Query 029242
Match_columns 196
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3142 Prenylated rab accepto 99.9 1.1E-24 2.3E-29 183.7 7.6 83 81-165 29-111 (187)
2 PF03208 PRA1: PRA1 family pro 99.8 4.8E-20 1E-24 144.7 9.2 86 86-173 5-93 (153)
3 COG5130 YIP3 Prenylated rab ac 98.3 1.4E-06 3.1E-11 72.9 6.7 68 95-163 34-101 (169)
4 KOG4050 Glutamate transporter 93.1 0.53 1.2E-05 40.6 7.8 80 88-168 18-110 (188)
5 COG4420 Predicted membrane pro 53.1 38 0.00082 29.7 5.6 50 114-179 45-95 (191)
6 COG5144 TFB2 RNA polymerase II 45.8 6.6 0.00014 37.5 -0.1 28 1-32 48-75 (447)
7 PF04140 ICMT: Isoprenylcystei 44.7 72 0.0016 23.9 5.4 36 126-163 48-86 (94)
8 TIGR00779 cad cadmium resistan 42.8 29 0.00063 30.1 3.4 50 136-190 122-171 (193)
9 PRK05305 phosphatidylserine de 42.5 36 0.00077 28.8 3.8 37 126-165 8-45 (206)
10 PF14257 DUF4349: Domain of un 38.0 80 0.0017 27.1 5.3 24 10-33 98-121 (262)
11 PF01124 MAPEG: MAPEG family; 37.5 1.2E+02 0.0026 22.2 5.5 49 105-153 40-88 (129)
12 PF11241 DUF3043: Protein of u 37.1 77 0.0017 27.1 5.0 21 117-137 74-94 (170)
13 KOG2203 GTP-binding protein [G 35.8 76 0.0016 32.7 5.4 76 109-189 654-737 (772)
14 PF05879 RHD3: Root hair defec 35.8 1E+02 0.0023 31.2 6.4 40 127-167 652-695 (742)
15 PRK13707 conjugal transfer pil 32.4 1.4E+02 0.003 23.2 5.3 58 101-168 7-68 (101)
16 PF07178 TraL: TraL protein; 32.1 1.5E+02 0.0033 22.2 5.4 25 143-167 37-61 (95)
17 COG2059 ChrA Chromate transpor 31.0 1.7E+02 0.0037 25.2 6.2 51 109-159 126-178 (195)
18 PF15013 CCSMST1: CCSMST1 fami 30.7 30 0.00065 26.2 1.4 29 140-170 30-58 (77)
19 PF05620 DUF788: Protein of un 29.0 3.3E+02 0.0071 22.4 7.4 21 111-131 5-25 (170)
20 COG4965 TadB Flp pilus assembl 28.3 2.6E+02 0.0056 26.1 7.2 86 103-188 58-155 (309)
21 PF04191 PEMT: Phospholipid me 27.5 1.3E+02 0.0028 21.7 4.3 51 116-166 43-96 (106)
22 PF08260 Kinin: Insect kinin p 26.8 15 0.00032 17.5 -0.5 7 16-22 1-7 (8)
23 PF06388 DUF1075: Protein of u 25.5 1.2E+02 0.0026 25.5 4.2 56 81-139 54-109 (146)
24 PF04530 Viral_Beta_CD: Viral 25.1 1E+02 0.0022 25.4 3.6 18 120-137 44-61 (122)
25 PF12911 OppC_N: N-terminal TM 24.6 87 0.0019 20.6 2.7 24 115-138 4-27 (56)
26 PF13231 PMT_2: Dolichyl-phosp 24.5 1.8E+02 0.004 21.4 4.7 33 127-160 100-132 (159)
27 cd05133 RasGAP_IQGAP1 IQGAP1 i 23.7 5.5E+02 0.012 24.1 8.6 78 110-188 113-223 (360)
28 PF03374 ANT: Phage antirepres 23.5 43 0.00094 24.8 1.1 20 12-31 34-53 (111)
29 COG5594 Uncharacterized integr 22.4 1.2E+02 0.0027 31.8 4.4 45 127-177 413-463 (827)
30 PF10864 DUF2663: Protein of u 22.2 4.1E+02 0.0089 21.9 6.6 29 137-165 52-80 (130)
31 PRK11176 lipid transporter ATP 21.7 4.3E+02 0.0093 24.9 7.5 60 106-165 118-188 (582)
32 PRK09459 pspG phage shock prot 21.1 1.8E+02 0.0038 22.3 4.0 29 128-156 3-31 (76)
33 PF12273 RCR: Chitin synthesis 20.9 75 0.0016 24.8 2.0 16 147-162 6-21 (130)
34 COG5478 Predicted small integr 20.7 1.7E+02 0.0037 24.7 4.1 42 139-180 16-60 (141)
35 COG0368 CobS Cobalamin-5-phosp 20.7 2.4E+02 0.0051 25.1 5.3 113 49-168 101-218 (246)
36 PF11639 HapK: REDY-like prote 20.5 36 0.00078 27.3 0.2 16 13-28 13-28 (104)
37 PF03596 Cad: Cadmium resistan 20.2 1.2E+02 0.0027 26.0 3.4 47 137-188 123-169 (191)
No 1
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-24 Score=183.66 Aligned_cols=83 Identities=27% Similarity=0.486 Sum_probs=78.0
