Query 029238
Match_columns 196
No_of_seqs 130 out of 880
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 1.2E-34 4.2E-39 221.0 16.0 149 36-192 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 1.7E-34 5.7E-39 220.5 13.5 149 34-192 3-151 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 9.5E-34 3.3E-38 215.8 15.1 147 34-191 2-149 (150)
4 2l7n_A Talin-1; integrin, bund 42.7 1E+02 0.0035 23.0 7.6 87 70-157 77-164 (168)
5 3cjh_B Mitochondrial import in 26.8 1.1E+02 0.0038 18.6 4.9 29 98-126 34-62 (64)
6 3dxr_B Mitochondrial import in 23.6 1.5E+02 0.0053 19.7 4.9 32 98-129 56-87 (95)
7 2bsk_B Mitochondrial import in 21.4 1.8E+02 0.0061 19.0 4.9 32 98-129 43-74 (90)
8 3dxr_A Mitochondrial import in 19.5 2E+02 0.0068 18.8 5.0 32 98-129 50-81 (89)
9 2bsk_A Mitochondrial import in 18.8 2.1E+02 0.0071 18.7 5.0 32 98-129 41-72 (89)
10 1r7c_A Genome polyprotein; mem 17.2 75 0.0026 16.8 1.7 12 139-150 16-27 (31)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=1.2e-34 Score=220.98 Aligned_cols=149 Identities=22% Similarity=0.363 Sum_probs=135.6
Q ss_pred hHHHhcccCCCCChhchHHHhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhh
Q 029238 36 TEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSD 115 (196)
Q Consensus 36 ~~~i~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~L~~~si~~a~~~a~~~~~~~~~l~~~~~~~~~~~~aL~dC~ely~~ 115 (196)
.++|+.+|++|+||++|+++|.++|++...||++|+++++++++.+++.+..++..+.+.. .+|..+.+|+||.++|++
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y~~ 81 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYETCSENYAD 81 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999887789999999999999999999999999987654 479999999999999999
Q ss_pred HHHHHHHHHHHhcccccccchhhhhHHHHHHHHhhcccchhhhhhCCCCCchhhhhhHHHHHHHHHHHHHHHHHhhh
Q 029238 116 SVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQIVKIAHMTSNALALINSYA 192 (196)
Q Consensus 116 a~~~L~~A~~~l~~~~~~~~~~~~~d~~twLSaAlt~~~TC~dgf~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l~ 192 (196)
++++|++++..|..+ .++|+++|||+|++|++||+|||.+.+....+|..++.++.+|++|+|+|++.++
T Consensus 82 a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 82 AIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999864 3789999999999999999999987652223489999999999999999999875
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.7e-34 Score=220.53 Aligned_cols=149 Identities=22% Similarity=0.324 Sum_probs=132.7
Q ss_pred chhHHHhcccCCCCChhchHHHhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 029238 34 ASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEEL 113 (196)
Q Consensus 34 ~~~~~i~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~L~~~si~~a~~~a~~~~~~~~~l~~~~~~~~~~~~aL~dC~ely 113 (196)
++.++|+.+|++|+||++|+++| +|.+...||++|+++++++++.+++.+..++..+.+.. .+|..+.+|+||.|+|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEY 79 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 55678999999999999999999 67666789999999999999999999999999987654 4899999999999999
Q ss_pred hhHHHHHHHHHHHhcccccccchhhhhHHHHHHHHhhcccchhhhhhCCCCCchhhhhhHHHHHHHHHHHHHHHHHhhh
Q 029238 114 SDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQIVKIAHMTSNALALINSYA 192 (196)
Q Consensus 114 ~~a~~~L~~A~~~l~~~~~~~~~~~~~d~~twLSaAlt~~~TC~dgf~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l~ 192 (196)
++++++|++++..|..+ .++|+++|||+|++|++||+|||++.+...++|..++.++.+|++|+|+|++.+.
