Query 029240
Match_columns 196
No_of_seqs 109 out of 523
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqu_A 14-3-3 protein sigma; s 100.0 8.8E-82 3E-86 531.7 16.8 190 4-196 6-195 (236)
2 3uzd_A 14-3-3 protein gamma; s 100.0 1.8E-81 6.2E-86 532.8 18.0 191 3-196 1-193 (248)
3 3ubw_A 14-3-3E, 14-3-3 protein 100.0 6.3E-81 2.1E-85 531.8 18.4 191 3-196 28-218 (261)
4 2br9_A 14-3-3E, 14-3-3 protein 100.0 2.4E-79 8.3E-84 517.1 18.1 191 3-196 2-192 (234)
5 1o9d_A 14-3-3-like protein C; 100.0 2.4E-78 8.1E-83 517.3 18.6 192 4-196 6-197 (260)
6 2npm_A 14-3-3 domain containin 100.0 5.4E-78 1.8E-82 514.8 18.1 191 5-196 27-217 (260)
7 2o8p_A 14-3-3 domain containin 100.0 2.2E-77 7.6E-82 501.4 16.6 179 5-196 2-187 (227)
8 3efz_A 14-3-3 protein; 14-3-3, 100.0 1.3E-77 4.6E-82 512.6 12.6 185 5-196 28-216 (268)
9 3lf9_A 4E10_D0_1IS1A_001_C (T1 87.0 3.2 0.00011 31.0 7.8 89 20-113 11-103 (121)
10 3u4t_A TPR repeat-containing p 80.3 5.7 0.00019 30.5 7.2 43 152-196 197-240 (272)
11 3edt_B KLC 2, kinesin light ch 78.4 19 0.00066 27.1 13.5 44 150-194 143-186 (283)
12 3u4t_A TPR repeat-containing p 77.5 20 0.0007 27.2 9.7 20 150-174 237-256 (272)
13 4g1t_A Interferon-induced prot 76.7 27 0.00094 29.1 11.0 41 9-54 337-377 (472)
14 3qwp_A SET and MYND domain-con 72.7 6.2 0.00021 34.8 6.0 44 150-194 345-388 (429)
15 3n71_A Histone lysine methyltr 72.2 16 0.00055 32.8 8.8 85 96-194 326-410 (490)
16 3ulq_A Response regulator aspa 72.0 17 0.00057 29.9 8.3 60 122-195 101-161 (383)
17 4g1t_A Interferon-induced prot 71.2 44 0.0015 27.8 13.6 27 9-35 250-276 (472)
18 4gfq_A Ribosome-recycling fact 69.0 10 0.00034 30.9 6.0 73 40-113 127-199 (209)
19 4a1s_A PINS, partner of inscut 67.4 48 0.0017 26.8 17.1 176 7-195 49-241 (411)
20 3qww_A SET and MYND domain-con 66.3 5.3 0.00018 35.4 4.2 44 151-195 315-358 (433)
21 3qww_A SET and MYND domain-con 64.7 30 0.001 30.5 8.8 80 96-188 315-394 (433)
22 1dd5_A Ribosome recycling fact 63.0 16 0.00056 29.0 6.1 73 40-113 103-175 (185)
23 1ise_A Ribosome recycling fact 61.3 17 0.00059 28.8 5.9 73 40-113 103-175 (185)
24 3sf4_A G-protein-signaling mod 61.1 61 0.0021 25.8 16.8 29 7-35 10-38 (406)
25 1is1_A Ribosome recycling fact 60.5 18 0.00062 28.7 5.9 68 40-113 103-175 (185)
26 1wqg_A Ribosome recycling fact 59.2 20 0.00068 28.5 5.9 69 40-113 103-175 (185)
27 1eh1_A Ribosome recycling fact 58.6 17 0.00059 28.8 5.5 73 40-113 104-176 (185)
28 3n71_A Histone lysine methyltr 58.4 8.8 0.0003 34.5 4.2 44 151-195 326-369 (490)
29 3edt_B KLC 2, kinesin light ch 58.2 44 0.0015 24.9 7.8 44 150-194 59-102 (283)
30 3q15_A PSP28, response regulat 58.1 28 0.00096 28.5 7.1 62 120-194 97-158 (378)
31 3vtx_A MAMA; tetratricopeptide 57.7 48 0.0017 23.6 14.6 58 7-69 6-63 (184)
32 1ge9_A Ribosome recycling fact 56.3 37 0.0013 26.9 7.1 70 40-113 105-174 (184)
33 3ro2_A PINS homolog, G-protein 56.0 65 0.0022 24.5 16.9 175 7-194 6-200 (338)
34 1lyp_A CAP18; lipopolysacchari 55.6 25 0.00084 19.5 4.5 27 85-111 4-30 (32)
35 3qky_A Outer membrane assembly 55.1 68 0.0023 24.5 11.9 61 10-71 152-221 (261)
36 4ga2_A E3 SUMO-protein ligase 51.6 44 0.0015 23.7 6.4 27 9-35 34-60 (150)
37 2xpi_A Anaphase-promoting comp 51.1 1.2E+02 0.004 26.0 14.5 25 10-34 411-435 (597)
38 4abn_A Tetratricopeptide repea 50.7 1.2E+02 0.0041 26.1 13.2 58 7-69 103-161 (474)
39 3hym_B Cell division cycle pro 49.8 85 0.0029 24.1 13.9 28 8-35 127-154 (330)
40 1ya0_A SMG-7 transcript varian 49.6 1.2E+02 0.0041 27.3 10.3 46 130-187 158-209 (497)
41 3caz_A BAR protein; thermo-aci 49.2 1E+02 0.0036 24.9 10.3 111 11-165 99-209 (294)
42 3ieg_A DNAJ homolog subfamily 48.1 93 0.0032 24.0 14.2 25 10-34 158-182 (359)
43 3ulq_A Response regulator aspa 45.7 1.2E+02 0.0041 24.5 12.0 63 122-196 141-203 (383)
44 2wh5_A Acyl-COA-binding domain 44.7 35 0.0012 24.5 4.8 49 20-70 10-74 (106)
45 4b4t_Q 26S proteasome regulato 44.0 1.3E+02 0.0044 24.5 13.5 27 9-35 58-84 (434)
46 3qwp_A SET and MYND domain-con 43.2 1.6E+02 0.0056 25.4 13.2 79 97-188 347-425 (429)
47 4gco_A Protein STI-1; structur 42.9 50 0.0017 22.8 5.5 59 7-70 48-106 (126)
48 2r17_C Vacuolar protein sortin 42.5 18 0.00061 30.8 3.4 42 150-191 211-253 (298)
49 1fch_A Peroxisomal targeting s 41.2 1.3E+02 0.0044 23.6 11.2 58 7-69 218-275 (368)
50 3bee_A Putative YFRE protein; 40.9 33 0.0011 23.1 4.1 29 7-35 44-72 (93)
51 3ma5_A Tetratricopeptide repea 40.8 73 0.0025 20.7 10.0 57 7-68 8-64 (100)
52 4eqf_A PEX5-related protein; a 40.4 1.4E+02 0.0046 23.7 10.2 54 12-69 183-237 (365)
53 3fp2_A TPR repeat-containing p 39.0 1.7E+02 0.0058 24.4 13.2 58 7-69 311-368 (537)
54 3nf1_A KLC 1, kinesin light ch 38.8 1.2E+02 0.0043 22.8 17.7 173 7-194 28-212 (311)
55 2l6j_A TPR repeat-containing p 38.5 74 0.0025 20.1 6.2 30 6-35 4-33 (111)
56 2xcb_A PCRH, regulatory protei 38.1 96 0.0033 21.3 10.9 26 9-34 21-46 (142)
57 3gyz_A Chaperone protein IPGC; 37.5 95 0.0032 22.5 6.5 44 7-54 37-80 (151)
58 4i17_A Hypothetical protein; T 36.5 1.3E+02 0.0043 22.2 13.4 59 7-69 8-66 (228)
59 1xnf_A Lipoprotein NLPI; TPR, 35.7 1.3E+02 0.0046 22.3 13.5 27 9-35 80-106 (275)
60 2kat_A Uncharacterized protein 35.7 91 0.0031 20.3 12.6 59 6-69 19-77 (115)
61 2y4t_A DNAJ homolog subfamily 34.6 1.8E+02 0.0063 23.5 14.8 56 10-70 147-202 (450)
62 2fbn_A 70 kDa peptidylprolyl i 34.6 1.1E+02 0.0038 22.2 6.5 59 7-70 89-147 (198)
