Query 029240
Match_columns 196
No_of_seqs 109 out of 523
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 2.6E-76 5.6E-81 502.5 19.3 190 6-196 1-190 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 7.6E-77 1.7E-81 486.1 11.5 189 5-196 4-192 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 4.1E-72 8.8E-77 475.3 17.3 188 6-196 1-188 (236)
4 KOG0841 Multifunctional chaper 100.0 2E-67 4.4E-72 440.6 14.6 189 5-196 1-190 (247)
5 TIGR00990 3a0801s09 mitochondr 82.5 21 0.00047 33.9 11.7 43 150-194 483-525 (615)
6 PF13424 TPR_12: Tetratricopep 81.5 2.6 5.5E-05 28.4 3.8 43 150-194 21-63 (78)
7 PF13374 TPR_10: Tetratricopep 81.4 1.6 3.5E-05 25.5 2.4 24 150-173 18-41 (42)
8 PF05010 TACC: Transforming ac 73.9 20 0.00044 30.1 7.7 80 11-110 123-206 (207)
9 COG0233 Frr Ribosome recycling 73.5 13 0.00028 30.9 6.3 73 40-113 105-177 (187)
10 PF04781 DUF627: Protein of un 73.3 7.5 0.00016 29.6 4.5 64 123-191 32-99 (111)
11 PF13174 TPR_6: Tetratricopept 73.1 9 0.0002 21.0 3.9 28 9-36 3-30 (33)
12 PF01765 RRF: Ribosome recycli 70.2 18 0.0004 28.9 6.4 73 40-113 85-157 (165)
13 KOG4759 Ribosome recycling fac 68.1 26 0.00055 30.6 7.2 71 40-113 183-253 (263)
14 TIGR00496 frr ribosome recycli 65.3 22 0.00047 29.0 6.0 73 40-113 94-166 (176)
15 PF07719 TPR_2: Tetratricopept 64.7 21 0.00047 19.6 4.4 27 9-35 4-30 (34)
16 PF13181 TPR_8: Tetratricopept 63.9 20 0.00044 19.9 4.2 28 8-35 3-30 (34)
17 KOG1840 Kinesin light chain [C 62.8 1.4E+02 0.0031 28.4 15.0 167 8-188 201-379 (508)
18 cd00520 RRF Ribosome recycling 62.1 23 0.0005 28.9 5.6 73 40-113 99-171 (179)
19 PRK00083 frr ribosome recyclin 60.9 29 0.00063 28.5 6.0 73 40-113 103-175 (185)
20 PF13176 TPR_7: Tetratricopept 56.7 24 0.00051 20.5 3.6 25 9-33 2-26 (36)
21 PF13432 TPR_16: Tetratricopep 56.2 32 0.00069 22.0 4.6 41 11-55 2-42 (65)
22 PF13428 TPR_14: Tetratricopep 51.1 53 0.0011 19.7 5.2 29 8-36 3-31 (44)
23 PF12862 Apc5: Anaphase-promot 50.8 29 0.00063 24.7 4.0 46 150-196 14-60 (94)
24 cd02683 MIT_1 MIT: domain cont 42.9 63 0.0014 22.6 4.6 28 7-34 7-34 (77)
25 KOG1840 Kinesin light chain [C 42.6 45 0.00097 31.8 4.9 49 130-188 247-295 (508)
26 PF00515 TPR_1: Tetratricopept 40.0 66 0.0014 17.7 4.1 27 9-35 4-30 (34)
27 KOG4507 Uncharacterized conser 38.4 33 0.00071 33.8 3.3 45 124-185 220-264 (886)
28 TIGR03504 FimV_Cterm FimV C-te 34.0 76 0.0017 19.9 3.5 40 10-51 3-42 (44)
29 PF12895 Apc3: Anaphase-promot 33.7 78 0.0017 21.4 3.9 21 11-31 63-83 (84)
30 PF10083 DUF2321: Uncharacteri 33.6 2.6E+02 0.0056 22.6 7.9 34 24-60 83-116 (158)
31 cd05493 Bromo_ALL-1 Bromodomai 33.3 49 0.0011 25.9 3.0 38 96-133 75-119 (131)
32 PF09324 DUF1981: Domain of un 33.3 1.8E+02 0.0038 20.6 6.1 36 41-76 29-68 (86)
33 PRK15179 Vi polysaccharide bio 33.0 5E+02 0.011 25.8 11.9 127 3-164 83-218 (694)
34 cd02656 MIT MIT: domain contai 32.6 1.6E+02 0.0034 19.9 6.2 28 8-35 8-35 (75)
35 PF13431 TPR_17: Tetratricopep 32.2 42 0.00092 19.4 2.0 32 156-196 1-32 (34)
36 smart00028 TPR Tetratricopepti 30.3 75 0.0016 15.4 3.5 27 9-35 4-30 (34)
37 KOG0570 Transcriptional coacti 27.3 3.1E+02 0.0067 23.2 6.9 26 45-70 109-139 (223)
38 PF12083 DUF3560: Domain of un 27.3 75 0.0016 24.7 3.1 28 149-177 21-48 (126)
39 cd02682 MIT_AAA_Arch MIT: doma 26.8 1.2E+02 0.0026 21.4 3.8 27 8-34 8-34 (75)
40 TIGR02795 tol_pal_ybgF tol-pal 26.4 2.2E+02 0.0048 19.5 7.8 60 8-69 4-63 (119)
41 PF14689 SPOB_a: Sensor_kinase 25.8 1.4E+02 0.0031 19.8 4.0 26 10-35 27-52 (62)
42 PRK11447 cellulose synthase su 25.7 7.7E+02 0.017 25.6 13.5 59 8-71 605-663 (1157)
43 PF09548 Spore_III_AB: Stage I 25.7 3.4E+02 0.0074 21.5 8.4 76 11-104 69-146 (170)
44 PF14490 HHH_4: Helix-hairpin- 25.5 1.6E+02 0.0034 21.1 4.4 48 127-186 38-86 (94)
45 cd07589 BAR_DNMBP The Bin/Amph 25.2 3.8E+02 0.0082 21.8 7.9 50 130-179 115-164 (195)
46 cd02678 MIT_VPS4 MIT: domain c 25.0 1.3E+02 0.0029 20.5 3.8 28 7-34 7-34 (75)
47 PF13414 TPR_11: TPR repeat; P 24.7 1.9E+02 0.0042 18.3 7.4 29 7-35 4-32 (69)
