Query 029237
Match_columns 196
No_of_seqs 159 out of 1032
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fm0_E Molybdopterin convertin 100.0 9.6E-51 3.3E-55 328.8 17.1 141 10-150 5-146 (150)
2 2wp4_A Molybdopterin-convertin 100.0 9.5E-51 3.3E-55 328.0 16.2 134 11-144 13-146 (147)
3 2q5w_E Molybdopterin-convertin 100.0 1.9E-50 6.5E-55 326.9 17.8 135 11-145 5-139 (149)
4 2omd_A Molybdopterin-convertin 100.0 4.8E-50 1.6E-54 326.0 14.5 135 11-145 9-146 (154)
5 4ap8_A Molybdopterin synthase 100.0 2.2E-49 7.4E-54 316.5 17.6 134 1-136 2-135 (135)
6 3rpf_A Molybdopterin synthase 100.0 2.4E-46 8.3E-51 302.8 15.3 132 11-147 5-140 (148)
7 2o5a_A BH1328 protein; BHR21, 78.7 12 0.00041 28.7 8.4 73 66-141 5-78 (125)
8 2id1_A Hypothetical protein; a 77.7 11 0.00039 29.1 8.1 74 65-141 4-78 (130)
9 3ups_A Iojap-like protein; PSI 72.2 24 0.00081 27.5 8.6 77 62-141 17-94 (136)
10 4gs5_A Acyl-COA synthetase (AM 39.2 94 0.0032 26.2 7.4 81 36-131 243-325 (358)
11 2iiz_A Melanin biosynthesis pr 27.4 79 0.0027 27.3 5.0 31 93-125 99-129 (312)
12 3e7w_A D-alanine--poly(phospho 25.5 1.9E+02 0.0063 25.2 7.2 58 73-131 416-474 (511)
13 2ipr_A Large T antigen; DNA bi 22.6 1.3E+02 0.0045 23.5 4.9 51 52-112 32-82 (133)
14 3sr3_A Microcin immunity prote 21.7 58 0.002 28.2 3.1 34 91-124 9-42 (336)
15 2gvk_A Heme peroxidase; PC0426 21.3 1.1E+02 0.0036 26.4 4.6 30 94-125 106-135 (317)
16 4h1h_A LMO1638 protein; MCCF-l 20.7 57 0.0019 28.1 2.8 34 91-124 8-41 (327)
17 3tla_A MCCF; serine protease, 20.6 68 0.0023 28.4 3.3 34 91-124 39-72 (371)
18 3fce_A D-alanine--poly(phospho 20.3 2E+02 0.0069 25.0 6.3 82 35-131 391-475 (512)
No 1
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=100.00 E-value=9.6e-51 Score=328.80 Aligned_cols=141 Identities=30% Similarity=0.586 Sum_probs=126.8
Q ss_pred EEEcccCCCCHHHHHHHhc-CCCccEEEEEEEEEcCCCCCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEE
Q 029237 10 EILEENNPVDMTKYMTYVS-APQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHR 88 (196)
Q Consensus 10 ~i~~~~~piDl~~~~~~v~-~~~~GAIv~F~G~VR~~~~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR 88 (196)
.+.++.+|||++++++.+. ++++||+++|+|+||+.++|++|.+|+||+|++||++.|++|+++++++|++.++.|+||
T Consensus 5 ~v~i~~~~~d~~~~~~~~~~~~~~GAvv~F~G~VR~~~~g~~V~~L~ye~Y~~ma~~~l~~I~~ea~~r~~~~~v~v~HR 84 (150)
T 1fm0_E 5 KIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHR 84 (150)
T ss_dssp EEEEESSCCCHHHHHHHHTCCTTCCEEEEEEEECC-------CCCEEEEECHHHHHHHHHHHHHHHHHHSCEEEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHhcCCCCceEEEEEEEECCCCCCCcEeEEEEEecchHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 4556779999999999886 589999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecCCceeeecCcchhhh
Q 029237 89 LGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSEFMERR 150 (196)
Q Consensus 89 ~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~dG~~Wv~~~~~~~~~ 150 (196)
+|.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||+|.||+.||++++..+..
