Query 029239
Match_columns 196
No_of_seqs 96 out of 98
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jrp_A Putative cytoplasmic pr 89.2 0.0087 3E-07 44.3 -5.0 48 43-102 2-49 (81)
2 2jne_A Hypothetical protein YF 74.0 0.11 3.8E-06 40.0 -4.3 51 39-101 28-78 (101)
3 2ea5_A Cell growth regulator w 71.3 1.5 5.1E-05 29.7 1.3 42 68-109 15-61 (68)
4 2vje_B MDM4 protein; proto-onc 66.7 1.3 4.4E-05 29.4 0.2 43 66-108 5-58 (63)
5 2vje_A E3 ubiquitin-protein li 54.6 2.6 9E-05 27.9 0.0 44 65-108 5-59 (64)
6 2ecg_A Baculoviral IAP repeat- 50.2 6.3 0.00022 26.5 1.4 24 84-107 45-69 (75)
7 2cup_A Skeletal muscle LIM-pro 41.0 1.7 6E-05 30.4 -2.7 62 42-105 4-77 (101)
8 3hug_A RNA polymerase sigma fa 40.6 75 0.0026 21.5 5.8 41 117-175 26-66 (92)
9 2yho_A E3 ubiquitin-protein li 38.7 11 0.00037 26.0 1.2 41 68-108 18-63 (79)
10 4ic3_A E3 ubiquitin-protein li 38.4 11 0.00038 25.3 1.2 25 83-107 43-68 (74)
11 3gox_A Restriction endonucleas 37.1 8.6 0.0003 32.6 0.5 23 83-105 103-148 (200)
12 3vk6_A E3 ubiquitin-protein li 36.9 7.9 0.00027 29.6 0.2 26 83-108 21-51 (101)
13 2l7x_A Envelope glycoprotein; 34.4 8.8 0.0003 28.1 0.1 14 67-80 4-17 (77)
14 2apo_B Ribosome biogenesis pro 33.2 15 0.00052 25.5 1.2 28 68-109 6-33 (60)
15 1vq8_1 50S ribosomal protein L 32.2 7.4 0.00025 27.1 -0.6 24 68-102 17-40 (57)
16 2zkr_2 60S ribosomal protein L 30.2 12 0.0004 28.5 0.2 28 68-106 16-43 (97)
17 2lcq_A Putative toxin VAPC6; P 28.7 6.7 0.00023 30.3 -1.4 21 84-104 132-158 (165)
18 3cao_A Cytochrome C3; tetrahem 28.2 23 0.00077 25.5 1.4 56 45-102 35-101 (103)
19 3t6p_A Baculoviral IAP repeat- 28.1 10 0.00034 33.5 -0.6 41 68-108 295-340 (345)
20 4ayc_A E3 ubiquitin-protein li 28.1 59 0.002 24.0 3.8 22 84-105 73-98 (138)
21 3j21_e 50S ribosomal protein L 27.4 23 0.00077 25.0 1.2 24 68-102 17-40 (62)
22 1zbd_B Rabphilin-3A; G protein 23.9 14 0.00046 28.8 -0.5 35 67-103 54-89 (134)
23 2aus_D NOP10, ribosome biogene 23.3 34 0.0012 23.7 1.5 28 68-109 5-32 (60)
24 2ckl_B Ubiquitin ligase protei 22.9 41 0.0014 25.5 2.1 40 45-104 56-100 (165)
25 2ckl_A Polycomb group ring fin 22.5 36 0.0012 23.9 1.6 22 84-105 36-61 (108)
26 2k0a_A PRE-mRNA-splicing facto 22.4 18 0.00063 28.0 -0.0 28 59-93 53-81 (109)
27 3lrq_A E3 ubiquitin-protein li 22.3 71 0.0024 22.3 3.1 42 44-105 23-69 (100)
28 2zet_C Melanophilin; complex, 21.6 19 0.00064 28.6 -0.1 49 51-102 51-101 (153)
29 1or7_A Sigma-24, RNA polymeras 21.6 58 0.002 24.0 2.7 50 118-188 130-180 (194)
30 3iz5_l 60S ribosomal protein L 21.2 19 0.00065 27.3 -0.1 16 92-107 29-44 (94)
31 1jm7_A BRCA1, breast cancer ty 21.1 48 0.0016 23.0 2.0 22 84-105 41-69 (112)
32 2er8_A Regulatory protein Leu3 21.1 28 0.00095 22.9 0.7 29 70-98 5-37 (72)
33 1gyo_A Cytochrome C3, A dimeri 20.7 52 0.0018 24.2 2.2 49 45-102 35-105 (109)
34 4a18_A RPL37, ribosomal protei 20.2 18 0.00061 27.4 -0.5 15 92-106 29-43 (94)
No 1
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=89.18 E-value=0.0087 Score=44.31 Aligned_cols=48 Identities=31% Similarity=0.728 Sum_probs=39.7
Q ss_pred cCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHhHhcChhHHhhccccccccC
Q 029239 43 TGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS 102 (196)
Q Consensus 43 ~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k 102 (196)
