BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029236
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZPS|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
Phosphoribosyl-Amp Cyclohydrolase Hisi
pdb|1ZPS|B Chain B, Crystal Structure Of Methanobacterium Thermoautotrophicum
Phosphoribosyl-Amp Cyclohydrolase Hisi
Length = 138
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 64 LAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDI 123
L +A+AQ+ +TG +LM + NR+AL T+ + A ++S SR LW KGE+S + V+D+
Sbjct: 23 LIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDV 82
Query: 124 FLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
+DCD D+++ + +G CHTG +C+Y S+
Sbjct: 83 LVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 96 KATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT-- 153
+A ++R+ + + G T +N+I +QD+ C + +P P H+ +E ++T
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTV---QPIRPKSHSKAEAVFFTTP 498
Query: 154 --SVLDALKDQPVGSFISLAH 172
S L +P+G H
Sbjct: 499 PCSALKGKSHKPIGCLGEAGH 519
>pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
pdb|1XPI|B Chain B, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
Length = 231
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 122 DIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKD-QPVGSFISLAH 172
D+ L D D I+ L KP G H GS + V++ L+ +P F+ L H
Sbjct: 5 DVILYED-DHILVLNKPSGTAVHGGSGLSF--GVIEGLRALRPEARFLELVH 53
>pdb|1V9K|A Chain A, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
pdb|1V9K|B Chain B, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
Length = 228
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 130 DSIIYLGKPDGPTCHTGSETCYYTSVLDALKD-QPVGSFISLAH 172
D I+ L KP G H GS + V++ L+ +P F+ L H
Sbjct: 9 DHILVLNKPSGTAVHGGSGLSF--GVIEGLRALRPEARFLELVH 50
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 128 DRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFIS 169
D++ I+ G +C+ S+ C+YT D + P GSFIS
Sbjct: 591 DKNGNIWASTNTGISCYITSKKCFYT--YDHSNNIPQGSFIS 630
>pdb|2QIP|A Chain A, Crystal Structure Of A Protein Of Unknown Function Vpa0982
From Vibrio Parahaemolyticus Rimd 2210633
Length = 165
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 65 AVAIAQNVDTGAILMQGFANRDALATTISSR---KATFYSRSRSTLWTKGETSQNFINVQ 121
A+ IA +VD IL+ G + L I R K T Y R T T + + NF+ +
Sbjct: 102 AIEIAPDVDR-VILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAID 160
Query: 122 DIFL 125
D FL
Sbjct: 161 DDFL 164
>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|B Chain B, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|C Chain C, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|D Chain D, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
Length = 489
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 149 TCYYTSVLDALKDQPVGSFISLAHTAVLFGIPESELDS 186
T +YT ++A+KD P G+ + L L GIPE+ +D+
Sbjct: 2 TKFYTDPVEAVKDIPDGATV-LVGGFGLCGIPENLIDA 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,378,077
Number of Sequences: 62578
Number of extensions: 201237
Number of successful extensions: 408
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 8
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)