-value=2.5 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=28.4
Q ss_pred ceeeeEeeeChHhHHHhhcCCCeEEEccCCCC
Q 029233 10 THFGFCCNVDEETSRELARLPGVLTVRPDPDY 41 (197)
Q Consensus 10 ~~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~~ 41 (197)
..-+|..+++++..++|+.+|+|.+|.||.-+
T Consensus 32 ~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~ 63 (395)
T 2z2z_A 32 LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA 63 (395)
T ss_dssp SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEE
T ss_pred cCCEEEEEECHHHHHHHHcCCCceEEEEeeee
Confidence 34589999999999999999999999999654
No 17
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=58.66 E-value=5.2 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=28.1
Q ss_pred eeeeEeeeChHhHHHhhcCCCeEEEccCCCC
Q 029233 11 HFGFCCNVDEETSRELARLPGVLTVRPDPDY 41 (197)
Q Consensus 11 ~~~f~c~i~ee~s~~l~~lpgv~~v~pd~~~ 41 (197)
.-||..+++++..++|+++|+|.+|.||..+
T Consensus 119 ~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v 149 (692)
T 2p4e_P 119 LPGFLVKMSGDLLELALKLPHVDYIEEDSSV 149 (692)
T ss_dssp SCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred ccEEEEEeCHHHHHHHHcCCCceEEEecccc
Confidence 4589999999999999999999999999754
No 18
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=48.17 E-value=12 Score=34.75 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=27.9
Q ss_pred ceeeeEeeeChHhHHHh-----------hcCCCeEEEccCCCC
Q 029233 10 THFGFCCNVDEETSREL-----------ARLPGVLTVRPDPDY 41 (197)
Q Consensus 10 ~~~~f~c~i~ee~s~~l-----------~~lpgv~~v~pd~~~ 41 (197)
..-||..+++++..++| +++|+|.+|.||.-.
T Consensus 68 ~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~ 110 (539)
T 3afg_A 68 IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVV 110 (539)
T ss_dssp SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEE
T ss_pred eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccc
Confidence 34589999999999999 899999999999654
No 19
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=31.44 E-value=22 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.5
Q ss_pred eEeCHHHHHHhcCCCCeEEEcCCC
Q 029233 129 CELDDECAQELTGVPGVLSVQPDE 152 (197)
Q Consensus 129 A~LTeeeA~kLs~lPGVVSVfPD~ 152 (197)
..||++++++|+++|||..|-|-.
T Consensus 33 ~~lt~~d~~~l~~~p~V~~v~~~~ 56 (226)
T 3ftj_A 33 QNLKISDANTLSKQSYIQSVTPNT 56 (226)
T ss_dssp CCCBHHHHHHHHTSTTEEEEEEEE
T ss_pred CCCCHHHHHHHhcCCCceEEEEEE
Confidence 569999999999999999998853
No 20
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.18 E-value=24 Score=25.22 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=33.8
Q ss_pred eeeEEeEeCHHHHHHhcCCC-CeEEEcCCCCcCCCCcCCCCCcccCCCCCCCCCCCCccccccceeeecccccc
Q 029233 124 NFGFCCELDDECAQELTGVP-GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGIQWT 196 (197)
Q Consensus 124 f~GFAA~LTeeeA~kLs~lP-GVVSVfPD~~~~~~~k~ygg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (197)
+++-+-.|+++..+.|+++| .+..+-|.-.-... . |.-. .+......+..+++|||.||.+-
T Consensus 12 ~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~----~------~~~~-~~~~~~~~~~~~~~l~v~nlp~~ 74 (140)
T 2ku7_A 12 VHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV----D------GGSG-GSGGSGGSATTKRVLYVGGLAEE 74 (140)
T ss_dssp HHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC----C------CCSC-SSCSSCSSCSSCCEEEEECCCTT
T ss_pred cCCcccccCHHHHHHHhhccccceeeCcccccccc----C------CCCC-CCCCCCCCCCCCcEEEEEeCCCC
Confidence 44446679999999999987 33333332111111 1 1100 11112334556889999999864
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=26.94 E-value=1e+02 Score=22.38 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=35.7
Q ss_pred cceeeEEe--EeCHHHHHHh-------cCCCCeEEEcCCCCcCCCCcCCCCCcccCCCCCCCCCCCCccccccceeeecc
Q 029233 122 QSNFGFCC--ELDDECAQEL-------TGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTG 192 (197)
Q Consensus 122 ~~f~GFAA--~LTeeeA~kL-------s~lPGVVSVfPD~~~~~~~k~ygg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (197)
..+.||+. ..++++|++- ..+.|-+.+-.......... .................++|||.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~V~n 80 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE---------GSHHHHHHMHRDSCPLDCKVYVGN 80 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEEC---------SSSSCCCCSCSSSSTTSCEEEEES
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCcccccc---------ccccccccccccCCCCCCEEEEeC
Confidence 34678888 8888888643 34667444443322110000 000111112244466788999999
Q ss_pred cccc
Q 029233 193 IQWT 196 (197)
Q Consensus 193 ~~~~ 196 (197)
|++.
T Consensus 81 l~~~ 84 (150)
T 2i2y_A 81 LGNN 84 (150)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9874
No 22
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=23.10 E-value=48 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=23.1
Q ss_pred ccCceeeeEeeeC-------hHhHHHhhcCCCeEEEc
Q 029233 7 SCDTHFGFCCNVD-------EETSRELARLPGVLTVR 36 (197)
Q Consensus 7 s~~~~~~f~c~i~-------ee~s~~l~~lpgv~~v~ 36 (197)
|.-.|..+.|.|. +++=++|++.|||.+||
T Consensus 50 s~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~vL 86 (86)
T 2h9z_A 50 KNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQTL 86 (86)
T ss_dssp CCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEEC
T ss_pred CCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEeC
Confidence 3456777777775 45668899999999996
No 23
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=21.29 E-value=83 Score=22.74 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHhhcCCCeEEEccC
Q 029233 23 SRELARLPGVLTVRPD 38 (197)
Q Consensus 23 s~~l~~lpgv~~v~pd 38 (197)
-++|..||||+.+-+-
T Consensus 60 i~~I~~i~GVlst~lv 75 (95)
T 2jsx_A 60 IESVRNVEGVLAVSLV 75 (95)
T ss_dssp HHHHTTSTTEEEEEES
T ss_pred HHHHhcCCCccEEeEE
Confidence 4789999999999887
Done!