+..|+.|...|+|.-+ ...|..|++-=...| .|+.|...+.+|..||-
T Consensus 2 ~~~CP~C~~~l~~~~~---------~~~C~~C~~~~~~~a---fCPeCgq~Le~lkACGA 49 (81)
T 2jrp_A 2 EITCPVCHHALERNGD---------TAHCETCAKDFSLQA---LCPDCRQPLQVLKACGA 49 (81)
T ss_dssp CCCCSSSCSCCEECSS---------EEECTTTCCEEEEEE---ECSSSCSCCCEEEETTE
T ss_pred CCCCCCCCCccccCCC---------ceECccccccCCCcc---cCcchhhHHHHHHhcCC
Confidence 4679999999999622 456999988766666 79999999999999983
No 2
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.95 E-value=0.11 Score=39.97 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=39.4
Q ss_pred CCCccCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHhHhcChhHHhhcccccccc
Q 029239 39 YPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101 (196)
Q Consensus 39 ~~~~~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~ 101 (196)
...++..|+.|...|+|. ..-.-|..|.+--.+.| .|++|..++.+.-.||
T Consensus 28 ~~~M~~~CP~Cq~eL~~~---------g~~~hC~~C~~~f~~~a---~CPdC~q~LevLkACG 78 (101)
T 2jne_A 28 GSHMELHCPQCQHVLDQD---------NGHARCRSCGEFIEMKA---LCPDCHQPLQVLKACG 78 (101)
T ss_dssp ---CCCBCSSSCSBEEEE---------TTEEEETTTCCEEEEEE---ECTTTCSBCEEEEETT
T ss_pred cccccccCccCCCcceec---------CCEEECccccchhhccc---cCcchhhHHHHHHHhc
Confidence 345788999999999996 23456999988655554 5999999999999998
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.26 E-value=1.5 Score=29.74 Aligned_cols=42 Identities=29% Similarity=0.621 Sum_probs=31.4
Q ss_pred cccccccccchhhHH----hHh-cChhHHhhccccccccCccccccC
Q 029239 68 PAKCQRCTKRAVRQA----YHN-LCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 68 p~KC~kC~qktVk~A----YH~-iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
...|..|......-+ -|. +|..|+.....|+-|..+...++.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFA 61 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEEC
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEE
Confidence 566777766554433 467 999999999999999988776543
No 4
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=66.73 E-value=1.3 Score=29.40 Aligned_cols=43 Identities=28% Similarity=0.551 Sum_probs=30.8
Q ss_pred CCcccccccccchhh------HHhHh-cChhHHhhcc----ccccccCcccccc
Q 029239 66 SEPAKCQRCTKRAVR------QAYHN-LCPGCAKEQN----VCAKCCSRVDRVI 108 (196)
Q Consensus 66 t~p~KC~kC~qktVk------~AYH~-iC~~CA~~~~----vCaKC~k~~~~i~ 108 (196)
.....|..|...... -=-|. .|..|+.... .|+-|..+...++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 345678888775432 22366 7999999988 9999998876544
No 5
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=54.56 E-value=2.6 Score=27.94 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCCcccccccccchhhHH------hHh-cChhHHhhccc----cccccCcccccc
Q 029239 65 LSEPAKCQRCTKRAVRQA------YHN-LCPGCAKEQNV----CAKCCSRVDRVI 108 (196)
Q Consensus 65 Lt~p~KC~kC~qktVk~A------YH~-iC~~CA~~~~v----CaKC~k~~~~i~ 108 (196)
......|..|......-+ -|. .|..|+..... |+-|..+.+.++
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 344556777766544332 356 79999998775 999998776544
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.16 E-value=6.3 Score=26.46 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=20.5
Q ss_pred Hh-cChhHHhhccccccccCccccc
Q 029239 84 HN-LCPGCAKEQNVCAKCCSRVDRV 107 (196)
Q Consensus 84 H~-iC~~CA~~~~vCaKC~k~~~~i 107 (196)
|. .|..|+.....|+-|..+...+
