Query 029236
Match_columns 196
No_of_seqs 144 out of 1040
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zps_A PRA-CH, phosphoribosyl- 100.0 5.5E-57 1.9E-61 363.4 13.7 104 53-156 12-115 (138)
2 1b75_A Protein (50S ribosomal 24.2 38 0.0013 24.3 2.1 31 61-94 22-53 (94)
3 3un7_A PBPA, penicillin-bindin 21.7 70 0.0024 28.5 3.6 16 66-81 132-147 (462)
4 1ttz_A Conserved hypothetical 21.2 54 0.0018 22.7 2.3 27 65-94 48-74 (87)
5 1ynx_A Replication factor-A pr 19.4 1.3E+02 0.0043 21.8 4.0 40 64-104 41-81 (114)
6 2jk9_A SPRY domain-containing 18.1 1.5E+02 0.005 23.4 4.5 41 97-137 118-172 (212)
7 1nho_A Probable thioredoxin; b 17.1 69 0.0024 19.9 1.9 32 59-94 51-82 (85)
8 2v2f_F Penicillin binding prot 16.6 1.4E+02 0.0048 25.8 4.3 17 65-81 66-82 (390)
9 2op6_A Heat shock 70 kDa prote 16.6 2.1E+02 0.0072 21.4 4.9 39 56-94 86-130 (152)
10 1feu_A 50S ribosomal protein L 15.2 1.5E+02 0.0051 24.3 3.9 62 61-132 20-83 (206)
No 1
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=100.00 E-value=5.5e-57 Score=363.37 Aligned_cols=104 Identities=37% Similarity=0.710 Sum_probs=100.7
Q ss_pred HhhccccCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcCeEEEEeCCCCcceecCCCCCCeEEEEEeeecCCCCeE
Q 029236 53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSI 132 (196)
Q Consensus 53 ~l~~i~~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG~~~yySRSR~~lW~KGetSGn~Q~V~~I~~DCD~DaL 132 (196)
+...++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+|+|
T Consensus 12 ~~~~~~~~~~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~L 91 (138)
T 1zps_A 12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAV 91 (138)
T ss_dssp SCCCCCSSSCCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEE
T ss_pred hhcccccCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCccCCCCcccccccc
Q 029236 133 IYLGKPDGPTCHTGSETCYYTSVL 156 (196)
Q Consensus 133 L~~V~q~G~aCHtG~~SCF~~~~~ 156 (196)
|++|+|.|||||||++||||+++.
T Consensus 92 L~~V~q~G~aCHtG~~SCF~~~~~ 115 (138)
T 1zps_A 92 VLKVEQEGGACHTGYRSCFYRSID 115 (138)
T ss_dssp EEEEEESSCSSTTSBSSSCCEEEE
T ss_pred EEEEEecCCcccCCCCCcCccccc
Confidence 999999999999999999999875
No 2
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=24.24 E-value=38 Score=24.31 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=21.6
Q ss_pred CCCeEEEEEEeCCCC-cEEEEEecCHHHHHHHHHc
Q 029236 61 NKGLAVAIAQNVDTG-AILMQGFANRDALATTISS 94 (196)
Q Consensus 61 ~~GLiPaIvQD~~tg-~VLMlaymN~EAl~~Tl~T 94 (196)
++|+||+|+ |-.| +-+. -.++...|.+.+.+
T Consensus 22 r~G~vPaVv--YG~~~e~~~-i~v~~~~~~~~l~~ 53 (94)
T 1b75_A 22 AANKFPAII--YGGKEAPLA-IELDHDKVMNMQAK 53 (94)
T ss_dssp TTTBCCEEE--ECSSSCCEE-ECCBSHHHHHHHTT
T ss_pred HCCCceEEE--ECCCCCCEE-EEECHHHHHHHHhc
Confidence 579999999 4334 4433 34688888888854
No 3
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=21.68 E-value=70 Score=28.53 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=14.4
Q ss_pred EEEEEeCCCCcEEEEE
Q 029236 66 VAIAQNVDTGAILMQG 81 (196)
Q Consensus 66 PaIvQD~~tg~VLMla 81 (196)
.+||.|+.||+||-++
T Consensus 132 a~Vvmdp~TGeILAma 147 (462)
T 3un7_A 132 AVVALEPSTGKILALV 147 (462)
T ss_dssp EEEEECTTTCBEEEEE
T ss_pred EEEEEECCCCcEEEEe
Confidence 6899999999999876
No 4
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=21.25 E-value=54 Score=22.67 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=22.1
Q ss_pred EEEEEEeCCCCcEEEEEecCHHHHHHHHHc
Q 029236 65 AVAIAQNVDTGAILMQGFANRDALATTISS 94 (196)
Q Consensus 65 iPaIvQD~~tg~VLMlaymN~EAl~~Tl~T 94 (196)
||+|+- ..|+++. |..+++.|++.|+.
