RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029236
(196 letters)
>gnl|CDD|215196 PLN02346, PLN02346, histidine biosynthesis bifunctional protein
hisIE.
Length = 271
Score = 233 bits (597), Expect = 5e-78
Identities = 102/144 (70%), Positives = 118/144 (81%)
Query: 22 CRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQG 81
CR + A+ +++ + P L+ KV+ LLDSVKWD+KGLAVAIAQNVDTGAILMQG
Sbjct: 12 CRRDRKISAASKAAAGSKTLAEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQG 71
Query: 82 FANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP 141
FANR+A++ TISSRKATFYSRSRS LWTKGETS NFINV DI+LDCDRDSIIYLG PDGP
Sbjct: 72 FANREAISATISSRKATFYSRSRSGLWTKGETSGNFINVHDIYLDCDRDSIIYLGTPDGP 131
Query: 142 TCHTGSETCYYTSVLDALKDQPVG 165
TCHTG+ETCYYTSV DAL++
Sbjct: 132 TCHTGAETCYYTSVDDALQNGGPH 155
>gnl|CDD|235067 PRK02759, PRK02759, bifunctional phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
protein; Reviewed.
Length = 203
Score = 156 bits (396), Expect = 3e-48
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Query: 53 LLDSVKWD-NKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKG 111
++ + +D N GL AI Q+ TG +LM G+ NR+AL T+ + + TF+SRS+ LWTKG
Sbjct: 4 QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKG 63
Query: 112 ETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFIS 169
ETS N V I LDCD D+++ L +P GP CHTG+ +C+Y K P F+S
Sbjct: 64 ETSGNTQKVVSIRLDCDNDTLLVLVEPIGPACHTGTRSCFY----REKKAAPPWDFLS 117
>gnl|CDD|234598 PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.
Length = 125
Score = 137 bits (348), Expect = 4e-42
Identities = 45/109 (41%), Positives = 69/109 (63%)
Query: 51 DRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTK 110
++LD +K+D GL AIAQ+ +TG +LM + N +ALA T+ + +A ++SRSR LW K
Sbjct: 1 PKILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRK 60
Query: 111 GETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDAL 159
GETS + V ++ LDCD D+++ + G CHTG +C+Y + L
Sbjct: 61 GETSGHVQKVHEVRLDCDGDAVLLKVEQVGAACHTGRRSCFYRKLEGGL 109
>gnl|CDD|223217 COG0139, HisI, Phosphoribosyl-AMP cyclohydrolase [Amino acid
transport and metabolism].
Length = 111
Score = 134 bits (340), Expect = 3e-41
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGE 112
LLD + +D GL AI Q+ +TG +LM + N +ALA T+ + +A +YSRSR LWTKGE
Sbjct: 7 LLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGE 66
Query: 113 TSQNFINVQDIFLDCDRDSIIYLGKP-DGPTCHTGSETCYYTSVL 156
TS + V +I LDCD D+++ L + GP CHTG+ +C+Y +V
Sbjct: 67 TSGHTQKVVEIRLDCDGDALLLLVEQIGGPACHTGTRSCFYRAVG 111
>gnl|CDD|201829 pfam01502, PRA-CH, Phosphoribosyl-AMP cyclohydrolase. This enzyme
catalyzes the third step in the histidine biosynthetic
pathway. It requires Zn ions for activity.
Length = 75
Score = 123 bits (311), Expect = 3e-37
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 79 MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKP 138
M + N++AL T+ + KA ++SRSR LW KGETS N V++I LDCD D+++ +
Sbjct: 1 MLAYMNKEALEKTLETGKAHYFSRSRQRLWHKGETSGNTQKVKEIRLDCDGDALLVKVEQ 60
Query: 139 DGPTCHTGSETCYYT 153
GP CHTG +C+Y
Sbjct: 61 VGPACHTGRRSCFYR 75
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 30.6 bits (70), Expect = 0.51
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 56 SVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFY-SRSRSTLWTKGETS 114
+G + NV Q RDALA I SR + SR L K
Sbjct: 311 ETGGGGRGEVYDVPLNV------EQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGK 364
Query: 115 QNFINVQDIF 124
I V DI+
Sbjct: 365 NKVIGVLDIY 374
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 28.4 bits (64), Expect = 2.7
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 108 WTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDA 158
+ IN +I+ C +S + L +C G CY S ++
Sbjct: 231 ASGCNAYNGGINPYNIYTPCCYNSSLSLNPSSTDSC--GGYDCYDESYVEK 279
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 27.8 bits (62), Expect = 4.2
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 43 NPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAIL 78
+ LQ + LD + A+ + TG IL
Sbjct: 246 DLRLQKAAEEALDKAVANKAKGGAAVVLDPKTGEIL 281
>gnl|CDD|216740 pfam01852, START, START domain.
Length = 205
Score = 27.4 bits (61), Expect = 4.4
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 45 VLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSR 104
+++ +D + +WD + + + +G L A T +S R F R
Sbjct: 58 LVEELLDDMEYRAQWDKDVRSAETLEVISSGGALQYYVAE-LQAPTPLSPRDFVFLRYWR 116
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 27.1 bits (60), Expect = 6.4
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 62 KGLAV--AIAQNVDTGA----ILMQGFANRDALATTISSRKATFYSRSRSTL------WT 109
KG+ V + V + +L++G +NR AT+++S SRS + W
Sbjct: 167 KGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSES----SRSHAVFTCTIESWE 222
Query: 110 KGETSQN 116
K +S N
Sbjct: 223 KKASSTN 229
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 27.1 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 129 RDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVGSFIS 169
R SII +P ET Y T + L DQP G FI+
Sbjct: 420 RSSIIVSDEP------LSVETNYRTEFVAVLSDQPQGGFIT 454
>gnl|CDD|119330 cd06571, Bac_DnaA_C, C-terminal domain of bacterial DnaA proteins.
The DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple copies of DnaA,
which is an ATPase, bind to 9-mers at the origin and
form an initial complex in which the DNA strands are
being separated in an ATP-dependent step.
Length = 90
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 173 TAVLFGIPESELDSSDRFKEIIW 195
A FGI +L S R KEI
Sbjct: 8 VAEYFGISVEDLRSKSRKKEIAL 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.130 0.383
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,194,886
Number of extensions: 791492
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 14
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)