48 PF03635 Vps35: Vacuolar prote 24.4 69 0.0015 32.1 3.0 40 150-189 701-741 (762)
49 smart00745 MIT Microtubule Int 24.0 2.3E+02 0.005 19.0 5.9 28 8-35 10-37 (77)
50 PF12569 NARP1: NMDA receptor- 23.8 6.4E+02 0.014 24.0 12.1 52 144-196 156-213 (517)
51 PF14559 TPR_19: Tetratricopep 23.4 2E+02 0.0044 18.1 4.4 52 18-74 3-54 (68)
52 PF12688 TPR_5: Tetratrico pep 22.9 3.4E+02 0.0073 20.5 6.2 61 7-69 39-99 (120)
53 PF00887 ACBP: Acyl CoA bindin 22.9 2.7E+02 0.0059 19.4 5.2 36 20-59 3-38 (87)
54 PF04212 MIT: MIT (microtubule 22.6 1.8E+02 0.004 19.2 4.1 27 8-34 7-33 (69)
55 PF00244 14-3-3: 14-3-3 protei 22.5 3.1E+02 0.0068 23.1 6.3 59 94-165 141-204 (236)
56 cd02681 MIT_calpain7_1 MIT: do 21.3 1.7E+02 0.0038 20.5 3.8 27 8-34 8-34 (76)
57 PLN03088 SGT1, suppressor of 21.2 5.8E+02 0.013 22.6 10.6 59 7-70 37-95 (356)
58 PF09969 DUF2203: Uncharacteri 21.2 3.8E+02 0.0082 20.4 8.3 66 42-107 3-68 (120)
59 PF13371 TPR_9: Tetratricopept 20.8 2.1E+02 0.0045 18.3 4.0 23 13-35 2-24 (73)
60 PF10516 SHNi-TPR: SHNi-TPR; 20.6 1E+02 0.0022 18.7 2.2 36 133-171 3-38 (38)
61 PF02154 FliM: Flagellar motor 20.2 67 0.0015 25.9 1.7 36 39-74 105-140 (192)
62 PF00901 Orbi_VP5: Orbivirus o 20.2 5.4E+02 0.012 24.7 7.8 70 22-95 121-193 (508)
63 PF06160 EzrA: Septation ring 20.2 7.7E+02 0.017 23.6 12.6 129 17-173 414-548 (560)
64 cd02684 MIT_2 MIT: domain cont 20.1 1.9E+02 0.0041 20.0 3.8 28 7-34 7-34 (75)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=2.6e-76 Score=502.53 Aligned_cols=190 Identities=74% Similarity=1.137 Sum_probs=182.5
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHH
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~ 85 (196)
|++++|+|||++||||||||+++||++++..+ +.+||.||||||||||||+||++|+|||+|+++|++++.+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~-~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVD-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 68999999999999999999999999998622 25999999999999999999999999999999999988788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 029240 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (196)
Q Consensus 86 ~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (196)
.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|.+||++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 166 ~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
++|||||||||||+||||||||||+++|++|
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A 190 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRA 190 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999999999999999876
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-77 Score=486.07 Aligned_cols=189 Identities=68% Similarity=1.080 Sum_probs=185.2
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhH
Q 029240 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (196)
Q Consensus 5 ~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~ 84 (196)
.||+.+|+|+|++|||||++|++.||.++.. +++|+.+|||||||||||+||+||+|||++++++|+++++||..++
T Consensus 4 ~rE~svylAkLaeqAERYe~MvenMk~vas~---~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 4 SREDSVYLAKLAEQAERYEEMVENMKLVASS---GQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 5999999999999999999999999999965 3899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHH
Q 029240 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (196)
Q Consensus 85 ~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (196)
.+|++|+++|+.||..||+||+++|++||||.+++.|++|||+|||||||||+|||..|+.++++.+.|+++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 165 ~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
..+||||||||||||||||||||||+|+|++|
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkA 192 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKA 192 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHH
Confidence 99999999999999999999999999999986
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=4.1e-72 Score=475.35 Aligned_cols=188 Identities=66% Similarity=1.069 Sum_probs=179.1