63 1na3_A Designed protein CTPR2; 33.5 81 0.0028 19.1 6.6 59 7-70 10-68 (91)
64 3k9i_A BH0479 protein; putativ 33.5 1E+02 0.0035 20.3 9.1 57 8-69 29-85 (117)
65 2y4t_A DNAJ homolog subfamily 33.4 1.9E+02 0.0066 23.4 14.0 59 7-70 178-236 (450)
66 1hxi_A PEX5, peroxisome target 33.0 1.1E+02 0.0039 20.6 6.6 58 7-69 18-75 (121)
67 4fhn_B Nucleoporin NUP120; pro 32.8 91 0.0031 30.7 7.1 60 10-71 903-964 (1139)
68 3sf4_A G-protein-signaling mod 32.4 1.8E+02 0.0063 22.9 15.8 27 9-35 50-76 (406)
69 3sz7_A HSC70 cochaperone (SGT) 32.0 1.3E+02 0.0044 21.0 11.6 26 9-34 14-39 (164)
70 3ieg_A DNAJ homolog subfamily 31.8 1.7E+02 0.006 22.4 16.0 56 10-70 124-179 (359)
71 1hxi_A PEX5, peroxisome target 31.6 1.1E+02 0.0038 20.7 5.7 27 9-35 54-80 (121)
72 1tdp_A Carnobacteriocin B2 imm 31.0 1.2E+02 0.0041 22.1 5.7 66 48-131 10-82 (111)
73 2kck_A TPR repeat; tetratricop 31.0 97 0.0033 19.2 7.6 27 9-35 9-35 (112)
74 1elw_A TPR1-domain of HOP; HOP 30.0 1E+02 0.0035 19.2 6.6 30 6-35 4-33 (118)
75 3ro3_A PINS homolog, G-protein 29.4 1.2E+02 0.0042 19.9 10.9 27 9-35 12-38 (164)
76 2vyi_A SGTA protein; chaperone 29.0 1.1E+02 0.0039 19.4 6.5 62 7-73 47-108 (131)
77 3ma5_A Tetratricopeptide repea 28.7 67 0.0023 20.9 4.0 29 7-35 42-70 (100)
78 1elr_A TPR2A-domain of HOP; HO 28.3 1.2E+02 0.004 19.3 6.5 28 8-35 81-108 (131)
79 2xcb_A PCRH, regulatory protei 28.3 1.4E+02 0.0049 20.3 6.5 27 9-35 55-81 (142)
80 3ro2_A PINS homolog, G-protein 28.2 1.9E+02 0.0065 21.7 14.5 27 9-35 46-72 (338)
81 4eqf_A PEX5-related protein; a 28.2 2.2E+02 0.0075 22.4 12.2 58 7-69 66-123 (365)
82 2ifu_A Gamma-SNAP; membrane fu 28.1 2.2E+02 0.0075 22.4 10.4 29 8-36 38-66 (307)
83 2w2u_A Hypothetical P60 katani 28.1 74 0.0025 21.5 4.1 27 8-34 21-47 (83)
84 3urz_A Uncharacterized protein 27.0 1.5E+02 0.0052 21.8 6.2 55 12-71 60-114 (208)
85 3vtx_A MAMA; tetratricopeptide 26.7 1.7E+02 0.0057 20.5 7.1 25 10-34 77-101 (184)
86 3hym_B Cell division cycle pro 26.5 2.1E+02 0.0072 21.7 13.6 18 150-167 209-226 (330)
87 2kc7_A BFR218_protein; tetratr 25.7 1.3E+02 0.0043 18.8 6.4 27 9-35 3-29 (99)
88 3cv0_A Peroxisome targeting si 24.4 2.3E+02 0.0079 21.4 12.6 28 8-35 23-50 (327)
89 2pl2_A Hypothetical conserved 24.4 2.2E+02 0.0075 21.1 14.6 28 8-35 7-34 (217)
90 2v6y_A AAA family ATPase, P60 24.2 97 0.0033 20.8 4.1 27 8-34 13-39 (83)
91 2xpi_A Anaphase-promoting comp 23.6 3.4E+02 0.011 23.0 16.1 24 11-34 378-401 (597)
92 4a1s_A PINS, partner of inscut 23.5 2.8E+02 0.0096 22.1 14.6 27 9-35 89-115 (411)
93 3q49_B STIP1 homology and U bo 23.2 1.6E+02 0.0056 19.2 6.9 30 6-35 9-38 (137)
94 3iyk_A VP5; icosahedral virus; 23.0 4.4E+02 0.015 24.1 9.1 73 20-95 121-199 (526)
95 2q7f_A YRRB protein; TPR, prot 22.5 2.2E+02 0.0076 20.5 14.2 59 7-70 58-116 (243)
96 2g0u_A Type III secretion syst 22.3 51 0.0017 23.3 2.3 52 131-186 12-67 (92)
97 4etr_A Putative uncharacterize 21.9 1.5E+02 0.0052 21.9 5.2 18 150-170 108-125 (153)
98 3gw4_A Uncharacterized protein 20.6 95 0.0033 22.0 3.7 62 122-195 64-125 (203)
99 2wb7_A PT26-6P; extra chromoso 20.4 1.4E+02 0.0048 27.4 5.3 54 138-192 436-489 (526)
100 2qfc_A PLCR protein; TPR, HTH, 20.4 3E+02 0.01 21.2 18.0 169 7-196 76-255 (293)
101 2k0m_A Uncharacterized protein 20.2 1.1E+02 0.0039 21.8 3.9 35 22-56 17-51 (104)
No 1
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=100.00 E-value=8.8e-82 Score=531.67 Aligned_cols=190 Identities=58% Similarity=0.892 Sum_probs=185.3
Q ss_pred CcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhh
Q 029240 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (196)
Q Consensus 4 ~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~ 83 (196)
.+|++++|+|||||||||||||+++||++++. + ++||.||||||||||||+||++|+|||+|+++||+++.+|++.+
T Consensus 6 ~~re~~v~~AklaeqaeRyddM~~~mk~v~~~-~--~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~ 82 (236)
T 3iqu_A 6 MERASLIQKAKLAEQAERYEDMAAFMKGAVEK-G--EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEK 82 (236)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C--CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHH
Confidence 37999999999999999999999999999986 3 89999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHH
Q 029240 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (196)
Q Consensus 84 ~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (196)
++.+++||++|++||..+|++|+++||++|||++++++++|||+|||||||||+|||..|++|++++++|++||++|+++
T Consensus 83 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~i 162 (236)
T 3iqu_A 83 GPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDI 162 (236)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 164 a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
|+++||||||||||||||||||||||+|+|++|
T Consensus 163 A~~~L~pthPirLGLaLNfSVFyyEiln~~~~A 195 (236)
T 3iqu_A 163 SKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA 195 (236)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999876
No 2
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=100.00 E-value=1.8e-81 Score=532.80 Aligned_cols=191 Identities=54% Similarity=0.873 Sum_probs=181.8
Q ss_pred CCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 3 TPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 3 ~~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
|.+|+++||+|||||||||||||+++||++++. + ++||.||||||||||||+||++|+|||+|+++||+++.+|++.
