Query 029239
Match_columns 196
No_of_seqs 96 out of 98
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029239.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029239hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cy3a_ a.138.1.1 (A:) Cytochr 60.0 1.2 8.5E-05 31.4 0.7 48 41-94 38-99 (118)
2 d1v5na_ g.49.1.3 (A:) Pdi-like 44.7 1.5 0.00011 30.4 -0.9 38 68-109 47-84 (89)
3 d2apob1 g.41.16.1 (B:403-457) 34.3 11 0.00077 24.4 2.1 27 69-109 5-31 (55)
4 d1u5sb2 g.39.1.3 (B:103-137) P 32.6 5.9 0.00043 23.7 0.6 9 96-104 2-10 (35)
5 d2ey4e1 g.41.16.1 (E:4-55) Rib 29.7 6.4 0.00047 25.3 0.4 27 69-109 3-29 (52)
6 d2cora2 g.39.1.3 (A:8-42) Pinc 28.5 2.4 0.00017 25.5 -1.8 12 43-54 8-19 (35)
7 d2jnea1 g.41.18.1 (A:1-71) Hyp 28.5 0.96 7E-05 31.1 -4.1 47 43-101 2-48 (71)
8 d3caoa_ a.138.1.1 (A:) Cytochr 28.5 11 0.00083 25.7 1.7 47 46-94 36-89 (103)
9 d1ibia2 g.39.1.3 (A:145-175) C 26.4 7.4 0.00054 22.6 0.2 11 96-106 2-12 (31)
10 d1x6ha1 g.37.1.1 (A:44-80) Tra 25.3 8.5 0.00062 23.0 0.4 10 95-104 5-14 (37)
11 d1jm7b_ g.44.1.1 (B:) bard1 RI 25.2 62 0.0045 20.9 5.1 23 83-105 42-66 (97)
12 d1vqo11 g.41.8.2 (1:1-56) Ribo 23.9 7.1 0.00052 25.5 -0.2 14 92-105 29-42 (56)
13 d1or7a1 a.4.13.2 (A:120-187) S 22.1 40 0.0029 20.5 3.3 26 116-141 6-31 (68)
14 d1zbdb_ g.50.1.1 (B:) Effector 21.9 9.5 0.00069 26.8 0.2 37 64-102 44-81 (124)
15 d2cu8a1 g.39.1.3 (A:8-37) Cyst 21.3 13 0.00095 21.4 0.6 12 95-106 3-14 (30)
16 d1nj1a2 d.68.5.1 (A:411-481) C 20.7 6.8 0.00049 25.7 -0.9 20 64-83 47-66 (71)
No 1
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=60.03 E-value=1.2 Score=31.42 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=31.9
Q ss_pred CccCc-hhhhHHHHHHHHHhCCCCCCCCccccccccc-------------chhhHHhHhcChhHHhhc
Q 029239 41 EITGV-CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------------RAVRQAYHNLCPGCAKEQ 94 (196)
Q Consensus 41 ~~~gV-CqRC~eiIeWKvkY~KYKPLt~p~KC~kC~q-------------ktVk~AYH~iC~~CA~~~ 94 (196)
.+.+| |.-|+..++ ......+...|..|+. .....|||..|..|-.+.
T Consensus 38 ~H~~v~C~~CHh~~~------~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~a~h~~C~~CH~~~ 99 (118)
T d2cy3a_ 38 KHATVECVQCHHTLE------ADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKAL 99 (118)
T ss_dssp GGTTSCHHHHSTTTT------TTTTCCCCTTSTTSSCCCCCCCSTTTTCTTSHHHHHHHHHHHHHHHH
T ss_pred hhCCCCccccccchh------hcccCCccccccCCCcccccccCCcchhhhhhhhhhhhHHHHHHHHH
Confidence 34455 999997652 2222334556888984 335679999999998764
No 2
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.65 E-value=1.5 Score=30.44 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=29.0
Q ss_pred cccccccccchhhHHhHhcChhHHhhccccccccCccccccC
Q 029239 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
+.+|..|....-.+.|+ |..| .+.+...|...++.+..