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHH
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~ 85 (196)
|++++|+|||++|||||+||+++||++++. + ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~-~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEM-N--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHT-S--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHcc-C--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 799999999999999999999999999987 3 9999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 029240 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (196)
Q Consensus 86 ~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (196)
.+++|+++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++.+++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 166 ~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
++||||||+||||+||||||||||++++++|
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A 188 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKA 188 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999999999999999876
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-67 Score=440.62 Aligned_cols=189 Identities=71% Similarity=1.084 Sum_probs=183.8
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhH
Q 029240 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (196)
Q Consensus 5 ~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~ 84 (196)
+|+++|++|++++|||||+||+.+||.+++. + .+||.|||||||+|||||||++|+|||+|++|||+++.+|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~-~--~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAEL-D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhccc-c--hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 4899999999999999999999999999985 3 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-ChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHH
Q 029240 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (196)
Q Consensus 85 ~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (196)
..+..||++|+.||..+|++|+.++|.+|+|+++. .+++|||+|||||||||+|||..|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 164 a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
|+..|+|||||||||+||||||||||+|.|++|
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~a 190 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERA 190 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHH
Confidence 999999999999999999999999999999876
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=82.50 E-value=21 Score=33.87 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
.+.|...|++|+++... ..+.++..++ .+|.+..+|+-.++.+
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFI 525 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHH
Confidence 45677888888776542 3333332222 3444444555444443
No 6
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=81.51 E-value=2.6 Score=28.43 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
-++|...|++|+++ .+.+++.||.-.-...|.+..++. +++.+
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~ 63 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYE 63 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHH
Confidence 46789999999999 557898888777777777777654 34433
No 7
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.39 E-value=1.6 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHP 173 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~p 173 (196)
.+.|...+++|+++.++-++|-||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 467899999999999988899998
No 8
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=73.94 E-value=20 Score=30.13 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH----HHhhhhhcccchhhHHH
Q 029240 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS----SIEQKEEGRKNEEHVSL 86 (196)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~----~~eq~~~~~~~~~~~~~ 86 (196)
|+++|..+-.||+-|-.....-+ +..++|-.-+-..++.-+...++.+|.-. |++...