T Consensus 1 m~~re~lv~~AklaeqaeRyddM~~~Mk~v~~~-~--~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~ 77 (248)
T 3uzd_A 1 MVDREQLVQKARLAEQAERYDDMAAAMKNVTEL-N--EPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEK 77 (248)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHH
Confidence 457999999999999999999999999999986 3 8999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC--hhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHH
Q 029240 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAG--ESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAA 160 (196)
Q Consensus 83 ~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~--eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 160 (196)
+++++++||++|++||..+|++|+++||++|||.++++ +++|||+|||||||||+|||..|++|++++++|++||++|
T Consensus 78 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A 157 (248)
T 3uzd_A 78 KIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEA 157 (248)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 161 QDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 161 ~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
+++|+++||||||||||||||||||||||+|+|++|
T Consensus 158 ~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~A 193 (248)
T 3uzd_A 158 HEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQA 193 (248)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999876
No 3
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.3e-81 Score=531.81 Aligned_cols=191 Identities=66% Similarity=1.037 Sum_probs=185.1
Q ss_pred CCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 3 TPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 3 ~~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
|.+|++++|+|||||||||||||+++||++++. + ++||.||||||||||||+||++|+|||+|+++||+++.+|++.
T Consensus 28 m~~re~lv~~AKLaeqaeRYddMv~~MK~v~~~-~--~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~ 104 (261)
T 3ubw_A 28 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGM-D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED 104 (261)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-C--CcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH
Confidence 458999999999999999999999999999986 3 8999999999999999999999999999999999998889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 029240 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQD 162 (196)
Q Consensus 83 ~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 162 (196)
+++.+++||++|++||..+|++|+++||++|||++++++++|||+|||||||||+|||..|++|++++++|++||++|++
T Consensus 105 ~~~~i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~ 184 (261)
T 3ubw_A 105 KLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD 184 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 163 IALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 163 ~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
+|+++||||||||||||||||||||||+|+|++|
T Consensus 185 iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~A 218 (261)
T 3ubw_A 185 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA 218 (261)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999876
No 4
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=100.00 E-value=2.4e-79 Score=517.13 Aligned_cols=191 Identities=66% Similarity=1.037 Sum_probs=184.5
Q ss_pred CCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 3 TPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 3 ~~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
|++|++++|+||||+||||||||+++||++++. + ++||.||||||||||||+||++|+|||+|+++||+++.+|++.
T Consensus 2 m~~re~~v~~AklaeqaeRyddm~~~mk~v~~~-~--~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~ 78 (234)
T 2br9_A 2 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGM-D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED 78 (234)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHHhcc-c--CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchH
Confidence 457999999999999999999999999999985 3 8999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 029240 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQD 162 (196)
Q Consensus 83 ~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 162 (196)
+++.+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|++||++|++
T Consensus 79 ~~~~i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~ 158 (234)
T 2br9_A 79 KLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASD 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 163 IALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 163 ~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
+|+.+|||||||||||+||||||||||+|+|++|
T Consensus 159 iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A 192 (234)
T 2br9_A 159 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRA 192 (234)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998999999999999999999999999999876
No 5
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=100.00 E-value=2.4e-78 Score=517.27 Aligned_cols=192 Identities=74% Similarity=1.111 Sum_probs=185.2
Q ss_pred CcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhh
Q 029240 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (196)
Q Consensus 4 ~~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~ 83 (196)
++|++++|+|||++||||||||+++||++++.. .+++||.||||||||||||+||++|+|||+|+++||+++.+|++.+
T Consensus 6 ~~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~-~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~ 84 (260)
T 1o9d_A 6 TAREENVYMAKLAEQAERYEEMVEFMEKVSNSL-GSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEH 84 (260)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTC-SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-CCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHH
Confidence 479999999999999999999999999999852 1279999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHH
Q 029240 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (196)
Q Consensus 84 ~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (196)
++.+++||++|++||..+|++|+++||++|||.+++++++|||+|||||||||+|||..|++|++++++|++||++|+++
T Consensus 85 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 164 (260)
T 1o9d_A 85 VNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDI 164 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 164 a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
|+.+||||||||||||||||||||||+|+|++|
T Consensus 165 A~~~L~pthPirLGLaLNfSVFyYEiln~~~~A 197 (260)
T 1o9d_A 165 ATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197 (260)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 998999999999999999999999999999876
No 6
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=100.00 E-value=5.4e-78 Score=514.81 Aligned_cols=191 Identities=61% Similarity=0.985 Sum_probs=182.4
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhH
Q 029240 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (196)
Q Consensus 5 ~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~ 84 (196)
+|++++|+|||++||||||||+++||++++....+++||.||||||||||||+||++|+|||+|+++||+++.+|++.++
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~ 106 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDAS 106 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHH
Confidence 59999999999999999999999999999852001699999999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHH
Q 029240 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (196)
Q Consensus 85 ~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (196)
+.+++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|++||++|+++|
T Consensus 107 ~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA 186 (260)
T 2npm_A 107 KMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA 186 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 165 ~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
.+||||||||||||||||||||||+|+|++|
T Consensus 187 -~~L~pthPirLGLaLNfSVFyYEiln~~~~A 217 (260)
T 2npm_A 187 -KDLEPTHPIRLGLALNFSVFHYEILNEPRAA 217 (260)
T ss_dssp -TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred -HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999999999999999876
No 7
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=100.00 E-value=2.2e-77 Score=501.43 Aligned_cols=179 Identities=22% Similarity=0.298 Sum_probs=172.6
Q ss_pred cHHhHH---HHHHHHHHhcCHHHHHHHHHHHhh----ccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhc
Q 029240 5 TREQYV---YLAKLAEQAERYEEMVKFMDSLVT----SSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEG 77 (196)
Q Consensus 5 ~re~~i---~~Aklaeq~ery~dm~~~mk~~i~----~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~ 77 (196)
+|++++ |+||||+||||||||+++||++++ . + ++||.||||||||||||+||++|+|||+|+++||++
T Consensus 2 ~re~~v~~~~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~--~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-- 76 (227)
T 2o8p_A 2 EMDERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFE-N--SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-- 76 (227)
T ss_dssp -CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcc-C--CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--
Confidence 488999 999999999999999999999998 5 3 899999999999999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHH
Q 029240 78 RKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSY 157 (196)
Q Consensus 78 ~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY 157 (196)
+|++.+++++++||++|++||..+|++|+++||++|||++ +++|||+|||||||||+|||..|+ +++|++||
T Consensus 77 k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a---EskVFY~KMKGDYyRYlAE~~~g~-----~e~a~~aY 148 (227)
T 2o8p_A 77 LNNDELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSF---FSKFFKLKVKSDISRYKLEFGLCS-----LEDSKKIH 148 (227)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSH---HHHHHHHHHHHHHHHHHHHTTSSC-----HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcH---HHHHHHHHHhhhHHHHHHHHcccc-----HHHHHHHH
Confidence 6788899999999999999999999999999999999998 999999999999999999999998 89999999
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 158 KAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 158 ~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
++|+++|+++|||||||||||+||||||||||+|+|++|
T Consensus 149 ~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~A 187 (227)
T 2o8p_A 149 QDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQV 187 (227)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999999876
No 8
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=100.00 E-value=1.3e-77 Score=512.60 Aligned_cols=185 Identities=24% Similarity=0.415 Sum_probs=157.9
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh-hcccc-hh
Q 029240 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE-EGRKN-EE 82 (196)
Q Consensus 5 ~re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~-~~~~~-~~ 82 (196)
+|++++|+|||||||||||||+++| ++. + ++||.||||||||||||+||++|+|||+|+++||++ +.+|+ +.