T Consensus 85 ~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~~~dG~~Wv~~~~~d~~~ 146 (150)
T 1fm0_E 85 IGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQA 146 (150)
T ss_dssp CEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEEETTEEEECCCCHHHHHH
T ss_pred EcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCCEEEEEEcCCCCEecCCCcCchhh
Confidence 99999999999999999999999999999999999999999999999999999998755543
No 2
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.5e-51 Score=328.00 Aligned_cols=134 Identities=38% Similarity=0.608 Sum_probs=115.2
Q ss_pred EEcccCCCCHHHHHHHhcCCCccEEEEEEEEEcCCCCCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEEec
Q 029237 11 ILEENNPVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLG 90 (196)
Q Consensus 11 i~~~~~piDl~~~~~~v~~~~~GAIv~F~G~VR~~~~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR~G 90 (196)
+.++.+|||++++++.++++++||+++|+|+||+.++|++|.+|+||+|++||++.|++|+++++++|++.++.|+||+|
T Consensus 13 ~~i~~~~~d~~~~~~~~~~~~~GAvv~F~G~VR~~~~g~~V~~Leye~y~~ma~~~l~~I~~ea~~r~~~~~v~i~HR~G 92 (147)
T 2wp4_A 13 CRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTG 92 (147)
T ss_dssp EEEESSCCCHHHHHHHHCCTTCCEEEEEEEECCC-------CEEEEECCHHHHHHHHHHHHHHHHTSSTTCEEEEEEECE
T ss_pred EEEEcCCCCHHHHHHHhhCCCCceEEEEEEEECCCCCCCcEEEEEEEeCchHHHHHHHHHHHHHHHhCCCceEEEEEEEc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecCCceeeecC
Q 029237 91 PVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENS 144 (196)
Q Consensus 91 ~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~dG~~Wv~~~ 144 (196)
.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||+|.||+.||++.
T Consensus 93 ~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~~~dG~~Wv~~~ 146 (147)
T 2wp4_A 93 ELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDR 146 (147)
T ss_dssp EECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCCEEEEECC---------
T ss_pred ccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCCEEeCCC
Confidence 999999999999999999999999999999999999999999999999999864
No 3
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=100.00 E-value=1.9e-50 Score=326.86 Aligned_cols=135 Identities=30% Similarity=0.596 Sum_probs=129.0
Q ss_pred EEcccCCCCHHHHHHHhcCCCccEEEEEEEEEcCCCCCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEEec
Q 029237 11 ILEENNPVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLG 90 (196)
Q Consensus 11 i~~~~~piDl~~~~~~v~~~~~GAIv~F~G~VR~~~~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR~G 90 (196)
+.++.+|||++++++.++++++||+++|+|+||+.++|++|.+|+||+|++||++.|++|+++++++|++.++.|+||+|
T Consensus 5 v~i~~~~~d~~~~~~~~~~~~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I~~ea~~r~~~~~v~v~HR~G 84 (149)
T 2q5w_E 5 FEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIG 84 (149)
T ss_dssp EEEESSCCCCHHHHHHHCCTTCCEEEEEEEECCSCSSSSCEEEEEEEECHHHHHHHHHHHHHHHHHHSTTCEEEEEEECE
T ss_pred EEEECCCCCHHHHHHHhcCCCCcEEEEEEEEECCCCCCCcEEEEEEEeCchHHHHHHHHHHHHHHHhCCCcEEEEEEEEc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecCCceeeecCc
Q 029237 91 PVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSE 145 (196)
Q Consensus 91 ~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~dG~~Wv~~~~ 145 (196)
.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||+|.||+.||++..