Q ss_pred cccccCCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 029242 81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFK 160 (196)
Q Consensus 81 Tt~dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLy 160 (196)
+..+=..+.|||+ ||+|. +++|+|+|++||.+||+.|+.||+.||+++++++.+.+|+|||++||++++.+++|.++|
T Consensus 29 ~~~~~lst~RpW~-ef~d~-~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P~~Livl~~lv~~w~~LY 106 (187)
T KOG3142|consen 29 TIQSGLSTRRPWS-EFFDR-SAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHPLSLIVLLALVAAWLFLY 106 (187)
T ss_pred HHHHHHhccCCHH-HHHcc-cccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhee
Confidence 4445567899999 99996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc
Q 029242 161 FCSDK 165 (196)
Q Consensus 161 FlRDe 165 (196)
|+|||
T Consensus 107 ~~rd~ 111 (187)
T KOG3142|consen 107 FLRDE 111 (187)
T ss_pred eecCC
Confidence 99964
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.82 E-value=4.8e-20 Score=144.75 Aligned_cols=86 Identities=27% Similarity=0.459 Sum_probs=78.2
Q ss_pred CCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc-
Q 029242 86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSD- 164 (196)
Q Consensus 86 ~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRD- 164 (196)
..+.|||+ ||+|. ++|+.|++.+|+..|+++|+.||+.||.++++++++++++++|+.+++++.+.++|.+++..++
T Consensus 5 ~~~~Rpw~-eF~~~-~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03208_consen 5 LSPLRPWR-EFFDT-SRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRKE 82 (153)
T ss_pred cCCCCCHH-HHhCc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46899998 99986 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --ccCccchhH
Q 029242 165 --KWNWDRYPV 173 (196)
Q Consensus 165 --ew~l~~~p~ 173 (196)
.+.+.....
T Consensus 83 ~~~~~~~~~~~ 93 (153)
T PF03208_consen 83 NDPIVIGGRKI 93 (153)
T ss_pred CcchhccCccc
Confidence 555533333
No 3
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=98.33 E-value=1.4e-06 Score=72.94 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=59.4
Q ss_pred hhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 029242 95 EFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCS 163 (196)
Q Consensus 95 eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlR 163 (196)
||++. +-.|.|.+++||.+||-.|+.||..||-.++.++..-.|++.|.-||+.....+.=.-.+-+|
T Consensus 34 eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~ 101 (169)
T COG5130 34 EFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR 101 (169)
T ss_pred HHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence 99997 999999999999999999999999999999999999999999998888776666554444454
No 4
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=93.11 E-value=0.53 Score=40.63 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=55.1
Q ss_pred CCCCcchhhhccccccCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH--HHHHH-
Q 029242 88 KTPSWTREFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPL----ALVGLISSL--ALWDF- 158 (196)
Q Consensus 88 ~~rPWr~eFl~~~~SyS~P~--S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPi----ALI~~la~~--~~W~f- 158 (196)
|-|-|- +|+-.+.-|..|. -++.=-.||-.|+-||+.||...++..+.+.-+-.|. ++|+....+ .+|.+
T Consensus 18 PlRa~d-dF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa~~ 96 (188)
T KOG4050|consen 18 PLRALD-DFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWAAS 96 (188)