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L----------- 184 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESL----------- 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 67778877788876654443333 23346666666677777777777777642 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 029240 87 VKDYRSKVESELSDVCGSILKLLD 110 (196)
Q Consensus 87 i~~y~~ki~~EL~~iC~eii~lid 110 (196)
+=+.+=..||..||+|+|.-++
T Consensus 185 --eQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 185 --EQKTKENEELTKICDELISKMG 206 (207)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 0112223799999999987543
No 9
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=73.50 E-value=13 Score=30.86 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.---|...-..|-|.|.+.--- +.+.+..++--...++-..+.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998899999885211 1111111111123456677888888888888888888765
No 10
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=73.27 E-value=7.5 Score=29.63 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHhhhcccccchhhhccch-hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH---HHHHHHHhC
Q 029240 123 KVFYLKMKGDYYRYLAEFKVGD-ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNF---SVFYYEILN 191 (196)
Q Consensus 123 kvfy~KmkgDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~---SVF~yEi~~ 191 (196)
-.|-+...|+.|..+|...++. -+....-.|.+||.+|.. |+|..+.-|=..-+- ..||-+.+.
T Consensus 32 ~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-----Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 32 SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-----LSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-----cChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3488999999999999987654 456677889999998875 444444444333344 444444443
No 11
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.07 E-value=9 Score=21.01 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTSS 36 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~~ 36 (196)
+..+|.+..+.|+++++++.++.++...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 5678999999999999999999999753
No 12
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=70.20 E-value=18 Score=28.89 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|++|.|-|.-+...-|...-..|.+.|.+..--.+.- +........-+|-..+.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999864222211 000000013455666777888888888777777643
No 13
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=68.08 E-value=26 Score=30.64 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+.|.|-|.-|+..-+......|.|+|-+..---+...+..+ ..-+|=..+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999886433232221111 13345567788999999999988888765
No 14
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=65.29 E-value=22 Score=29.05 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..---+. .+...+.-..-++-..+.+++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888885211110 0000000012245566777777777777777777654
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.72 E-value=21 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+..+.|+|++.++++++++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.89 E-value=20 Score=19.87 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+..++++..+.|.++.++.++++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567899999999999999999999875
No 17
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=62.81 E-value=1.4e+02 Score=28.42 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcc---CCCCCCCHH-HHHHHHHHHhhhhhhhhHHHHHHH-HHhhhhhcccch-
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSS---TPATELTVE-ERNLLSVAYKNVIGSLRAAWRIIS-SIEQKEEGRKNE- 81 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~---~~~~~Lt~e-ERnLls~ayKn~i~~~R~s~R~l~-~~eq~~~~~~~~- 81 (196)
.+.++|.+..+.|+|+.++...++.+... .+...|-.. -.+-|++.|-+ .+..+.|..++. ++...++..|..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45568899999999999999999887531 111222222 34446666655 345566666664 344444444443
Q ss_pred -hhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHH
Q 029240 82 -EHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTML 155 (196)
Q Consensus 82 -~~~~~i~~-----y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 155 (196)
.....+.+ |+.-=-.|-...|..+++|..+ ++.++.++-.. .+.++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~-----------~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAA-----------QLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--hhccChHHHHH-----------HHHHHHHHHHHhcchhHHHH
Confidence 23333332 4444457889999999999988 34333333221 12333322233334678899
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 029240 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYE 188 (196)
Q Consensus 156 aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yE 188 (196)
-|+.|+++....+++.||.-=|+--|+++.|+-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999988763
No 18
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=62.12 E-value=23 Score=28.86 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|....|...-..|.+.|.+..--.+. .+.....-..-+|-..+.++++..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~-lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDK-IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999888988888888888875211110 0000000012244556667777777777777777654
No 19
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=60.88 E-value=29 Score=28.54 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|....|...-..|.+.|.+..--.+.- +...+.-..-+|-..+.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999998889888888888888853111110 000000012245556677777777777777777654
No 20
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=56.70 E-value=24 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLV 33 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i 33 (196)
+..+|.+..+.|.|+.++++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999999855
No 21
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=56.18 E-value=32 Score=22.00 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 029240 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYK 55 (196)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayK 55 (196)
.+|...-+.|+|++++..+++++.. .+-+.+=+.++..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHH
Confidence 4688889999999999999999975 2335555555555544
No 22
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=51.05 E-value=53 Score=19.73 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSS 36 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~ 36 (196)
-...+|+...+.|++++.....+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999999763
No 23
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.77 E-value=29 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHH-HHHHHHHHHHhCCcccC
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKA 196 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~-LN~SVF~yEi~~~~~~A 196 (196)
-..|.+.....++.+..+..+.++..+..+ ||.+.+++. +|++++|
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A 60 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEA 60 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHH
Confidence 346788888888888877776654445544 778886665 3665544
No 24
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.85 E-value=63 Score=22.62 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
-+++..|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888999999999888877774
No 25
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=42.59 E-value=45 Score=31.80 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=40.0
Q ss_pred hcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 029240 130 KGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYE 188 (196)
Q Consensus 130 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yE 188 (196)
-|.+||-+.+ -..|...|++|+.+-...+.++||-.-...-|.||.||.
