RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029236
         (196 letters)



>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 124

 Score =  109 bits (273), Expect = 1e-31
 Identities = 37/98 (37%), Positives = 63/98 (64%)

Query: 58  KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
             + + L +A+AQ+ +TG +LM  + NR+AL  T+ +  A ++S SR  LW KGE+S + 
Sbjct: 10  NINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHV 69

Query: 118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
             V+D+ +DCD D+++   + +G  CHTG  +C+Y S+
Sbjct: 70  QRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 107


>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x),
           transpeptidase domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 368

 Score = 29.3 bits (64), Expect = 0.25
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 43  NPVLQSKVDRLLDSVKWDNKGL-AVAIAQNVDTGAILMQGFANRDALATTISSRKATFYS 101
           +  LQS ++  +D+ +   KG    A   +  TG IL        A     +    T   
Sbjct: 3   SSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL--------ATTQRPTFDADTKEG 54

Query: 102 RSRSTLWTKGETSQNF 117
            +   +W       N+
Sbjct: 55  ITEDFVWRDILYQSNY 70


>d2f09a1 b.61.8.1 (A:1-82) Hypothetical protein YdhA {Escherichia
           coli [TaxId: 562]}
          Length = 82

 Score = 26.4 bits (58), Expect = 0.69
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 60  DNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFIN 119
           D K L V +       + +      +        S     Y+      W+KG+ +  +  
Sbjct: 11  DEKPLTVKLNNPRQEVSFVYDN---QLLHLKQGISASGARYTDGIYVFWSKGDEATVYKR 67

Query: 120 VQDIFLDC 127
            + +  +C
Sbjct: 68  DRIVLNNC 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 649,455
Number of extensions: 25917
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 4
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)