T Consensus 45 H~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 45 HLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp CCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CHHHHHHHhhCCCCCccCCceecCc
Confidence 77 8999999999999999876653
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.97 E-value=1.7 Score=30.35 Aligned_cols=62 Identities=18% Similarity=0.532 Sum_probs=37.1
Q ss_pred ccCchhhhHHHHH---HHHHhC--CCCCCCCcccccccccchhhHHh-----HhcChhHHhhc--cccccccCccc
Q 029239 42 ITGVCPRCKDQID---WKRRYG--KYKPLSEPAKCQRCTKRAVRQAY-----HNLCPGCAKEQ--NVCAKCCSRVD 105 (196)
Q Consensus 42 ~~gVCqRC~eiIe---WKvkY~--KYKPLt~p~KC~kC~qktVk~AY-----H~iC~~CA~~~--~vCaKC~k~~~ 105 (196)
....|.+|.+.|. ..+... .|. ..-++|..|...-....| ...|.+|-.++ ..|++|+++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWH--DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEE--TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCCcCcccCCcccCCceEEEECccChh--hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 4567888888773 222211 122 245677777554332233 45799998875 68999997643
No 8
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.60 E-value=75 Score=21.54 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhchhhhhhhHHHHHhhhcccccCccccccCCccCccchHHHhhhcccc
Q 029239 117 AEQKMLEAALKNARERDRRILLRAVNLKIQQKIQPTKIKLGNYFLPHHLRNMLQKAEVT 175 (196)
Q Consensus 117 ~eq~ele~~lk~l~ER~RRt~lR~~~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 175 (196)
+....+.++|..|++++|.-|+-.. |...|..|.++..+++
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~------------------~~g~s~~eIA~~lgis 66 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSY------------------YRGWSTAQIATDLGIA 66 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH------------------TSCCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HcCCCHHHHHHHHCcC
Confidence 3445788899999999999986533 2234667777777765
No 9
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=38.72 E-value=11 Score=26.00 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=29.3
Q ss_pred cccccccccchhhH----HhHh-cChhHHhhccccccccCcccccc
Q 029239 68 PAKCQRCTKRAVRQ----AYHN-LCPGCAKEQNVCAKCCSRVDRVI 108 (196)
Q Consensus 68 p~KC~kC~qktVk~----AYH~-iC~~CA~~~~vCaKC~k~~~~i~ 108 (196)
...|..|......- --|. .|..|+.....|+-|..+...++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeE
Confidence 34566665544332 2366 89999999999999998877643
No 10
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=38.39 E-value=11 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=21.0
Q ss_pred hHh-cChhHHhhccccccccCccccc
Q 029239 83 YHN-LCPGCAKEQNVCAKCCSRVDRV 107 (196)
Q Consensus 83 YH~-iC~~CA~~~~vCaKC~k~~~~i 107 (196)
-|. .|..|+.....|+-|..+...+
T Consensus 43 gH~~~C~~C~~~~~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 43 GHLVTCKQCAEAVDKCPMCYTVITFK 68 (74)
T ss_dssp CCBCCCHHHHTTCSBCTTTCCBCSEE
T ss_pred CChhHHHHhhhcCccCCCcCcCccCc
Confidence 477 9999999999999999876543
No 11
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=37.09 E-value=8.6 Score=32.56 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.5
Q ss_pred hHhcChhHHh------------------hc-----cccccccCccc
Q 029239 83 YHNLCPGCAK------------------EQ-----NVCAKCCSRVD 105 (196)
Q Consensus 83 YH~iC~~CA~------------------~~-----~vCaKC~k~~~ 105 (196)
|+..|.+|+. +. ..|+-|+.+..