T Consensus 47 ~~~C~~C~~~~~g~~Y~--C~~C--~f~LH~~CA~~P~~~~~ 84 (89)
T d1v5na_ 47 VYTCDKCEEEGTIWSYH--CDEC--DFDLHAKCALNEDTKES 84 (89)
T ss_dssp SCCCTTTSCCCCSCEEE--CTTT--CCCCCHHHHHCSSCSSC
T ss_pred CCEeCCCCCCcCCcEeE--eccC--CCEecHHHcCCCcccCC
Confidence 56899999887778886 8998 57788888766655443
No 3
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.28 E-value=11 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=19.1
Q ss_pred ccccccccchhhHHhHhcChhHHhhccccccccCccccccC
Q 029239 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 69 ~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
.+|..|+..|. ..+|+.||.+.....|
T Consensus 5 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~P 31 (55)
T d2apob1 5 KKCPKCGLYTL--------------KEICPKCGEKTVIPKP 31 (55)
T ss_dssp EECTTTCCEES--------------SSBCSSSCSBCBCCCC
T ss_pred eeCCcccceec--------------cccCcCCCCccCccCC
Confidence 57778877554 3678999987766555
No 4
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.60 E-value=5.9 Score=23.65 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.6
Q ss_pred ccccccCcc
Q 029239 96 VCAKCCSRV 104 (196)
Q Consensus 96 vCaKC~k~~ 104 (196)
+||+|.+|-
T Consensus 2 vCA~CekPF 10 (35)
T d1u5sb2 2 VCAKCEKPF 10 (35)
T ss_dssp BCTTTCCBC
T ss_pred cccccCCcc
Confidence 799999874
No 5
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=29.72 E-value=6.4 Score=25.25 Aligned_cols=27 Identities=22% Similarity=0.660 Sum_probs=18.2
Q ss_pred ccccccccchhhHHhHhcChhHHhhccccccccCccccccC
Q 029239 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (196)
Q Consensus 69 ~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~~~i~~ 109 (196)
.+|.+|+..|. ..+|+.||.......|
T Consensus 3 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~P 29 (52)
T d2ey4e1 3 RKCPKCGRYTL--------------KEVCPVCGEKTKVAHP 29 (52)
T ss_dssp EECTTTCCEES--------------SSBCTTTCCBCEESSC
T ss_pred ccCCcccceec--------------cccCcCCCCcccccCC
Confidence 46777776543 3578889877666555
No 6
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.54 E-value=2.4 Score=25.55 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=10.0
Q ss_pred cCchhhhHHHHH
Q 029239 43 TGVCPRCKDQID 54 (196)
Q Consensus 43 ~gVCqRC~eiIe 54 (196)
-.||+.|+.+|+
T Consensus 8 k~vC~KCh~iId 19 (35)
T d2cora2 8 KYICQKCHAIID 19 (35)
T ss_dssp CCBCTTTCCBCC
T ss_pred hHHHHHHHhhhh
Confidence 358999999994
No 7
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=28.52 E-value=0.96 Score=31.10 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=33.7
Q ss_pred cCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHhHhcChhHHhhcccccccc
Q 029239 43 TGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101 (196)
Q Consensus 43 ~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~ 101 (196)
+..|+.|..-|+|+ ....-|..|.+.-.+.| .|++|..++.+=--||
T Consensus 2 ~~~CP~C~~eL~~~---------~~~~~C~~C~~~~~~~a---~CPdC~~~Le~LkACG 48 (71)
T d2jnea1 2 ELHCPQCQHVLDQD---------NGHARCRSCGEFIEMKA---LCPDCHQPLQVLKACG 48 (71)
T ss_dssp CCBCSSSCSBEEEE---------TTEEEETTTCCEEEEEE---ECTTTCSBCEEEEETT
T ss_pred CCcCCCccCccccc---------CCCEehhhhhhhheeEE---eCCccccHHHHHHhcc
Confidence 45699999999997 24567888876655544 5888888776655554
No 8
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus [TaxId: 873]}
Probab=28.45 E-value=11 Score=25.74 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCccccccccc-------chhhHHhHhcChhHHhhc
Q 029239 46 CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------RAVRQAYHNLCPGCAKEQ 94 (196)
Q Consensus 46 CqRC~eiIeWKvkY~KYKPLt~p~KC~kC~q-------ktVk~AYH~iC~~CA~~~ 94 (196)
|.-|+-.++ -...-|.-.+....|..|+. .....|||..|..|=.+.
T Consensus 36 C~~CHh~~~--~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~A~H~~C~~CH~~~ 89 (103)
T d3caoa_ 36 CNACHHVWV--NGVLAEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQ 89 (103)
T ss_dssp GGGTSCCEE--TTEECSSCCCTTSCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCc--CccccccccCCCCccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 999997543 22233444445556999984 347789999999997664
No 9
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=26.35 E-value=7.4 Score=22.56 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=9.0
Q ss_pred ccccccCcccc
Q 029239 96 VCAKCCSRVDR 106 (196)
Q Consensus 96 vCaKC~k~~~~ 106 (196)
.||+||++.+.