T Consensus 28 ~r~~lv~~AKLaeqaeRYddMv~~M---~e~-~--~eLs~EERNLLSvAYKNvIgarR~swRiissieqke~e~kg~~~~ 101 (268)
T 3efz_A 28 KLSEGAYRAKLADMVGNYKDVIKVL---TES-S--DFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNE 101 (268)
T ss_dssp ------------------CHHHHHH---TC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHH---Hhc-C--CcCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhccCChHH
Confidence 6999999999999999999999999 654 3 899999999999999999999999999999999999 77788 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 029240 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQD 162 (196)
Q Consensus 83 ~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 162 (196)
+++.+++||++|++||..+|++|+++||++|||.++++ ++|||+|||||||||+|||..|++|++++++|++||++|++
T Consensus 102 ~~~~i~~yr~kie~EL~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~e 180 (268)
T 3efz_A 102 FIQVIEDIKRDFEESILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQ 180 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhhcC--CCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 163 IALTDL--APTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 163 ~a~~~l--~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
+|+++| |||||||||||||||||||||+|+|++|
T Consensus 181 iA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~A 216 (268)
T 3efz_A 181 RERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGA 216 (268)
T ss_dssp HHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999899 9999999999999999999999999876
No 9
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=87.02 E-value=3.2 Score=31.01 Aligned_cols=89 Identities=19% Similarity=0.094 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH--Hh--hhhhcccchhhHHHHHHHHHHHH
Q 029240 20 ERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS--IE--QKEEGRKNEEHVSLVKDYRSKVE 95 (196)
Q Consensus 20 ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~--~e--q~~~~~~~~~~~~~i~~y~~ki~ 95 (196)
+|.|..++++|.-+....-|.+||.|-|.=|.--.|...-.-|-|.|.+.. .. .+.+..+ .+-++-..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~Kdk-----eISEDe~kr~e 85 (121)
T 3lf9_A 11 ERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDK-----EVNWFDISQAL 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCT-----TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcC-----CCCHHHHHhHH
Confidence 577888888887664433358999999999998888888777888877742 11 1111001 11133344455
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 029240 96 SELSDVCGSILKLLDSHL 113 (196)
Q Consensus 96 ~EL~~iC~eii~lid~~L 113 (196)
++|..+.+..+.-||..|
T Consensus 86 ~eIQKLTDkyIkkID~ll 103 (121)
T 3lf9_A 86 WEIQKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666665555543
No 10
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=80.34 E-value=5.7 Score=30.46 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHhCCcccC
Q 029240 152 NTMLSYKAAQDIALTDLAPTHPIRL-GLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 152 ~a~~aY~~A~~~a~~~l~p~~pirL-gL~LN~SVF~yEi~~~~~~A 196 (196)
.|...|++|.++....-.+. +-.+ ....+.+.+ |..+++.++|
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-~~~~~~~~~A 240 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYY-YTINRDKVKA 240 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHH-HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHH-HHHcCCHHHH
Confidence 36788999998886433322 2223 333334443 4445665543
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=78.39 E-value=19 Score=27.06 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
.+.|...|++|+++.....++.+|.......|.+..++. +++.+
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~ 186 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHH
Confidence 467899999999999888888899888777787776654 34443
No 12
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=77.55 E-value=20 Score=27.18 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCch
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPI 174 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pi 174 (196)
.+.|.+.|++|++ +.|.||.
T Consensus 237 ~~~A~~~~~~al~-----~~p~~~~ 256 (272)
T 3u4t_A 237 KVKADAAWKNILA-----LDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHH-----HCTTCHH
T ss_pred HHHHHHHHHHHHh-----cCccHHH
Confidence 4567888888875 4577774
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=76.71 E-value=27 Score=29.09 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY 54 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ay 54 (196)
...+|.+..+.|+|++++++.+++++. ++++.+...+...|
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Confidence 456788899999999999999999863 34555554433333
No 14
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=72.72 E-value=6.2 Score=34.75 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
-+.|...|++|+++-+..++|.||.......|.++.|.. .++.+
T Consensus 345 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~-~g~~~ 388 (429)
T 3qwp_A 345 LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH-QGMFP 388 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh-cCCHH
Confidence 367899999999999999999999999999999888765 44433
No 15
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=72.18 E-value=16 Score=32.77 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 029240 96 SELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIR 175 (196)
Q Consensus 96 ~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pir 175 (196)
+|-..+|..++.+-.+.|=|...+ ..=-+.-.|..|+.+-. -+.|...|++|+++-...++|.||--
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQA----------YEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 455677888888776666454321 11112222332222211 35689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcc
Q 029240 176 LGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 176 LgL~LN~SVF~yEi~~~~~ 194 (196)
+....|.++.|+. .++.+
T Consensus 393 a~~l~nLa~~~~~-~G~~~ 410 (490)
T 3n71_A 393 GMAVMRAGLTNWH-AGHIE 410 (490)
T ss_dssp HHHHHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHH-CCCHH
Confidence 9999999988765 34443
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=71.98 E-value=17 Score=29.88 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH-HHHHHHHHHhCCccc
Q 029240 122 SKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLAL-NFSVFYYEILNSSEK 195 (196)
Q Consensus 122 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~L-N~SVF~yEi~~~~~~ 195 (196)
-..+|+-.+|.++...-. -+.|...|++|++++.. . | +|...+.++ |.+..|+ .+++.++
T Consensus 101 l~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~-~-~~~~~a~~~~~lg~~~~-~~~~~~~ 161 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQRE----------YLSAIKFFKKAESKLIF-V-K-DRIEKAEFFFKMSESYY-YMKQTYF 161 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-C-C-CHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhh-C-C-CHHHHHHHHHHHHHHHH-HcCCHHH
Confidence 345666677776644322 45688999999988764 3 2 344444444 4444444 3555543
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=71.23 E-value=44 Score=27.80 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..+|.+..+.|+|++.+.+.+++++.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 344566666666666666666666654
No 18
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=68.96 E-value=10 Score=30.85 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|....|...-.-|.|.|.+..--... .+.-.+.-.+-++-..+.+++|..+.++.+.-||..+
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~-lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~l 199 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDD-LKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIA 199 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988888888888875211000 0000000012234445667777777777777777654
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=67.42 E-value=48 Score=26.84 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=83.6
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHH----HHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVE----ERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~e----ERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
..+..+|....+.|+|++++.+..++++.. +. +.+ =...+..+|-. .+....+...+....+.....++..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~-~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG---TE-DLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CS-CHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---cc-ChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCch
Confidence 456678888999999999999999999763 32 222 22334444432 3444455554432211111011111
Q ss_pred -hH----HHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhh-------ccchhHHHH
Q 029240 83 -HV----SLVKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEF-------KVGDERKAA 149 (196)
Q Consensus 83 -~~----~~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~-------~~~~~~~~~ 149 (196)
.. .+..-| ...=-++-...+..++.+.... .+.......+...|..|..+-+. ...++-...
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 00 010111 1111133344555555554332 12223344444455555443320 001122334
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCccc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEK 195 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~ 195 (196)
.+.|...|++|++++... +.+|.......|.+.. |.-+++.++
T Consensus 199 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~-~~~~g~~~~ 241 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNT-YYLLGDFQA 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHH-HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH-HHHcCChHH
Confidence 677889999999888643 2334443444444444 334555443
No 20
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=66.33 E-value=5.3 Score=35.41 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCccc
Q 029240 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEK 195 (196)
Q Consensus 151 ~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~ 195 (196)
+.|...|++|+++..+-|+|.||-.+...-|.+.-|.. +++.++
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~e 358 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEG 358 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHH
Confidence 46788999999999999999999999888888777654 455443
No 21
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=64.69 E-value=30 Score=30.48 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 029240 96 SELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIR 175 (196)
Q Consensus 96 ~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pir 175 (196)
+|...+|...+.+-.+.|=|...+. +=-+.-.|.-|+.+ | --+.|...|++|+++-++.++|.||--
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~---a~~~~nLa~~y~~~-----g-----~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYM---LHMMYQAMGVCLYM-----Q-----DWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHH---HHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHH---HHHHHHHHHHHHhh-----c-----CHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 4566777888887766665553221 11112222222111 1 135789999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 029240 176 LGLALNFSVFYYE 188 (196)
Q Consensus 176 LgL~LN~SVF~yE 188 (196)
.....|.++.|..