T Consensus 103 l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 103 TRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp ECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred cCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 8888999975 34 68999998766
No 12
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=36.86 E-value=7.9 Score=29.55 Aligned_cols=26 Identities=31% Similarity=0.715 Sum_probs=21.6
Q ss_pred hHhcChhHHhh-----ccccccccCcccccc
Q 029239 83 YHNLCPGCAKE-----QNVCAKCCSRVDRVI 108 (196)
Q Consensus 83 YH~iC~~CA~~-----~~vCaKC~k~~~~i~ 108 (196)
+|+.|-+||.. .+.|+.|..+...|.
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 79999999954 579999998877654
No 13
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=34.35 E-value=8.8 Score=28.07 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.9
Q ss_pred Ccccccccccchhh
Q 029239 67 EPAKCQRCTKRAVR 80 (196)
Q Consensus 67 ~p~KC~kC~qktVk 80 (196)
.|..|.+|.|++|.
T Consensus 4 kg~~C~kCEq~~vn 17 (77)
T 2l7x_A 4 KPQTCTICETTPVN 17 (77)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred CCceeeeecccccc
Confidence 46789999999986
No 14
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=33.18 E-value=15 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=20.0
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccCccccccC
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
-.+|..|+..|. ..+|+.||.+....-|
T Consensus 6 mr~C~~CgvYTL--------------k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 6 MKKCPKCGLYTL--------------KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CEECTTTCCEES--------------SSBCSSSCSBCBCCCC
T ss_pred ceeCCCCCCEec--------------cccCcCCCCcCCCCCC
Confidence 467888876665 5678999987666544
No 15
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.21 E-value=7.4 Score=27.09 Aligned_cols=24 Identities=38% Similarity=1.055 Sum_probs=15.7
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccC
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS 102 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k 102 (196)
.-.|-.|+.+ ||| .....||.||-
T Consensus 17 H~~CrRCG~~----syH-------~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEK----SYH-------TKKKVCSSCGF 40 (57)
T ss_dssp EEECTTTCSE----EEE-------TTTTEETTTCT
T ss_pred cccccccCCh----hhh-------ccccccccccC
Confidence 3455555543 566 35789999997
No 16
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=30.21 E-value=12 Score=28.54 Aligned_cols=28 Identities=36% Similarity=0.866 Sum_probs=19.7
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccCcccc
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDR 106 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~ 106 (196)
...|..|+.. +||. +...|++||-+...
T Consensus 16 H~lCrRCG~~----sfH~-------qK~~CgkCGYpa~k 43 (97)
T 2zkr_2 16 HTLCRRCGSK----AYHL-------QKSTCGKCGYPAKR 43 (97)
T ss_dssp EECCTTTCSS----CEET-------TSCCBTTTCTTTSS
T ss_pred CCcCCCCCCc----cCcC-------ccccCcccCCchHh
Confidence 4567777765 5563 67899999976544
No 17
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.75 E-value=6.7 Score=30.32 Aligned_cols=21 Identities=38% Similarity=1.018 Sum_probs=15.6
Q ss_pred HhcChhHHhhcc------ccccccCcc
Q 029239 84 HNLCPGCAKEQN------VCAKCCSRV 104 (196)
Q Consensus 84 H~iC~~CA~~~~------vCaKC~k~~ 104 (196)
.-.|..|...+. .|+.||.+.
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 445888887665 799999763
No 18
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=28.17 E-value=23 Score=25.54 Aligned_cols=56 Identities=25% Similarity=0.550 Sum_probs=38.7
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccch-------hhHHhHhcChhHHhhcc----ccccccC
Q 029239 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRA-------VRQAYHNLCPGCAKEQN----VCAKCCS 102 (196)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qkt-------Vk~AYH~iC~~CA~~~~----vCaKC~k 102 (196)
-|.-|+...+-. +. .|........|..|+.-. ...|||..|..|=.+.. -|+.|-.