T ss_pred cchhHH-HhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677 7764456677775 4677778999999999999999999999888888775 333333333 45654
Q ss_pred ----HHHhhcccCc
Q 029242 159 ----FKFCSDKWNW 168 (196)
Q Consensus 159 ----LyFlRDew~l 168 (196)
.+.+|.+.++
T Consensus 97 ~~a~~krmr~~hp~ 110 (188)
T KOG4050|consen 97 ADANIKRMRTDHPL 110 (188)
T ss_pred ccHHHHHHhhcCcH
Confidence 4555543333
No 5
>COG4420 Predicted membrane protein [Function unknown]
Probab=53.06 E-value=38 Score=29.70 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc-cCccchhHHHHHHH
Q 029242 114 LRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDK-WNWDRYPVIRQVLV 179 (196)
Q Consensus 114 ~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRDe-w~l~~~p~~~~~l~ 179 (196)
.|+-+|+.+|.+-.++|+..++ .+++|.++.-.--- +.||-||++.=-|+
T Consensus 45 dR~ad~ia~f~Gsw~fil~~~~----------------~ll~Wi~lNl~~~~~~~wDpyPFi~LnLl 95 (191)
T COG4420 45 DRVADKIARFGGSWAFILTFTL----------------LLLLWIVLNLFLVPGLAWDPYPFILLNLL 95 (191)
T ss_pred hhHHHHHHHHcCChHHHHHHHH----------------HHHHHHHHHHhhhcCCcCCCccHHHHHHH
Confidence 4899999999998877655443 44566666544332 78899999864443
No 6
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=45.75 E-value=6.6 Score=37.53 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCCcccCCCcccccCchHHHHHhhhcCchhHh
Q 029242 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLEIL 32 (196)
Q Consensus 1 mgm~F~~NPLSLsvp~~afe~Wlrdsg~le~l 32 (196)
|.|.|++||.||+ +++.|.+.++-+-..
T Consensus 48 m~mlfn~~~v~ll----d~d~wik~~~Ki~~~ 75 (447)
T COG5144 48 MDMLFNSHSVSLL----DEDEWIKETLKILLR 75 (447)
T ss_pred HHHHcCCCCcchh----hHHHHHhhhhHHHHH
Confidence 7799999988775 899999999865443
No 7
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=44.72 E-value=72 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHH-HHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhh
Q 029242 126 NYAS-LFILFFACSLYQMP--LALVGLISSLALWDFFKFCS 163 (196)
Q Consensus 126 NYai-vvl~v~~lsLy~hP--iALI~~la~~~~W~fLyFlR 163 (196)
||+. ++..+....|+.+| ++++.++ +.+|.++...+
T Consensus 48 ~Y~g~~~~~~~~~~ll~~~~~~~~~~~~--~~~~~l~~RI~ 86 (94)
T PF04140_consen 48 SYLGNIIWELGGQLLLFNAWLTALILFA--LVAWLLFVRIR 86 (94)
T ss_dssp HHHH-HHHHHHHHHHHHT-HHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHH
Confidence 7887 55666777888888 5555444 34444444444
No 8
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=42.83 E-value=29 Score=30.07 Aligned_cols=50 Identities=14% Similarity=0.378 Sum_probs=39.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHhhcccceee
Q 029242 136 ACSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPLYY 190 (196)
Q Consensus 136 ~lsLy~hPiALI~~la~~~~W~fLyFlRDew~l~~~p~~~~~l~~~~q~~~~~~~ 190 (196)
-.++-..++.+++|+.+.++|+++- +.+.++|.+.+.+-|-+....+++|
T Consensus 122 ~~s~~~l~v~livF~ilv~vwc~~a-----~~l~~~p~I~~~leryg~~lvp~Vl 171 (193)
T TIGR00779 122 TLSMTNLLLTLIVFLIMVFFLCFTA-----YRLANFPGISETVEKYSRWIMPIVF 171 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCchHHHHHHHhCCeeeeeeE
Confidence 3445566788899999999998876 5688999999999888877666644
No 9
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=42.50 E-value=36 Score=28.84 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 029242 126 NYASLFILFFACS-LYQMPLALVGLISSLALWDFFKFCSDK 165 (196)
Q Consensus 126 NYaivvl~v~~ls-Ly~hPiALI~~la~~~~W~fLyFlRDe 165 (196)
.|.++.++++++. +.+.+++.+.++. .+ .++||+||.