T Consensus 247 ~a~~y~~~~k----------~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 247 LALVYRSLGK----------YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHHHHhcc----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 4666665543 356899999999999999999999888888889998864
No 26
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=40.03 E-value=66 Score=17.72 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+..+.|+|++.+.+.+++++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 456888999999999999999999975
No 27
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.38 E-value=33 Score=33.80 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 029240 124 VFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVF 185 (196)
Q Consensus 124 vfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF 185 (196)
-|||+|+|. .-.|..||-.|..++..+..-+--+-||..||-+=|
T Consensus 220 s~YWR~~G~-----------------~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~ 264 (886)
T KOG4507|consen 220 SFYWRIKGE-----------------PYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF 264 (886)
T ss_pred HHHHHHcCC-----------------hhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc
Confidence 588888886 345788999888877654443333445556775544
No 28
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=34.03 E-value=76 Score=19.92 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls 51 (196)
+-+|+..-..|.++.+-+.+.+++... ..+...+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~--~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG--DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Confidence 468999999999999999999999643 2455556666654
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.70 E-value=78 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 029240 11 YLAKLAEQAERYEEMVKFMDS 31 (196)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ 31 (196)
..|+...+.|+|+++++.+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 446666666666666665543
No 30
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.58 E-value=2.6e+02 Score=22.64 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhh
Q 029240 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS 60 (196)
Q Consensus 24 dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~ 60 (196)
..++..+++++.. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~---eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEED---EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHh---hcCCHHHHHHHHhhhHHHhhc
Confidence 4566777788753 799999999999998887743
No 31
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=33.31 E-value=49 Score=25.92 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC-------hhHHHHHhhhccc
Q 029240 96 SELSDVCGSILKLLDSHLVPSATAG-------ESKVFYLKMKGDY 133 (196)
Q Consensus 96 ~EL~~iC~eii~lid~~Lip~~~~~-------eskvfy~KmkgDy 133 (196)
.=+.++|+||+.+|...|.-....+ -.|-||+|.--+-
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 3467889999988888875333222 2467888765443
No 32
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=33.29 E-value=1.8e+02 Score=20.61 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhhhhh
Q 029240 41 ELTVEERNLLSVAYKNVIG----SLRAAWRIISSIEQKEE 76 (196)
Q Consensus 41 ~Lt~eERnLls~ayKn~i~----~~R~s~R~l~~~eq~~~ 76 (196)
.-+.+-|.+...+..++|. ..|++|+++-++-....
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa 68 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAA 68 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 4567888888888888887 66999999977655543
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.00 E-value=5e+02 Score=25.76 Aligned_cols=127 Identities=14% Similarity=0.005 Sum_probs=0.0
Q ss_pred CCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 3 TPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 3 ~~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
|..-+-+.-+|.+..+.|||||.......+++... .-++.+..--++|...++-++....-.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P------------------d~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP------------------DSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC------------------CcHHHHHHHHHHHHHhccHHHHHHHHH
Q ss_pred hH------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHH---HHHhhhcccccchhhhccchhHHHHHHHH
Q 029240 83 HV------SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKV---FYLKMKGDYYRYLAEFKVGDERKAAAENT 153 (196)
Q Consensus 83 ~~------~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskv---fy~KmkgDyyRYlaE~~~~~~~~~~~~~a 153 (196)
+. +.-..+..-+.-.=.--+.+.+.+.++.|-|...+++..+ --+|-.|+ .+.|
T Consensus 145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-----------------~~~A 207 (694)
T PRK15179 145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-----------------LWRA 207 (694)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHH
Q ss_pred HHHHHHHHHHH
Q 029240 154 MLSYKAAQDIA 164 (196)
Q Consensus 154 ~~aY~~A~~~a 164 (196)
..+|+.|.+..