T Consensus 48 vPtl~~--~~G~~v~-g~~~~~~L~~~l~~ 74 (87)
T 1ttz_A 48 VPVLRD--PMGRELD-WPFDAPRLRAWLDA 74 (87)
T ss_dssp CSEEEC--TTCCEEE-SCCCHHHHHHHHHT
T ss_pred cCeEEE--ECCEEEe-CCCCHHHHHHHHHH
Confidence 899995 4588875 78899999998864
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=19.41 E-value=1.3e+02 Score=21.84 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.9
Q ss_pred eEEEEEEeCCCCcEEEEEecCH-HHHHHHHHcCeEEEEeCCC
Q 029236 64 LAVAIAQNVDTGAILMQGFANR-DALATTISSRKATFYSRSR 104 (196)
Q Consensus 64 LiPaIvQD~~tg~VLMlaymN~-EAl~~Tl~TG~~~yySRSR 104 (196)
++.+++.| ++|++=...|-+. +.+...|+.|++.|.|+-+
T Consensus 41 ~~~~~L~D-e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 81 (114)
T 1ynx_A 41 LFNVNFLD-TSGEIRATAFNDFATKFNEILQEGKVYYVSKAK 81 (114)
T ss_dssp EEEEEEEE-TTEEEEEEECHHHHHHHHHHSCSSSEEEEESCE
T ss_pred EEEEEEEC-CCCeEEEEECHHHHHHHHhhcccCcEEEECCcE
Confidence 77888999 6888877777654 4577789999999999854
No 6
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=18.12 E-value=1.5e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=30.0
Q ss_pred EEEEeCCCCcceecCCCCC--------------CeEEEEEeeecCCCCeEEEEEe
Q 029236 97 ATFYSRSRSTLWTKGETSQ--------------NFINVQDIFLDCDRDSIIYLGK 137 (196)
Q Consensus 97 ~~yySRSR~~lW~KGetSG--------------n~Q~V~~I~~DCD~DaLL~~V~ 137 (196)
-+=|...++++|+.|.... ..-.++.|.+|||...|-|.+.
T Consensus 118 sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~n 172 (212)
T 2jk9_A 118 SWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVD 172 (212)
T ss_dssp EEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEET
T ss_pred cEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEEC
Confidence 4555666788998775421 1236899999999999999853
No 7
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=17.08 E-value=69 Score=19.92 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred cCCCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHc
Q 029236 59 WDNKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (196)
Q Consensus 59 ~d~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~T 94 (196)
|+-.| +|+++- .|++...|+.+.+.|.+.|+.
T Consensus 51 ~~v~~-~Pt~~~---~G~~~~~G~~~~~~l~~~l~~ 82 (85)
T 1nho_A 51 YGLMA-VPAIAI---NGVVRFVGAPSREELFEAIND 82 (85)
T ss_dssp TCSSC-SSEEEE---TTTEEEECSSCCHHHHHHHHH
T ss_pred CCcee-eCEEEE---CCEEEEccCCCHHHHHHHHHH
Confidence 43444 588886 688777889999999988764
No 8
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=16.63 E-value=1.4e+02 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.5
Q ss_pred EEEEEEeCCCCcEEEEE
Q 029236 65 AVAIAQNVDTGAILMQG 81 (196)
Q Consensus 65 iPaIvQD~~tg~VLMla 81 (196)
..+||.|..||+||-++
T Consensus 66 ga~Vv~d~~TG~IlAm~ 82 (390)
T 2v2f_F 66 VASTVVDVSNGKVIAQL 82 (390)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCcEEEEE
Confidence 47899999999999763
No 9
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=16.60 E-value=2.1e+02 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=29.2
Q ss_pred ccccCCCCeEEEEEEeCCCCcEEEE------EecCHHHHHHHHHc
Q 029236 56 SVKWDNKGLAVAIAQNVDTGAILMQ------GFANRDALATTISS 94 (196)
Q Consensus 56 ~i~~d~~GLiPaIvQD~~tg~VLMl------aymN~EAl~~Tl~T 94 (196)
.++.|.+|++-+-+.|..||+...+ +-|++|.+++.++.
T Consensus 86 ~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~ 130 (152)
T 2op6_A 86 TFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMIND 130 (152)
T ss_dssp EEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHH
T ss_pred EEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHH
Confidence 3455789999999999999966554 34788888876653
No 10
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=15.16 E-value=1.5e+02 Score=24.31 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=36.3
Q ss_pred CCCeEEEEEEeCCCCcEEEEEecCHHHHHHHHHcC-eEEEEeCCCCccee-cCCCCCCeEEEEEeeecCCCCeE
Q 029236 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISSR-KATFYSRSRSTLWT-KGETSQNFINVQDIFLDCDRDSI 132 (196)
Q Consensus 61 ~~GLiPaIvQD~~tg~VLMlaymN~EAl~~Tl~TG-~~~yySRSR~~lW~-KGetSGn~Q~V~~I~~DCD~DaL 132 (196)
++|+||+|+ |-.|.= ..-.++...|.+.+.++ ..+- =.|-. .|+ ...-.+++|..|-=.|.+
T Consensus 20 r~G~VPaVv--YG~~~e-~~i~v~~~el~~~l~~~~~~~v-----i~L~i~~G~--~~~vlikdvQ~hpv~~~i 83 (206)
T 1feu_A 20 RAGKLPGLM--YNRHLN-RKVYVDLVEFDKVFRQASIHHV-----IVLELPDGQ--SLPTLVRQVNLDKRRRRP 83 (206)
T ss_dssp HTTEEEEEE--ECSSCE-EEEEEEHHHHHHHHHHHTTTSE-----EEEECTTSC--EEEEEEEEEEECSSSSCE
T ss_pred HCCCceEEE--EcCCce-EEEEEcHHHHHHHHhhcCCcEE-----EEEEEcCCC--EEEEEEEEeEeCCCCCCe
Confidence 479999999 544422 55568888888888752 1111 13334 454 122345666666555554
Done!