T Consensus 8 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ffRdp 45 (206)
T PRK05305 8 PFIAAAALVLLILGLLWWPLAWIGLLL--TL-FCLYFFRDP 45 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHheecCC
Confidence 4555555444442 3344555544332 22 347899994
No 10
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=38.04 E-value=80 Score=27.10 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=16.7
Q ss_pred cccccCchHHHHHhhhcCchhHhh
Q 029242 10 LSLNVPDPAFESWLRDSGYLEILD 33 (196)
Q Consensus 10 LSLsvp~~afe~Wlrdsg~le~ld 33 (196)
|.+-||...|+..+.+=+-+..++
T Consensus 98 ltiRVP~~~~~~~l~~l~~~g~v~ 121 (262)
T PF14257_consen 98 LTIRVPADKFDSFLDELSELGKVT 121 (262)
T ss_pred EEEEECHHHHHHHHHHHhccCcee
Confidence 667889999988877655443333
No 11
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=37.48 E-value=1.2e+02 Score=22.17 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 029242 105 FPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSL 153 (196)
Q Consensus 105 ~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~ 153 (196)
.++...+...|.+.......+|+.+.+++++.+.+...|..++..++..
T Consensus 40 ~~~~~~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~~~~~~l~~~ 88 (129)
T PF01124_consen 40 NPPTLPPWLERAQRAHQNFLENLPLFLVAVLLAILTGASPSLAALLAWV 88 (129)
T ss_dssp STTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-HHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3455566677777777778899999998888888886665555544443
No 12
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=37.14 E-value=77 Score=27.11 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029242 117 HENVKRYARNYASLFILFFAC 137 (196)
Q Consensus 117 ~~Nl~~F~~NYaivvl~v~~l 137 (196)
+-|+..|.+=-+++++++.++
T Consensus 74 R~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 74 RRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 346666666655555555544
No 13
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=35.83 E-value=76 Score=32.67 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHH----HHHHHHHHHHhhcccCccchhHHHHHHHH
Q 029242 109 PHTLKLRVHENVKRYARNYASLFILFF----ACSLYQMPLALVGLIS----SLALWDFFKFCSDKWNWDRYPVIRQVLVR 180 (196)
Q Consensus 109 ~~eA~~RV~~Nl~~F~~NYaivvl~v~----~lsLy~hPiALI~~la----~~~~W~fLyFlRDew~l~~~p~~~~~l~~ 180 (196)
..++..|--.|-.-.-==|+++.++|+ |..|++.|+=+.++.+ ..++|.+ -.||+-|+|++-.++-.
T Consensus 654 v~~d~k~s~~nt~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~~~~l~~q-----~~i~ef~~~vl~~~~s~ 728 (772)
T KOG2203|consen 654 VTQDIKRSEINTNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLVSKALWVQ-----GLIPEFQNGVLPGVLSI 728 (772)
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHHHHHHHHh-----ccchhhhcchhHHHHHH
Confidence 456666666662222222888888887 6899999987665544 4455543 34677789999888888
Q ss_pred Hhhccccee
Q 029242 181 IAQCVFPLY 189 (196)
Q Consensus 181 ~~q~~~~~~ 189 (196)
.++..|.+|
T Consensus 729 ~~k~~~tv~ 737 (772)
T KOG2203|consen 729 SGKFRTTVM 737 (772)
T ss_pred HHHHHHHHH
Confidence 887777663
No 14
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=35.76 E-value=1e+02 Score=31.23 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.6
Q ss_pred HHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 029242 127 YASLFILFF----ACSLYQMPLALVGLISSLALWDFFKFCSDKWN 167 (196)
Q Consensus 127 Yaivvl~v~----~lsLy~hPiALI~~la~~~~W~fLyFlRDew~ 167 (196)
|++++++++ ++.++++|+-++.+++++++-.++| --|-||
T Consensus 652 w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~-~l~l~~ 695 (742)
T PF05879_consen 652 WMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY-QLNLWG 695 (742)
T ss_pred HHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH-Hhcchh
Confidence 777777777 6899999999999999988877777 556666
No 15
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=32.42 E-value=1.4e+02 Score=23.23 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=34.5