T Consensus 208 ~~~~~~a~~~~ 218 (694)
T PRK15179 208 RDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhh
No 34
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.58 E-value=1.6e+02 Score=19.88 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+++-.|--++..|+|++++.+..+.++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556677788889999999999888853
No 35
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=32.20 E-value=42 Score=19.41 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 156 aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
+|++|++ +.|.|| ..-.|++++|+ ..++.++|
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~-~~g~~~~A 32 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYL-NQGDYEEA 32 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHH-HCcCHHhh
Confidence 3666664 556666 34567777766 34666654
No 36
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=30.32 E-value=75 Score=15.45 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..+|.+..+.++|++.+.+..+.+..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 456788888999999999999888754
No 37
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=27.27 E-value=3.1e+02 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhhhh-----hHHHHHHHH
Q 029240 45 EERNLLSVAYKNVIGSL-----RAAWRIISS 70 (196)
Q Consensus 45 eERnLls~ayKn~i~~~-----R~s~R~l~~ 70 (196)
|+-..+-+-..++|+.+ |.|+++|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34456667788888876 577888764
No 38
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=27.27 E-value=75 Score=24.68 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q 029240 149 AAENTMLSYKAAQDIALTDLAPTHPIRLG 177 (196)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~l~p~~pirLg 177 (196)
....|..+|+.+-+++. .+|+.-||-.|
T Consensus 21 a~~~s~~~~~~a~~~~~-~ip~GQPIlVG 48 (126)
T PF12083_consen 21 AAARSEAAYEAANRMAE-AIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCCCCeecc
Confidence 56678899999999887 79999999887
No 39
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.85 E-value=1.2e+02 Score=21.39 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
.++-+|--+++.|||++++.+=+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677788888999998888777764
No 40
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=26.36 E-value=2.2e+02 Score=19.53 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
.+.-.+....+.|+|+++++.+.+++... ++..++.+-+..++.+|-. .+....+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~ 63 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYA-QGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 34555666666777777777777776542 1234444445555554432 222333444444
No 41
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.84 E-value=1.4e+02 Score=19.78 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+....-.=|.|+|+++.++++.++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556789999999999999853
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=25.70 E-value=7.7e+02 Score=25.62 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~ 71 (196)
-++.+|.+..+.|++++++.+++++++.. |+ +.+=+.-+..+|... +....+...+..+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~-~~~a~~~la~~~~~~-g~~~eA~~~l~~l 663 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE---PG-NADARLGLIEVDIAQ-GDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 34678888888899999999999988752 33 445555555555443 5555666666543
No 43
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.68 E-value=3.4e+02 Score=21.53 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCHH--HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHH
Q 029240 11 YLAKLAEQAERYE--EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVK 88 (196)
Q Consensus 11 ~~Aklaeq~ery~--dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~ 88 (196)
+..+++++.++-+ +..+..+..++.......|+.+|+.+|...-++.=.. +-+.+.+.++
T Consensus 69 ~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~------------------D~~~Q~k~i~ 130 (170)
T PF09548_consen 69 FFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYS------------------DREMQEKHIE 130 (170)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccC------------------CHHHHHHHHH
Confidence 4555555554444 4445555555432112568888888777665554221 1223556666
Q ss_pred HHHHHHHHHHHHHHHH
Q 029240 89 DYRSKVESELSDVCGS 104 (196)
Q Consensus 89 ~y~~ki~~EL~~iC~e 104 (196)
-+.+.++.++...-.+
T Consensus 131 l~~~~L~~~~~~a~~~ 146 (170)
T PF09548_consen 131 LYLEQLEQQLEEAREE 146 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777666655444
No 44
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=25.47 E-value=1.6e+02 Score=21.08 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=29.8
Q ss_pred HhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHH
Q 029240 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFY 186 (196)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~l~p~~pirLgL~LN~SVF~ 186 (196)
.+++.|=|+-+.++..- .++.|-.+|.+ .+++.||-|+.=++-+.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 45556666666655321 15666677765 69999999999999888765
No 45
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=25.23 E-value=3.8e+02 Score=21.85 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=35.2
Q ss_pred hcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 029240 130 KGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLA 179 (196)
Q Consensus 130 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~ 179 (196)
+-||=||...+.....-.+-.+.|.+.|...-+..+++||+..-.+.++.
