Query 029234
Match_columns 197
No_of_seqs 23 out of 25
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 15:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h7y_A Dual specificity protei 33.7 12 0.00042 30.4 0.9 17 44-60 77-93 (161)
2 3n71_A Histone lysine methyltr 30.9 72 0.0025 28.0 5.4 25 18-42 414-438 (490)
3 2v7k_A PRNB; IDO, TDO, biosynt 29.9 52 0.0018 28.9 4.2 34 34-67 270-316 (361)
4 2ckc_A Chromodomain-helicase-D 26.0 31 0.0011 25.6 1.8 16 182-197 41-56 (80)
5 2q1z_A RPOE, ECF SIGE; ECF sig 18.9 67 0.0023 22.7 2.4 46 33-79 35-87 (184)
6 1kdl_A YOPD protein; yersinia, 16.9 64 0.0022 19.6 1.5 11 186-196 3-13 (26)
7 3qww_A SET and MYND domain-con 15.8 72 0.0025 27.5 2.2 24 18-41 319-342 (433)
8 1h3l_A RNA polymerase sigma fa 15.6 1E+02 0.0035 19.6 2.4 45 31-77 18-69 (87)
9 1zu2_A Mitochondrial import re 15.0 2.6E+02 0.009 21.4 5.0 35 19-63 113-147 (158)
10 1rp3_A RNA polymerase sigma fa 14.7 2.3E+02 0.0077 20.5 4.4 29 51-79 48-76 (239)
No 1
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=33.65 E-value=12 Score=30.40 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.9
Q ss_pred HHhhHhhHHHHhhhhhh
Q 029234 44 RRLRAVFDVALKFHKNI 60 (197)
Q Consensus 44 rRtr~vFdva~~vhkni 60 (197)
-|+|++|+.|+++||++
T Consensus 77 d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 77 DDARDYFQMARANCKKF 93 (161)
T ss_dssp GGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 48899999999999874
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=30.95 E-value=72 Score=28.00 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhccCCCChhHHHHH
Q 029234 18 RTYRLALRIKRRVISPKRPRIRQFV 42 (197)
Q Consensus 18 RtYrlalr~qrrlisp~~p~~r~F~ 42 (197)
..|+-||.|..+.++|+||.+.+-.
T Consensus 414 ~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 414 GMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4688999999999999999987643
No 3
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=29.88 E-value=52 Score=28.91 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=27.5
Q ss_pred CChhHHHHHH-------------HHhhHhhHHHHhhhhhhhhhhhhh
Q 029234 34 KRPRIRQFVH-------------RRLRAVFDVALKFHKNIQERDIEV 67 (197)
Q Consensus 34 ~~p~~r~F~~-------------rRtr~vFdva~~vhkniq~rDiev 67 (197)
++|.||+||. .+.+..||-+|..++.+.++-+.+
T Consensus 270 ~~~sir~~v~~~~~~~~~~~~~~~~l~~ay~~~v~~l~~fR~~H~~i 316 (361)
T 2v7k_A 270 GEPALIDRALDEARAVGTRDEHVRAGLTALERVFKVLLRFRAPHLKL 316 (361)
T ss_dssp TSCCHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999987 467899999999999888877754
No 4
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=26.04 E-value=31 Score=25.59 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHhhC
Q 029234 182 FDGVLRKDIMQWLLQK 197 (197)
Q Consensus 182 ~~GViRKDI~Qwm~Q~ 197 (197)
-+..-+||.++|+.|+
T Consensus 41 e~AP~~KdL~dWLrqh 56 (80)
T 2ckc_A 41 EDAPKNKDLVEWLKLH 56 (80)
T ss_dssp TSSCBHHHHHHHHHHC
T ss_pred ccCccccCHHHHHHHC
Confidence 5566799999999886
No 5
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=18.89 E-value=67 Score=22.67 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHhhH-------hhHHHHhhhhhhhhhhhhhhhhhhhHHHHhh
Q 029234 33 PKRPRIRQFVHRRLRA-------VFDVALKFHKNIQERDIEVGRNVGNWILRWL 79 (197)
Q Consensus 33 p~~p~~r~F~~rRtr~-------vFdva~~vhkniq~rDievGrnlGN~iLr~L 79 (197)