T Consensus 85 ~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~~~dG~~Wv~~~~ 139 (149)
T 2q5w_E 85 PLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQK 139 (149)
T ss_dssp EECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEECCC--
T ss_pred ccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCCEEEEEEcCCCCEEecCCC
Confidence 9999999999999999999999999999999999999999999999999998643
No 4
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=4.8e-50 Score=326.03 Aligned_cols=135 Identities=28% Similarity=0.557 Sum_probs=121.2
Q ss_pred EEcccCCCCHHHHHHHhcCCC-ccEEEEEEEEEcCCCCCe-eeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEE
Q 029237 11 ILEENNPVDMTKYMTYVSAPQ-AGAIATFSGTTRDTFDGK-IVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHR 88 (196)
Q Consensus 11 i~~~~~piDl~~~~~~v~~~~-~GAIv~F~G~VR~~~~G~-~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR 88 (196)
+.++.+|||++++++.+++|. +||+++|+|+||+.++|+ +|.+|+||+|++||++.|++|+++++++|++.++.|+||
T Consensus 9 ~~i~~~~~d~~~~~~~~~~~~~~GAvv~F~G~VR~~~~g~~~V~~Leye~y~~mae~~l~~I~~ea~~r~~l~~v~v~HR 88 (154)
T 2omd_A 9 VYLGHEWFGAERILSEYQVPEDCGAQVLFLGIPRNAPEDGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHR 88 (154)
T ss_dssp EEEESSCCCHHHHHHHCCCCTTCCEEEEEEECCCCCGGGTSCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEECCCCCHHHHHHHhcCCCCCcEEEEEEEEECCCCCCcccEEEEEEEeCchHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 445679999999999999888 999999999999999888 999999999999999999999999999999999999999
Q ss_pred eccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecCC-ceeeecCc
Q 029237 89 LGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNG-EVWKENSE 145 (196)
Q Consensus 89 ~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~dG-~~Wv~~~~ 145 (196)
+|.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||+|.|| +.||++++
T Consensus 89 ~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aPiWKkE~~~dG~~~Wv~~~~ 146 (154)
T 2omd_A 89 LGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFKEGKGEWVLGEK 146 (154)
T ss_dssp CEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEEEC-----------
T ss_pred EcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCCceecCCCC
Confidence 9999999999999999999999999999999999999999999999999 79998864
No 5
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=316.47 Aligned_cols=134 Identities=44% Similarity=0.779 Sum_probs=127.3
Q ss_pred CCCcccceEEEEcccCCCCHHHHHHHhcCCCccEEEEEEEEEcCCCCCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCC
Q 029237 1 MAGEDRTLVEILEENNPVDMTKYMTYVSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNL 80 (196)
Q Consensus 1 ~~~~~~~~v~i~~~~~piDl~~~~~~v~~~~~GAIv~F~G~VR~~~~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l 80 (196)
|.++.++++.|+ .+|||++++++++.+|.+||+++|+|+||+.++|++|.+|+||+|++||++.|++|+++++++|++
T Consensus 2 v~~~~~d~i~it--~e~l~~~~~~~~v~~p~~GAvv~F~G~VR~~~~g~~V~~L~ye~y~~ma~~~l~~I~~ea~~r~~l 79 (135)
T 4ap8_A 2 VEEKSKDVINFT--AEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPV 79 (135)
T ss_dssp CCCCCCEEEEEE--SSCCCHHHHHHHTCCTTCSEEEEEEEECCSEETTEEEEEEEEEEEETHHHHHHHHHHHHHHHHSCE
T ss_pred cccCCCCeEEEE--cCCCCHHHHHHHhcCCCCCeEEEEEEEECCCCCCCcEEEEEEEecchHHHHHHHHHHHHHHHhcCC
Confidence 345667777775 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecC
Q 029237 81 HSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSN 136 (196)
Q Consensus 81 ~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~d 136 (196)
.++.|+||+|.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||+|.|
T Consensus 80 ~~v~i~HR~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~~PiWKkE~~~D 135 (135)
