BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029242
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS
LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENV
KRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVR
IAQCVFPLYYCLAVDK

High Scoring Gene Products

Symbol, full name Information P value
PRA1.H
AT4G27540 		protein from Arabidopsis thaliana 5.6e-52

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029242
        (196 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2137692 - symbol:PRA1.H "AT4G27540" species:37...   539  5.6e-52   1


>TAIR|locus:2137692 [details] [associations]
            symbol:PRA1.H "AT4G27540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0016192 "vesicle-mediated
            transport" evidence=IDA] [GO:0006914 "autophagy" evidence=RCA]
            Pfam:PF03208 InterPro:IPR004895 GO:GO:0005783 GO:GO:0016021
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016192 GO:GO:0005789
            EMBL:AL161571 EMBL:AL035602 EMBL:BT025167 EMBL:AY084728
            IPI:IPI00539240 PIR:T05859 RefSeq:NP_567776.1 UniGene:At.32093
            UniGene:At.32094 EnsemblPlants:AT4G27540.1 GeneID:828863
            KEGG:ath:AT4G27540 TAIR:At4g27540 eggNOG:NOG291338
            HOGENOM:HOG000005764 InParanoid:Q8LFP1 OMA:FACTLYQ PhylomeDB:Q8LFP1
            ProtClustDB:CLSN2689642 Genevestigator:Q8LFP1 Uniprot:Q8LFP1
        Length = 241

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 105/194 (54%), Positives = 127/194 (65%)

Query:     5 FASNPLSLNVPDPAFESWLRDSGYLEILDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+VPDPAFESWLRDSGYLE+LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
               ++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182

Query:   171 YPVIRQVLVRIAQC 184
             +P +R++ + I QC
Sbjct:   183 HPSMRKLSIGIGQC 196


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.140   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       171   0.00090  108 3  11 22  0.45    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  179 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.65u 0.09s 15.74t   Elapsed:  00:00:08
  Total cpu time:  15.65u 0.09s 15.74t   Elapsed:  00:00:08
  Start:  Fri May 10 12:01:09 2013   End:  Fri May 10 12:01:17 2013

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