Q ss_pred cccCCCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCc
Q 029242 101 GSYSFPSSPHTLK----LRVHENVKRYARNYASLFILFFACSLYQMPLALVGLISSLALWDFFKFCSDKWNW 168 (196)
Q Consensus 101 ~SyS~P~S~~eA~----~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~la~~~~W~fLyFlRDew~l 168 (196)
..|.+|++++|=. ..++| ++++++. ++..+..=..++|+++.+++|..++.+.+.-|-
T Consensus 7 ~~y~~P~~Ld~~~ri~~~~~DE---------~~~~~~~-~~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 7 DKYRFPETLTNQSRWFGLPLDE---------LIPAAIC-IGWGITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred ccccCCCccCCCCeEEeeeHHH---------HHHHHHH-HHHHHHHchHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4566777765532 23343 2333333 333333334788888999999999988876553
No 16
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=32.14 E-value=1.5e+02 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Q 029242 143 PLALVGLISSLALWDFFKFCSDKWN 167 (196)
Q Consensus 143 PiALI~~la~~~~W~fLyFlRDew~ 167 (196)
--.++++++.+++|...+.+++.-+
T Consensus 37 ~~~~~g~i~g~~~~~~~~k~K~~~~ 61 (95)
T PF07178_consen 37 GHFLIGLILGIVLWWGYRKFKKGRG 61 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCC
Confidence 3367888889999988888887654
No 17
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=31.03 E-value=1.7e+02 Score=25.23 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Q 029242 109 PHTLKLRVHENVKRYARNYASLFILFFACSLYQMPLA--LVGLISSLALWDFF 159 (196)
Q Consensus 109 ~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiA--LI~~la~~~~W~fL 159 (196)
+.++.-|+-+|....+.|..++++.+++..++.-+.. ++.+++.++.|.+.
T Consensus 126 v~~~~~~l~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~vIi~agl~~~~~~ 178 (195)
T COG2059 126 VLQAVWRLGKKALKGRGWVGLAVLTVIAILLLPTKFVHPLVIILAGLLGWLLG 178 (195)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Confidence 5688889999999999999999999988888875555 67777777777665
No 18
>PF15013 CCSMST1: CCSMST1 family
Probab=30.72 E-value=30 Score=26.20 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccCccc
Q 029242 140 YQMPLALVGLISSLALWDFFKFCSDKWNWDR 170 (196)
Q Consensus 140 y~hPiALI~~la~~~~W~fLyFlRDew~l~~ 170 (196)
.|.|..+.+.++.+.+|.. |+|+|-.+|+
T Consensus 30 Wyq~~~is~sl~~fliyFC--~lReEnDiD~ 58 (77)
T PF15013_consen 30 WYQVYPISLSLAAFLIYFC--FLREENDIDR 58 (77)
T ss_pred ceeeehhHHHHHHHHHHHh--hccccccHHH
Confidence 4567777777788888843 6899999987
No 19
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=28.99 E-value=3.3e+02 Score=22.40 Aligned_cols=21 Identities=14% Similarity=-0.107 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029242 111 TLKLRVHENVKRYARNYASLF 131 (196)
Q Consensus 111 eA~~RV~~Nl~~F~~NYaivv 131 (196)
-++.|.++|.+.-+.-+.+++
T Consensus 5 s~Kk~a~~N~~~l~~l~~~~~ 25 (170)
T PF05620_consen 5 SAKKIAEENKATLKFLRLISL 25 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999887654444333
No 20
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=28.29 E-value=2.6e+02 Score=26.05 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=57.7
Q ss_pred cCCCCChHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHhhccc--Cc-cc
Q 029242 103 YSFPSSPHTLKLR------VHENVKRYARNYASLFILFFACSLYQMPLALVG---LISSLALWDFFKFCSDKW--NW-DR 170 (196)
Q Consensus 103 yS~P~S~~eA~~R------V~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~---~la~~~~W~fLyFlRDew--~l-~~ 170 (196)
++.|.++.+.-.| .+.|+.+|..=-....+++..+.++++|+-... ..+++..|+.+.++|++= .. ++
T Consensus 58 ~~~~~~l~~~~~~~~~q~G~~~~~~~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~~~~~~rr~krf~~q 137 (309)
T COG4965 58 LSAQDSLKRLDRKQPRQAGLRVSLARLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVLRSRRARRLKRFGQQ 137 (309)
T ss_pred ccccchhhhHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555 345777777766666677777777777654333 335566777888888643 22 77