T 4ap8_A 80 KHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYEE 135 (135)
T ss_dssp EEEEEEEECEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEEEC-
T ss_pred cceeehhhcccccCCCeEEEEEEEccCHHHHHHHHHHHHHHHhhcCCceeceeccC
Confidence 99999999999999999999999999999999999999999999999999999986
No 6
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=100.00 E-value=2.4e-46 Score=302.81 Aligned_cols=132 Identities=21% Similarity=0.396 Sum_probs=122.1
Q ss_pred EEcccCCCCHHHHHHH----hcCCCccEEEEEEEEEcCCCCCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEE
Q 029237 11 ILEENNPVDMTKYMTY----VSAPQAGAIATFSGTTRDTFDGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVA 86 (196)
Q Consensus 11 i~~~~~piDl~~~~~~----v~~~~~GAIv~F~G~VR~~~~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~ 86 (196)
+.++.+|||++++++. +.+|++||+++|+|+||++ +| |++|+||+|+|||++.|++|+++++++| + ++.++
T Consensus 5 v~i~~~~~d~~~~~~~~~~~~~~~~~GAvv~F~G~VR~~-~~--V~~L~ye~y~~ma~~~l~~I~~ea~~~~-~-~v~i~ 79 (148)
T 3rpf_A 5 LKIIQGALDTRELLKAYQEEACAKNFGAFCVFVGIVRKE-DN--IQGLSFDIYEALLKTWFEKWHHKAKDLG-V-VLKMA 79 (148)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEEECCCC-TT--CCEEEEEECHHHHHHHHHHHHHHHHHTT-E-EEEEE
T ss_pred EEEEcCCCCHHHHHHHHHhcccCCCCcEEEEEEEEEECC-CC--EeEEEEEcCHHHHHHHHHHHHHHHhhcC-C-EEEEE
Confidence 3446799999999885 4679999999999999997 33 9999999999999999999999999987 4 89999
Q ss_pred EEeccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhcCceeeEEEecCCceeeecCcch
Q 029237 87 HRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKASVPIWKKEVYSNGEVWKENSEFM 147 (196)
Q Consensus 87 HR~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~vPIWKkE~~~dG~~Wv~~~~~~ 147 (196)
||+|.|+|||+||+|+|+|+||++||+||+|+||+||+++||||||++.||+.|+++++-.
T Consensus 80 HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~PiWKkE~~~~g~~Wv~~r~~~ 140 (148)
T 3rpf_A 80 HSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWKYDLIHNKRIYAKERSHP 140 (148)
T ss_dssp EEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCEEEEEEETTEEEECGGGCBC
T ss_pred EEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCcEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999986543
No 7
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=78.69 E-value=12 Score=28.72 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhc-CceeeEEEecCCceee
Q 029237 66 CIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKAS-VPIWKKEVYSNGEVWK 141 (196)
Q Consensus 66 ~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~-vPIWKkE~~~dG~~Wv 141 (196)
.|.+++.++...-.-.++.++---|.....| .||.+++...+.+-..++.+.+.+|+. .+.+..|=+. ...|+
T Consensus 5 ~l~~~i~~al~dkKa~DI~vlDv~~~s~~~D--yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~-~~~Wv 78 (125)
T 2o5a_A 5 ELLQLAVNAVDDKKAEQVVALNMKGISLIAD--FFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYE-QARWV 78 (125)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECBTTBC--C--EEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCEEESTT-TTSEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEEcCCCCcccC--EEEEEEcCCHHHHHHHHHHHHHHHHHcCCccccccCCC-CCCEE
Confidence 3444444454554568888888888888887 577788888899999999999999975 2334555333 23687
No 8
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=77.73 E-value=11 Score=29.08 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhc-CceeeEEEecCCceee
Q 029237 65 RCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKAS-VPIWKKEVYSNGEVWK 141 (196)
Q Consensus 65 k~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~-vPIWKkE~~~dG~~Wv 141 (196)
++|.+++.++...-.-.++.++---|.....| .||.+++...+.+-..++.+.+.+|+. .+....|=+. ...|+