T Consensus 382 a~~l~nLa~~~~~ 394 (433)
T 3qww_A 382 ASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887654
No 22
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=62.96 E-value=16 Score=28.95 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..--... .+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1dd5_A 103 PSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKK-IKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988888888888874210000 0000000012244455667777777777777776654
No 23
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=61.33 E-value=17 Score=28.82 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..--... .+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1ise_A 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDK-VKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998988888888888874210000 0000000012234455666777777777777666543
No 24
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=61.09 E-value=61 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
..+..++...-+.|+|++++.++.+++..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 38 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV 38 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 35667889999999999999999999975
No 25
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=60.46 E-value=18 Score=28.68 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH-----HhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISS-----IEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~-----~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+.. +...+. .+ .+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1is1_A 103 PPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLK-DK-----EISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999989888888888888742 111110 00 12234455666777777777777776544
No 26
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=59.16 E-value=20 Score=28.46 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHh----hhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIE----QKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~e----q~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..-- ++.+..+ .+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1wqg_A 103 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEG-----EAGEDEVGRAEKDLDKTTHQYVTQIDELV 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988888888888888874210 1100000 11234445566677777766666666543
No 27
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=58.58 E-value=17 Score=28.83 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..--... .+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 104 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDK-LKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988888888888874210000 0000000012244556677777777777777777654
No 28
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=58.41 E-value=8.8 Score=34.53 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCccc
Q 029240 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEK 195 (196)
Q Consensus 151 ~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~ 195 (196)
+.|...|++|+++..+-|+|.||-.+...-|.+..|.. +++.++
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~e 369 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEE 369 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHH
Confidence 35677899999999989999999999999888877654 444443
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=58.20 E-value=44 Score=24.93 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
.+.|...|++|++++...+.+.+|.......|.+..++ -.++.+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 102 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHH
Confidence 36689999999999988788888877777777776554 345444
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=58.12 E-value=28 Score=28.55 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred ChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 120 GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 120 ~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
+.-..+|+-.+|.++...-. -+.|...|++|..++.. ++ .+|..-....|.+..|+ .+++.+
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~~-~~~~~a~~~~~lg~~y~-~~~~~~ 158 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKE----------YVEAIGYYREAEKELPF-VS-DDIEKAEFHFKVAEAYY-HMKQTH 158 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-CC-CHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred cHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHhh-CC-ChHHHHHHHHHHHHHHH-HcCCcH
Confidence 33455667777877644322 45689999999988864 32 33444444445555554 345443
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=57.68 E-value=48 Score=23.57 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
.-...++.+..+-|+|++++++.+++++.. | =+.+=...+..+|-. .+....+...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~~la~~~~~-~~~~~~a~~~~~ 63 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---P-NNVETLLKLGKTYMD-IGLPNDAIESLK 63 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 445678999999999999999999999762 3 345555666666644 344444444443
No 32
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=56.26 E-value=37 Score=26.87 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029240 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (196)
Q Consensus 40 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 113 (196)
|+||.|-|.=|.-..|...-..|.+.|.+..--... .+... ++-++-..+.++++..+.+..+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~---kiseD~~k~~e~~iQkltd~~i~~id~~~ 174 (184)
T 1ge9_A 105 PPLTEERRRELVRLLHKITEEARVRVRNVRREAKEM-IEELE---GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHST---TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888874211110 00000 02345556677777777777777777654
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=55.96 E-value=65 Score=24.50 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=82.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHH----HHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVE----ERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEE 82 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~e----ERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 82 (196)
..+...|....+.|+|++++.+.+++++.. +. +.+ =...+..+|-. .+....+...+....+.....++..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG---TE-DLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CS-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cc-cHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccH
Confidence 467788999999999999999999999753 22 222 12233333332 2333444444432111111011111
Q ss_pred h-H----HHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhc----------cchhH
Q 029240 83 H-V----SLVKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFK----------VGDER 146 (196)
Q Consensus 83 ~-~----~~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~----------~~~~~ 146 (196)
. . .+..-| ...--++-...+...+.+... ..++...+..+...|..|..+-+.. ..++-
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 1 1 111111 111123334445555554433 2233344445556666665544310 01122
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 147 KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 147 ~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
....+.|...|++|+.++... + .+|.......|.+.. |--+++.+
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~-~-~~~~~~~~~~~l~~~-~~~~~~~~ 200 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTAL-G-DRAAQGRAFGNLGNT-HYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHH-HHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHH-HHHhCCHH
Confidence 334667888888888887642 2 233333333344433 33455544
No 34
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=55.59 E-value=25 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029240 85 SLVKDYRSKVESELSDVCGSILKLLDS 111 (196)
Q Consensus 85 ~~i~~y~~ki~~EL~~iC~eii~lid~ 111 (196)
+.+..|+.+|.+.|..|-+.|-.++.+
T Consensus 4 krlrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456789999999999999988877643
No 35
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=55.11 E-value=68 Score=24.46 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhh---------hhhhhHHHHHHHHH
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNV---------IGSLRAAWRIISSI 71 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~---------i~~~R~s~R~l~~~ 71 (196)
..+|.+..+.|+|++++...++++... ++.+...+-...+..+|.+. .+....|...+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 678999999999999999999999763 23445666777778888654 24445555555443
No 36
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=51.58 E-value=44 Score=23.73 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
...+|++..+.|+|++++++.+++++.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~ 60 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINV 60 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999976
No 37
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=51.07 E-value=1.2e+02 Score=25.98 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
..++.+..+.|+++++++.+++++.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=50.72 E-value=1.2e+02 Score=26.07 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHHhcCH-HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERY-EEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery-~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
+-+..+|++....|+| ++++.+++++++.. +-..+-...+..+|-. .+....|...+.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~-~g~~~~A~~~~~ 161 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWK-KGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3456777888888999 99999998888752 3345566666666644 244455555543
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=49.84 E-value=85 Score=24.06 Aligned_cols=28 Identities=0% Similarity=-0.062 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+..+|.+..+.|+|++++.+.++++..
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3456677777777777777777777654
No 40
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=49.62 E-value=1.2e+02 Score=27.27 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=29.7
Q ss_pred hcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH------HHHHH
Q 029240 130 KGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNF------SVFYY 187 (196)
Q Consensus 130 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~------SVF~y 187 (196)
-||..||.... ..|...|..|..+.=.+=.|. -.||+.-.+ +||||
T Consensus 158 LGDL~RY~~~~----------~~A~~~Y~~A~~~~P~~G~~~--nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 158 LGDIARYRNQT----------SQAESYYRHAAQLVPSNGQPY--NQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHCTTBSHHH--HHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHHHHHHHHhCCCCCchH--HHHHHHHhcccccHHHHHHH
Confidence 79999999763 578999999986542211111 456664443 56666
No 41
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=49.22 E-value=1e+02 Score=24.89 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHH
Q 029240 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDY 90 (196)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y 90 (196)
..|+|.+....|-.|++-+|.-... ..|-.|.-.-||=.+.. +|.+. ..+.++..=+..
