BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029234
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1SFK7|EX7L_NOCSJ Exodeoxyribonuclease 7 large subunit OS=Nocardioides sp. (strain
           BAA-499 / JS614) GN=xseA PE=3 SV=1
          Length = 411

 Score = 33.9 bits (76), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 113 PKTPGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMMMRHPRPAGTIIQ 161
           P T G+ T+ N  ++R +  +++  WP   F      M+ PR A  +I+
Sbjct: 142 PGTVGLVTAPNSAAERDVLENARRRWPAVAFEIAYAAMQGPRSASEVIE 190


>sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2
           SV=1
          Length = 465

 Score = 32.0 bits (71), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 36  PRIRQFVHRRLRAVFDVALKFHKNIQERDIEVGRNVGNWILRWLDRMKPS 85
           PR+R  ++ ++    D  ++  + IQ   +E GRN+ N + ++   +KPS
Sbjct: 143 PRVRDLMNMKIFVDTDADVRLSRRIQRDTVERGRNIQNVLEQYTKFVKPS 192


>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus GN=Cux2 PE=2 SV=2
          Length = 1426

 Score = 30.4 bits (67), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 71   VGNWILRWLDRMKPSAQIRG----PPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKES 126
            V NW   +  RM+    + G    P   P  GP++    H  + P P++P  +T   K  
Sbjct: 1157 VINWFHNYRSRMRREMLVEGTQDDPDFDPSGGPNVLTPGHTHREPTPQSPDSETEDQKPP 1216

Query: 127  DRHL 130
             + L
Sbjct: 1217 MKSL 1220


>sp|Q6W2J9|BCOR_HUMAN BCL-6 corepressor OS=Homo sapiens GN=BCOR PE=1 SV=1
          Length = 1755

 Score = 30.4 bits (67), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 90  GPPERPPHGPSMSMTNHGMKSPNPKTPGVQTSRNKESDRHLFSSSKNIWPKPPFSTIAMM 149
           G P   P   S S ++ G K+ NP+ P  + + N      +F S    +  PP       
Sbjct: 599 GQPPATPAKHSSSTSSKGAKASNPE-PSFKANENGLPPSSIFLSPNEAFRSPPIPYPRSY 657

Query: 150 MRHPRPAGTIIQYRHLQTNG 169
           + +P P G  +    L   G
Sbjct: 658 LPYPAPEGIAVSPLSLHGKG 677


>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus GN=PCLO PE=2 SV=1
          Length = 5120

 Score = 30.0 bits (66), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 82  MKPSAQIRGPPERPP--HGPSMSMTNHGMKSPNP---KTPGVQTSRNKE 125
           +KPSAQ  GPP++ P    P+   T    + P P   KTP  QT   K+
Sbjct: 259 VKPSAQQAGPPKQQPGSEKPTAQQTGPAKQPPQPGPGKTPLQQTGPVKQ 307


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,068,600
Number of Sequences: 539616
Number of extensions: 3317251
Number of successful extensions: 7498
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7490
Number of HSP's gapped (non-prelim): 31
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)