Q ss_pred hhHHHHHHHHHhhcccce
Q 029242 171 YPVIRQVLVRIAQCVFPL 188 (196)
Q Consensus 171 ~p~~~~~l~~~~q~~~~~ 188 (196)
.|-..+++++-.+.|-.+
T Consensus 138 lP~aLdlivr~l~aG~~l 155 (309)
T COG4965 138 LPEALDLIVRALRAGAPL 155 (309)
T ss_pred hhHHHHHHHHHhhCCCCH
Confidence 999999999888777665
No 21
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=27.49 E-value=1.3e+02 Score=21.66 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhccc
Q 029242 116 VHENVKRYARN--YASLFILFFACSLYQ-MPLALVGLISSLALWDFFKFCSDKW 166 (196)
Q Consensus 116 V~~Nl~~F~~N--Yaivvl~v~~lsLy~-hPiALI~~la~~~~W~fLyFlRDew 166 (196)
|.+=..++.+| |.-..++++.++|.. .+..++..+..........-..||-
T Consensus 43 vt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~~~~~~~~EE~ 96 (106)
T PF04191_consen 43 VTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLYYIFIIRFEER 96 (106)
T ss_pred cccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33334455555 666777777777775 5665555544444443333333443
No 22
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=26.81 E-value=15 Score=17.47 Aligned_cols=7 Identities=86% Similarity=1.853 Sum_probs=5.1
Q ss_pred chHHHHH
Q 029242 16 DPAFESW 22 (196)
Q Consensus 16 ~~afe~W 22 (196)
+|+|.+|
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 5777777
No 23
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=25.52 E-value=1.2e+02 Score=25.49 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=40.1
Q ss_pred cccccCCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029242 81 TTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSL 139 (196)
Q Consensus 81 Tt~dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~NYaivvl~v~~lsL 139 (196)
...|+-+..-=|++.|=. .=-+|..++.-..---.|-.|-..||.+|.+.|+.|.+
T Consensus 54 ~pt~~dKkiLvwtgrfKs---~~eIPe~Vs~e~l~~arnk~RIkv~~~Mi~lTiiGc~~ 109 (146)
T PF06388_consen 54 KPTDFDKKILVWTGRFKS---EEEIPETVSFEMLDAARNKARIKVCYIMIALTIIGCIA 109 (146)
T ss_pred CCcchhhhhhhhccccCC---hhhCcCccCHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 345555555556633321 12379999888888888999999999999999888854
No 24
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=25.15 E-value=1e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029242 120 VKRYARNYASLFILFFAC 137 (196)
Q Consensus 120 l~~F~~NYaivvl~v~~l 137 (196)
++-|..||.+++..+..+
T Consensus 44 ~sv~~~~y~l~~~~v~~L 61 (122)
T PF04530_consen 44 LSVLNDNYVLFVCAVCML 61 (122)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 777999999887766555
No 25
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.62 E-value=87 Score=20.58 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029242 115 RVHENVKRYARNYASLFILFFACS 138 (196)
Q Consensus 115 RV~~Nl~~F~~NYaivvl~v~~ls 138 (196)
+-++-.++|++|-..++-+++++.
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH
Confidence 356778888888888777766553
No 26
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=24.45 E-value=1.8e+02 Score=21.43 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 029242 127 YASLFILFFACSLYQMPLALVGLISSLALWDFFK 160 (196)
Q Consensus 127 Yaivvl~v~~lsLy~hPiALI~~la~~~~W~fLy 160 (196)
+.++..+++.++.+-|+..++..++... +...+
T Consensus 100 ~~~~~~l~~~l~~~~k~~~~~~~~~~~~-~l~~~ 132 (159)
T PF13231_consen 100 WWILAGLLLGLAFLTKYTFLLLIPALLL-YLLLS 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3366777777777777777666555444 44444
No 27
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=23.73 E-value=5.5e+02 Score=24.14 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------------HHHHHHHHHHHHhh------
Q 029242 110 HTLKLRVHENVKRYARNYASLFILFFACSLYQMPLALVGL--------------------ISSLALWDFFKFCS------ 163 (196)
Q Consensus 110 ~eA~~RV~~Nl~~F~~NYaivvl~v~~lsLy~hPiALI~~--------------------la~~~~W~fLyFlR------ 163 (196)
.|.+.|+.+|+.. -+.++--|+--+.-|+-++|.++--+ +..++.|.|++|+.