T Consensus 99 eiarllekiqkyfQ~IEtlK~ql~n--------f~e~RLiYDHYKlKvdE----------LEK~~---KdSeKI~RNQsK 157 (294)
T 3caz_A 99 EIARLLEKIQKYRQEIEEIKKEYKE--------TDKYRERYDHYKVKLDN----------LEKKN---KDQERIERNQQK 157 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH----------HHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHhHHH----------HHhcc---chHHHHHHhHHH
Confidence 3588889888898898888764432 24666666677755432 33321 122233222223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 029240 91 RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (196)
Q Consensus 91 ~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (196)
-.+-+.--..+|-|+|+-.++ +-|.|+|-++|..+. +=...--|-+|++.|.
T Consensus 158 LssAEtaYkqvcsDiInkMnk-----------------ll~n~~riineaasa------vwstqlqyakaleaaa 209 (294)
T 3caz_A 158 FKDAEAAYSSVCADLIQKMET-----------------VWKKHVSIFAEAASA------VWSTQLQYAKALEAAA 209 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 333444556678888776654 457788888886553 2223445788888774
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=48.11 E-value=93 Score=24.03 Aligned_cols=25 Identities=4% Similarity=-0.092 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
..++.+..+.|+|++++..+++++.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555555555555555555553
No 43
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=45.66 E-value=1.2e+02 Score=24.55 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=36.9
Q ss_pred hHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 122 SKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 122 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
...-.+-..|..|..+-. -+.|...|++|+++... .+ ..+.+.+.+++.--..|.-+++.++|
T Consensus 141 ~~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~~~lg~~~~~~g~~~~A 203 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKE-HE-AYNIRLLQCHSLFATNFLDLKQYEDA 203 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHT-CS-TTHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHh-Cc-cchHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344445555666554322 35789999999999975 33 23445555555544445556665543
No 44
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=44.71 E-value=35 Score=24.54 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhh----------------hhhHHHHHHHH
Q 029240 20 ERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIG----------------SLRAAWRIISS 70 (196)
Q Consensus 20 ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~----------------~~R~s~R~l~~ 70 (196)
++|+.+++.++.+-... ...++.+++-.|-.-||.... .+..||..+..
T Consensus 10 ~~F~~A~~~vk~l~~~g--~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g 74 (106)
T 2wh5_A 10 KQFQAAVSVIQNLPKNG--SYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGK 74 (106)
T ss_dssp HHHHHHHHHHHHSCSSC--SCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccccC--CCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcC
Confidence 67888898888765321 236899999988888888753 25677877643
No 45
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.96 E-value=1.3e+02 Score=24.47 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++++....|+|++++++++++...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999998864
No 46
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=43.17 E-value=1.6e+02 Score=25.42 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH
Q 029240 97 ELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRL 176 (196)
Q Consensus 97 EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirL 176 (196)
|-..+|..++.+-...+=|... ..-.-|.++ |--|...-. .+.|...|++|+++-+..+.|.||.-.
T Consensus 347 eA~~~~~~~L~i~~~~lg~~Hp--~~a~~l~nL-a~~~~~~g~----------~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 347 EALFYGTRTMEPYRIFFPGSHP--VRGVQVMKV-GKLQLHQGM----------FPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCH--HHHHHHHHH-HHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhHHHHcCCCCh--HHHHHHHHH-HHHHHhcCC----------HHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 3456777778877766655432 222222222 222222111 367899999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 029240 177 GLALNFSVFYYE 188 (196)
Q Consensus 177 gL~LN~SVF~yE 188 (196)
-+.-|..--.-|
T Consensus 414 ~~~~~l~~~~~e 425 (429)
T 3qwp_A 414 DLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877776554444
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=42.92 E-value=50 Score=22.77 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++...+++++.. + =+.+=...+..+|.. .+..-.|...+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p-~~~~a~~~lg~~~~~-~~~~~~A~~~~~~ 106 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLD---S-KFIKGYIRKAACLVA-MREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 445678899999999999999999999762 2 345566677777755 5666667777653
No 48
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=42.51 E-value=18 Score=30.84 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHH-HHHHHHHHHHHhC
Q 029240 150 AENTMLSYKAAQDIALTDLAPTHPIRLGL-ALNFSVFYYEILN 191 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p~~pirLgL-~LN~SVF~yEi~~ 191 (196)
-++.+++-++|+.+|...+.|.-++-|=+ +||..+||||.-+
T Consensus 211 ~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~g~ 253 (298)
T 2r17_C 211 GKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKEN 253 (298)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhCCC
Confidence 45789999999999998777554444443 8999999999765
No 49
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=41.24 E-value=1.3e+02 Score=23.64 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
.-+..++.+..+.|+|++++.++++++... + -+.+-.+.+..+|.. .+....|...+.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 275 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR---P-NDYLLWNKLGATLAN-GNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c-CCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345678888899999999999999988752 2 234445555555543 445555555554
No 50
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.94 E-value=33 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
.-+++++.++.+.|+|++++.+..++++.
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34566777777777777777777777754
No 51
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=40.82 E-value=73 Score=20.70 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRII 68 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l 68 (196)
.-+..+|.+..+.|+|++++.+++++++.. +. ...=...+..+|.. .+..-.|...+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~lg~~~~~-~g~~~~A~~~~ 64 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD---PD-YVGTYYHLGKLYER-LDRTDDAIDTY 64 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-CTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-cHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 456788999999999999999999999763 33 33445566666644 34444444444
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=40.39 E-value=1.4e+02 Score=23.70 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 12 LAKLAEQAERYEEMVKFMDSLVTSSTPATE-LTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 12 ~Aklaeq~ery~dm~~~mk~~i~~~~~~~~-Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
++.+....|+|++++.+.++++... +. .+..-...+..+|-. .+....+...+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 237 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQN---GDMIDPDLQTGLGVLFHL-SGEFNRAIDAFN 237 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHS---CSSCCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhC---cCccCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 4666677788888888888888653 32 245555555555533 344455555554
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=38.97 E-value=1.7e+02 Score=24.39 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
+-+..+|.+..+.|+|++++..+++++... +. +.+-...+..+|-. .+....+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 368 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN---PE-NVYPYIQLACLLYK-QGKFTESEAFFN 368 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CSHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345566777777777777777777777642 22 22334444444432 344445555554
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=38.80 E-value=1.2e+02 Score=22.81 Aligned_cols=173 Identities=16% Similarity=0.157 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccC----CCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh-hhc--cc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSST----PATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK-EEG--RK 79 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~----~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq~-~~~--~~ 79 (196)
+-+..+|.+....|+|++++.+++++++... +..+....-...+..+|-. .+....|...+...... ... ..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456788999999999999999999886310 0012222223333433322 23333444433321111 000 00
Q ss_pred chh----hHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHH
Q 029240 80 NEE----HVSLVKDYR-SKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (196)
Q Consensus 80 ~~~----~~~~i~~y~-~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (196)
... ...+..-|. ..=-++-...+...+.+.....-+. .......+-..|..|... ++ .+.|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----~~-----~~~A~ 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---HPDVAKQLNNLALLCQNQ-----GK-----YEEVE 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTT-----TC-----HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHc-----CC-----HHHHH
Confidence 000 001111111 0111233344444454443321111 122333334444443222 11 46789
Q ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 029240 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSE 194 (196)
Q Consensus 155 ~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~ 194 (196)
..|++|++++....++.+|.......+.+..++. +++.+
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~ 212 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK-QGKFK 212 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-HTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-cCCHH
Confidence 9999999999887788888887777777776654 34443
No 55
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=38.51 E-value=74 Score=20.10 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+.+..++.+....|+|++++....+++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356778899999999999999999999975
No 56
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=38.07 E-value=96 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
+..+|....+.|+|++++..+++++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~ 46 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCM 46 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455555555666666666555554
No 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.50 E-value=95 Score=22.49 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY 54 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ay 54 (196)
+-+..+|.+..+.|+|++++.+.++++.. .+-+.+=...+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=36.46 E-value=1.3e+02 Score=22.17 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
+.+..++.+..+.|+|++++.+..++++.. ++-+..-...+..+|-. .+....|...+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 66 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT---NNQDSVTAYNCGVCADN-IKKYKEAADYFD 66 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHH-hhcHHHHHHHHH
Confidence 677889999999999999999999999752 32344444445555543 455555666554