T Consensus 4 ~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~D--yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~-~~~Wv 78 (130)
T 2id1_A 4 QEISKLAIEALEDIKGKDIIELDTSKLTSLFQ--RMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHE-SGEWV 78 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCS--EEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTT-TSSEE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEcCCCCcccC--EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcCccccCCC-CCCEE
Confidence 34445555555555568888888888888888 678888999999999999999999964 2233444222 23687
No 9
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=72.22 E-value=24 Score=27.49 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHhc-CceeeEEEecCCcee
Q 029237 62 MAIRCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALDACKFLIDELKAS-VPIWKKEVYSNGEVW 140 (196)
Q Consensus 62 mA~k~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~-vPIWKkE~~~dG~~W 140 (196)
|..+.|.+++-++...-...++.++---|.-...|- ||.+++...+.+-..+..+.+.+|+. .+.+..|=+.+ ..|
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~Dy--fVIatg~S~rqv~Aiad~v~~~lk~~g~~~~~~EG~~~-~~W 93 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKSSIADY--MVIASGRSSRQVTAMAQKLADRIKAATGYVSKIEGLPA-ADW 93 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTTCSSCSE--EEEEECSSHHHHHHHHHHHHHHHHHHHCCCCEEESCSS-CSE
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCcccCE--EEEEEcCCHHHHHHHHHHHHHHHHHcCCccCcccCCCC-CCE
Confidence 333444444445555555788888887787777774 66677888888999999999999864 33346664332 368
Q ss_pred e
Q 029237 141 K 141 (196)
Q Consensus 141 v 141 (196)
+
T Consensus 94 v 94 (136)
T 3ups_A 94 V 94 (136)
T ss_dssp E
T ss_pred E
Confidence 7
No 10
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=39.19 E-value=94 Score=26.17 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=48.2
Q ss_pred EEEEEEEcCCC--CCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCChHHHHH
Q 029237 36 ATFSGTTRDTF--DGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADALD 113 (196)
Q Consensus 36 v~F~G~VR~~~--~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF~ 113 (196)
..|.|+..+.. +|.+| |+. +++++...+.+-.++..+.++-....-.-|+.++++++.......
T Consensus 243 ~~~~GR~dd~Ik~~G~~v-------~p~----eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~--- 308 (358)
T 4gs5_A 243 FQWIGRADNVINSGGVKI-------VLD----QIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEAL--- 308 (358)
T ss_dssp EEEEEEGGGEEEETTEEE-------EHH----HHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHH---
T ss_pred eEEcccccCeEEECCEEE-------CHH----HHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcC---
Confidence 45778777643 44433 433 455544445555677776666444445567777777665544322
Q ss_pred HHHHHHHHHHhcCceeeE
Q 029237 114 ACKFLIDELKASVPIWKK 131 (196)
Q Consensus 114 A~~~iID~lK~~vPIWKk 131 (196)
.+.+.+.++..+|-+|.
T Consensus 309 -~~~l~~~l~~~L~~~~~ 325 (358)
T 4gs5_A 309 -TERLTAEIRSRVSTYEN 325 (358)
T ss_dssp -HHHHHHHHHHHSCGGGS
T ss_pred -HHHHHHHHHhhCCCCCC
Confidence 25677888888886653
No 11
>2iiz_A Melanin biosynthesis protein TYRA, putative; NP_716371.1, putative melanin biosynthesis protein TYRA, STR genomics, PSI-2; HET: MSE HEM; 2.30A {Shewanella oneidensis} SCOP: d.58.4.14 PDB: 2hag_A*
Probab=27.40 E-value=79 Score=27.34 Aligned_cols=31 Identities=3% Similarity=-0.101 Sum_probs=25.6
Q ss_pred CCCCeEEEEEeecCChHHHHHHHHHHHHHHHhc
Q 029237 93 PVGETSVFIAVSAVHRADALDACKFLIDELKAS 125 (196)
Q Consensus 93 ~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~ 125 (196)
..|| ++|-+.|...+.+|.|.+.++..+...
