BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029238
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 38 FIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPG 97
I C T P+LC ++L K L S+++ A AK TS ++ ++
Sbjct: 5 LISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-A 63
Query: 98 MKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCS 157
P+ + C E +D++D L ++ + + ++ N + + SAA TC
Sbjct: 64 TDPKLKGRYETCSENYADAIDSLGQA---KQFLTSGDY----NSLNIYASAAFDGAGTCE 116
Query: 158 DGFE 161
D FE
Sbjct: 117 DSFE 120
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 26/158 (16%)
Query: 39 IKTSCSSTTYPTLCYKSLARHASLIQTSPKL--LAHASLNVTLAKAKSTSAVMLKMSKS- 95
+ T C T P+ C K L + SP L LA +L+ T A+A T LK +S
Sbjct: 8 MSTICDKTLNPSFCLKFLNTKFA----SPNLQALAKTTLDSTQARATQT----LKKLQSI 59
Query: 96 --PGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDD 153
G+ PR A + C++E ++ L ++ + AS + MN VSAAL
Sbjct: 60 IDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVSAALDGA 112
Query: 154 TTCSDGFEK-NTVNGKVVRG-----QIVKIAHMTSNAL 185
TC D ++ +V+ VV + IA + SN L
Sbjct: 113 DTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 150
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 39 IKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKS--- 95
+ T C T P+ C K L + + + LA +L+ T A+A T LK +S
Sbjct: 7 MSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQT----LKKLQSIID 60
Query: 96 PGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTT 155
G+ PR A + C++E ++ L ++ + AS + MN VSAAL T
Sbjct: 61 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVSAALDGADT 113
Query: 156 CSDGFEK-NTVNGKVVRG-----QIVKIAHMTSNAL 185
C D ++ +V+ VV + IA + SN L
Sbjct: 114 CLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 149
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 39 IKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKS--- 95
+ T C T P+ C K L + + + LA +L+ T A+A T LK +S
Sbjct: 8 MSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQT----LKKLQSIID 61
Query: 96 PGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTT 155
G+ PR A + C++E ++ L ++ + AS + MN VSAAL T
Sbjct: 62 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL----ASGDGMGMN---MKVSAALDGADT 114
Query: 156 CSDGFEK-NTVNGKVVRG-----QIVKIAHMTSNAL 185
C D ++ +V+ VV + IA + SN L
Sbjct: 115 CLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNML 150
>pdb|3N8U|A Chain A, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus At 1.44 A Resolution
pdb|3N8U|B Chain B, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus At 1.44 A Resolution
pdb|3OYV|A Chain A, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus Atcc 8483 At 1.25 A Resolution
Length = 361
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 60 ASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDE 119
A+L++T L +A N + +S +++ S SP A A+ C+EE+ D E
Sbjct: 32 AALLKTDATNLYNA-WNSSYKGGESYASLFKAHSGSP-----YASALS-CVEEIVDKCAE 84
Query: 120 LRKSIG------EMGLIKASNFELTMNDIQTWVSAALTDDTT 155
+ +G L KA N E + +++W S DD T
Sbjct: 85 IANEVGTAKIGDPYNLYKAGNTEEALYAVESWYSWHSRDDYT 126
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 138 TMNDIQTWVSAALTDDTTCSDGFEKNT--VNGKVVRG 172
T ND TW T D C DG+E NT G +V G
Sbjct: 501 TKNDF-TWFKLNDTLDYECHDGYESNTGSTTGSIVCG 536
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 138 TMNDIQTWVSAALTDDTTCSDGFEKNT--VNGKVVRG 172
T ND TW T D C DG+E NT G +V G
Sbjct: 501 TKNDF-TWFKLNDTLDYECHDGYESNTGSTTGSIVCG 536
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 97 GMKPREADAMQDCLEELSDSVDELRKSIGEMGL 129
G +P + DA+ D L ++S VD+L+ I EM L
Sbjct: 181 GEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDL 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.123 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,662,817
Number of Sequences: 62578
Number of extensions: 150755
Number of successful extensions: 355
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 14
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)