..+|.+..|+.+++.. +=|+.+++.+++..=|-+-| ++..|+.+.+
T Consensus 35 ~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~ 87 (184)
T 2q1z_A 35 HFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIA 87 (184)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHH
Confidence 3456666666666543 34677888888876555444 8888888654
No 6
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=16.86 E-value=64 Score=19.60 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=9.2
Q ss_pred hHHHHHHHHhh
Q 029234 186 LRKDIMQWLLQ 196 (197)
Q Consensus 186 iRKDI~Qwm~Q 196 (197)
|=||.+|+|.|
T Consensus 3 fMkDvlql~qQ 13 (26)
T 1kdl_A 3 FMKDVLRLIEQ 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56999999876
No 7
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=15.75 E-value=72 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.4
Q ss_pred hHHHHHHHhhhhccCCCChhHHHH
Q 029234 18 RTYRLALRIKRRVISPKRPRIRQF 41 (197)
Q Consensus 18 RtYrlalr~qrrlisp~~p~~r~F 41 (197)
--|+.||.|+.++++|+||.+-.-
T Consensus 319 ~~~~~~L~i~~~~lg~~Hp~~a~~ 342 (433)
T 3qww_A 319 EICELSQEKMSSVFEDSNVYMLHM 342 (433)
T ss_dssp HHHHHHHHHHTTTBCTTSHHHHHH
T ss_pred HHHHHHHHHhhCccChhchHHHHH
Confidence 358899999999999999987543
No 8
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=15.61 E-value=1e+02 Score=19.55 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred cCCCChhHHHHHHHHhhH-------hhHHHHhhhhhhhhhhhhhhhhhhhHHHH
Q 029234 31 ISPKRPRIRQFVHRRLRA-------VFDVALKFHKNIQERDIEVGRNVGNWILR 77 (197)
Q Consensus 31 isp~~p~~r~F~~rRtr~-------vFdva~~vhkniq~rDievGrnlGN~iLr 77 (197)
+..-+|.+..|+.+.+.. +=||.|++.+++.+=| -..++..|+.+
T Consensus 18 ~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~--~~~~~~~wl~~ 69 (87)
T 1h3l_A 18 ALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFR--EGTNLKAWLYR 69 (87)
T ss_dssp HHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCC--SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcC--CCccHHHHHHH
Confidence 334567777777777653 4578888888876533 23577777664
No 9
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=14.95 E-value=2.6e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhccCCCChhHHHHHHHHhhHhhHHHHhhhhhhhhh
Q 029234 19 TYRLALRIKRRVISPKRPRIRQFVHRRLRAVFDVALKFHKNIQER 63 (197)
Q Consensus 19 tYrlalr~qrrlisp~~p~~r~F~~rRtr~vFdva~~vhkniq~r 63 (197)
.|+-|+.+ -|+++ .+++.-.+.+-|..+|-+|+..
T Consensus 113 ~~~kAl~l-----~P~~~-----~y~~al~~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 113 FFQQAVDE-----QPDNT-----HYLKSLEMTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHH-----CTTCH-----HHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHh-----CCCCH-----HHHHHHHHHHhCHhccCccccc
Confidence 45556655 47765 6677777888888888877654
No 10
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=14.73 E-value=2.3e+02 Score=20.47 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhHHHHhh
Q 029234 51 DVALKFHKNIQERDIEVGRNVGNWILRWL 79 (197)
Q Consensus 51 dva~~vhkniq~rDievGrnlGN~iLr~L 79 (197)
|+.+++.+++..=|-+-|.++..|+.+|+
T Consensus 48 e~~l~l~~~~~~~~~~~~~~f~~~l~~~~ 76 (239)
T 1rp3_A 48 YGVIGLIKAVDNLSTENPKRAEAYIKLRI 76 (239)
T ss_dssp HHHHHHHHHHHTCCCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHH
Confidence 67888999998888777778887776554
Done!