BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029242
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
Length = 241
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 14/194 (7%)
Query: 5 FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
F+ NPLSL+VPDPAFESWLRDSGYLE+LD T+ +A A +++++ ++
Sbjct: 3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62
Query: 55 TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
++IT SLL L T SLLT+NPF+KL+ DDFS T WT FIG SYSFPSS
Sbjct: 63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122
Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDR 170
++RVHEN+KR+ARNYA+LFI+FFAC+LYQMPLALVGL+ SLALW+ FK+CSDKW +DR
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDKWKFDR 182
Query: 171 YPVIRQVLVRIAQC 184
+P +R++ + I QC
Sbjct: 183 HPSMRKLSIGIGQC 196
>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
Length = 182
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 100 LGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFF 159
L ++SFPSS RV +N+ + NY+ + + +L P+A++ I+ W F
Sbjct: 29 LSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFL 88
Query: 160 KFCSDK 165
F ++
Sbjct: 89 YFAREE 94
>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
PE=3 SV=1
Length = 390
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 19 FESWLRDSG-YLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPF 77
FE+W +D + + D +V + S K T +T TH L Y + F L +PF
Sbjct: 204 FENWCQDENRHGDFFDALMKAQPRSVKSLSNKITIGGSTFTHPLFDYFHRFRYFLNNHPF 263
>sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Coprinellus disseminatus
GN=OCT1 PE=3 SV=1
Length = 773
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 43 VTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGS 102
+ AS T ++ +LL L+ FA LT DD AKTP F+ AL
Sbjct: 297 IYIASNSSTPEQISVLEALLRKRAELAQLIGRPSFAHLTLDDKMAKTPENVSNFLDALMD 356
Query: 103 YSFP---SSPHTLKLR--VHENV 120
++ P + HTL R H N+
Sbjct: 357 HTRPFARRALHTLAQRKQAHHNL 379
>sp|Q9ZWD1|PR1G1_ARATH PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1
Length = 187
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 92 WTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLIS 151
W EF+ A GS PSS RV N+ +A NY L L P+ALV + S
Sbjct: 40 WWSEFL-AFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMALVTVAS 98
Query: 152 SLALWDFFKFCSDK 165
+A+W F D
Sbjct: 99 FVAMWLLLYFYRDH 112
>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 94 REFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVG 148
R F ++FP S K R+ N+ Y NY L I +L PLALVG
Sbjct: 25 RSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVG 79
>sp|A4T8J9|ATPFD_MYCGI ATP synthase subunit b-delta OS=Mycobacterium gilvum (strain
PYR-GCK) GN=atpFH PE=3 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 44 TTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSY 103
+ A ++ T TT+ L +S T+N TDD +AKT R F G LGS
Sbjct: 189 SVADGADSDTLTTVADELSGVAKVLLSETTLNKHLAEPTDDSTAKTRLVERLFDGKLGSN 248
Query: 104 SFP 106
S
Sbjct: 249 SLE 251
>sp|Q6VMB4|PMIP_LEUGO Mitochondrial intermediate peptidase OS=Leucoagaricus gongylophorus
GN=OCT1 PE=3 SV=1
Length = 760
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 46 ASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSF 105
A+ T LL L+ + FA +T DD AKTP F+GAL +
Sbjct: 286 AANSSTDQQIXTLERLLKTRAELARLVGRSSFAHMTLDDKMAKTPENVMNFLGALIGQTR 345
Query: 106 PSSPHTLK 113
P + LK
Sbjct: 346 PFARRALK 353
>sp|Q42556|PMA9_ARATH ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2
SV=2
Length = 954
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 65 LYTFISLLTVNPF-AKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRY 123
L T+++++TV F A +TD FSAK G S +PH L V+ V
Sbjct: 721 LGTYLAVMTVVFFWAAESTDFFSAK-----------FGVRSISGNPHELTAAVYLQVSIV 769
Query: 124 ARNYASLFIL------------FFACSLYQMPLALVGLISSLALWDFFKFCSDKWNW 168
++ A +F+ F+ S + M + LI+ A W+F + W W
Sbjct: 770 SQ--ALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGW 824
>sp|Q9FH16|PR1G2_ARATH PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 101 GSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQM----PLALVGLISSLALW 156
G +S P S +L LR N + NY I+ C+ + + P+AL+ + + +ALW
Sbjct: 45 GDFSLPESFSSLLLRSKTNFNYFFVNYT---IIVSTCAAFALITASPVALIVVGAIIALW 101
Query: 157 DFFKF 161
F F
Sbjct: 102 LIFHF 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,850,477
Number of Sequences: 539616
Number of extensions: 2473122
Number of successful extensions: 11877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11199
Number of HSP's gapped (non-prelim): 531
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)