T Consensus 115 llDYdr~~~~~~k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l 164 (195)
T cd07589 115 LLDYERYKEKKERGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLL 164 (195)
T ss_pred hccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46888887776543322334677888898888888889998877776653
No 46
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.97 E-value=1.3e+02 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
..++..|--.+++|+|++++.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777778899999999999988885
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=24.67 E-value=1.9e+02 Score=18.28 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+.+..+|.++.+.|+|++++.+.++.++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34567899999999999999999999975
No 48
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=24.37 E-value=69 Score=32.05 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHH-HHHHHHHHHHH
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGL-ALNFSVFYYEI 189 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL-~LN~SVF~yEi 189 (196)
-++.++|-|+|+.+|...+.|.-.+-|=+ +||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 56789999999999998888555555544 89999999964
No 49
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.01 E-value=2.3e+02 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+++..|--.+++|+|++++.+.+..++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677788889999998888887753
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.80 E-value=6.4e+02 Score=24.04 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 144 ~~~~~~~~~a~~aY~~A~~~a~~~l~------p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
..+..++..-...|...++... .++ +-.|.-+--++.|---+|+.+++.++|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4556666666666666554332 233 235777777888888889999987765
No 51
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=23.40 E-value=2e+02 Score=18.07 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=27.7
Q ss_pred HhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 029240 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK 74 (196)
Q Consensus 18 q~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~ 74 (196)
+.|+|++++...++++... +=+.+=+-.+..+|-.. |..-.|-.++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 3566666666666666542 22555555555555443 5555555555544444
No 52
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=22.88 E-value=3.4e+02 Score=20.47 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
.-+|.++...-..||+++.+..+.+.+... |+.+++..=+-++..+.-| .+..+.+++.+-
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~-~gr~~eAl~~~l 99 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYN-LGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 456788888889999999999999988653 2456777666666655444 455555666553
No 53
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=22.88 E-value=2.7e+02 Score=19.44 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhh
Q 029240 20 ERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIG 59 (196)
Q Consensus 20 ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~ 59 (196)
++|+.++.+++..-. +..++.+++-.|-.-||-...
T Consensus 3 ~~F~~A~~~v~~~~~----~~~~~~~~~L~LYalyKQAt~ 38 (87)
T PF00887_consen 3 EEFEAAVEFVSNLPK----KSQLSNDDKLELYALYKQATH 38 (87)
T ss_dssp HHHHHHHHHHHHSSS----CSTS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccc----cCCCCHHHHHHHHHHHHHHHh
Confidence 356777777776432 147999999999888888773
No 54
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.59 E-value=1.8e+02 Score=19.19 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
.++..|--+++.|+|++++++=++.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788888889999999888777664
No 55
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.48 E-value=3.1e+02 Score=23.08 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCC-----ChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 029240 94 VESELSDVCGSILKLLDSHLVPSATA-----GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (196)
Q Consensus 94 i~~EL~~iC~eii~lid~~Lip~~~~-----~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (196)
..+.-...-++.+++....|-|.... -.-.|||+...|| ...+++-|.+|+.+|..-..
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhhc
Confidence 44455556667778888876554321 1446899888776 34567778888888876443
No 56
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.32 E-value=1.7e+02 Score=20.46 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
+++-.|--++++|+|++++.+=+..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666777888999998887777664
No 57
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=21.24 E-value=5.8e+02 Score=22.61 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++..+.+++.. .+-..+=...+..+|-. .+....|.+.+..