T Consensus 80 ~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 80 ESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 99999999999999864 3799999999999999999999997642223489999999999999999999875
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=9.5e-34 Score=215.78 Aligned_cols=147 Identities=15% Similarity=0.208 Sum_probs=132.3
Q ss_pred chhHHHhcccCCCCChhchHHHhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 029238 34 ASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEEL 113 (196)
Q Consensus 34 ~~~~~i~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~L~~~si~~a~~~a~~~~~~~~~l~~~~~~~~~~~~aL~dC~ely 113 (196)
+..++|+.+|++|+||++|+++|.++|++..+|+++|++++++.++.+++.+..++..+.+.. .+|..+.+|+||.++|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHH
Confidence 557899999999999999999999999987789999999999999999999999999987654 4788899999999999
Q ss_pred hhHH-HHHHHHHHHhcccccccchhhhhHHHHHHHHhhcccchhhhhhCCCCCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 029238 114 SDSV-DELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQIVKIAHMTSNALALINSY 191 (196)
Q Consensus 114 ~~a~-~~L~~A~~~l~~~~~~~~~~~~~d~~twLSaAlt~~~TC~dgf~~~~~~~~~l~~~~~~~~~L~snaLaiv~~l 191 (196)
++++ ++|++++..+..+ .++++++|||+|++|++||+|||++. . .+|..++.++.+|++|+|+|++.|
T Consensus 81 ~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~--~-~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 81 KVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS--K-SPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS--C-CTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC--C-CccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 7999999999853 47899999999999999999999842 1 248999999999999999999876
No 4
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=42.67 E-value=1e+02 Score=22.96 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHH-HHHHHHHHHHhhHHHHHHHHHHHhcccccccchhhhhHHHHHHHH
Q 029238 70 LAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREA-DAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSA 148 (196)
Q Consensus 70 L~~~si~~a~~~a~~~~~~~~~l~~~~~~~~~~~-~aL~dC~ely~~a~~~L~~A~~~l~~~~~~~~~~~~~d~~twLSa 148 (196)
+.-++-+.+...++.....++.+.... .+|..+ .-+..+.+..+++..-++++...+..............+---+|.
T Consensus 77 y~g~aar~~A~aL~~lt~avrgvaatt-~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~ 155 (168)
T 2l7n_A 77 YAGIAARDVAGGLRSLAQAARGVAALT-SDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQ 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 444443333334444444444443322 345444 455555688888888888888777652111111234455556777
Q ss_pred hhcccchhh
Q 029238 149 ALTDDTTCS 157 (196)
Q Consensus 149 Alt~~~TC~ 157 (196)
++.....|+
T Consensus 156 aL~~~v~cL 164 (168)
T 2l7n_A 156 ALNRCVSCL 164 (168)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhcC
Confidence 765544453
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=26.82 E-value=1.1e+02 Score=18.57 Aligned_cols=29 Identities=10% Similarity=0.401 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 029238 98 MKPREADAMQDCLEELSDSVDELRKSIGE 126 (196)
Q Consensus 98 ~~~~~~~aL~dC~ely~~a~~~L~~A~~~ 126 (196)
.+..+..++..|.+-|-++-..+.+....
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999999888776654
No 6
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=23.63 E-value=1.5e+02 Score=19.73 Aligned_cols=32 Identities=13% Similarity=0.416 Sum_probs=26.9
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 029238 98 MKPREADAMQDCLEELSDSVDELRKSIGEMGL 129 (196)
Q Consensus 98 ~~~~~~~aL~dC~ely~~a~~~L~~A~~~l~~ 129 (196)
.+..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 56 LNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999988877664
No 7
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=21.45 E-value=1.8e+02 Score=19.01 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 029238 98 MKPREADAMQDCLEELSDSVDELRKSIGEMGL 129 (196)
Q Consensus 98 ~~~~~~~aL~dC~ely~~a~~~L~~A~~~l~~ 129 (196)
.+..+..|+..|.+-|-++-..+.+.+..+..
T Consensus 43 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 43 LSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999888876664
No 8
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=19.51 E-value=2e+02 Score=18.78 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 029238 98 MKPREADAMQDCLEELSDSVDELRKSIGEMGL 129 (196)
Q Consensus 98 ~~~~~~~aL~dC~ely~~a~~~L~~A~~~l~~ 129 (196)
.+..+..|+..|.+-|-++-..+...+..+..
T Consensus 50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999988887664
No 9
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=18.82 E-value=2.1e+02 Score=18.71 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Q 029238 98 MKPREADAMQDCLEELSDSVDELRKSIGEMGL 129 (196)
Q Consensus 98 ~~~~~~~aL~dC~ely~~a~~~L~~A~~~l~~ 129 (196)
.+..+..|+..|.+-|-++-..+.+....+..
T Consensus 41 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 41 VKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999988877764
No 10
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=17.23 E-value=75 Score=16.81 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=7.7
Q ss_pred hhHHHHHHHHhh
Q 029238 139 MNDIQTWVSAAL 150 (196)
Q Consensus 139 ~~d~~twLSaAl 150 (196)
..|.++||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 457777777654
Done!