T Consensus 113 peV~~~~~~~l~~-Lr~i~~~fl~~I~~S~~~~P~~iR~ick~i~~~~~~kFP~~~~~~i~~~vG~fiflRfi~PAIvsP 191 (360)
T cd05133 113 EEVRTRLDASIRN-MRTVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIVGNLLYYRYMNPAIVAP 191 (360)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhCCHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHhccccccCc
Confidence 4556666677655 45566667777778888888877533 57889999999987
Q ss_pred cccCc-cc------hhHHHHHHHHHhhcccce
Q 029242 164 DKWNW-DR------YPVIRQVLVRIAQCVFPL 188 (196)
Q Consensus 164 Dew~l-~~------~p~~~~~l~~~~q~~~~~ 188 (196)
|.+|+ ++ .|-.|+-|..+||+...+
T Consensus 192 e~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~l 223 (360)
T cd05133 192 DAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHA 223 (360)
T ss_pred hhcCccccccCCCCCHHHHhhHHHHHHHHHHH
Confidence 78888 42 566899999999776554
No 28
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=23.53 E-value=43 Score=24.85 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.1
Q ss_pred cccCchHHHHHhhhcCchhH
Q 029242 12 LNVPDPAFESWLRDSGYLEI 31 (196)
Q Consensus 12 Lsvp~~afe~Wlrdsg~le~ 31 (196)
|.+++..|-+||||.|++-.
T Consensus 34 L~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 34 LGIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred hCCCHHHHHHHHHhCCceEE
Confidence 47788999999999999654
No 29
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.36 E-value=1.2e+02 Score=31.76 Aligned_cols=45 Identities=29% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhcccCc-----cchhHHHHH
Q 029242 127 YASLFILFFACSLYQ-MPLALVGLISSLALWDFFKFCSDKWNW-----DRYPVIRQV 177 (196)
Q Consensus 127 Yaivvl~v~~lsLy~-hPiALI~~la~~~~W~fLyFlRDew~l-----~~~p~~~~~ 177 (196)
+.+..++++++.+.| -|+|.||.+. =++.++++|++ .++|.++-+
T Consensus 413 ~~~~ni~~il~II~w~~pVa~v~~i~------Nl~~l~~~~p~l~~il~~~~~l~~i 463 (827)
T COG5594 413 RISANILFILLIILWAFPVAFVGTIS------NLNTLSSLWPFLKFILKDPPFLAGI 463 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------cchhHhhhhHHHHHHHhccHHHHHH
Confidence 333334444444444 8999998876 45677888865 345554443
No 30
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=22.20 E-value=4.1e+02 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 029242 137 CSLYQMPLALVGLISSLALWDFFKFCSDK 165 (196)
Q Consensus 137 lsLy~hPiALI~~la~~~~W~fLyFlRDe 165 (196)
-.+..+|+-|..+++.++++...++++++
T Consensus 52 s~~~~~~~~l~~ll~~~~~~~~~~~~~kK 80 (130)
T PF10864_consen 52 SAILGSPVHLFWLLALAFSYWAMYYLKKK 80 (130)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557889999999999999999998864
No 31
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=21.69 E-value=4.3e+02 Score=24.87 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcc
Q 029242 106 PSSPHTLKLRVHENVKRYARNYASLF----------ILFFACSLYQM-PLALVGLISSLALWDFFKFCSDK 165 (196)
Q Consensus 106 P~S~~eA~~RV~~Nl~~F~~NYaivv----------l~v~~lsLy~h-PiALI~~la~~~~W~fLyFlRDe 165 (196)
..+.+|...|+.+++.....+|...+ ++.+...++.+ +++++.++.+...+...++...+
T Consensus 118 ~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~ 188 (582)
T PRK11176 118 KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKR 188 (582)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888877776666654211 11111212223 45666666655556666555543
No 32
>PRK09459 pspG phage shock protein G; Reviewed
Probab=21.08 E-value=1.8e+02 Score=22.27 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 029242 128 ASLFILFFACSLYQMPLALVGLISSLALW 156 (196)
Q Consensus 128 aivvl~v~~lsLy~hPiALI~~la~~~~W 156 (196)
.+++++.|+..|+--=++++|.++.+++=
T Consensus 3 EllFvl~F~~~LlvTGiSllgv~aAl~va 31 (76)
T PRK09459 3 ELLFVIGFFVMLLVTGISLLGIIAALGVA 31 (76)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788888888888888888777665543