T Consensus 2 rca~cgk~les 12 (31)
T d1ibia2 2 RCAKCGKSLES 12 (31)
T ss_dssp ECSSSCCEECS
T ss_pred ccccccCcccc
Confidence 49999998764
No 10
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.29 E-value=8.5 Score=23.03 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.8
Q ss_pred cccccccCcc
Q 029239 95 NVCAKCCSRV 104 (196)
Q Consensus 95 ~vCaKC~k~~ 104 (196)
-||+||||.-
T Consensus 5 fvcskcgktf 14 (37)
T d1x6ha1 5 FVCSKCGKTF 14 (37)
T ss_dssp EECSSSCCEE
T ss_pred eeecccccch
Confidence 4899999853
No 11
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.18 E-value=62 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=15.2
Q ss_pred hHhcChhHHhhc--cccccccCccc
Q 029239 83 YHNLCPGCAKEQ--NVCAKCCSRVD 105 (196)
Q Consensus 83 YH~iC~~CA~~~--~vCaKC~k~~~ 105 (196)
-|+.|..|.... .-|+-|..+..
T Consensus 42 gH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (97)
T d1jm7b_ 42 EHIFCSNCVSDCIGTGCPVCYTPAW 66 (97)
T ss_dssp SCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCchhHHHHHHHHhccccccCCcCc
Confidence 477777775542 34999986543
No 12
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=23.85 E-value=7.1 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.4
Q ss_pred hhccccccccCccc
Q 029239 92 KEQNVCAKCCSRVD 105 (196)
Q Consensus 92 ~~~~vCaKC~k~~~ 105 (196)
.....||.||-++.
T Consensus 29 ~qK~~CasCGyg~s 42 (56)
T d1vqo11 29 TKKKVCSSCGFGKS 42 (56)
T ss_dssp TTTTEETTTCTTTC
T ss_pred hccccccccCCCcc
Confidence 35789999997443
No 13
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=22.07 E-value=40 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhchhhhhhhHHHHH
Q 029239 116 EAEQKMLEAALKNARERDRRILLRAV 141 (196)
Q Consensus 116 e~eq~ele~~lk~l~ER~RRt~lR~~ 141 (196)
++....+.++|..|+++.|..|.-.-
T Consensus 6 ~e~~~~l~~~l~~Lp~~~r~v~~l~~ 31 (68)
T d1or7a1 6 EELRQIVFRTIESLPEDLRMAITLRE 31 (68)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556788999999999999986554
No 14
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.91 E-value=9.5 Score=26.83 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=24.7
Q ss_pred CCCCcccccccccchhh-HHhHhcChhHHhhccccccccC
Q 029239 64 PLSEPAKCQRCTKRAVR-QAYHNLCPGCAKEQNVCAKCCS 102 (196)
Q Consensus 64 PLt~p~KC~kC~qktVk-~AYH~iC~~CA~~~~vCaKC~k 102 (196)
+...+..|..|+..-.. ....+.|..|. ..+|++|+.
T Consensus 44 ~~~~~~~C~~C~~~f~~~~~~~~~C~~C~--~~~C~~C~~ 81 (124)
T d1zbdb_ 44 AGDGVNRCILCGEQLGMLGSASVVCEDCK--KNVCTKCGV 81 (124)
T ss_dssp CSCSSSBCSSSCCBCSTTSCCEEECTTTC--CEEETTSEE
T ss_pred hccCCCcCcccCCcccCCCCCCCcCccCC--cccccCCCC
Confidence 44557789999876332 23334799996 568999974
No 15
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.33 E-value=13 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.550 Sum_probs=9.4
Q ss_pred cccccccCcccc
Q 029239 95 NVCAKCCSRVDR 106 (196)
Q Consensus 95 ~vCaKC~k~~~~ 106 (196)
..|++|+++++-
T Consensus 3 ~~CprC~K~VYf 14 (30)
T d2cu8a1 3 SKCPKCDKTVYF 14 (30)
T ss_dssp CBCTTTCCBCCT
T ss_pred CcCCCCCCceee
Confidence 469999998764
No 16
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=20.65 E-value=6.8 Score=25.73 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.7
Q ss_pred CCCCcccccccccchhhHHh
Q 029239 64 PLSEPAKCQRCTKRAVRQAY 83 (196)
Q Consensus 64 PLt~p~KC~kC~qktVk~AY 83 (196)
|+..+++|+.|++.+...+|
T Consensus 47 p~~~~~~Ci~cgk~a~~~v~ 66 (71)
T d1nj1a2 47 QEEGSGTCINCGREAPYRAY 66 (71)
T ss_dssp EECSCCBCTTTCSBCCEEEE
T ss_pred cCCCCCcceecCCccceEEE
Confidence 56678889998887765544
Done!