T Consensus 35 ~C~~CH~~~~~~-~~-~~~~~~~~~~C~~CH~~~~~~~~~~~~~a~H~~C~~CH~~~~~gp~~C~~CH~ 101 (103)
T 3cao_A 35 SCNACHHVWVNG-VL-AEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQAKGPVMCGECHV 101 (103)
T ss_dssp CGGGTSCCEETT-EE-CSSCCCTTSCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHHTCSCCSHHHHSC
T ss_pred chhhhCCCCCCC-cc-ccccCCCCCchhhhcCccccccccchhhhccChHHHHhHHhccCCCccccccC
Confidence 399999865321 11 345667778999998653 34899999999987754 5666643
No 19
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=28.13 E-value=10 Score=33.55 Aligned_cols=41 Identities=22% Similarity=0.576 Sum_probs=29.8
Q ss_pred cccccccccchhhH----HhHh-cChhHHhhccccccccCcccccc
Q 029239 68 PAKCQRCTKRAVRQ----AYHN-LCPGCAKEQNVCAKCCSRVDRVI 108 (196)
Q Consensus 68 p~KC~kC~qktVk~----AYH~-iC~~CA~~~~vCaKC~k~~~~i~ 108 (196)
...|..|......- ==|. .|..|+.....|+-|..+...++
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEE
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeE
Confidence 45677776654322 2377 99999999999999998766543
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=28.11 E-value=59 Score=23.98 Aligned_cols=22 Identities=27% Similarity=0.774 Sum_probs=16.8
Q ss_pred HhcChhHHhh----ccccccccCccc
Q 029239 84 HNLCPGCAKE----QNVCAKCCSRVD 105 (196)
Q Consensus 84 H~iC~~CA~~----~~vCaKC~k~~~ 105 (196)
|+.|..|... ...|+-|.++..
T Consensus 73 H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 73 HSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp CEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 7788888764 467999987643
No 21
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.35 E-value=23 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.836 Sum_probs=16.6
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccC
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS 102 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k 102 (196)
.-.|-.|+.+ ||| .....||.||-
T Consensus 17 H~lCrRCG~~----syH-------~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGRV----SYN-------VKKGYCAACGF 40 (62)
T ss_dssp CCBCSSSCSB----CEE-------TTTTEETTTCT
T ss_pred eeeecccCcc----hhc-------cccccccccCC
Confidence 4456666543 666 46789999997
No 22
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.93 E-value=14 Score=28.79 Aligned_cols=35 Identities=26% Similarity=0.675 Sum_probs=24.3
Q ss_pred Ccccccccccch-hhHHhHhcChhHHhhccccccccCc
Q 029239 67 EPAKCQRCTKRA-VRQAYHNLCPGCAKEQNVCAKCCSR 103 (196)
Q Consensus 67 ~p~KC~kC~qkt-Vk~AYH~iC~~CA~~~~vCaKC~k~ 103 (196)
....|..|++.- ...+-.++|..|. ..||++|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~--~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCK--KNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTC--CEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCC--cccccccCCc
Confidence 457788887655 2334456888884 6899999863
No 23
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.34 E-value=34 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=18.1
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccCccccccC
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
-.+|..|+..|. ..+|+.||.+....-|
T Consensus 5 mr~C~~Cg~YTL--------------k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 5 IRKCPKCGRYTL--------------KETCPVCGEKTKVAHP 32 (60)
T ss_dssp CEECTTTCCEES--------------SSBCTTTCSBCEESSC
T ss_pred ceECCCCCCEEc--------------cccCcCCCCccCCCCC
Confidence 356777766554 3578889877665444
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=22.90 E-value=41 Score=25.46 Aligned_cols=40 Identities=25% Similarity=0.840 Sum_probs=26.7
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHhHhcChhHHhh-----ccccccccCcc
Q 029239 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKE-----QNVCAKCCSRV 104 (196)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~-----~~vCaKC~k~~ 104 (196)
.|.-|.+.+. .|.....|+ |+.|..|... ...|+-|..+.
T Consensus 56 ~C~IC~~~~~------------~p~~~~~Cg--------H~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLK------------NTMTTKECL--------HRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCS------------SEEEETTTC--------CEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccChHhh------------CcCEeCCCC--------ChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 5888876642 244444554 7788888765 45699999764
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.51 E-value=36 Score=23.95 Aligned_cols=22 Identities=27% Similarity=0.733 Sum_probs=16.9
Q ss_pred HhcChhHHhhc----cccccccCccc
Q 029239 84 HNLCPGCAKEQ----NVCAKCCSRVD 105 (196)
Q Consensus 84 H~iC~~CA~~~----~vCaKC~k~~~ 105 (196)
|+.|..|.... ..|+-|..+..