No 33
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.86 E-value=75 Score=24.80 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 029242 147 VGLISSLALWDFFKFC 162 (196)
Q Consensus 147 I~~la~~~~W~fLyFl 162 (196)
+++|+++++++++.+|
T Consensus 6 ~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555444
No 34
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=20.72 E-value=1.7e+02 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=34.5
Q ss_pred HhhhhHHHHHHHHHHHHHHH---HHHhhcccCccchhHHHHHHHH
Q 029242 139 LYQMPLALVGLISSLALWDF---FKFCSDKWNWDRYPVIRQVLVR 180 (196)
Q Consensus 139 Ly~hPiALI~~la~~~~W~f---LyFlRDew~l~~~p~~~~~l~~ 180 (196)
....|.+++++++.+.+|.- |.=+.|.|.+-.+-.+-..++-
T Consensus 16 ~~g~p~~fvv~~~~i~vw~~~gpl~~fsdtWQl~int~vaii~~l 60 (141)
T COG5478 16 FLGRPPAFVVALVAILVWAGSGPLFGFSDTWQLVINTSVAIITFL 60 (141)
T ss_pred HhcCChHHHHHHHHHHHHHccCcccCcccceeEeeehhHHHHHHH
Confidence 34689999999999999999 8889999999877666554443
No 35
>COG0368 CobS Cobalamin-5-phosphate synthase [Coenzyme metabolism]
Probab=20.70 E-value=2.4e+02 Score=25.08 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=60.4
Q ss_pred cccccccchhhhHHHHHHHHhhhhccCCC---ccccccccCCCCCCcchhhhccccccCCCCChHHHHHHHHHHHHHHHH
Q 029242 49 KETTTATTITHSLLHYLYTFISLLTVNPF---AKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYAR 125 (196)
Q Consensus 49 ~~~~~~~g~~~~~~~~~~~~~sl~~lnPf---a~lTt~dl~~~~rPWr~eFl~~~~SyS~P~S~~eA~~RV~~Nl~~F~~ 125 (196)
+++..+.|+.+-++..+.+..+|..+-+. ..+.. ....-|.+......-+...+...++ =-+++..+...
T Consensus 101 DsrvG~~Gv~ali~vlll~~~~L~~l~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~ 173 (246)
T COG0368 101 DSRVGAGGVAALILVLLLKVLALASLLDLGAAALLAL----AEVLAKSRMLLVALLSKPPYAGLGG---LGKEFADPRKG 173 (246)
T ss_pred CCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCCCcch---hhHHHhcccch
Confidence 33455567777777777777777666552 00000 0011112112211122222222222 23445555555
Q ss_pred HHHHHHHHH-HHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCc
Q 029242 126 NYASLFILF-FACSLYQMP-LALVGLISSLALWDFFKFCSDKWNW 168 (196)
Q Consensus 126 NYaivvl~v-~~lsLy~hP-iALI~~la~~~~W~fLyFlRDew~l 168 (196)
=+.+..+++ ..+.++.-| ..+...+++++.|.+.+.+..+.|=
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~r~~GG 218 (246)
T COG0368 174 LIGALLLLVLLLLALLFGLSGAIAVAVALLAAALLGRLAKRRFGG 218 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566654444 555556666 5556666789999999999999987
No 36
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=20.48 E-value=36 Score=27.26 Aligned_cols=16 Identities=44% Similarity=1.005 Sum_probs=14.1
Q ss_pred ccCchHHHHHhhhcCc
Q 029242 13 NVPDPAFESWLRDSGY 28 (196)
Q Consensus 13 svp~~afe~Wlrdsg~ 28 (196)
.+...+||.|+|++-|
T Consensus 13 gv~~~~fe~Wv~~tDy 28 (104)
T PF11639_consen 13 GVDPAAFERWVRETDY 28 (104)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhcch
Confidence 4677899999999988
No 37
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=20.24 E-value=1.2e+02 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=36.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHhhcccce
Q 029242 137 CSLYQMPLALVGLISSLALWDFFKFCSDKWNWDRYPVIRQVLVRIAQCVFPL 188 (196)
Q Consensus 137 lsLy~hPiALI~~la~~~~W~fLyFlRDew~l~~~p~~~~~l~~~~q~~~~~ 188 (196)
.+.-.-++.+++|+++.++|+++-+ .+.++|.+.+.+=|-++...++
T Consensus 123 ~s~~~l~v~l~vF~ilv~v~c~la~-----~l~~~p~i~~~leryg~~l~p~ 169 (191)
T PF03596_consen 123 LSLAELIVILIVFLILVGVWCFLAY-----KLARIPIIAEFLERYGRWLVPI 169 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----HHhCChHHHHHHHHhcccHHHH
Confidence 3455788999999999999988754 4678888888887777665554
Done!