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 44567788888888888888888888865 22344455566666654 4666667666653
No 58
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.23 E-value=3.8e+02 Score=20.40 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029240 42 LTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILK 107 (196)
Q Consensus 42 Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~ 107 (196)
+|.+|-|-+.-..+.++...+...+.+..+.+..............+.-.+.+..++...+++|-+
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877777888888888888888766554322211112334444556666666666666543
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.84 E-value=2.1e+02 Score=18.30 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhc
Q 029240 13 AKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 13 Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+.++-+.++|+.+++++..++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~ 24 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL 24 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh
Confidence 45677889999999999998875
No 60
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.62 E-value=1e+02 Score=18.70 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=24.4
Q ss_pred cccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 029240 133 YYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (196)
Q Consensus 133 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~ 171 (196)
-|-=++|+.-..++ -.+|.+=|++|+++-++.+||.
T Consensus 3 v~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 33445666554433 4567888999999998877763
No 61
>PF02154 FliM: Flagellar motor switch protein FliM; InterPro: IPR001689 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N or C termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body; PDB: 3SOH_C 2HP7_A.
Probab=20.23 E-value=67 Score=25.91 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 029240 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK 74 (196)
Q Consensus 39 ~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~ 74 (196)
+.+||.=|..++..-.+.++...+.||+.+..++-.
T Consensus 105 ~R~~T~iE~~i~~~v~~~~~~~l~~aw~~v~~~~~~ 140 (192)
T PF02154_consen 105 GREFTEIEQRILRRVVERILEALREAWQPVVPLEFE 140 (192)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHHCTTTH---EE
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhhceeeeeE
Confidence 368999999999999999999999999999876644
No 62
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.22 E-value=5.4e+02 Score=24.68 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCHHHHHHHHH---HHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHH
Q 029240 22 YEEMVKFMDSLVTSSTPATELTVEERNLLSV---AYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVE 95 (196)
Q Consensus 22 y~dm~~~mk~~i~~~~~~~~Lt~eERnLls~---ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~ 95 (196)
.++.-++|+..... .+.-.+|..+|-. +|..++..-+..+..|..--++|...-+....+++++||.++.
T Consensus 121 L~~v~~~~~~~~~~----~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~ 193 (508)
T PF00901_consen 121 LEKVYKFMKGQEKV----EEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKID 193 (508)
T ss_pred HHHHHHHHHHhHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44555555554432 3455567777765 4566777778888888766677765556667788899988864
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.17 E-value=7.7e+02 Score=23.58 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHH
Q 029240 17 EQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVES 96 (196)
Q Consensus 17 eq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~ 96 (196)
++..+|...+.-+|..++..+ .|.++.+=...|..+...+-. +-..+.+. .-....+...-..+.+
T Consensus 414 ~~l~~~~~~l~~ikR~lek~n-LPGlp~~y~~~~~~~~~~i~~-------l~~~L~~~------pinm~~v~~~l~~a~~ 479 (560)
T PF06160_consen 414 EKLQKLKQKLREIKRRLEKSN-LPGLPEDYLDYFFDVSDEIEE-------LSDELNQV------PINMDEVNKQLEEAED 479 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHH-------HHHHHhcC------CcCHHHHHHHHHHHHH
Confidence 445668888888888887654 477777766666666544221 11122222 1235677778888889
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHH------HHHHHHHHhhcCCC
Q 029240 97 ELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLS------YKAAQDIALTDLAP 170 (196)
Q Consensus 97 EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a------Y~~A~~~a~~~l~p 170 (196)
.+..+...+-++|+...+-. ..-.|=. ||.+... +-.....+|..+ |.+|++.|.+-|..
T Consensus 480 ~v~~L~~~t~~li~~A~L~E----~~iQYaN-------RYR~~~~---~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~ 545 (560)
T PF06160_consen 480 DVETLEEKTEELIDNATLAE----QLIQYAN-------RYRSDNP---EVDEALTEAEDLFRNEYDYEKALETIATALEK 545 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHh-------cccCCCH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 99999999999998765432 1222322 4443222 222233344433 56699998776666
Q ss_pred CCc
Q 029240 171 THP 173 (196)
Q Consensus 171 ~~p 173 (196)
.+|
T Consensus 546 veP 548 (560)
T PF06160_consen 546 VEP 548 (560)
T ss_pred hCC
Confidence 666
No 64
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=20.15 E-value=1.9e+02 Score=20.00 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
-+++-.|--.+.+|+|++++.++.+.++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677778889999999999888875
Done!