T Consensus 36 H~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 36 HSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp CEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred ChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 77888887654 68999987654
No 26
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.36 E-value=18 Score=28.00 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=22.9
Q ss_pred hCCCCCCCCcccccccc-cchhhHHhHhcChhHHhh
Q 029239 59 YGKYKPLSEPAKCQRCT-KRAVRQAYHNLCPGCAKE 93 (196)
Q Consensus 59 Y~KYKPLt~p~KC~kC~-qktVk~AYH~iC~~CA~~ 93 (196)
||+| ..+|+.|+ ...|..||. |..|..-
T Consensus 53 ~G~~-----~~rCIiCg~~~g~~dAYY--C~eC~~l 81 (109)
T 2k0a_A 53 FGKQ-----AKNCIICNLNVGVNDAFY--CWECCRL 81 (109)
T ss_dssp TSST-----TSBCTTTSSSBCCEECEE--CHHHHHH
T ss_pred CCCc-----CCceEEcCCCCCccccee--hHhhhhh
Confidence 7766 57899999 889999997 8888743
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=22.27 E-value=71 Score=22.27 Aligned_cols=42 Identities=19% Similarity=0.621 Sum_probs=27.2
Q ss_pred CchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHhHhcChhHHhhc-----cccccccCccc
Q 029239 44 GVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQ-----NVCAKCCSRVD 105 (196)
Q Consensus 44 gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~-----~vCaKC~k~~~ 105 (196)
..|.-|.+.+. .|..|..|+ |+.|..|.... ..|+.|..+..
T Consensus 23 ~~C~IC~~~~~------------~p~~~~~Cg--------H~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR------------DARLCPHCS--------KLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS------------SEEECTTTC--------CEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc------------CccccCCCC--------ChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45777766542 355555564 67888887643 58999987643
No 28
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.62 E-value=19 Score=28.64 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=29.7
Q ss_pred HHHHHHHH-hCCCCCCCCcccccccccc-hhhHHhHhcChhHHhhccccccccC
Q 029239 51 DQIDWKRR-YGKYKPLSEPAKCQRCTKR-AVRQAYHNLCPGCAKEQNVCAKCCS 102 (196)
Q Consensus 51 eiIeWKvk-Y~KYKPLt~p~KC~kC~qk-tVk~AYH~iC~~CA~~~~vCaKC~k 102 (196)
+.+.||.. .++=.+. ....|..|++. ....+=-.+|.+|. ..||++|+.
T Consensus 51 ~~~~~k~~~~~~~~~~-~~~~C~~C~~~fg~l~~~g~~C~~C~--~~VC~~C~~ 101 (153)
T 2zet_C 51 QKESSKRELLSDTAHL-NETHCARCLQPYRLLLNSRRQCLECS--LFVCKSCSH 101 (153)
T ss_dssp HHHHHHHHHHTTSTTG-GGTBCTTTCCBGGGCSSCCEECTTTC--CEECGGGEE
T ss_pred HHHHHHhhhhcccccC-CCccchhhcCccccccCCCCcCCCCC--chhhccccc
Confidence 34566652 2321122 47889999875 22223345899985 689999993
No 29
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.58 E-value=58 Score=23.98 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhchhhhhhhH-HHHHhhhcccccCccccccCCccCccchHHHhhhccccchhhhHHHHHHHH
Q 029239 118 EQKMLEAALKNARERDRRIL-LRAVNLKIQQKIQPTKIKLGNYFLPHHLRNMLQKAEVTKTITMVITWIKSM 188 (196)
Q Consensus 118 eq~ele~~lk~l~ER~RRt~-lR~~~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (196)
....+.++|..|++++|.-| |++++ ..|.+|.++..+++ +.-|-.++...