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=35.69 E-value=1.3e+02 Score=22.26 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..+|.+..+.|+|++++.+.+++++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566666666666666666666653
No 60
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=35.68 E-value=91 Score=20.31 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
-.-+..+|.+..+.|+|++.+.++++++... + -..+-...+..+|.. .+....+...+.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~~la~~~~~-~g~~~~A~~~~~ 77 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD---P-TYSVAWKWLGKTLQG-QGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---C-CcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3456678999999999999999999999752 3 334555666666654 355555555554
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=34.63 E-value=1.8e+02 Score=23.53 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
..+|.+..+.|+|++++..+.++++. .+-+..-...+..+|-. .+....+...+..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIK-EGEPRKAISDLKA 202 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCGGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44577788899999999999999875 23345556666666543 3455556555543
No 62
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=34.62 E-value=1.1e+02 Score=22.15 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++.+..+++... +-+..-...+..+|- ..+....|...+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANM-YFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHH-HcccHHHHHHHHHH
Confidence 345578888899999999999999998752 334555566666664 35556666666654
No 63
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=33.54 E-value=81 Score=19.09 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++.+.++++... +-+.+-...+..+|-. .+....+...+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~ 68 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYK-QGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 345678889999999999999999998752 2344445556666543 4556666666654
No 64
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=33.46 E-value=1e+02 Score=20.28 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
-+..++.+..+.|+|++++.+++++++.. |. +.+=...+..+|-. .+....|...+.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~ 85 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF---PN-HQALRVFYAMVLYN-LGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-CHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-chHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45678899999999999999999999763 33 35556666666654 455566666664
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=33.44 E-value=1.9e+02 Score=23.40 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++..+.+++... +-+.+-...+..+|-. .+....+...+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK----NDNTEAFYKISTLYYQ-LGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH----CSCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345677888889999999999999988652 2334555566666544 3555556666543
No 66
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=33.02 E-value=1.1e+02 Score=20.61 Aligned_cols=58 Identities=9% Similarity=-0.064 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
.....+|...-+.|+|++++..+++++.. .+-+.+=...+..+|-. .+....|...+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~ 75 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAE-NEKDGLAIIALN 75 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 35678888999999999999999999975 23356666677777653 455555555554
No 67
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.82 E-value=91 Score=30.70 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhh--hhHHHHHHHHH
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS--LRAAWRIISSI 71 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~--~R~s~R~l~~~ 71 (196)
...++|.++.+.|+-.+++-+..++..+ ++-..-...|.+.-||..+.- .-.|+-.|.+.
T Consensus 903 ~hv~~LFe~~~~~~~vi~fa~lAi~~~~--~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 903 LHLSKKLFEESAYIDALEFSLLADASKE--TDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 4567899999999999999999887532 232222445788888887644 44677777654
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=32.40 E-value=1.8e+02 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+....|+|++++.+.++++..
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 457888889999999999999887753
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=31.96 E-value=1.3e+02 Score=20.97 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
+..++.+..+.|+|++++.++.+++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~ 39 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALS 39 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445555555555555555544
No 70
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=31.78 E-value=1.7e+02 Score=22.39 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
..+|.+..+.|+|++++..++++++. .+-+.+-...+..+|-. .+....+...+..
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFIK-EGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 34588999999999999999999975 23445556666666544 3555566666654
No 71
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=31.61 E-value=1.1e+02 Score=20.68 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+..+.|++++.+.+.+++++.
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 54 WRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555543
No 72
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=31.01 E-value=1.2e+02 Score=22.08 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHH-H----HHHHHHHHHHHhhhccCCCCC-CCh
Q 029240 48 NLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVES-E----LSDVCGSILKLLDSHLVPSAT-AGE 121 (196)
Q Consensus 48 nLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~-E----L~~iC~eii~lid~~Lip~~~-~~e 121 (196)
+++|+||+. ++.+.++.-.+.|-.+-+++.+ + ...+|...-..|-++++-+.. -|+
T Consensus 10 ~~lS~AY~D------------------peVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~ 71 (111)
T 1tdp_A 10 LNLSEAYKD------------------PEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHTC------------------HHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHhCC------------------HhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcH
Confidence 577888876 2223455566677777777665 3 677788888888787766544 454
Q ss_pred h-HHHHHhhhc
Q 029240 122 S-KVFYLKMKG 131 (196)
Q Consensus 122 s-kvfy~Kmkg 131 (196)
+ -..|...+.
T Consensus 72 ali~L~~~I~k 82 (111)
T 1tdp_A 72 SMLTIYTQIQK 82 (111)
T ss_dssp GGTHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 4 335555554
No 73
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.98 E-value=97 Score=19.19 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..+|.+..+.|+|++++.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~ 35 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL 35 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344555555556666666666665543
No 74
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=29.99 E-value=1e+02 Score=19.20 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+.+..+|.+..+.|+|++.+.++.+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 33 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL 33 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 356778899999999999999999999875
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=29.39 E-value=1.2e+02 Score=19.90 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+....|+|++++.+..+.++.
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 38 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLI 38 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 467888888999999999999998864
No 76
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=28.97 E-value=1.1e+02 Score=19.36 Aligned_cols=62 Identities=8% Similarity=0.012 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQ 73 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~eq 73 (196)
.-+..+|.+..+.|+|++++.+..+++... +-+..-...+..+|-. .+....+...+.....
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID----PAYSKAYGRMGLALSS-LNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC----ccCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 445678999999999999999999998752 2335555666666644 4666677777754333
No 77
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=28.74 E-value=67 Score=20.90 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
.-...++.+..+.|+|++++.++++.++.
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34568899999999999999999998853
No 78
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=28.34 E-value=1.2e+02 Score=19.34 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+..+|.+..+.|+|++++.+++++++.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3557788899999999999999999875
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.32 E-value=1.4e+02 Score=20.32 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+..+.|+|++++.+.++++..
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345556666666666666666666654
No 80
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=28.25 E-value=1.9e+02 Score=21.72 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+....|+|++++.+..+++..
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457888899999999999999887753
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=28.19 E-value=2.2e+02 Score=22.41 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 69 (196)
+.++.+|....+.|+|++++.+.++++... + -+.+-...+..+|-. .+....|...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~~lg~~~~~-~g~~~~A~~~~~ 123 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD---P-GDAEAWQFLGITQAE-NENEQAAIVALQ 123 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---c-CCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 346777888888888888888888887642 2 234445555555543 334444444443
No 82
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=28.14 E-value=2.2e+02 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTSS 36 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~~ 36 (196)
-+-..+.+....|+|++++++..+.++..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~ 66 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34556777778888888888888777543
No 83
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.12 E-value=74 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
+++-.|--.+++|+|++++.+.+..++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566667788888888888877764
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=26.97 E-value=1.5e+02 Score=21.83 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 029240 12 LAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (196)
Q Consensus 12 ~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~~ 71 (196)
+|.+..+.|+|++++.+.+++++.. +=+.+-...+..+|-. .+....|...+...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a 114 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVC-RGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 8889999999999999999999762 3345666677777653 56667777776543
No 85
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.65 E-value=1.7e+02 Score=20.53 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 10 VYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 10 i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
..++.+....++|+.+.....+++.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555554
No 86
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=26.51 E-value=2.1e+02 Score=21.68 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 029240 150 AENTMLSYKAAQDIALTD 167 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~ 167 (196)
.+.|...|++|+++....
