BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029239
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XVL|A Chain A, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
pdb|1XVL|B Chain B, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
pdb|1XVL|C Chain C, The Three-Dimensional Structure Of Mntc From Synechocystis
6803
Length = 321
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 79 VRQAYHNLCPGCAKEQNVCAKCCSR----VDRVIGRDLAEVEAEQKML 122
+RQA+ L P AK N A S +DR +G DL +V A Q+ L
Sbjct: 160 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFL 207
>pdb|4IRM|A Chain A, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|B Chain B, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|C Chain C, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
Length = 330
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 79 VRQAYHNLCPGCAKEQNVCAKCCSR----VDRVIGRDLAEVEAEQKML 122
+RQA+ L P AK N A S +DR +G DL +V A Q+ L
Sbjct: 169 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFL 216
>pdb|3UJP|A Chain A, Structure Of Mntc Protein At 2.7a
pdb|3UJP|B Chain B, Structure Of Mntc Protein At 2.7a
pdb|3UJP|C Chain C, Structure Of Mntc Protein At 2.7a
Length = 307
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 79 VRQAYHNLCPGCAKEQNVCAKCCSR----VDRVIGRDLAEVEAEQKML 122
+RQA+ L P AK N A S +DR +G DL +V A Q+ L
Sbjct: 146 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFL 193
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 31.2 bits (69), Expect = 0.37, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 56 KRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVC-AKCCSRVDRVIGRDLAE 114
+RR GK +P+ P C C R V++ + CP +C AK + R +
Sbjct: 391 ERRTGKERPIRWPEACPECGHRLVKEGKVHRCP-----NPLCPAKRFEAIRHYASRKAMD 445
Query: 115 VEA-EQKMLEAALKNARERD 133
+E +K++E L+ RD
Sbjct: 446 IEGLGEKLIERLLEKGLVRD 465
>pdb|2YAX|B Chain B, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
pdb|2YAX|C Chain C, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
pdb|2YAX|F Chain F, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
Length = 318
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKE 93
+++ + KPL P Q KR V A H++ PG K+
Sbjct: 139 KKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQ 175
>pdb|2YAV|A Chain A, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAV|B Chain B, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAV|C Chain C, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAV|D Chain D, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAV|E Chain E, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAV|F Chain F, Zn Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|A Chain A, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|B Chain B, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|C Chain C, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|D Chain D, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|E Chain E, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAW|F Chain F, Hg Inhibited Sulfur Oxygenase Reductase
pdb|2YAX|A Chain A, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
pdb|2YAX|D Chain D, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
pdb|2YAX|E Chain E, Iodoacetamide Inhibited Sulfur Oxygenase Reductase
Length = 318
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKE 93
+++ + KPL P Q KR V A H++ PG K+
Sbjct: 139 KKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQ 175
>pdb|2CB2|A Chain A, Sulfur Oxygenase Reductase From Acidianus Ambivalens
pdb|2CB2|B Chain B, Sulfur Oxygenase Reductase From Acidianus Ambivalens
pdb|2CB2|C Chain C, Sulfur Oxygenase Reductase From Acidianus Ambivalens
pdb|2CB2|D Chain D, Sulfur Oxygenase Reductase From Acidianus Ambivalens
pdb|2CB2|E Chain E, Sulfur Oxygenase Reductase From Acidianus Ambivalens
pdb|2CB2|F Chain F, Sulfur Oxygenase Reductase From Acidianus Ambivalens
Length = 318
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKE 93
+++ + KPL P Q KR V A H++ PG K+
Sbjct: 139 KKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQ 175
>pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 584
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 44 GVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCP 88
GV P ++ +RR G+ +P+ P C C R V++ + CP
Sbjct: 383 GVIPEVL-RVLKERRTGEERPIRWPETCPECGHRLVKEGKVHRCP 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,151,504
Number of Sequences: 62578
Number of extensions: 179348
Number of successful extensions: 325
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 11
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)