BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029239
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MD7|CI085_HUMAN Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1
SV=1
Length = 179
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 4 NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWKRRYGKY 62
N +R KHQN +++K K + + +++ KL GVC RCK+ ++W+ +Y KY
Sbjct: 7 NVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKY 61
Query: 63 KPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
KPLS+P KC +C ++ V+ +YH +C CA E VCAKC + D VI
Sbjct: 62 KPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107
>sp|Q9CQ90|CI085_MOUSE Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1
Length = 155
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
MSS N +R KHQN + +K K + + +++ KL GVC RCK+ ++W+
Sbjct: 1 MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
+Y KYKPLS+P KC +C ++ V+ +YH +C CA E VCAKC + + VI
Sbjct: 56 VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEEIVI 107
>sp|Q68FU5|CI085_RAT Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 155
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 MSS---NSSRRGAPKHQNRYAWK-PKAGQKINEREVGGKLRPYPEITGVCPRCKDQIDWK 56
MSS N +R KHQN + +K K + + +++ KL GVC RCK+ ++W+
Sbjct: 1 MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWR 55
Query: 57 RRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVI 108
+Y KYKPLS+P KC +C ++ V+ +YH +C CA + VCAKC + VI
Sbjct: 56 VKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKEEEIVI 107
>sp|Q9PL77|PNP_CHLMU Polyribonucleotide nucleotidyltransferase OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=pnp PE=3 SV=1
Length = 693
Score = 34.3 bits (77), Expect = 0.58, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 55 WKRRYGKYKPLSE----PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIGR 110
W++ GK K LS P Q +R+ + ++++ + ++ +
Sbjct: 221 WQKAIGKEKQLSAVLDLPEDVQNVVSNFIREKFEKALS--FRDRDALEQVSKELEESVVA 278
Query: 111 DLAEVEAEQKML--EAALKNARERDRRILLRAVNLKIQQK----IQPTKIKLGNYFLP 162
+L + E++ +L +AA KNA+ R L+R + +++ + I+P I++ FLP
Sbjct: 279 NLVQEESDFSLLNVKAAFKNAKSNQMRALIRDLGIRVDGRSTTEIRPISIEVS--FLP 334
>sp|Q6C3J3|MRH4_YARLI ATP-dependent RNA helicase MRH4, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRH4 PE=3 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 1 MSSNSSRR------GAPKHQNRY-AWKPKAGQKINEREVGGKLRPYPEITGV 45
M +NS RR G P R+ A +PK K+N RE GGK +P P TGV
Sbjct: 1 MFANSLRRITKPCLGVPDMAVRHIAMRPKPKVKVNSREGGGKGKPRPS-TGV 51
>sp|B2S2I9|RPOC_TREPS DNA-directed RNA polymerase subunit beta' OS=Treponema pallidum
subsp. pallidum (strain SS14) GN=rpoC PE=3 SV=1
Length = 1416
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 105 DRVIGRDLAE-VEAEQKMLEAALKNARERDRRILLRAVNLKIQQKI---QPTKIKLGNYF 160
D ++G L E V E M+E RRI +++Q ++ + LG+Y+
Sbjct: 1056 DIILGSTLIEEVNTETGMVE----------RRITTLKTGIQLQPRVFISDESGNALGSYY 1105
Query: 161 LPHHLRNMLQKAEVTKTITMVITWIKSMMKMMVLT 195
LP R M+++ K T+++ K++ K +T
Sbjct: 1106 LPEEARLMVEEGAQVKAGTVIVKLAKAIQKTSDIT 1140
>sp|O83270|RPOC_TREPA DNA-directed RNA polymerase subunit beta' OS=Treponema pallidum
(strain Nichols) GN=rpoC PE=3 SV=1
Length = 1416
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 105 DRVIGRDLAE-VEAEQKMLEAALKNARERDRRILLRAVNLKIQQKI---QPTKIKLGNYF 160
D ++G L E V E M+E RRI +++Q ++ + LG+Y+
Sbjct: 1056 DIILGSTLIEEVNTETGMVE----------RRITTLKTGIQLQPRVFISDESGNALGSYY 1105
Query: 161 LPHHLRNMLQKAEVTKTITMVITWIKSMMKMMVLT 195
LP R M+++ K T+++ K++ K +T
Sbjct: 1106 LPEEARLMVEEGAQVKAGTVIVKLAKAIQKTSDIT 1140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,757,465
Number of Sequences: 539616
Number of extensions: 2584990
Number of successful extensions: 7727
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7721
Number of HSP's gapped (non-prelim): 32
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)