T Consensus 209 ~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 356888888888887643
No 87
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=25.74 E-value=1.3e+02 Score=18.81 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
.+.+|....+.|+|++++...+++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 29 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT 29 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 366788888999999999999999975
No 88
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=24.38 E-value=2.3e+02 Score=21.40 Aligned_cols=28 Identities=4% Similarity=-0.069 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
.++.+|....+.|+|++++...++++..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 50 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA 50 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455666666666666666666666543
No 89
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=24.36 E-value=2.2e+02 Score=21.09 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+..++.+..+.|+|++.+..+.+++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 34 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE 34 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666643
No 90
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.17 E-value=97 Score=20.81 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 8 ~~i~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
+++..|--.+++|+|++++.+.+..++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355666667788888888887777664
No 91
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=23.61 E-value=3.4e+02 Score=22.99 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhh
Q 029240 11 YLAKLAEQAERYEEMVKFMDSLVT 34 (196)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~i~ 34 (196)
.++.+..+.|++++++.++.++++
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555556666666666665554
No 92
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=23.46 E-value=2.8e+02 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 9 ~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
+..++.+....|+|++++.+.+++++.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 557888888999999999999888754
No 93
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=23.17 E-value=1.6e+02 Score=19.23 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=26.6
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029240 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (196)
Q Consensus 6 re~~i~~Aklaeq~ery~dm~~~mk~~i~~ 35 (196)
-+.+..++.+....|+|++++.++++++..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 38 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR 38 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 456788999999999999999999999975
No 94
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.97 E-value=4.4e+02 Score=24.08 Aligned_cols=73 Identities=19% Similarity=0.429 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCCHH---HHHHHH---HHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHH
Q 029240 20 ERYEEMVKFMDSLVTSSTPATELTVE---ERNLLS---VAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSK 93 (196)
Q Consensus 20 ery~dm~~~mk~~i~~~~~~~~Lt~e---ERnLls---~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~k 93 (196)
++|.+-++-+++++... .....+ |-.+|- .+|..++..-+..+..|..--++|+..-+.....++++||.+
T Consensus 121 ~k~g~~l~~v~~~~~~~---~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k 197 (526)
T 3iyk_A 121 EKFGKELEEVYNFMNGE---ANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDK 197 (526)
T ss_pred HHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 45666677777776421 233343 334554 456667777788888887666776655556667888888887
Q ss_pred HH
Q 029240 94 VE 95 (196)
Q Consensus 94 i~ 95 (196)
+.
T Consensus 198 ~~ 199 (526)
T 3iyk_A 198 ID 199 (526)
T ss_pred HH
Confidence 64
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=22.48 E-value=2.2e+02 Score=20.49 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS 70 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ 70 (196)
.-+..+|.+..+.|+|++++.++++++... + -+..-...+..+|-. .+....+...+..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~~~~la~~~~~-~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELD---S-SAATAYYGAGNVYVV-KEMYKEAKDMFEK 116 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T-TCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-cchHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 455677888888899999999988888652 2 234444445555443 3444555555543
No 96
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=22.26 E-value=51 Score=23.29 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=31.0
Q ss_pred cccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH----HHHHHHHHH
Q 029240 131 GDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFY 186 (196)
Q Consensus 131 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLg----L~LN~SVF~ 186 (196)
|+.--||-.+...-+ .-+..+.+..+.|++--+ ..|.||..|+ +.-+|++|+
T Consensus 12 ~~~~~~Ld~vs~~f~--~~a~~~~~~l~~Al~~L~--~~psNPa~LAe~Qa~lseynl~R 67 (92)
T 2g0u_A 12 YEWSGYLTGIGRAFD--DGVKDLNKQLQDAQANLT--KNPSDPTALANYQMIMSEYNLYR 67 (92)
T ss_dssp SSSTHHHHHHHGGGC--TTTHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHH--HHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Confidence 343345555443211 124556677777775443 6899999997 455677764
No 97
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=21.94 E-value=1.5e+02 Score=21.86 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCC
Q 029240 150 AENTMLSYKAAQDIALTDLAP 170 (196)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~l~p 170 (196)
-+.+..+|++|++ ..+||
T Consensus 108 E~~~~~~Y~~al~---~~lp~ 125 (153)
T 4etr_A 108 EDVAKHRYQAALE---KSLPA 125 (153)
T ss_dssp HHHHHHHHHHHHH---SCCCH
T ss_pred HHHHHHHHHHHHh---ccCCH
Confidence 3458889999987 24554
No 98
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=20.62 E-value=95 Score=21.98 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=34.2
Q ss_pred hHHHHHhhhcccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCccc
Q 029240 122 SKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEK 195 (196)
Q Consensus 122 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~ 195 (196)
..+..+-..|..|...-+ .+.|...|++|++++.. .+ .+|...+.+++.--..|-.+++.++
T Consensus 64 ~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGN----------WDAARRCFLEERELLAS-LP-EDPLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHH-cC-ccHHHHHHHHHHHHHHHHHhCCHHH
Confidence 344444555555544322 35688899999999873 33 3454445544443334444666554
No 99
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.40 E-value=1.4e+02 Score=27.39 Aligned_cols=54 Identities=17% Similarity=-0.010 Sum_probs=35.5
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCC
Q 029240 138 AEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNS 192 (196)
Q Consensus 138 aE~~~~~~~~~~~~~a~~aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~ 192 (196)
+|....+.-.+.+++|.++|++|.+..++--..-+|--.-..||-|= .||.-+|
T Consensus 436 ~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak-~yE~aGD 489 (526)
T 2wb7_A 436 AKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAK-KHEMAGD 489 (526)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH-HHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhh-hhhhccH
Confidence 45566666778899999999999999985333444443334444433 3776554
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=20.38 E-value=3e+02 Score=21.23 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----hhhhhhhhHHHHHHHH-Hhhhhhcccc
Q 029240 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY-----KNVIGSLRAAWRIISS-IEQKEEGRKN 80 (196)
Q Consensus 7 e~~i~~Aklaeq~ery~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ay-----Kn~i~~~R~s~R~l~~-~eq~~~~~~~ 80 (196)
+.+...+...-..|+|+++++..++.++.. +. ..+....+..-+ -...+..-.|...+.. ++........
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE---EY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc---cC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 344566777778899999999999888642 33 333322221111 1111233344444432 2111111100
Q ss_pred hhhH----HHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCCChhHHHHHhhhcccccchhhhccchhHHHHHHHHHH
Q 029240 81 EEHV----SLVKDYR-SKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTML 155 (196)
Q Consensus 81 ~~~~----~~i~~y~-~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 155 (196)
.... .+-.-|. ..=-++-...++..+++.+. .|. ++...+..+-..|..|..+- --+.|..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~--~~~~~~~~~~nlg~~y~~~~----------~y~~Al~ 217 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHD--NEEFDVKVRYNHAKALYLDS----------RYEESLY 217 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCC--CHHHHHHHHHHHHHHHHHTT----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCc--cccchHHHHHhHHHHHHHHh----------hHHHHHH
Confidence 0001 1111111 11123445566666665543 232 11112122233444443221 1467899
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCcccC
Q 029240 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKA 196 (196)
Q Consensus 156 aY~~A~~~a~~~l~p~~pirLgL~LN~SVF~yEi~~~~~~A 196 (196)
.|++|++++.. ..++..++.+++.--..|.-+++.++|
T Consensus 218 ~~~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 218 QVNKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999853 233444555554444555566666543
No 101
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=20.17 E-value=1.1e+02 Score=21.77 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhh
Q 029240 22 YEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKN 56 (196)
Q Consensus 22 y~dm~~~mk~~i~~~~~~~~Lt~eERnLls~ayKn 56 (196)
=.+|..+++.++.....+..|++++...|....+.
T Consensus 17 ~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~ 51 (104)
T 2k0m_A 17 KADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKR 51 (104)
T ss_dssp HHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHh
Confidence 35899999999865444688999999887766553
Done!