T Consensus 130 ~~~~l~~~l~~L~~~~r~vl~l~~~~-------------------g~s~~EIA~~lgis--~~tV~~~l~ra 180 (194)
T 1or7_A 130 LRQIVFRTIESLPEDLRMAITLRELD-------------------GLSYEEIAAIMDCP--VGTVRSRIFRA 180 (194)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTT-------------------CCCHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHhHHHHHc-------------------CCCHHHHHHHHCCC--HHHHHHHHHHH
Confidence 44567899999999999998 45543 24666777776655 33444444433
No 30
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=21.22 E-value=19 Score=27.26 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=11.7
Q ss_pred hhccccccccCccccc
Q 029239 92 KEQNVCAKCCSRVDRV 107 (196)
Q Consensus 92 ~~~~vCaKC~k~~~~i 107 (196)
.+...||.||-|...+
T Consensus 29 ~qK~~Ca~CGyps~r~ 44 (94)
T 3iz5_l 29 LQKSTCSSCGYPAARI 44 (94)
T ss_dssp GGGTEETTTCSSCSSC
T ss_pred cccccccccCCchhhc
Confidence 3568999999865443
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.14 E-value=48 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=16.4
Q ss_pred HhcChhHHhhc-------cccccccCccc
Q 029239 84 HNLCPGCAKEQ-------NVCAKCCSRVD 105 (196)
Q Consensus 84 H~iC~~CA~~~-------~vCaKC~k~~~ 105 (196)
|+.|..|.... ..|+-|..+..
T Consensus 41 H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 41 HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 77899997653 26999987654
No 32
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=21.14 E-value=28 Score=22.92 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=16.5
Q ss_pred cccccccchhhHHhH----hcChhHHhhccccc
Q 029239 70 KCQRCTKRAVRQAYH----NLCPGCAKEQNVCA 98 (196)
Q Consensus 70 KC~kC~qktVk~AYH----~iC~~CA~~~~vCa 98 (196)
-|..|..+.|+=.-. ..|..|.....-|.
T Consensus 5 AC~~Cr~rK~kCd~~~~~~~~C~~C~~~~~~C~ 37 (72)
T 2er8_A 5 ACVECRQQKSKCDAHERAPEPCTKCAKKNVPCI 37 (72)
T ss_dssp CCHHHHHTTCCCCSGGGTTSCCHHHHHTTCCCC
T ss_pred hhHHHHhcccCCCCCCCCCCCCcccccCCCcCC
Confidence 355555555553333 56777777665543
No 33
>1gyo_A Cytochrome C3, A dimeric class III C-type cytochrome; electron transport, DI-tetraheme, AB initio, electron transfer; HET: HEC; 1.2A {Desulfovibrio gigas} SCOP: a.138.1.1
Probab=20.67 E-value=52 Score=24.18 Aligned_cols=49 Identities=27% Similarity=0.682 Sum_probs=34.4
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccchh--------hHHhHh----cChhHHhhcc---------cc-ccccC
Q 029239 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAV--------RQAYHN----LCPGCAKEQN---------VC-AKCCS 102 (196)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktV--------k~AYH~----iC~~CA~~~~---------vC-aKC~k 102 (196)
-|.-|+.. +..-..+..|..|+...- ..|||. .|..|=.+.. -| +.|-.
T Consensus 35 ~C~~CHh~---------~~~~~~~~~C~~CH~~~~~~~~~~~~~~a~H~~~~~~C~~CH~~~~~~~~~~gp~~C~~~CH~ 105 (109)
T 1gyo_A 35 SCVSCHHM---------FDGCGDFQKCADCHIDRDDRSYERGFYKAWHSESEISCRGCHKAMKAKNEQTGPIGCLQGCHE 105 (109)
T ss_dssp CHHHHSTT---------CCSSBCCCCGGGTCCCCSCSCCTTSHHHHHSSSSTTSHHHHHHHHHHTTCCCCCCSTTSSTTC
T ss_pred ChhhcCCC---------CCCCCCCcchhhhcCCccccccchhhHHhhhcccCCchhhhchhhhhccccCCCCccCcccCC
Confidence 49999953 112245778999987544 589998 9999987644 47 77754
No 34
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=20.22 E-value=18 Score=27.41 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=11.1
Q ss_pred hhccccccccCcccc
Q 029239 92 KEQNVCAKCCSRVDR 106 (196)
Q Consensus 92 ~~~~vCaKC~k~~~~ 106 (196)
.+...||.||-|...
T Consensus 29 ~qK~~Ca~CGyps~r 43 (94)
T 4a18_A 29 KQKLRCAACGYPDAK 43 (94)
T ss_dssp TTTTEESSSCGGGSS
T ss_pred hccccccccCCcHHH
Confidence 356799999976444
Done!