T Consensus 99 t~gD--l~l~i~a~~~~~~~~a~r~l~~~~~~~ 129 (312)
T 2iiz_A 99 IEYD--LFVHLRCDRYDILHLVANEISQMFEDL 129 (312)
T ss_dssp CCCS--EEEEEEESCHHHHHHHHHHHHHHTTTS
T ss_pred CCCC--EEEEEEECCHHHHHHHHHHHHHHcCCc
Confidence 3566 567778999999999999999988763
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=25.46 E-value=1.9e+02 Score=25.23 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHhccCCceEEEEEEeccCCCCCeEEEEEeecCCh-HHHHHHHHHHHHHHHhcCceeeE
Q 029237 73 LARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHR-ADALDACKFLIDELKASVPIWKK 131 (196)
Q Consensus 73 ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR-~eAF~A~~~iID~lK~~vPIWKk 131 (196)
.+.+-.++..+.++-. ..=.-|+.++.+++..+.. .+..+..+.+.+.+++..|-+|.
T Consensus 416 ~l~~~p~V~~a~vv~~-~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~ 474 (511)
T 3e7w_A 416 HVRQSQYVRSAVVIPY-QPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMI 474 (511)
T ss_dssp HHHHSTTEEEEEEEEE-CSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGS
T ss_pred HHHhCCCcceEEEEEE-cCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhC
Confidence 3344556777776532 2223456666665554432 33344567788888888886653
No 13
>2ipr_A Large T antigen; DNA binding protein; 1.50A {Simian virus 40} SCOP: d.89.1.1 PDB: 2itj_A 2itl_A 2nl8_A 1tbd_A 2fuf_A* 2if9_A 2ntc_A 2tbd_A 3qk2_A* 1z1d_B 3qn2_A*
Probab=22.57 E-value=1.3e+02 Score=23.46 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=37.9
Q ss_pred eEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCChHHHH
Q 029237 52 VELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHRADAL 112 (196)
Q Consensus 52 ~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR~eAF 112 (196)
..|-|+.. .+++.+-..+.++|.... ...|..+ +..+|++...++||-.|.
T Consensus 32 ~fliyTT~-----eK~~~Ly~~l~~kF~~~f-~srh~~~----~~~ll~~it~~khRVSAv 82 (133)
T 2ipr_A 32 CFAIYTTK-----EKAALLYKKIMEKYSVTF-ISRHNSY----NHNILFFLTPHRHRVSAI 82 (133)
T ss_dssp EEEEEECH-----HHHHHHHHHHHHHTTCSE-EEEEEET----TEEEEEEEEEEEEEHHHH
T ss_pred eEEEEEcH-----HHHHHHHHHHHHhcCcce-EEEEeeC----CCcEEEEEcCCCccHHHH
Confidence 44677765 356667777767899888 4666643 559999999999998775
No 14
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=21.71 E-value=58 Score=28.25 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=27.0
Q ss_pred cCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHh
Q 029237 91 PVPVGETSVFIAVSAVHRADALDACKFLIDELKA 124 (196)
Q Consensus 91 ~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~ 124 (196)
.|++||.|-+|+-||+-....-+..+..+++|+.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~ 42 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQ 42 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHh
Confidence 5899999999999998765444667777888875
No 15
>2gvk_A Heme peroxidase; PC04261D, structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.60A {Bacteroides thetaiotaomicron} SCOP: d.58.4.14
Probab=21.28 E-value=1.1e+02 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCCeEEEEEeecCChHHHHHHHHHHHHHHHhc
Q 029237 94 VGETSVFIAVSAVHRADALDACKFLIDELKAS 125 (196)
Q Consensus 94 vGE~iV~VaVss~HR~eAF~A~~~iID~lK~~ 125 (196)
.|| ++|-+.|...+.+|.|++.++..+...
T Consensus 106 ~gD--l~i~i~a~~~~~~~~a~r~l~~~~~~~ 135 (317)
T 2gvk_A 106 PGD--LLFHIRAKQMGLCFEFASILDEKLKGA 135 (317)
T ss_dssp CCS--EEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CCc--EEEEEEECCHHHHHHHHHHHHHHcCCc
Confidence 466 577788999999999999999998753
No 16
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.71 E-value=57 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=25.5
Q ss_pred cCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHh
Q 029237 91 PVPVGETSVFIAVSAVHRADALDACKFLIDELKA 124 (196)
Q Consensus 91 ~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~ 124 (196)
.|++||.|-+|+-|++-....-+..+..+++|+.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~ 41 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTD 41 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHh
Confidence 5899999999999987654334456667788875
No 17
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.58 E-value=68 Score=28.41 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=27.5
Q ss_pred cCCCCCeEEEEEeecCChHHHHHHHHHHHHHHHh
Q 029237 91 PVPVGETSVFIAVSAVHRADALDACKFLIDELKA 124 (196)
Q Consensus 91 ~L~vGE~iV~VaVss~HR~eAF~A~~~iID~lK~ 124 (196)
.|++||.|-+|+-||+-....-+..+..+++|+.
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~ 72 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQR 72 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHH
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHh
Confidence 5899999999999998765555667777888876
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=20.34 E-value=2e+02 Score=24.96 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=46.1
Q ss_pred EEEEEEEEcCCC--CCeeeeEEEEEEehhhHHHHHHHHHHHHHhccCCceEEEEEEeccCCCCCeEEEEEeecCCh-HHH
Q 029237 35 IATFSGTTRDTF--DGKIVVELRYESYVSMAIRCIKSICSLARSSWNLHSIAVAHRLGPVPVGETSVFIAVSAVHR-ADA 111 (196)
Q Consensus 35 Iv~F~G~VR~~~--~G~~V~~L~yEay~~mA~k~L~~I~~ea~~~~~l~~v~I~HR~G~L~vGE~iV~VaVss~HR-~eA 111 (196)
.+.|.|+..+.. +|..| |+. +|.+.+.+-.++..+.++-. ..=.-|+.++.+++....- .+.
T Consensus 391 ~l~i~GR~~d~ik~~G~~v-------~p~-------eIE~~l~~~p~V~~a~vv~~-~~~~~~~~~~a~vv~~~~~~~~~ 455 (512)
T 3fce_A 391 LLFYNGRLDFQIKLHGYRM-------ELE-------EIEHHLRACSYVEGAVIVPI-KKGEKYDYLLAVVVPGEHSFEKE 455 (512)
T ss_dssp EEEEEEEGGGCEEETTEEE-------CHH-------HHHHHHHHSTTEEEEEEEEE-EETTEEEEEEEEEEECSCCCSSH
T ss_pred EEEEecccCCEEEECCEEE-------CHH-------HHHHHHHhCCCcceEEEEEE-ecCCCceEEEEEEecCCccccch
Confidence 466888777653 44433 433 23333344566777766521 1123355566666654432 233
Q ss_pred HHHHHHHHHHHHhcCceeeE
Q 029237 112 LDACKFLIDELKASVPIWKK 131 (196)
Q Consensus 112 F~A~~~iID~lK~~vPIWKk 131 (196)
....+.+.+.+++..|-+|.
T Consensus 456 ~~~~~~l~~~l~~~L~~~~~ 475 (512)
T 3fce_A 456 FKLTSAIKKELNERLPNYMI 475 (512)
T ss_dssp HHHHHHHHHHHHTTSCGGGS
T ss_pred hhhHHHHHHHHHhhCchhcC
Confidence 44566788999999887654
Done!